Multiple sequence alignment - TraesCS2B01G334000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G334000 chr2B 100.000 4339 0 0 1 4339 477572303 477576641 0.000000e+00 8013.0
1 TraesCS2B01G334000 chr2B 93.985 266 15 1 2042 2307 477528912 477528648 6.760000e-108 401.0
2 TraesCS2B01G334000 chr2B 78.727 550 83 26 1090 1628 477529845 477529319 1.930000e-88 337.0
3 TraesCS2B01G334000 chr2D 91.460 2342 109 38 1 2311 403477327 403479608 0.000000e+00 3133.0
4 TraesCS2B01G334000 chr2D 92.620 813 44 10 2346 3149 403479606 403480411 0.000000e+00 1155.0
5 TraesCS2B01G334000 chr2D 92.857 266 18 1 2042 2307 403346825 403346561 6.810000e-103 385.0
6 TraesCS2B01G334000 chr2D 90.244 205 20 0 1722 1926 403347141 403346937 7.150000e-68 268.0
7 TraesCS2B01G334000 chr2D 84.711 242 35 2 1090 1330 403347824 403347584 1.560000e-59 241.0
8 TraesCS2B01G334000 chr2A 87.214 2362 163 67 1 2319 541774863 541777128 0.000000e+00 2560.0
9 TraesCS2B01G334000 chr2A 91.568 842 51 13 2369 3199 541777150 541777982 0.000000e+00 1144.0
10 TraesCS2B01G334000 chr2A 93.487 261 17 0 2042 2302 540849099 540848839 5.260000e-104 388.0
11 TraesCS2B01G334000 chr2A 84.711 242 35 2 1090 1330 540850074 540849834 1.560000e-59 241.0
12 TraesCS2B01G334000 chr1A 95.285 615 22 5 3197 3806 453067673 453068285 0.000000e+00 968.0
13 TraesCS2B01G334000 chr4B 96.455 536 17 1 3804 4339 86058239 86057706 0.000000e+00 883.0
14 TraesCS2B01G334000 chr4B 93.358 542 19 4 3799 4339 568635506 568636031 0.000000e+00 785.0
15 TraesCS2B01G334000 chr4B 87.283 346 35 6 3203 3543 467985812 467985471 1.890000e-103 387.0
16 TraesCS2B01G334000 chr4B 92.692 260 17 2 2041 2299 41012875 41013133 1.470000e-99 374.0
17 TraesCS2B01G334000 chr4B 92.337 261 18 2 2041 2300 483334259 483334000 1.910000e-98 370.0
18 TraesCS2B01G334000 chr4B 79.175 509 85 18 1418 1914 41012237 41012736 2.500000e-87 333.0
19 TraesCS2B01G334000 chr4B 89.041 219 24 0 1722 1940 483334557 483334339 5.530000e-69 272.0
20 TraesCS2B01G334000 chr4B 89.691 194 20 0 1137 1330 41010053 41010246 9.320000e-62 248.0
21 TraesCS2B01G334000 chr3B 96.097 538 16 3 3804 4339 816527538 816527004 0.000000e+00 872.0
22 TraesCS2B01G334000 chr3B 94.213 553 13 7 3803 4339 596851981 596851432 0.000000e+00 826.0
23 TraesCS2B01G334000 chr3B 92.377 551 18 5 3810 4339 617428175 617427628 0.000000e+00 763.0
24 TraesCS2B01G334000 chr3B 91.434 537 38 4 3806 4339 56452205 56451674 0.000000e+00 730.0
25 TraesCS2B01G334000 chr3B 83.880 366 47 8 3188 3544 765390434 765390072 5.370000e-89 339.0
26 TraesCS2B01G334000 chr1B 95.370 540 20 3 3802 4339 674470636 674470100 0.000000e+00 854.0
27 TraesCS2B01G334000 chr1B 92.419 554 22 2 3806 4339 522120081 522119528 0.000000e+00 773.0
28 TraesCS2B01G334000 chr1B 91.532 555 15 9 3803 4339 540151044 540151584 0.000000e+00 736.0
29 TraesCS2B01G334000 chr1B 86.944 360 38 7 3190 3543 100153487 100153843 3.140000e-106 396.0
30 TraesCS2B01G334000 chr1B 87.147 319 32 7 3227 3543 100154296 100154607 1.920000e-93 353.0
31 TraesCS2B01G334000 chr1B 87.560 209 20 3 3534 3740 100155216 100155420 2.020000e-58 237.0
32 TraesCS2B01G334000 chr6B 95.336 536 23 1 3806 4339 619729766 619730301 0.000000e+00 850.0
33 TraesCS2B01G334000 chr6B 91.786 560 21 7 3803 4339 31585463 31584906 0.000000e+00 756.0
34 TraesCS2B01G334000 chr5B 93.297 552 19 3 3806 4339 446363330 446362779 0.000000e+00 798.0
35 TraesCS2B01G334000 chr4A 79.187 812 128 34 1137 1935 75215112 75214329 3.840000e-145 525.0
36 TraesCS2B01G334000 chr4A 93.401 197 13 0 1718 1914 574870427 574870231 4.240000e-75 292.0
37 TraesCS2B01G334000 chr4A 84.586 266 30 7 3534 3790 648773215 648773478 2.000000e-63 254.0
38 TraesCS2B01G334000 chr4A 89.175 194 21 0 1137 1330 574872603 574872410 4.340000e-60 243.0
39 TraesCS2B01G334000 chr4A 88.660 194 22 0 1137 1330 641451293 641451486 2.020000e-58 237.0
40 TraesCS2B01G334000 chr4A 86.782 174 21 1 3794 3967 615528763 615528934 4.430000e-45 193.0
41 TraesCS2B01G334000 chr7B 94.465 271 14 1 3803 4073 119240484 119240753 2.410000e-112 416.0
42 TraesCS2B01G334000 chr7B 88.442 199 21 1 3534 3730 565654899 565655097 5.610000e-59 239.0
43 TraesCS2B01G334000 chr6A 87.500 360 32 5 3198 3544 133413342 133412983 1.880000e-108 403.0
44 TraesCS2B01G334000 chr6A 83.889 360 43 12 3198 3544 601221161 601220804 3.230000e-86 329.0
45 TraesCS2B01G334000 chr4D 92.692 260 17 2 2041 2299 28839749 28840007 1.470000e-99 374.0
46 TraesCS2B01G334000 chr4D 92.337 261 18 2 2041 2300 393636858 393637117 1.910000e-98 370.0
47 TraesCS2B01G334000 chr4D 78.998 519 83 22 1418 1914 28839128 28839642 8.990000e-87 331.0
48 TraesCS2B01G334000 chr4D 89.720 214 22 0 1718 1931 393636551 393636764 1.540000e-69 274.0
49 TraesCS2B01G334000 chr5D 85.818 275 32 4 3198 3467 555492894 555492622 7.100000e-73 285.0
50 TraesCS2B01G334000 chr1D 80.508 354 43 13 3196 3544 492363107 492363439 9.320000e-62 248.0
51 TraesCS2B01G334000 chrUn 87.817 197 21 1 3537 3730 77766858 77766662 1.210000e-55 228.0
52 TraesCS2B01G334000 chrUn 80.000 130 15 9 369 491 336020969 336020844 7.730000e-13 86.1
53 TraesCS2B01G334000 chr6D 81.522 92 14 3 3236 3324 468247977 468247886 6.020000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G334000 chr2B 477572303 477576641 4338 False 8013.000000 8013 100.000000 1 4339 1 chr2B.!!$F1 4338
1 TraesCS2B01G334000 chr2B 477528648 477529845 1197 True 369.000000 401 86.356000 1090 2307 2 chr2B.!!$R1 1217
2 TraesCS2B01G334000 chr2D 403477327 403480411 3084 False 2144.000000 3133 92.040000 1 3149 2 chr2D.!!$F1 3148
3 TraesCS2B01G334000 chr2D 403346561 403347824 1263 True 298.000000 385 89.270667 1090 2307 3 chr2D.!!$R1 1217
4 TraesCS2B01G334000 chr2A 541774863 541777982 3119 False 1852.000000 2560 89.391000 1 3199 2 chr2A.!!$F1 3198
5 TraesCS2B01G334000 chr2A 540848839 540850074 1235 True 314.500000 388 89.099000 1090 2302 2 chr2A.!!$R1 1212
6 TraesCS2B01G334000 chr1A 453067673 453068285 612 False 968.000000 968 95.285000 3197 3806 1 chr1A.!!$F1 609
7 TraesCS2B01G334000 chr4B 86057706 86058239 533 True 883.000000 883 96.455000 3804 4339 1 chr4B.!!$R1 535
8 TraesCS2B01G334000 chr4B 568635506 568636031 525 False 785.000000 785 93.358000 3799 4339 1 chr4B.!!$F1 540
9 TraesCS2B01G334000 chr4B 483334000 483334557 557 True 321.000000 370 90.689000 1722 2300 2 chr4B.!!$R3 578
10 TraesCS2B01G334000 chr4B 41010053 41013133 3080 False 318.333333 374 87.186000 1137 2299 3 chr4B.!!$F2 1162
11 TraesCS2B01G334000 chr3B 816527004 816527538 534 True 872.000000 872 96.097000 3804 4339 1 chr3B.!!$R5 535
12 TraesCS2B01G334000 chr3B 596851432 596851981 549 True 826.000000 826 94.213000 3803 4339 1 chr3B.!!$R2 536
13 TraesCS2B01G334000 chr3B 617427628 617428175 547 True 763.000000 763 92.377000 3810 4339 1 chr3B.!!$R3 529
14 TraesCS2B01G334000 chr3B 56451674 56452205 531 True 730.000000 730 91.434000 3806 4339 1 chr3B.!!$R1 533
15 TraesCS2B01G334000 chr1B 674470100 674470636 536 True 854.000000 854 95.370000 3802 4339 1 chr1B.!!$R2 537
16 TraesCS2B01G334000 chr1B 522119528 522120081 553 True 773.000000 773 92.419000 3806 4339 1 chr1B.!!$R1 533
17 TraesCS2B01G334000 chr1B 540151044 540151584 540 False 736.000000 736 91.532000 3803 4339 1 chr1B.!!$F1 536
18 TraesCS2B01G334000 chr1B 100153487 100155420 1933 False 328.666667 396 87.217000 3190 3740 3 chr1B.!!$F2 550
19 TraesCS2B01G334000 chr6B 619729766 619730301 535 False 850.000000 850 95.336000 3806 4339 1 chr6B.!!$F1 533
20 TraesCS2B01G334000 chr6B 31584906 31585463 557 True 756.000000 756 91.786000 3803 4339 1 chr6B.!!$R1 536
21 TraesCS2B01G334000 chr5B 446362779 446363330 551 True 798.000000 798 93.297000 3806 4339 1 chr5B.!!$R1 533
22 TraesCS2B01G334000 chr4A 75214329 75215112 783 True 525.000000 525 79.187000 1137 1935 1 chr4A.!!$R1 798
23 TraesCS2B01G334000 chr4A 574870231 574872603 2372 True 267.500000 292 91.288000 1137 1914 2 chr4A.!!$R2 777
24 TraesCS2B01G334000 chr4D 28839128 28840007 879 False 352.500000 374 85.845000 1418 2299 2 chr4D.!!$F1 881
25 TraesCS2B01G334000 chr4D 393636551 393637117 566 False 322.000000 370 91.028500 1718 2300 2 chr4D.!!$F2 582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
592 644 0.459237 ATTTGAGGTCGCGAGCAGAG 60.459 55.000 36.38 0.0 0.0 3.35 F
1656 4314 0.036765 AACGCGCCTACATTTCCTGA 60.037 50.000 5.73 0.0 0.0 3.86 F
2293 5002 1.412710 ACCTTCACGCTCAACTTCTCA 59.587 47.619 0.00 0.0 0.0 3.27 F
2783 5503 2.263540 CGGTTCGGGTGGATCGTT 59.736 61.111 0.00 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1749 4419 0.321671 CCTTGAGCTCCACCTCGAAA 59.678 55.000 12.15 0.0 34.56 3.46 R
2705 5425 0.038166 TGATGCCCCTGAAGGTGAAC 59.962 55.000 0.00 0.0 0.00 3.18 R
3100 5820 1.290203 ATTCTGTAGCACAATCGGCG 58.710 50.000 0.00 0.0 36.08 6.46 R
3808 7928 2.125552 CGCGGCTGTTGGAGATGA 60.126 61.111 0.00 0.0 0.00 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
144 150 2.012673 CACTGTCTGCTTAGGCCAATC 58.987 52.381 5.01 0.00 37.74 2.67
151 157 1.494721 TGCTTAGGCCAATCTTAGGGG 59.505 52.381 5.01 0.00 37.74 4.79
169 175 2.511600 GTCGCCCAGATCAACCCG 60.512 66.667 0.00 0.00 0.00 5.28
180 186 3.006537 CAGATCAACCCGGGTACGATAAT 59.993 47.826 29.39 21.06 44.60 1.28
195 201 4.817517 ACGATAATAGACCAATAAGCCGG 58.182 43.478 0.00 0.00 0.00 6.13
236 242 7.629222 GCCTTTCTAATTCTAAGCTCAAATGCA 60.629 37.037 0.00 0.00 34.99 3.96
237 243 8.246180 CCTTTCTAATTCTAAGCTCAAATGCAA 58.754 33.333 0.00 0.00 34.99 4.08
238 244 9.630098 CTTTCTAATTCTAAGCTCAAATGCAAA 57.370 29.630 0.00 0.00 34.99 3.68
240 246 9.577110 TTCTAATTCTAAGCTCAAATGCAAATG 57.423 29.630 0.00 0.00 34.99 2.32
241 247 6.657836 AATTCTAAGCTCAAATGCAAATGC 57.342 33.333 0.00 0.00 42.50 3.56
242 248 4.114058 TCTAAGCTCAAATGCAAATGCC 57.886 40.909 2.46 0.00 41.18 4.40
412 464 8.638685 AGTTTTTGAGTCATCATTTGTTTCAG 57.361 30.769 0.00 0.00 34.73 3.02
536 588 9.535878 TTACTCTCTTTTGTTTGTTTGTTTTGT 57.464 25.926 0.00 0.00 0.00 2.83
537 589 8.432110 ACTCTCTTTTGTTTGTTTGTTTTGTT 57.568 26.923 0.00 0.00 0.00 2.83
538 590 8.888716 ACTCTCTTTTGTTTGTTTGTTTTGTTT 58.111 25.926 0.00 0.00 0.00 2.83
539 591 9.715123 CTCTCTTTTGTTTGTTTGTTTTGTTTT 57.285 25.926 0.00 0.00 0.00 2.43
540 592 9.495754 TCTCTTTTGTTTGTTTGTTTTGTTTTG 57.504 25.926 0.00 0.00 0.00 2.44
568 620 5.681982 CGGTTTTTGTTTTAGTATTCACGCA 59.318 36.000 0.00 0.00 0.00 5.24
584 636 1.154150 GCAGTGCATTTGAGGTCGC 60.154 57.895 11.09 0.00 0.00 5.19
586 638 1.005037 AGTGCATTTGAGGTCGCGA 60.005 52.632 3.71 3.71 0.00 5.87
587 639 1.016130 AGTGCATTTGAGGTCGCGAG 61.016 55.000 10.24 0.00 0.00 5.03
588 640 2.390599 TGCATTTGAGGTCGCGAGC 61.391 57.895 29.78 29.78 0.00 5.03
590 642 1.712081 CATTTGAGGTCGCGAGCAG 59.288 57.895 36.38 16.57 0.00 4.24
592 644 0.459237 ATTTGAGGTCGCGAGCAGAG 60.459 55.000 36.38 0.00 0.00 3.35
593 645 1.524008 TTTGAGGTCGCGAGCAGAGA 61.524 55.000 36.38 18.65 0.00 3.10
595 647 2.360600 AGGTCGCGAGCAGAGACT 60.361 61.111 36.38 15.05 46.81 3.24
612 664 0.544357 ACTCCACGTCCCATTCTCCA 60.544 55.000 0.00 0.00 0.00 3.86
615 667 1.221840 CACGTCCCATTCTCCAGGG 59.778 63.158 0.00 0.00 46.90 4.45
617 669 2.597903 GTCCCATTCTCCAGGGCC 59.402 66.667 0.00 0.00 45.07 5.80
650 702 0.865111 TGGTGAATCGTGACAAAGCG 59.135 50.000 0.00 0.00 0.00 4.68
652 704 0.785708 GTGAATCGTGACAAAGCGCG 60.786 55.000 0.00 0.00 42.68 6.86
669 721 0.749649 GCGACATCACTGGAGGATCT 59.250 55.000 0.00 0.00 33.73 2.75
673 725 3.549019 CGACATCACTGGAGGATCTAACG 60.549 52.174 0.00 0.00 33.73 3.18
675 727 3.634448 ACATCACTGGAGGATCTAACGAG 59.366 47.826 0.00 0.00 33.73 4.18
677 729 4.498894 TCACTGGAGGATCTAACGAGTA 57.501 45.455 0.00 0.00 33.73 2.59
701 753 5.952347 AGCAGTCCATATATTCTCGGTCATA 59.048 40.000 0.00 0.00 0.00 2.15
736 788 7.277981 ACAATCGAATAGTTACAAACCTGCTAG 59.722 37.037 0.00 0.00 0.00 3.42
797 849 3.319122 GCAACAGAGATCCCACAAAAAGT 59.681 43.478 0.00 0.00 0.00 2.66
810 862 5.180492 CCCACAAAAAGTATCGAAGCAACTA 59.820 40.000 0.00 0.00 0.00 2.24
949 1001 0.696501 TTCCAGGTTAACCCTCCTGC 59.303 55.000 21.30 0.00 46.83 4.85
1010 1063 6.887002 GTGTTCAGAGGGAAATAAGAAAGGAT 59.113 38.462 0.00 0.00 37.23 3.24
1340 1395 2.925594 GCTCCAGGCAAGCTATAGC 58.074 57.895 17.33 17.33 41.35 2.97
1341 1396 0.107456 GCTCCAGGCAAGCTATAGCA 59.893 55.000 26.07 2.29 41.58 3.49
1389 3880 3.296709 CTGACCCTTCGTGTCCGGG 62.297 68.421 0.00 0.00 43.79 5.73
1404 3895 2.297625 CGGGTCGGATTGATCAACG 58.702 57.895 11.07 11.13 0.00 4.10
1410 3901 1.402613 TCGGATTGATCAACGACGCTA 59.597 47.619 11.07 0.00 0.00 4.26
1412 3903 2.153817 CGGATTGATCAACGACGCTATG 59.846 50.000 11.07 0.00 0.00 2.23
1547 4147 1.024579 CCGGTCTGGCATTTAAGCGT 61.025 55.000 0.00 0.00 34.64 5.07
1644 4244 1.349259 AACACGATAGACAACGCGCC 61.349 55.000 5.73 0.00 41.38 6.53
1651 4309 2.373540 TAGACAACGCGCCTACATTT 57.626 45.000 5.73 0.00 0.00 2.32
1656 4314 0.036765 AACGCGCCTACATTTCCTGA 60.037 50.000 5.73 0.00 0.00 3.86
1666 4336 5.220931 GCCTACATTTCCTGATTCATCACAC 60.221 44.000 0.00 0.00 32.50 3.82
1668 4338 6.375174 CCTACATTTCCTGATTCATCACACAA 59.625 38.462 0.00 0.00 32.50 3.33
1670 4340 6.005823 ACATTTCCTGATTCATCACACAAGA 58.994 36.000 0.00 0.00 32.50 3.02
1671 4341 6.150641 ACATTTCCTGATTCATCACACAAGAG 59.849 38.462 0.00 0.00 32.50 2.85
1673 4343 5.233083 TCCTGATTCATCACACAAGAGTT 57.767 39.130 0.00 0.00 32.50 3.01
1674 4344 5.240891 TCCTGATTCATCACACAAGAGTTC 58.759 41.667 0.00 0.00 32.50 3.01
1680 4350 5.077134 TCATCACACAAGAGTTCGATGAT 57.923 39.130 0.00 0.00 37.67 2.45
1681 4351 5.105063 TCATCACACAAGAGTTCGATGATC 58.895 41.667 0.00 0.00 37.67 2.92
1683 4353 4.488879 TCACACAAGAGTTCGATGATCAG 58.511 43.478 0.09 0.00 0.00 2.90
1686 4356 5.061933 CACACAAGAGTTCGATGATCAGAAG 59.938 44.000 0.09 0.00 0.00 2.85
1691 4361 7.337184 ACAAGAGTTCGATGATCAGAAGTACTA 59.663 37.037 0.09 0.00 30.91 1.82
1693 4363 8.458573 AGAGTTCGATGATCAGAAGTACTAAT 57.541 34.615 0.09 0.00 30.91 1.73
1694 4364 8.564574 AGAGTTCGATGATCAGAAGTACTAATC 58.435 37.037 0.09 0.00 30.91 1.75
1698 4368 8.226819 TCGATGATCAGAAGTACTAATCTGTT 57.773 34.615 19.40 13.65 42.86 3.16
1699 4369 8.346300 TCGATGATCAGAAGTACTAATCTGTTC 58.654 37.037 19.40 19.63 42.86 3.18
1704 4374 6.857956 TCAGAAGTACTAATCTGTTCTGCTC 58.142 40.000 19.40 0.40 42.50 4.26
1706 4376 6.751425 CAGAAGTACTAATCTGTTCTGCTCTG 59.249 42.308 14.13 7.07 38.16 3.35
1707 4377 5.004922 AGTACTAATCTGTTCTGCTCTGC 57.995 43.478 0.00 0.00 0.00 4.26
1708 4378 3.969287 ACTAATCTGTTCTGCTCTGCA 57.031 42.857 0.00 0.00 36.92 4.41
1709 4379 4.277515 ACTAATCTGTTCTGCTCTGCAA 57.722 40.909 0.00 0.00 38.41 4.08
1710 4380 4.645535 ACTAATCTGTTCTGCTCTGCAAA 58.354 39.130 0.00 0.00 38.41 3.68
1749 4419 1.589196 GGAGAAGTTCGCGCGCTAT 60.589 57.895 30.48 11.21 0.00 2.97
1940 4610 2.541588 CCAAGAACAAGCGAACAAGGTG 60.542 50.000 0.00 0.00 0.00 4.00
1962 4632 1.417145 GCTTGATCAGATCCTCCAGCT 59.583 52.381 8.00 0.00 0.00 4.24
1977 4647 4.080638 CCTCCAGCTAGTTCTTCAAATCCT 60.081 45.833 0.00 0.00 0.00 3.24
1979 4649 6.352222 CCTCCAGCTAGTTCTTCAAATCCTTA 60.352 42.308 0.00 0.00 0.00 2.69
2002 4672 4.202441 CATCGGAAATATCATCCATCCCC 58.798 47.826 7.94 0.00 36.74 4.81
2293 5002 1.412710 ACCTTCACGCTCAACTTCTCA 59.587 47.619 0.00 0.00 0.00 3.27
2307 5016 3.013921 ACTTCTCAAAAGGCACGAACAA 58.986 40.909 0.00 0.00 0.00 2.83
2311 5020 4.606961 TCTCAAAAGGCACGAACAATTTC 58.393 39.130 0.00 0.00 0.00 2.17
2313 5022 5.004922 TCAAAAGGCACGAACAATTTCTT 57.995 34.783 0.00 0.00 0.00 2.52
2314 5023 5.415221 TCAAAAGGCACGAACAATTTCTTT 58.585 33.333 0.00 0.00 0.00 2.52
2315 5024 5.290643 TCAAAAGGCACGAACAATTTCTTTG 59.709 36.000 0.00 0.00 41.36 2.77
2325 5034 3.562182 ACAATTTCTTTGTCCCTTCCGT 58.438 40.909 0.00 0.00 45.55 4.69
2326 5035 3.958147 ACAATTTCTTTGTCCCTTCCGTT 59.042 39.130 0.00 0.00 45.55 4.44
2327 5036 4.404394 ACAATTTCTTTGTCCCTTCCGTTT 59.596 37.500 0.00 0.00 45.55 3.60
2328 5037 4.848562 ATTTCTTTGTCCCTTCCGTTTC 57.151 40.909 0.00 0.00 0.00 2.78
2329 5038 3.284793 TTCTTTGTCCCTTCCGTTTCA 57.715 42.857 0.00 0.00 0.00 2.69
2330 5039 3.284793 TCTTTGTCCCTTCCGTTTCAA 57.715 42.857 0.00 0.00 0.00 2.69
2331 5040 3.622630 TCTTTGTCCCTTCCGTTTCAAA 58.377 40.909 0.00 0.00 0.00 2.69
2332 5041 4.017808 TCTTTGTCCCTTCCGTTTCAAAA 58.982 39.130 0.00 0.00 0.00 2.44
2333 5042 4.463186 TCTTTGTCCCTTCCGTTTCAAAAA 59.537 37.500 0.00 0.00 0.00 1.94
2366 5075 6.494893 TCTTTGTCCCAGAATTAAACGATG 57.505 37.500 0.00 0.00 0.00 3.84
2388 5101 6.519679 TGAACAGAATCCCTGATTTGATTG 57.480 37.500 0.00 0.00 45.78 2.67
2396 5109 9.699410 AGAATCCCTGATTTGATTGTGTAATTA 57.301 29.630 0.00 0.00 31.89 1.40
2423 5136 4.116961 TCACGTTCTTGAATCGTTTCACT 58.883 39.130 8.41 0.00 41.50 3.41
2428 5141 5.392585 CGTTCTTGAATCGTTTCACTTGTTC 59.607 40.000 8.41 0.00 41.50 3.18
2513 5226 6.898041 TCGAGGTACAAAATTCATGAACAAG 58.102 36.000 11.07 3.99 0.00 3.16
2521 5234 6.425721 ACAAAATTCATGAACAAGCCAATCAG 59.574 34.615 11.07 0.00 0.00 2.90
2522 5235 5.733620 AATTCATGAACAAGCCAATCAGT 57.266 34.783 11.07 0.00 0.00 3.41
2523 5236 5.733620 ATTCATGAACAAGCCAATCAGTT 57.266 34.783 11.07 0.00 0.00 3.16
2524 5237 4.771590 TCATGAACAAGCCAATCAGTTC 57.228 40.909 0.00 0.00 40.45 3.01
2530 5246 5.239306 TGAACAAGCCAATCAGTTCAACTAG 59.761 40.000 4.55 0.00 45.01 2.57
2532 5248 5.865085 ACAAGCCAATCAGTTCAACTAGTA 58.135 37.500 0.00 0.00 0.00 1.82
2535 5251 8.100791 ACAAGCCAATCAGTTCAACTAGTATAA 58.899 33.333 0.00 0.00 0.00 0.98
2538 5254 9.686683 AGCCAATCAGTTCAACTAGTATAATTT 57.313 29.630 0.00 0.00 0.00 1.82
2549 5265 9.439500 TCAACTAGTATAATTTAAAAGCACGGT 57.561 29.630 0.00 0.00 0.00 4.83
2556 5272 9.590088 GTATAATTTAAAAGCACGGTATAGCAC 57.410 33.333 2.37 0.00 0.00 4.40
2558 5274 7.852971 AATTTAAAAGCACGGTATAGCACTA 57.147 32.000 2.37 0.00 0.00 2.74
2565 5281 7.463961 AAGCACGGTATAGCACTAATATACT 57.536 36.000 2.37 0.00 36.67 2.12
2566 5282 8.571461 AAGCACGGTATAGCACTAATATACTA 57.429 34.615 2.37 0.00 36.67 1.82
2567 5283 7.983307 AGCACGGTATAGCACTAATATACTAC 58.017 38.462 2.37 0.00 36.67 2.73
2568 5284 7.828223 AGCACGGTATAGCACTAATATACTACT 59.172 37.037 2.37 0.00 36.67 2.57
2569 5285 8.121708 GCACGGTATAGCACTAATATACTACTC 58.878 40.741 2.37 0.00 36.67 2.59
2570 5286 8.326713 CACGGTATAGCACTAATATACTACTCG 58.673 40.741 2.37 0.00 36.67 4.18
2591 5311 2.910688 ATTTCGTATCGATGCAGGGT 57.089 45.000 14.06 0.00 35.23 4.34
2783 5503 2.263540 CGGTTCGGGTGGATCGTT 59.736 61.111 0.00 0.00 0.00 3.85
3017 5737 2.283529 GGTCGTGAAGAGGGAGGCA 61.284 63.158 0.00 0.00 0.00 4.75
3095 5815 2.437359 GCCGCCAGATGACTGCTT 60.437 61.111 0.00 0.00 42.25 3.91
3100 5820 1.817099 CCAGATGACTGCTTCGCCC 60.817 63.158 0.00 0.00 42.25 6.13
3124 5851 5.444122 GCCGATTGTGCTACAGAATAAATC 58.556 41.667 0.00 0.00 27.44 2.17
3143 5871 1.004361 ACTACCCCTCCATCCCACC 59.996 63.158 0.00 0.00 0.00 4.61
3151 5879 0.758734 CTCCATCCCACCGCATAAGA 59.241 55.000 0.00 0.00 0.00 2.10
3153 5881 1.347707 TCCATCCCACCGCATAAGATC 59.652 52.381 0.00 0.00 0.00 2.75
3158 5886 3.476552 TCCCACCGCATAAGATCATTTC 58.523 45.455 0.00 0.00 0.00 2.17
3159 5887 2.224079 CCCACCGCATAAGATCATTTCG 59.776 50.000 0.00 0.00 0.00 3.46
3175 5903 5.212194 TCATTTCGCAAGTTGTTTTAGCTC 58.788 37.500 4.48 0.00 39.48 4.09
3243 5975 4.553429 CGTCTCAACAAAACAAGTTCACAC 59.447 41.667 0.00 0.00 0.00 3.82
3420 6919 5.163733 TGTTTTGGTGAGTTCTTTTACCGAC 60.164 40.000 0.00 0.00 35.98 4.79
3423 6922 2.064014 GTGAGTTCTTTTACCGACCCG 58.936 52.381 0.00 0.00 0.00 5.28
3442 6941 4.142773 ACCCGTTTAAATGTGTCTTATGCG 60.143 41.667 6.66 0.00 0.00 4.73
3780 7900 3.058160 GGCATTGCCGCACTCACT 61.058 61.111 12.82 0.00 39.62 3.41
3781 7901 2.482374 GCATTGCCGCACTCACTC 59.518 61.111 0.00 0.00 0.00 3.51
3784 7904 3.881952 ATTGCCGCACTCACTCGCA 62.882 57.895 0.00 0.00 0.00 5.10
3923 8043 0.179048 AGCCGTGCTATAATGCAGCA 60.179 50.000 0.00 0.00 46.47 4.41
3927 8047 1.933734 TGCTATAATGCAGCACGCG 59.066 52.632 3.53 3.53 43.90 6.01
4058 8258 0.318120 CCAACCAAGTTCATGCCCAC 59.682 55.000 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 24 6.326375 CCGCCACTAATTATTTAAAAGCACA 58.674 36.000 0.00 0.00 0.00 4.57
26 28 7.012989 AGCTACCCGCCACTAATTATTTAAAAG 59.987 37.037 0.00 0.00 40.39 2.27
169 175 6.104665 GGCTTATTGGTCTATTATCGTACCC 58.895 44.000 0.00 0.00 0.00 3.69
180 186 2.433239 GGAGAACCGGCTTATTGGTCTA 59.567 50.000 0.00 0.00 37.54 2.59
195 201 4.889427 GGCATTTTGGCGGAGAAC 57.111 55.556 0.00 0.00 31.79 3.01
204 210 8.246180 TGAGCTTAGAATTAGAAAGGCATTTTG 58.754 33.333 0.00 0.00 0.00 2.44
310 318 8.181573 TGATTTCATCGGAAAACTAAGCAATAC 58.818 33.333 0.00 0.00 45.52 1.89
311 319 8.181573 GTGATTTCATCGGAAAACTAAGCAATA 58.818 33.333 0.00 0.00 45.52 1.90
397 442 5.065235 TGCTCTGACTGAAACAAATGATGA 58.935 37.500 0.00 0.00 0.00 2.92
402 447 7.750229 TTCTAATGCTCTGACTGAAACAAAT 57.250 32.000 0.00 0.00 0.00 2.32
438 490 8.810427 GTTCTACATACATGCAAATTTTCATGG 58.190 33.333 27.10 15.96 43.11 3.66
511 563 9.535878 AACAAAACAAACAAACAAAAGAGAGTA 57.464 25.926 0.00 0.00 0.00 2.59
512 564 8.432110 AACAAAACAAACAAACAAAAGAGAGT 57.568 26.923 0.00 0.00 0.00 3.24
513 565 9.715123 AAAACAAAACAAACAAACAAAAGAGAG 57.285 25.926 0.00 0.00 0.00 3.20
514 566 9.495754 CAAAACAAAACAAACAAACAAAAGAGA 57.504 25.926 0.00 0.00 0.00 3.10
515 567 8.741278 CCAAAACAAAACAAACAAACAAAAGAG 58.259 29.630 0.00 0.00 0.00 2.85
516 568 8.458843 TCCAAAACAAAACAAACAAACAAAAGA 58.541 25.926 0.00 0.00 0.00 2.52
535 587 4.671880 AAAACAAAAACCGCTCCAAAAC 57.328 36.364 0.00 0.00 0.00 2.43
536 588 5.480205 ACTAAAACAAAAACCGCTCCAAAA 58.520 33.333 0.00 0.00 0.00 2.44
537 589 5.074584 ACTAAAACAAAAACCGCTCCAAA 57.925 34.783 0.00 0.00 0.00 3.28
538 590 4.722361 ACTAAAACAAAAACCGCTCCAA 57.278 36.364 0.00 0.00 0.00 3.53
539 591 6.039493 TGAATACTAAAACAAAAACCGCTCCA 59.961 34.615 0.00 0.00 0.00 3.86
540 592 6.361481 GTGAATACTAAAACAAAAACCGCTCC 59.639 38.462 0.00 0.00 0.00 4.70
568 620 1.005037 TCGCGACCTCAAATGCACT 60.005 52.632 3.71 0.00 0.00 4.40
580 632 2.101380 GGAGTCTCTGCTCGCGAC 59.899 66.667 3.71 2.83 36.41 5.19
584 636 1.135731 GACGTGGAGTCTCTGCTCG 59.864 63.158 0.00 10.12 46.13 5.03
586 638 1.979693 GGGACGTGGAGTCTCTGCT 60.980 63.158 0.00 0.00 46.76 4.24
587 639 2.574399 GGGACGTGGAGTCTCTGC 59.426 66.667 0.00 0.00 46.76 4.26
593 645 0.544357 TGGAGAATGGGACGTGGAGT 60.544 55.000 0.00 0.00 0.00 3.85
595 647 1.264749 CCTGGAGAATGGGACGTGGA 61.265 60.000 0.00 0.00 0.00 4.02
615 667 2.635443 CCACCATGTTCGGGTTGGC 61.635 63.158 0.00 0.00 36.19 4.52
617 669 0.536233 TCACCACCATGTTCGGGTTG 60.536 55.000 0.00 0.00 36.19 3.77
650 702 0.749649 AGATCCTCCAGTGATGTCGC 59.250 55.000 0.00 0.00 0.00 5.19
652 704 3.632604 TCGTTAGATCCTCCAGTGATGTC 59.367 47.826 0.00 0.00 0.00 3.06
669 721 7.148457 CGAGAATATATGGACTGCTACTCGTTA 60.148 40.741 0.00 0.00 38.66 3.18
673 725 5.416326 ACCGAGAATATATGGACTGCTACTC 59.584 44.000 0.00 0.00 0.00 2.59
675 727 5.183331 TGACCGAGAATATATGGACTGCTAC 59.817 44.000 0.00 0.00 0.00 3.58
677 729 4.152647 TGACCGAGAATATATGGACTGCT 58.847 43.478 0.00 0.00 0.00 4.24
736 788 4.464947 AGTATTCCTTAATTGCTCCTGCC 58.535 43.478 0.00 0.00 38.71 4.85
797 849 9.302345 CTTTACTTGATCTTAGTTGCTTCGATA 57.698 33.333 6.41 0.00 0.00 2.92
810 862 1.740025 GCGGCTGCTTTACTTGATCTT 59.260 47.619 11.21 0.00 38.39 2.40
949 1001 7.899178 TTAGGCAACACGAACCATATATATG 57.101 36.000 14.78 14.78 41.41 1.78
1010 1063 2.191354 CTCCGTACGTGTCAGGCGAA 62.191 60.000 15.21 0.00 0.00 4.70
1020 1073 1.605058 ATGCCTGAAGCTCCGTACGT 61.605 55.000 15.21 0.00 44.23 3.57
1021 1074 1.141881 ATGCCTGAAGCTCCGTACG 59.858 57.895 8.69 8.69 44.23 3.67
1022 1075 0.811616 CCATGCCTGAAGCTCCGTAC 60.812 60.000 0.00 0.00 44.23 3.67
1023 1076 1.264749 ACCATGCCTGAAGCTCCGTA 61.265 55.000 0.00 0.00 44.23 4.02
1358 3845 3.570912 AGGGTCAGACGGAAAGAAAAA 57.429 42.857 0.00 0.00 0.00 1.94
1389 3880 0.297820 GCGTCGTTGATCAATCCGAC 59.702 55.000 28.37 28.37 44.51 4.79
1404 3895 1.126846 GTTCTGCACACACATAGCGTC 59.873 52.381 0.00 0.00 0.00 5.19
1410 3901 1.148273 ACCGGTTCTGCACACACAT 59.852 52.632 0.00 0.00 0.00 3.21
1412 3903 3.022287 CACCGGTTCTGCACACAC 58.978 61.111 2.97 0.00 0.00 3.82
1517 4117 0.886490 CCAGACCGGCCAGCATTATC 60.886 60.000 0.00 0.00 0.00 1.75
1538 4138 0.391130 TCTGCCAGCGACGCTTAAAT 60.391 50.000 21.97 0.00 36.40 1.40
1541 4141 1.736645 GTTCTGCCAGCGACGCTTA 60.737 57.895 21.97 8.81 36.40 3.09
1644 4244 6.990341 TGTGTGATGAATCAGGAAATGTAG 57.010 37.500 0.00 0.00 37.51 2.74
1651 4309 4.897509 ACTCTTGTGTGATGAATCAGGA 57.102 40.909 0.00 0.00 37.51 3.86
1656 4314 5.482006 TCATCGAACTCTTGTGTGATGAAT 58.518 37.500 0.00 0.00 40.98 2.57
1666 4336 6.559810 AGTACTTCTGATCATCGAACTCTTG 58.440 40.000 0.00 0.00 0.00 3.02
1668 4338 7.867305 TTAGTACTTCTGATCATCGAACTCT 57.133 36.000 0.00 0.00 0.00 3.24
1670 4340 8.349245 CAGATTAGTACTTCTGATCATCGAACT 58.651 37.037 16.50 0.00 41.53 3.01
1671 4341 8.132362 ACAGATTAGTACTTCTGATCATCGAAC 58.868 37.037 24.83 0.00 41.53 3.95
1673 4343 7.809546 ACAGATTAGTACTTCTGATCATCGA 57.190 36.000 24.83 0.00 41.53 3.59
1674 4344 8.349245 AGAACAGATTAGTACTTCTGATCATCG 58.651 37.037 24.83 9.56 41.58 3.84
1680 4350 6.661377 AGAGCAGAACAGATTAGTACTTCTGA 59.339 38.462 24.83 0.00 41.53 3.27
1681 4351 6.751425 CAGAGCAGAACAGATTAGTACTTCTG 59.249 42.308 18.88 18.88 43.97 3.02
1683 4353 5.518487 GCAGAGCAGAACAGATTAGTACTTC 59.482 44.000 0.00 0.00 0.00 3.01
1686 4356 4.748892 TGCAGAGCAGAACAGATTAGTAC 58.251 43.478 0.00 0.00 33.32 2.73
1691 4361 4.156190 CAGATTTGCAGAGCAGAACAGATT 59.844 41.667 0.00 0.00 40.61 2.40
1693 4363 3.072211 CAGATTTGCAGAGCAGAACAGA 58.928 45.455 0.00 0.00 40.61 3.41
1694 4364 3.473093 CAGATTTGCAGAGCAGAACAG 57.527 47.619 0.00 0.00 40.61 3.16
1749 4419 0.321671 CCTTGAGCTCCACCTCGAAA 59.678 55.000 12.15 0.00 34.56 3.46
1940 4610 2.836262 CTGGAGGATCTGATCAAGCAC 58.164 52.381 18.64 1.78 33.73 4.40
1962 4632 7.177832 TCCGATGTAAGGATTTGAAGAACTA 57.822 36.000 0.00 0.00 31.86 2.24
1977 4647 6.414732 GGGATGGATGATATTTCCGATGTAA 58.585 40.000 0.00 0.00 35.94 2.41
1979 4649 4.324563 GGGGATGGATGATATTTCCGATGT 60.325 45.833 0.00 0.00 35.94 3.06
2002 4672 2.409752 GCCGCGTCATAATCATAACACG 60.410 50.000 4.92 0.00 0.00 4.49
2224 4933 1.384989 GGAAGATGAGCTCGTCGGGA 61.385 60.000 26.30 0.70 36.99 5.14
2293 5002 5.717038 CAAAGAAATTGTTCGTGCCTTTT 57.283 34.783 0.00 0.00 38.90 2.27
2307 5016 4.211920 TGAAACGGAAGGGACAAAGAAAT 58.788 39.130 0.00 0.00 0.00 2.17
2311 5020 4.379339 TTTTGAAACGGAAGGGACAAAG 57.621 40.909 0.00 0.00 34.18 2.77
2338 5047 8.417884 TCGTTTAATTCTGGGACAAAGATTTTT 58.582 29.630 0.00 0.00 38.70 1.94
2339 5048 7.947282 TCGTTTAATTCTGGGACAAAGATTTT 58.053 30.769 0.00 0.00 38.70 1.82
2340 5049 7.519032 TCGTTTAATTCTGGGACAAAGATTT 57.481 32.000 0.00 0.00 38.70 2.17
2341 5050 7.393234 TCATCGTTTAATTCTGGGACAAAGATT 59.607 33.333 0.00 0.00 38.70 2.40
2342 5051 6.884295 TCATCGTTTAATTCTGGGACAAAGAT 59.116 34.615 0.00 0.00 38.70 2.40
2343 5052 6.234920 TCATCGTTTAATTCTGGGACAAAGA 58.765 36.000 0.00 0.00 38.70 2.52
2344 5053 6.494893 TCATCGTTTAATTCTGGGACAAAG 57.505 37.500 0.00 0.00 38.70 2.77
2345 5054 6.263392 TGTTCATCGTTTAATTCTGGGACAAA 59.737 34.615 0.00 0.00 38.70 2.83
2346 5055 5.765677 TGTTCATCGTTTAATTCTGGGACAA 59.234 36.000 0.00 0.00 38.70 3.18
2347 5056 5.309638 TGTTCATCGTTTAATTCTGGGACA 58.690 37.500 0.00 0.00 0.00 4.02
2348 5057 5.642063 TCTGTTCATCGTTTAATTCTGGGAC 59.358 40.000 0.00 0.00 0.00 4.46
2361 5070 4.494091 AATCAGGGATTCTGTTCATCGT 57.506 40.909 0.00 0.00 43.76 3.73
2366 5075 6.071728 ACACAATCAAATCAGGGATTCTGTTC 60.072 38.462 0.00 0.00 43.76 3.18
2396 5109 5.924475 AACGATTCAAGAACGTGAAATCT 57.076 34.783 7.18 0.00 40.76 2.40
2415 5128 4.203828 CACAAGATCGAACAAGTGAAACG 58.796 43.478 10.59 0.00 45.86 3.60
2423 5136 1.202758 ACCCTGCACAAGATCGAACAA 60.203 47.619 0.00 0.00 0.00 2.83
2428 5141 0.742281 CTGGACCCTGCACAAGATCG 60.742 60.000 0.00 0.00 0.00 3.69
2523 5236 9.439500 ACCGTGCTTTTAAATTATACTAGTTGA 57.561 29.630 0.00 0.00 0.00 3.18
2530 5246 9.590088 GTGCTATACCGTGCTTTTAAATTATAC 57.410 33.333 0.00 0.00 0.00 1.47
2532 5248 8.446599 AGTGCTATACCGTGCTTTTAAATTAT 57.553 30.769 0.00 0.00 0.00 1.28
2535 5251 7.852971 TTAGTGCTATACCGTGCTTTTAAAT 57.147 32.000 0.00 0.00 0.00 1.40
2538 5254 9.630098 GTATATTAGTGCTATACCGTGCTTTTA 57.370 33.333 0.00 0.00 0.00 1.52
2539 5255 8.365647 AGTATATTAGTGCTATACCGTGCTTTT 58.634 33.333 0.00 0.00 34.13 2.27
2541 5257 7.463961 AGTATATTAGTGCTATACCGTGCTT 57.536 36.000 0.00 0.00 34.13 3.91
2565 5281 5.347012 TGCATCGATACGAAATACGAGTA 57.653 39.130 0.00 0.00 45.77 2.59
2566 5282 4.219143 TGCATCGATACGAAATACGAGT 57.781 40.909 0.00 0.00 45.77 4.18
2567 5283 3.604198 CCTGCATCGATACGAAATACGAG 59.396 47.826 0.00 0.00 45.77 4.18
2568 5284 3.561503 CCTGCATCGATACGAAATACGA 58.438 45.455 0.00 0.00 45.77 3.43
2570 5286 3.650139 ACCCTGCATCGATACGAAATAC 58.350 45.455 0.00 0.00 39.99 1.89
2591 5311 5.412594 GCAGTTCTCCATCACATTCTTGTAA 59.587 40.000 0.00 0.00 33.76 2.41
2705 5425 0.038166 TGATGCCCCTGAAGGTGAAC 59.962 55.000 0.00 0.00 0.00 3.18
2783 5503 2.183300 GGCATCGTGTACGCTGGA 59.817 61.111 9.83 0.00 36.17 3.86
3005 5725 1.599576 GGACACTGCCTCCCTCTTC 59.400 63.158 0.00 0.00 0.00 2.87
3017 5737 3.314331 CTCCTGTGGCCGGACACT 61.314 66.667 38.95 0.00 41.84 3.55
3100 5820 1.290203 ATTCTGTAGCACAATCGGCG 58.710 50.000 0.00 0.00 36.08 6.46
3124 5851 1.345715 GGTGGGATGGAGGGGTAGTG 61.346 65.000 0.00 0.00 0.00 2.74
3143 5871 4.201208 ACTTGCGAAATGATCTTATGCG 57.799 40.909 0.00 0.00 0.00 4.73
3151 5879 5.772521 AGCTAAAACAACTTGCGAAATGAT 58.227 33.333 0.00 0.00 0.00 2.45
3153 5881 4.087085 CGAGCTAAAACAACTTGCGAAATG 59.913 41.667 0.00 0.00 0.00 2.32
3158 5886 1.318251 GCGAGCTAAAACAACTTGCG 58.682 50.000 0.00 0.00 31.51 4.85
3159 5887 2.399396 TGCGAGCTAAAACAACTTGC 57.601 45.000 0.00 0.00 40.58 4.01
3325 6058 6.433716 TGTGTTGGATCACAAATATGTCACAT 59.566 34.615 0.00 0.00 43.92 3.21
3420 6919 4.339429 CGCATAAGACACATTTAAACGGG 58.661 43.478 0.00 0.00 0.00 5.28
3423 6922 6.580791 TCTTTGCGCATAAGACACATTTAAAC 59.419 34.615 22.59 0.00 0.00 2.01
3442 6941 3.347216 ACACCCACACTCATATCTTTGC 58.653 45.455 0.00 0.00 0.00 3.68
3765 7885 2.780643 CGAGTGAGTGCGGCAATG 59.219 61.111 8.01 0.00 0.00 2.82
3798 7918 5.049167 GCTGTTGGAGATGATCTAAGTGAG 58.951 45.833 0.00 0.00 0.00 3.51
3801 7921 3.181471 CGGCTGTTGGAGATGATCTAAGT 60.181 47.826 0.00 0.00 0.00 2.24
3808 7928 2.125552 CGCGGCTGTTGGAGATGA 60.126 61.111 0.00 0.00 0.00 2.92
4058 8258 3.992643 TGAACTTGTGGGCATGAATTTG 58.007 40.909 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.