Multiple sequence alignment - TraesCS2B01G333700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G333700 chr2B 100.000 4286 0 0 1 4286 477530899 477526614 0.000000e+00 7915.0
1 TraesCS2B01G333700 chr2B 93.985 266 15 1 1988 2252 477574344 477574609 6.680000e-108 401.0
2 TraesCS2B01G333700 chr2B 88.535 314 30 3 6 313 39975145 39975458 4.050000e-100 375.0
3 TraesCS2B01G333700 chr2B 87.975 316 30 6 4 313 23337345 23337032 2.440000e-97 366.0
4 TraesCS2B01G333700 chr2B 78.727 550 83 26 1055 1581 477573392 477573930 1.910000e-88 337.0
5 TraesCS2B01G333700 chr2B 89.904 208 21 0 1690 1897 477574021 477574228 7.060000e-68 268.0
6 TraesCS2B01G333700 chr2B 98.462 65 1 0 3680 3744 477527156 477527220 9.740000e-22 115.0
7 TraesCS2B01G333700 chr2B 100.000 41 0 0 2264 2304 477528519 477528479 4.600000e-10 76.8
8 TraesCS2B01G333700 chr2B 100.000 41 0 0 2381 2421 477528636 477528596 4.600000e-10 76.8
9 TraesCS2B01G333700 chr2A 92.321 1693 57 29 639 2268 540850501 540848819 0.000000e+00 2338.0
10 TraesCS2B01G333700 chr2A 94.327 899 34 9 2555 3439 540848621 540847726 0.000000e+00 1362.0
11 TraesCS2B01G333700 chr2A 88.396 879 57 20 3436 4281 540847659 540846793 0.000000e+00 1016.0
12 TraesCS2B01G333700 chr2A 84.775 578 69 13 1690 2252 541776544 541777117 2.890000e-156 562.0
13 TraesCS2B01G333700 chr2A 85.366 246 26 10 1055 1295 541775924 541776164 3.310000e-61 246.0
14 TraesCS2B01G333700 chr2A 90.441 136 6 2 2347 2475 540848774 540848639 5.700000e-39 172.0
15 TraesCS2B01G333700 chr2A 97.561 41 1 0 2264 2304 540848736 540848696 2.140000e-08 71.3
16 TraesCS2B01G333700 chr2D 92.828 990 28 15 1312 2268 403347524 403346545 0.000000e+00 1395.0
17 TraesCS2B01G333700 chr2D 92.339 992 52 10 343 1316 403348544 403347559 0.000000e+00 1389.0
18 TraesCS2B01G333700 chr2D 94.556 900 31 9 2555 3439 403346341 403345445 0.000000e+00 1375.0
19 TraesCS2B01G333700 chr2D 89.643 869 60 8 3436 4281 403345378 403344517 0.000000e+00 1079.0
20 TraesCS2B01G333700 chr2D 93.985 266 15 1 1988 2252 403479339 403479604 6.680000e-108 401.0
21 TraesCS2B01G333700 chr2D 91.346 208 18 0 1690 1897 403479015 403479222 7.010000e-73 285.0
22 TraesCS2B01G333700 chr2D 85.366 246 26 9 1055 1295 403478396 403478636 3.310000e-61 246.0
23 TraesCS2B01G333700 chr2D 88.889 171 8 6 2330 2489 403346512 403346342 2.610000e-47 200.0
24 TraesCS2B01G333700 chr2D 97.561 41 1 0 2264 2304 403346457 403346417 2.140000e-08 71.3
25 TraesCS2B01G333700 chr2D 95.238 42 1 1 3671 3712 74156873 74156913 9.950000e-07 65.8
26 TraesCS2B01G333700 chr4D 85.413 569 66 13 1693 2250 28839450 28840012 3.720000e-160 575.0
27 TraesCS2B01G333700 chr4D 82.923 568 76 18 1690 2242 393636552 393637113 3.850000e-135 492.0
28 TraesCS2B01G333700 chr4D 82.583 511 65 19 1088 1578 393635965 393636471 3.060000e-116 429.0
29 TraesCS2B01G333700 chr4D 90.541 222 18 3 1088 1307 28560230 28560450 1.510000e-74 291.0
30 TraesCS2B01G333700 chr4D 90.952 210 19 0 1088 1297 28837079 28837288 2.520000e-72 283.0
31 TraesCS2B01G333700 chr4B 83.009 565 78 17 1692 2245 483334558 483334001 2.980000e-136 496.0
32 TraesCS2B01G333700 chr4B 82.998 547 64 20 1373 1912 41012239 41012763 6.490000e-128 468.0
33 TraesCS2B01G333700 chr4B 92.692 260 17 2 1988 2246 41012876 41013134 1.460000e-99 374.0
34 TraesCS2B01G333700 chr4B 92.344 209 16 0 1088 1296 41010039 41010247 9.010000e-77 298.0
35 TraesCS2B01G333700 chr4B 88.350 206 24 0 1373 1578 483334955 483334750 9.200000e-62 248.0
36 TraesCS2B01G333700 chr4A 83.398 512 67 16 1088 1582 75215126 75214616 3.910000e-125 459.0
37 TraesCS2B01G333700 chr4A 81.782 505 72 15 1097 1582 641451288 641451791 5.160000e-109 405.0
38 TraesCS2B01G333700 chr4A 91.538 260 20 2 1988 2246 574870088 574869830 1.470000e-94 357.0
39 TraesCS2B01G333700 chr4A 90.991 222 18 2 1088 1307 574872617 574872396 9.010000e-77 298.0
40 TraesCS2B01G333700 chr4A 90.909 220 20 0 1693 1912 574870423 574870204 3.240000e-76 296.0
41 TraesCS2B01G333700 chr4A 88.995 209 21 2 1373 1580 574870722 574870515 1.530000e-64 257.0
42 TraesCS2B01G333700 chr4A 77.740 292 63 2 2837 3127 641452494 641452784 1.220000e-40 178.0
43 TraesCS2B01G333700 chr3B 90.190 316 26 4 4 315 3135568 3135254 1.430000e-109 407.0
44 TraesCS2B01G333700 chr3B 88.889 315 29 5 4 315 76517084 76516773 2.420000e-102 383.0
45 TraesCS2B01G333700 chr3B 92.344 209 16 0 1088 1296 9914558 9914766 9.010000e-77 298.0
46 TraesCS2B01G333700 chr5D 89.274 317 30 4 1 314 69325912 69326227 1.120000e-105 394.0
47 TraesCS2B01G333700 chr5D 95.000 40 2 0 3713 3752 556868429 556868390 3.580000e-06 63.9
48 TraesCS2B01G333700 chr5D 94.872 39 2 0 3713 3751 455323362 455323324 1.290000e-05 62.1
49 TraesCS2B01G333700 chr1D 89.744 312 27 4 5 312 16205269 16205579 1.120000e-105 394.0
50 TraesCS2B01G333700 chr1B 89.423 312 30 3 4 313 530955827 530955517 1.450000e-104 390.0
51 TraesCS2B01G333700 chr5B 88.571 315 30 5 4 313 697008565 697008252 1.130000e-100 377.0
52 TraesCS2B01G333700 chr5B 87.619 210 26 0 1373 1582 670067632 670067423 1.190000e-60 244.0
53 TraesCS2B01G333700 chr7D 87.898 314 31 6 1 310 568653852 568654162 3.150000e-96 363.0
54 TraesCS2B01G333700 chr7D 90.909 66 6 0 3679 3744 454519399 454519334 5.900000e-14 89.8
55 TraesCS2B01G333700 chr7A 92.857 70 3 2 3680 3747 502623248 502623317 2.730000e-17 100.0
56 TraesCS2B01G333700 chr7A 88.608 79 8 1 3673 3750 502623320 502623242 1.270000e-15 95.3
57 TraesCS2B01G333700 chr6B 91.176 68 2 1 3677 3744 713878303 713878240 5.900000e-14 89.8
58 TraesCS2B01G333700 chr6B 90.909 66 2 1 3679 3744 713878239 713878300 7.640000e-13 86.1
59 TraesCS2B01G333700 chr6B 94.595 37 2 0 3709 3745 234560609 234560645 1.660000e-04 58.4
60 TraesCS2B01G333700 chr3A 90.196 51 1 3 3713 3760 177025511 177025462 3.580000e-06 63.9
61 TraesCS2B01G333700 chr3A 92.500 40 3 0 3713 3752 337116692 337116653 1.660000e-04 58.4
62 TraesCS2B01G333700 chr3D 92.308 39 3 0 3713 3751 595929950 595929912 5.990000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G333700 chr2B 477526614 477530899 4285 True 2689.533333 7915 100.000000 1 4286 3 chr2B.!!$R2 4285
1 TraesCS2B01G333700 chr2B 477573392 477574609 1217 False 335.333333 401 87.538667 1055 2252 3 chr2B.!!$F3 1197
2 TraesCS2B01G333700 chr2A 540846793 540850501 3708 True 991.860000 2338 92.609200 639 4281 5 chr2A.!!$R1 3642
3 TraesCS2B01G333700 chr2A 541775924 541777117 1193 False 404.000000 562 85.070500 1055 2252 2 chr2A.!!$F1 1197
4 TraesCS2B01G333700 chr2D 403344517 403348544 4027 True 918.216667 1395 92.636000 343 4281 6 chr2D.!!$R1 3938
5 TraesCS2B01G333700 chr2D 403478396 403479604 1208 False 310.666667 401 90.232333 1055 2252 3 chr2D.!!$F2 1197
6 TraesCS2B01G333700 chr4D 393635965 393637113 1148 False 460.500000 492 82.753000 1088 2242 2 chr4D.!!$F3 1154
7 TraesCS2B01G333700 chr4D 28837079 28840012 2933 False 429.000000 575 88.182500 1088 2250 2 chr4D.!!$F2 1162
8 TraesCS2B01G333700 chr4B 41010039 41013134 3095 False 380.000000 468 89.344667 1088 2246 3 chr4B.!!$F1 1158
9 TraesCS2B01G333700 chr4B 483334001 483334955 954 True 372.000000 496 85.679500 1373 2245 2 chr4B.!!$R1 872
10 TraesCS2B01G333700 chr4A 75214616 75215126 510 True 459.000000 459 83.398000 1088 1582 1 chr4A.!!$R1 494
11 TraesCS2B01G333700 chr4A 574869830 574872617 2787 True 302.000000 357 90.608250 1088 2246 4 chr4A.!!$R2 1158
12 TraesCS2B01G333700 chr4A 641451288 641452784 1496 False 291.500000 405 79.761000 1097 3127 2 chr4A.!!$F1 2030

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
554 556 0.033642 GCCTATGTCTTACGGGAGGC 59.966 60.0 0.0 0.0 42.45 4.70 F
2360 5307 0.323957 TGCTCTTCATGTGCTGCTCT 59.676 50.0 0.0 0.0 36.27 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2538 5501 0.035152 ATGCCCGTCAGAGATTTGCA 60.035 50.0 0.0 0.0 0.0 4.08 R
3465 6513 0.969894 ACCGCAGAGCACTTAGAAGT 59.030 50.0 0.0 0.0 40.6 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 8.635765 TTGAAAGATAAACTATTTGGCTGAGT 57.364 30.769 0.00 0.00 0.00 3.41
54 55 8.635765 TGAAAGATAAACTATTTGGCTGAGTT 57.364 30.769 0.00 0.00 34.92 3.01
55 56 8.514594 TGAAAGATAAACTATTTGGCTGAGTTG 58.485 33.333 0.00 0.00 33.75 3.16
56 57 8.409358 AAAGATAAACTATTTGGCTGAGTTGT 57.591 30.769 0.00 0.00 33.75 3.32
57 58 9.515226 AAAGATAAACTATTTGGCTGAGTTGTA 57.485 29.630 0.00 0.00 33.75 2.41
58 59 9.515226 AAGATAAACTATTTGGCTGAGTTGTAA 57.485 29.630 0.00 0.00 33.75 2.41
59 60 9.686683 AGATAAACTATTTGGCTGAGTTGTAAT 57.313 29.630 0.00 0.00 33.75 1.89
63 64 7.303634 ACTATTTGGCTGAGTTGTAATAACG 57.696 36.000 0.00 0.00 0.00 3.18
64 65 7.101054 ACTATTTGGCTGAGTTGTAATAACGA 58.899 34.615 0.00 0.00 0.00 3.85
65 66 6.811253 ATTTGGCTGAGTTGTAATAACGAA 57.189 33.333 0.00 0.00 0.00 3.85
66 67 6.621316 TTTGGCTGAGTTGTAATAACGAAA 57.379 33.333 0.00 0.00 0.00 3.46
67 68 6.811253 TTGGCTGAGTTGTAATAACGAAAT 57.189 33.333 0.00 0.00 0.00 2.17
68 69 6.811253 TGGCTGAGTTGTAATAACGAAATT 57.189 33.333 0.00 0.00 0.00 1.82
69 70 6.607689 TGGCTGAGTTGTAATAACGAAATTG 58.392 36.000 0.00 0.00 0.00 2.32
70 71 6.428465 TGGCTGAGTTGTAATAACGAAATTGA 59.572 34.615 0.00 0.00 0.00 2.57
71 72 7.041030 TGGCTGAGTTGTAATAACGAAATTGAA 60.041 33.333 0.00 0.00 0.00 2.69
72 73 7.270579 GGCTGAGTTGTAATAACGAAATTGAAC 59.729 37.037 0.00 0.00 0.00 3.18
73 74 8.015658 GCTGAGTTGTAATAACGAAATTGAACT 58.984 33.333 0.00 1.96 31.06 3.01
113 114 7.593875 TTTTGTTTGTGTTTGATCTTCTTGG 57.406 32.000 0.00 0.00 0.00 3.61
114 115 5.913137 TGTTTGTGTTTGATCTTCTTGGT 57.087 34.783 0.00 0.00 0.00 3.67
115 116 6.279513 TGTTTGTGTTTGATCTTCTTGGTT 57.720 33.333 0.00 0.00 0.00 3.67
116 117 6.098679 TGTTTGTGTTTGATCTTCTTGGTTG 58.901 36.000 0.00 0.00 0.00 3.77
117 118 5.913137 TTGTGTTTGATCTTCTTGGTTGT 57.087 34.783 0.00 0.00 0.00 3.32
118 119 5.247507 TGTGTTTGATCTTCTTGGTTGTG 57.752 39.130 0.00 0.00 0.00 3.33
119 120 4.704540 TGTGTTTGATCTTCTTGGTTGTGT 59.295 37.500 0.00 0.00 0.00 3.72
120 121 5.184864 TGTGTTTGATCTTCTTGGTTGTGTT 59.815 36.000 0.00 0.00 0.00 3.32
121 122 6.099341 GTGTTTGATCTTCTTGGTTGTGTTT 58.901 36.000 0.00 0.00 0.00 2.83
122 123 6.034898 GTGTTTGATCTTCTTGGTTGTGTTTG 59.965 38.462 0.00 0.00 0.00 2.93
123 124 4.916983 TGATCTTCTTGGTTGTGTTTGG 57.083 40.909 0.00 0.00 0.00 3.28
124 125 4.531854 TGATCTTCTTGGTTGTGTTTGGA 58.468 39.130 0.00 0.00 0.00 3.53
125 126 4.580167 TGATCTTCTTGGTTGTGTTTGGAG 59.420 41.667 0.00 0.00 0.00 3.86
126 127 3.963129 TCTTCTTGGTTGTGTTTGGAGT 58.037 40.909 0.00 0.00 0.00 3.85
127 128 3.694072 TCTTCTTGGTTGTGTTTGGAGTG 59.306 43.478 0.00 0.00 0.00 3.51
128 129 1.748493 TCTTGGTTGTGTTTGGAGTGC 59.252 47.619 0.00 0.00 0.00 4.40
129 130 1.476085 CTTGGTTGTGTTTGGAGTGCA 59.524 47.619 0.00 0.00 0.00 4.57
130 131 1.774110 TGGTTGTGTTTGGAGTGCAT 58.226 45.000 0.00 0.00 0.00 3.96
131 132 2.937519 TGGTTGTGTTTGGAGTGCATA 58.062 42.857 0.00 0.00 0.00 3.14
132 133 3.495331 TGGTTGTGTTTGGAGTGCATAT 58.505 40.909 0.00 0.00 0.00 1.78
133 134 3.255395 TGGTTGTGTTTGGAGTGCATATG 59.745 43.478 0.00 0.00 0.00 1.78
134 135 3.255642 GGTTGTGTTTGGAGTGCATATGT 59.744 43.478 4.29 0.00 0.00 2.29
135 136 4.261994 GGTTGTGTTTGGAGTGCATATGTT 60.262 41.667 4.29 0.00 0.00 2.71
136 137 4.502171 TGTGTTTGGAGTGCATATGTTG 57.498 40.909 4.29 0.00 0.00 3.33
137 138 3.888323 TGTGTTTGGAGTGCATATGTTGT 59.112 39.130 4.29 0.00 0.00 3.32
138 139 4.340666 TGTGTTTGGAGTGCATATGTTGTT 59.659 37.500 4.29 0.00 0.00 2.83
139 140 5.163468 TGTGTTTGGAGTGCATATGTTGTTT 60.163 36.000 4.29 0.00 0.00 2.83
140 141 5.175491 GTGTTTGGAGTGCATATGTTGTTTG 59.825 40.000 4.29 0.00 0.00 2.93
141 142 5.163468 TGTTTGGAGTGCATATGTTGTTTGT 60.163 36.000 4.29 0.00 0.00 2.83
142 143 4.502171 TGGAGTGCATATGTTGTTTGTG 57.498 40.909 4.29 0.00 0.00 3.33
143 144 3.244976 GGAGTGCATATGTTGTTTGTGC 58.755 45.455 4.29 0.00 36.39 4.57
144 145 2.910482 GAGTGCATATGTTGTTTGTGCG 59.090 45.455 4.29 0.00 38.58 5.34
145 146 2.551887 AGTGCATATGTTGTTTGTGCGA 59.448 40.909 4.29 0.00 38.58 5.10
146 147 2.910482 GTGCATATGTTGTTTGTGCGAG 59.090 45.455 4.29 0.00 38.58 5.03
147 148 2.810852 TGCATATGTTGTTTGTGCGAGA 59.189 40.909 4.29 0.00 38.58 4.04
148 149 3.120234 TGCATATGTTGTTTGTGCGAGAG 60.120 43.478 4.29 0.00 38.58 3.20
160 161 2.248724 CGAGAGCGCGCGTAGTAT 59.751 61.111 32.35 13.85 32.43 2.12
161 162 1.368969 CGAGAGCGCGCGTAGTATT 60.369 57.895 32.35 5.81 32.43 1.89
162 163 0.928908 CGAGAGCGCGCGTAGTATTT 60.929 55.000 32.35 4.88 32.43 1.40
163 164 1.197910 GAGAGCGCGCGTAGTATTTT 58.802 50.000 32.35 3.96 0.00 1.82
164 165 1.587034 GAGAGCGCGCGTAGTATTTTT 59.413 47.619 32.35 3.04 0.00 1.94
165 166 1.323534 AGAGCGCGCGTAGTATTTTTG 59.676 47.619 32.35 0.00 0.00 2.44
166 167 1.060122 GAGCGCGCGTAGTATTTTTGT 59.940 47.619 32.35 2.14 0.00 2.83
167 168 2.261345 AGCGCGCGTAGTATTTTTGTA 58.739 42.857 32.35 0.00 0.00 2.41
168 169 2.280708 AGCGCGCGTAGTATTTTTGTAG 59.719 45.455 32.35 0.00 0.00 2.74
169 170 2.611070 CGCGCGTAGTATTTTTGTAGC 58.389 47.619 24.19 0.00 0.00 3.58
171 172 2.611070 CGCGTAGTATTTTTGTAGCGC 58.389 47.619 0.00 0.00 39.90 5.92
172 173 2.595881 CGCGTAGTATTTTTGTAGCGCC 60.596 50.000 2.29 0.00 40.42 6.53
173 174 2.606272 GCGTAGTATTTTTGTAGCGCCT 59.394 45.455 2.29 0.00 38.03 5.52
174 175 3.543460 GCGTAGTATTTTTGTAGCGCCTG 60.543 47.826 2.29 0.00 38.03 4.85
175 176 3.543460 CGTAGTATTTTTGTAGCGCCTGC 60.543 47.826 2.29 0.00 43.24 4.85
186 187 2.817424 CGCCTGCTGGAGCTATCA 59.183 61.111 14.77 0.00 42.66 2.15
187 188 1.593750 CGCCTGCTGGAGCTATCAC 60.594 63.158 14.77 0.00 42.66 3.06
188 189 1.593750 GCCTGCTGGAGCTATCACG 60.594 63.158 14.77 0.00 42.66 4.35
189 190 1.593750 CCTGCTGGAGCTATCACGC 60.594 63.158 2.92 0.00 42.66 5.34
190 191 1.948138 CTGCTGGAGCTATCACGCG 60.948 63.158 3.53 3.53 42.66 6.01
191 192 3.333969 GCTGGAGCTATCACGCGC 61.334 66.667 5.73 0.00 38.21 6.86
192 193 3.026879 CTGGAGCTATCACGCGCG 61.027 66.667 30.96 30.96 34.40 6.86
194 195 4.933064 GGAGCTATCACGCGCGCT 62.933 66.667 32.58 18.19 35.03 5.92
195 196 2.051256 GAGCTATCACGCGCGCTA 60.051 61.111 32.58 19.34 31.96 4.26
196 197 1.657487 GAGCTATCACGCGCGCTAA 60.657 57.895 32.58 16.34 31.96 3.09
197 198 1.206745 GAGCTATCACGCGCGCTAAA 61.207 55.000 32.58 13.43 31.96 1.85
198 199 1.199370 GCTATCACGCGCGCTAAAG 59.801 57.895 32.58 22.60 0.00 1.85
199 200 1.480219 GCTATCACGCGCGCTAAAGT 61.480 55.000 32.58 16.93 0.00 2.66
200 201 0.921347 CTATCACGCGCGCTAAAGTT 59.079 50.000 32.58 5.07 0.00 2.66
201 202 1.323534 CTATCACGCGCGCTAAAGTTT 59.676 47.619 32.58 4.13 0.00 2.66
202 203 1.352114 ATCACGCGCGCTAAAGTTTA 58.648 45.000 32.58 10.06 0.00 2.01
203 204 0.435769 TCACGCGCGCTAAAGTTTAC 59.564 50.000 32.58 0.00 0.00 2.01
204 205 0.162082 CACGCGCGCTAAAGTTTACA 59.838 50.000 32.58 0.00 0.00 2.41
205 206 0.437295 ACGCGCGCTAAAGTTTACAG 59.563 50.000 32.58 11.18 0.00 2.74
206 207 0.852007 CGCGCGCTAAAGTTTACAGC 60.852 55.000 30.48 0.94 0.00 4.40
210 211 3.990546 GCTAAAGTTTACAGCGGCC 57.009 52.632 0.00 0.00 0.00 6.13
211 212 0.096454 GCTAAAGTTTACAGCGGCCG 59.904 55.000 24.05 24.05 0.00 6.13
212 213 0.096454 CTAAAGTTTACAGCGGCCGC 59.904 55.000 42.34 42.34 42.33 6.53
223 224 4.880537 CGGCCGCTGGAGCTAGTG 62.881 72.222 14.67 0.00 39.32 2.74
234 235 4.818835 GCTAGTGCTTTGCGCCGC 62.819 66.667 4.18 0.00 40.23 6.53
235 236 3.422303 CTAGTGCTTTGCGCCGCA 61.422 61.111 8.16 8.16 40.23 5.69
239 240 4.198890 TGCTTTGCGCCGCACAAA 62.199 55.556 13.21 3.07 38.71 2.83
240 241 2.959071 GCTTTGCGCCGCACAAAA 60.959 55.556 13.21 2.18 38.71 2.44
241 242 2.520904 GCTTTGCGCCGCACAAAAA 61.521 52.632 13.21 1.74 38.71 1.94
242 243 1.272423 CTTTGCGCCGCACAAAAAC 59.728 52.632 13.21 0.00 38.71 2.43
243 244 1.416813 CTTTGCGCCGCACAAAAACA 61.417 50.000 13.21 0.00 38.71 2.83
244 245 1.416813 TTTGCGCCGCACAAAAACAG 61.417 50.000 13.21 0.00 38.71 3.16
245 246 2.025441 GCGCCGCACAAAAACAGA 59.975 55.556 3.15 0.00 0.00 3.41
246 247 2.292916 GCGCCGCACAAAAACAGAC 61.293 57.895 3.15 0.00 0.00 3.51
247 248 2.003443 CGCCGCACAAAAACAGACG 61.003 57.895 0.00 0.00 0.00 4.18
248 249 1.353804 GCCGCACAAAAACAGACGA 59.646 52.632 0.00 0.00 0.00 4.20
249 250 0.040425 GCCGCACAAAAACAGACGAT 60.040 50.000 0.00 0.00 0.00 3.73
250 251 1.599419 GCCGCACAAAAACAGACGATT 60.599 47.619 0.00 0.00 0.00 3.34
251 252 2.043411 CCGCACAAAAACAGACGATTG 58.957 47.619 0.00 0.00 0.00 2.67
252 253 2.043411 CGCACAAAAACAGACGATTGG 58.957 47.619 0.00 0.00 0.00 3.16
253 254 1.786579 GCACAAAAACAGACGATTGGC 59.213 47.619 0.00 0.00 0.00 4.52
255 256 1.052287 CAAAAACAGACGATTGGCGC 58.948 50.000 0.00 0.00 46.04 6.53
256 257 0.385473 AAAAACAGACGATTGGCGCG 60.385 50.000 0.00 0.00 46.04 6.86
257 258 2.780149 AAAACAGACGATTGGCGCGC 62.780 55.000 25.94 25.94 46.04 6.86
258 259 4.742201 ACAGACGATTGGCGCGCT 62.742 61.111 32.29 11.92 46.04 5.92
259 260 4.214383 CAGACGATTGGCGCGCTG 62.214 66.667 32.29 14.95 46.04 5.18
269 270 3.319316 GCGCGCTGCAAACGTTTT 61.319 55.556 26.67 0.00 45.45 2.43
270 271 2.855280 GCGCGCTGCAAACGTTTTT 61.855 52.632 26.67 0.00 45.45 1.94
299 300 4.688419 CGCGTTGGGCAGCTGTTG 62.688 66.667 16.64 0.29 43.84 3.33
300 301 4.347453 GCGTTGGGCAGCTGTTGG 62.347 66.667 16.64 0.46 42.87 3.77
301 302 2.594303 CGTTGGGCAGCTGTTGGA 60.594 61.111 16.64 0.00 0.00 3.53
302 303 2.620112 CGTTGGGCAGCTGTTGGAG 61.620 63.158 16.64 0.00 0.00 3.86
303 304 1.228245 GTTGGGCAGCTGTTGGAGA 60.228 57.895 16.64 0.00 0.00 3.71
304 305 0.610232 GTTGGGCAGCTGTTGGAGAT 60.610 55.000 16.64 0.00 0.00 2.75
305 306 0.609957 TTGGGCAGCTGTTGGAGATG 60.610 55.000 16.64 0.00 41.37 2.90
309 310 3.857217 CAGCTGTTGGAGATGCTCT 57.143 52.632 5.25 0.00 29.56 4.09
310 311 2.975732 CAGCTGTTGGAGATGCTCTA 57.024 50.000 5.25 0.00 29.56 2.43
311 312 3.257469 CAGCTGTTGGAGATGCTCTAA 57.743 47.619 5.25 0.00 29.56 2.10
312 313 3.196463 CAGCTGTTGGAGATGCTCTAAG 58.804 50.000 5.25 0.00 31.92 2.18
313 314 1.939255 GCTGTTGGAGATGCTCTAAGC 59.061 52.381 0.00 0.00 42.82 3.09
328 329 5.523369 GCTCTAAGCAAGTCAAATTTGTGT 58.477 37.500 17.47 3.85 41.89 3.72
329 330 5.400485 GCTCTAAGCAAGTCAAATTTGTGTG 59.600 40.000 17.47 14.02 41.89 3.82
330 331 6.691754 TCTAAGCAAGTCAAATTTGTGTGA 57.308 33.333 17.47 0.00 0.00 3.58
331 332 7.275888 TCTAAGCAAGTCAAATTTGTGTGAT 57.724 32.000 17.47 10.04 0.00 3.06
332 333 7.140705 TCTAAGCAAGTCAAATTTGTGTGATG 58.859 34.615 17.47 11.45 0.00 3.07
333 334 5.266733 AGCAAGTCAAATTTGTGTGATGT 57.733 34.783 17.47 0.00 0.00 3.06
334 335 5.663456 AGCAAGTCAAATTTGTGTGATGTT 58.337 33.333 17.47 6.84 0.00 2.71
335 336 6.108015 AGCAAGTCAAATTTGTGTGATGTTT 58.892 32.000 17.47 0.68 0.00 2.83
336 337 6.036300 AGCAAGTCAAATTTGTGTGATGTTTG 59.964 34.615 17.47 11.58 0.00 2.93
337 338 6.183360 GCAAGTCAAATTTGTGTGATGTTTGT 60.183 34.615 17.47 0.00 32.97 2.83
338 339 7.009999 GCAAGTCAAATTTGTGTGATGTTTGTA 59.990 33.333 17.47 0.00 32.97 2.41
339 340 7.985634 AGTCAAATTTGTGTGATGTTTGTAC 57.014 32.000 17.47 4.20 32.97 2.90
340 341 7.542890 AGTCAAATTTGTGTGATGTTTGTACA 58.457 30.769 17.47 0.00 38.95 2.90
341 342 8.031864 AGTCAAATTTGTGTGATGTTTGTACAA 58.968 29.630 17.47 3.59 37.91 2.41
346 347 5.940192 TGTGTGATGTTTGTACAAGGATC 57.060 39.130 8.56 13.58 37.91 3.36
351 352 6.873605 TGTGATGTTTGTACAAGGATCTACAG 59.126 38.462 20.87 0.00 37.91 2.74
356 357 8.514330 TGTTTGTACAAGGATCTACAGTTTTT 57.486 30.769 8.56 0.00 0.00 1.94
365 366 9.319143 CAAGGATCTACAGTTTTTACTATCAGG 57.681 37.037 0.00 0.00 0.00 3.86
366 367 7.501844 AGGATCTACAGTTTTTACTATCAGGC 58.498 38.462 0.00 0.00 0.00 4.85
382 383 8.366359 ACTATCAGGCTGTATTTGGAATTTTT 57.634 30.769 15.27 0.00 0.00 1.94
437 438 7.607250 AGAATATACATGAGTAAGCTACCAGC 58.393 38.462 0.00 0.00 35.03 4.85
457 458 2.497273 GCTATTGCAATTGGAAGGTGGT 59.503 45.455 18.75 3.46 39.41 4.16
460 461 2.079170 TGCAATTGGAAGGTGGTCAA 57.921 45.000 7.72 0.00 0.00 3.18
476 477 2.693074 GGTCAATTTGGTCTGTTGGTGT 59.307 45.455 0.00 0.00 0.00 4.16
495 496 4.082300 GGTGTAACATGGCATGATTTCACA 60.082 41.667 32.74 22.07 39.98 3.58
496 497 4.858692 GTGTAACATGGCATGATTTCACAC 59.141 41.667 32.74 27.12 36.32 3.82
499 500 4.445452 ACATGGCATGATTTCACACTTC 57.555 40.909 32.74 0.00 0.00 3.01
500 501 4.084287 ACATGGCATGATTTCACACTTCT 58.916 39.130 32.74 3.47 0.00 2.85
537 539 2.010145 TGCATGTCTAGAGTTTCGCC 57.990 50.000 0.00 0.00 0.00 5.54
538 540 1.550524 TGCATGTCTAGAGTTTCGCCT 59.449 47.619 0.00 0.00 0.00 5.52
548 550 4.030134 AGAGTTTCGCCTATGTCTTACG 57.970 45.455 0.00 0.00 0.00 3.18
549 551 3.114065 GAGTTTCGCCTATGTCTTACGG 58.886 50.000 0.00 0.00 0.00 4.02
554 556 0.033642 GCCTATGTCTTACGGGAGGC 59.966 60.000 0.00 0.00 42.45 4.70
572 574 0.885196 GCCGTTTGGTCATTGCCTAA 59.115 50.000 0.00 0.00 37.67 2.69
582 584 2.031682 GTCATTGCCTAATGCCTAAGCG 60.032 50.000 0.00 0.00 42.71 4.68
658 661 3.765026 TCAGAACGCAAAAGACAAAACC 58.235 40.909 0.00 0.00 0.00 3.27
724 732 3.222855 AGCAGATCGGGCGAGAGG 61.223 66.667 6.74 0.00 36.08 3.69
728 736 3.219928 GATCGGGCGAGAGGAGCA 61.220 66.667 0.00 0.00 36.08 4.26
870 878 2.617308 CGCACCGTCCTCTCTTATAGAA 59.383 50.000 0.00 0.00 32.46 2.10
876 884 5.950549 ACCGTCCTCTCTTATAGAACAAGAA 59.049 40.000 0.00 0.00 32.46 2.52
892 900 8.706322 AGAACAAGAACCACCATTAATTAGTT 57.294 30.769 0.00 0.00 0.00 2.24
893 901 8.793592 AGAACAAGAACCACCATTAATTAGTTC 58.206 33.333 0.00 0.00 35.08 3.01
896 904 7.176690 ACAAGAACCACCATTAATTAGTTCCAG 59.823 37.037 8.58 5.62 35.36 3.86
971 991 3.403057 CGACACACGGCGAACTGG 61.403 66.667 16.62 0.08 38.46 4.00
978 998 4.379243 CGGCGAACTGGTCCAGCT 62.379 66.667 19.40 6.65 34.37 4.24
1025 1045 2.099652 TTGTCCAGGGCACAGACGAG 62.100 60.000 0.00 0.00 33.09 4.18
1320 1383 9.502145 GTATCTATCATTTCGTTTTTGATGCAA 57.498 29.630 0.00 0.00 32.58 4.08
1599 4342 1.006220 TGCGAATCGAGCACACAGT 60.006 52.632 6.91 0.00 40.01 3.55
1600 4343 1.008875 TGCGAATCGAGCACACAGTC 61.009 55.000 6.91 0.00 40.01 3.51
1729 4610 2.793946 GCGCGGTACTTCGAGGTA 59.206 61.111 8.83 2.84 0.00 3.08
1941 4822 5.927281 ATCTTATGCCAAAAACTGCAGAT 57.073 34.783 23.35 5.41 41.46 2.90
1955 4853 9.499479 AAAAACTGCAGATATGGTAGAGATATG 57.501 33.333 23.35 0.00 0.00 1.78
1975 4873 5.998454 ATGATTGATCGATCTGTTGGTTC 57.002 39.130 25.02 11.72 0.00 3.62
1976 4874 4.191544 TGATTGATCGATCTGTTGGTTCC 58.808 43.478 25.02 5.99 0.00 3.62
2268 5203 4.492160 ACCGTGCGCGTCGATCAT 62.492 61.111 22.54 5.90 36.15 2.45
2270 5205 2.054840 CGTGCGCGTCGATCATTG 60.055 61.111 17.50 0.00 0.00 2.82
2271 5206 2.350091 GTGCGCGTCGATCATTGC 60.350 61.111 8.43 0.00 0.00 3.56
2276 5211 3.388134 CGTCGATCATTGCGCAGT 58.612 55.556 11.31 4.28 0.00 4.40
2277 5212 2.577225 CGTCGATCATTGCGCAGTA 58.423 52.632 11.31 0.00 0.00 2.74
2278 5213 1.131771 CGTCGATCATTGCGCAGTAT 58.868 50.000 11.31 5.47 0.00 2.12
2279 5214 1.522676 CGTCGATCATTGCGCAGTATT 59.477 47.619 11.31 0.00 0.00 1.89
2280 5215 2.724174 CGTCGATCATTGCGCAGTATTA 59.276 45.455 11.31 0.00 0.00 0.98
2281 5216 3.364920 CGTCGATCATTGCGCAGTATTAT 59.635 43.478 11.31 0.00 0.00 1.28
2282 5217 4.489365 CGTCGATCATTGCGCAGTATTATC 60.489 45.833 11.31 8.12 0.00 1.75
2283 5218 4.385748 GTCGATCATTGCGCAGTATTATCA 59.614 41.667 11.31 0.00 0.00 2.15
2284 5219 4.987912 TCGATCATTGCGCAGTATTATCAA 59.012 37.500 11.31 0.00 0.00 2.57
2285 5220 5.075448 CGATCATTGCGCAGTATTATCAAC 58.925 41.667 11.31 0.00 0.00 3.18
2286 5221 5.107337 CGATCATTGCGCAGTATTATCAACT 60.107 40.000 11.31 0.00 0.00 3.16
2287 5222 5.657470 TCATTGCGCAGTATTATCAACTC 57.343 39.130 11.31 0.00 0.00 3.01
2288 5223 5.115480 TCATTGCGCAGTATTATCAACTCA 58.885 37.500 11.31 0.00 0.00 3.41
2289 5224 5.759763 TCATTGCGCAGTATTATCAACTCAT 59.240 36.000 11.31 0.00 0.00 2.90
2290 5225 5.657470 TTGCGCAGTATTATCAACTCATC 57.343 39.130 11.31 0.00 0.00 2.92
2291 5226 4.058124 TGCGCAGTATTATCAACTCATCC 58.942 43.478 5.66 0.00 0.00 3.51
2292 5227 3.121944 GCGCAGTATTATCAACTCATCCG 59.878 47.826 0.30 0.00 0.00 4.18
2293 5228 4.299155 CGCAGTATTATCAACTCATCCGT 58.701 43.478 0.00 0.00 0.00 4.69
2294 5229 4.383052 CGCAGTATTATCAACTCATCCGTC 59.617 45.833 0.00 0.00 0.00 4.79
2295 5230 5.533482 GCAGTATTATCAACTCATCCGTCT 58.467 41.667 0.00 0.00 0.00 4.18
2296 5231 5.631512 GCAGTATTATCAACTCATCCGTCTC 59.368 44.000 0.00 0.00 0.00 3.36
2297 5232 5.853810 CAGTATTATCAACTCATCCGTCTCG 59.146 44.000 0.00 0.00 0.00 4.04
2308 5243 4.379221 CGTCTCGGATTCGGTGTC 57.621 61.111 0.00 0.00 36.95 3.67
2309 5244 1.582937 CGTCTCGGATTCGGTGTCG 60.583 63.158 0.00 0.00 36.95 4.35
2310 5245 1.798735 GTCTCGGATTCGGTGTCGA 59.201 57.895 0.00 0.00 44.44 4.20
2311 5246 0.381089 GTCTCGGATTCGGTGTCGAT 59.619 55.000 0.00 0.00 45.51 3.59
2312 5247 0.661552 TCTCGGATTCGGTGTCGATC 59.338 55.000 0.00 0.00 45.51 3.69
2313 5248 0.380733 CTCGGATTCGGTGTCGATCA 59.619 55.000 0.00 0.00 45.51 2.92
2327 5274 6.084277 GGTGTCGATCATTGGTTAGTTTTTC 58.916 40.000 0.00 0.00 0.00 2.29
2328 5275 6.084277 GTGTCGATCATTGGTTAGTTTTTCC 58.916 40.000 0.00 0.00 0.00 3.13
2343 5290 5.831997 AGTTTTTCCAGTAAGTTGATGTGC 58.168 37.500 0.00 0.00 0.00 4.57
2360 5307 0.323957 TGCTCTTCATGTGCTGCTCT 59.676 50.000 0.00 0.00 36.27 4.09
2361 5308 0.727970 GCTCTTCATGTGCTGCTCTG 59.272 55.000 0.00 0.00 32.89 3.35
2363 5310 2.424557 CTCTTCATGTGCTGCTCTGTT 58.575 47.619 0.00 0.00 0.00 3.16
2364 5311 2.148768 TCTTCATGTGCTGCTCTGTTG 58.851 47.619 0.00 0.00 0.00 3.33
2366 5313 0.397564 TCATGTGCTGCTCTGTTGGA 59.602 50.000 0.00 0.00 0.00 3.53
2367 5314 0.520404 CATGTGCTGCTCTGTTGGAC 59.480 55.000 0.00 0.00 0.00 4.02
2474 5436 6.653740 TGTTCGTTTTTGTTGGGGTTTTATTT 59.346 30.769 0.00 0.00 0.00 1.40
2475 5437 6.905544 TCGTTTTTGTTGGGGTTTTATTTC 57.094 33.333 0.00 0.00 0.00 2.17
2476 5438 5.816258 TCGTTTTTGTTGGGGTTTTATTTCC 59.184 36.000 0.00 0.00 0.00 3.13
2477 5439 5.007823 CGTTTTTGTTGGGGTTTTATTTCCC 59.992 40.000 0.00 0.00 42.73 3.97
2489 5452 5.007234 GGTTTTATTTCCCAAAGTGTTGCAC 59.993 40.000 0.00 0.00 33.01 4.57
2490 5453 9.943466 GGGTTTTATTTCCCAAAGTGTTGCACT 62.943 40.741 0.00 0.00 43.67 4.40
2491 5454 6.716934 TTTATTTCCCAAAGTGTTGCACTA 57.283 33.333 1.97 0.00 44.62 2.74
2492 5455 4.584327 ATTTCCCAAAGTGTTGCACTAC 57.416 40.909 1.97 0.00 44.62 2.73
2493 5456 3.290948 TTCCCAAAGTGTTGCACTACT 57.709 42.857 1.97 0.00 44.62 2.57
2494 5457 2.571212 TCCCAAAGTGTTGCACTACTG 58.429 47.619 1.97 3.81 44.62 2.74
2495 5458 2.092646 TCCCAAAGTGTTGCACTACTGT 60.093 45.455 1.97 0.00 44.62 3.55
2496 5459 2.687935 CCCAAAGTGTTGCACTACTGTT 59.312 45.455 1.97 0.00 44.62 3.16
2497 5460 3.489059 CCCAAAGTGTTGCACTACTGTTG 60.489 47.826 1.97 9.02 44.62 3.33
2498 5461 3.108144 CAAAGTGTTGCACTACTGTTGC 58.892 45.455 1.97 0.00 44.62 4.17
2499 5462 2.036958 AGTGTTGCACTACTGTTGCA 57.963 45.000 3.16 3.16 43.46 4.08
2500 5463 2.364632 AGTGTTGCACTACTGTTGCAA 58.635 42.857 14.13 14.13 43.46 4.08
2505 5468 3.624326 TGCACTACTGTTGCAAATCAC 57.376 42.857 0.00 0.00 35.46 3.06
2506 5469 3.213506 TGCACTACTGTTGCAAATCACT 58.786 40.909 0.00 0.00 35.46 3.41
2507 5470 3.003585 TGCACTACTGTTGCAAATCACTG 59.996 43.478 0.00 0.00 35.46 3.66
2508 5471 3.250762 GCACTACTGTTGCAAATCACTGA 59.749 43.478 0.00 0.00 0.00 3.41
2509 5472 4.083110 GCACTACTGTTGCAAATCACTGAT 60.083 41.667 0.00 0.00 0.00 2.90
2510 5473 5.388111 CACTACTGTTGCAAATCACTGATG 58.612 41.667 0.00 0.00 0.00 3.07
2511 5474 5.179929 CACTACTGTTGCAAATCACTGATGA 59.820 40.000 0.00 0.00 39.83 2.92
2512 5475 5.764686 ACTACTGTTGCAAATCACTGATGAA 59.235 36.000 0.00 0.00 38.69 2.57
2513 5476 5.717078 ACTGTTGCAAATCACTGATGAAT 57.283 34.783 0.00 0.00 38.69 2.57
2514 5477 6.822667 ACTGTTGCAAATCACTGATGAATA 57.177 33.333 0.00 0.00 38.69 1.75
2515 5478 7.400599 ACTGTTGCAAATCACTGATGAATAT 57.599 32.000 0.00 0.00 38.69 1.28
2516 5479 7.478322 ACTGTTGCAAATCACTGATGAATATC 58.522 34.615 0.00 0.00 38.69 1.63
2517 5480 7.338703 ACTGTTGCAAATCACTGATGAATATCT 59.661 33.333 0.00 0.00 38.69 1.98
2518 5481 7.477494 TGTTGCAAATCACTGATGAATATCTG 58.523 34.615 0.00 0.00 38.69 2.90
2519 5482 6.068473 TGCAAATCACTGATGAATATCTGC 57.932 37.500 0.00 0.00 38.69 4.26
2520 5483 5.591067 TGCAAATCACTGATGAATATCTGCA 59.409 36.000 0.00 0.00 38.69 4.41
2521 5484 5.913514 GCAAATCACTGATGAATATCTGCAC 59.086 40.000 0.00 0.00 38.69 4.57
2522 5485 6.459161 GCAAATCACTGATGAATATCTGCACA 60.459 38.462 0.00 0.00 38.69 4.57
2523 5486 7.649057 CAAATCACTGATGAATATCTGCACAT 58.351 34.615 0.00 0.00 38.69 3.21
2524 5487 6.803154 ATCACTGATGAATATCTGCACATG 57.197 37.500 0.00 0.00 38.69 3.21
2525 5488 5.677567 TCACTGATGAATATCTGCACATGT 58.322 37.500 0.00 0.00 36.15 3.21
2526 5489 5.526111 TCACTGATGAATATCTGCACATGTG 59.474 40.000 21.83 21.83 36.15 3.21
2527 5490 5.296035 CACTGATGAATATCTGCACATGTGT 59.704 40.000 26.01 9.67 36.15 3.72
2528 5491 6.480981 CACTGATGAATATCTGCACATGTGTA 59.519 38.462 26.01 21.19 36.15 2.90
2529 5492 7.011669 CACTGATGAATATCTGCACATGTGTAA 59.988 37.037 26.01 14.35 36.15 2.41
2530 5493 7.718314 ACTGATGAATATCTGCACATGTGTAAT 59.282 33.333 26.01 18.38 36.15 1.89
2531 5494 7.867752 TGATGAATATCTGCACATGTGTAATG 58.132 34.615 26.01 11.79 34.31 1.90
2532 5495 7.499895 TGATGAATATCTGCACATGTGTAATGT 59.500 33.333 26.01 13.20 34.31 2.71
2540 5503 4.952445 CACATGTGTAATGTGTTGTTGC 57.048 40.909 18.03 0.00 43.11 4.17
2541 5504 4.357996 CACATGTGTAATGTGTTGTTGCA 58.642 39.130 18.03 0.00 43.11 4.08
2542 5505 4.802563 CACATGTGTAATGTGTTGTTGCAA 59.197 37.500 18.03 0.00 43.11 4.08
2543 5506 5.290400 CACATGTGTAATGTGTTGTTGCAAA 59.710 36.000 18.03 0.00 43.11 3.68
2544 5507 6.018913 CACATGTGTAATGTGTTGTTGCAAAT 60.019 34.615 18.03 0.00 43.11 2.32
2545 5508 6.200665 ACATGTGTAATGTGTTGTTGCAAATC 59.799 34.615 0.00 0.00 0.00 2.17
2546 5509 5.900425 TGTGTAATGTGTTGTTGCAAATCT 58.100 33.333 0.00 0.00 0.00 2.40
2547 5510 5.976534 TGTGTAATGTGTTGTTGCAAATCTC 59.023 36.000 0.00 0.00 0.00 2.75
2548 5511 6.183360 TGTGTAATGTGTTGTTGCAAATCTCT 60.183 34.615 0.00 0.00 0.00 3.10
2549 5512 6.142798 GTGTAATGTGTTGTTGCAAATCTCTG 59.857 38.462 0.00 0.00 0.00 3.35
2550 5513 5.518848 AATGTGTTGTTGCAAATCTCTGA 57.481 34.783 0.00 0.00 0.00 3.27
2551 5514 4.291540 TGTGTTGTTGCAAATCTCTGAC 57.708 40.909 0.00 0.00 0.00 3.51
2552 5515 3.242706 TGTGTTGTTGCAAATCTCTGACG 60.243 43.478 0.00 0.00 0.00 4.35
2553 5516 2.290367 TGTTGTTGCAAATCTCTGACGG 59.710 45.455 0.00 0.00 0.00 4.79
2580 5543 2.728690 TTGCCTTGTGCTTTATGCTG 57.271 45.000 0.00 0.00 43.37 4.41
2601 5567 2.029124 GGTTTTGTTTCTGCAAGCAACG 59.971 45.455 0.00 0.00 43.23 4.10
2627 5593 5.339990 ACAAACATGTGTTGTAGCTTTGTC 58.660 37.500 18.63 0.00 37.68 3.18
2637 5603 1.127582 GTAGCTTTGTCTCTGCAAGCG 59.872 52.381 0.00 0.00 32.15 4.68
2709 5675 6.067217 AGTTTGTTAGGATCCTGCTTGTAT 57.933 37.500 25.28 2.76 0.00 2.29
2714 5680 5.125417 TGTTAGGATCCTGCTTGTATTTTGC 59.875 40.000 25.28 0.26 0.00 3.68
2749 5715 4.622740 GCATGTTCTTTCACATTGCTAACC 59.377 41.667 0.00 0.00 35.03 2.85
3093 6065 1.741401 CATGCGTGTGGTCATCCGT 60.741 57.895 0.00 0.00 36.30 4.69
3219 6191 3.953612 TGAAGAAGACAGCACACCAAATT 59.046 39.130 0.00 0.00 0.00 1.82
3346 6320 2.446341 CCGAGTTCTTCTTCGGCAC 58.554 57.895 0.00 0.00 38.95 5.01
3393 6371 9.807649 TTTAGTAGTTTCTTCGAGTAAGTGTTT 57.192 29.630 0.00 0.00 36.51 2.83
3483 6531 1.203523 AGACTTCTAAGTGCTCTGCGG 59.796 52.381 0.00 0.00 39.88 5.69
3505 6554 2.526110 GGTTGGGGTTTGAGGGCT 59.474 61.111 0.00 0.00 0.00 5.19
3520 6569 0.605589 GGGCTAAGAACAACACCGCT 60.606 55.000 0.00 0.00 0.00 5.52
3551 6600 1.751351 CTTCTGTCACCTCGCCTCATA 59.249 52.381 0.00 0.00 0.00 2.15
3601 6650 3.989167 CACATCACCGATGCAACAAATTT 59.011 39.130 3.90 0.00 43.15 1.82
3692 6742 5.205056 CCAACTTATCTACTCCCTCTGTCT 58.795 45.833 0.00 0.00 0.00 3.41
3834 6904 2.428902 GCGCGCTTTGTTGCATCA 60.429 55.556 26.67 0.00 0.00 3.07
3874 6944 7.589221 GCTATGCATGAAGAAATAGTTGCTTAC 59.411 37.037 10.16 0.00 0.00 2.34
3888 6958 5.040635 AGTTGCTTACGAAATTGTTTGGTG 58.959 37.500 0.00 0.00 33.54 4.17
3950 7020 7.807907 CACCCCGTAATTCATAATTCAAATAGC 59.192 37.037 0.00 0.00 32.38 2.97
4026 7097 5.185249 ACATGCCCGGAGTAATAGTACATAG 59.815 44.000 0.73 0.00 32.12 2.23
4154 7228 2.735772 CGTAGCCATGGGAGCACCT 61.736 63.158 15.13 3.00 41.11 4.00
4158 7232 2.124983 CCATGGGAGCACCTCACG 60.125 66.667 2.85 0.00 36.56 4.35
4212 7288 5.888412 AGCATGACAAATCAAACGTTTTC 57.112 34.783 11.66 6.00 38.69 2.29
4215 7291 7.144661 AGCATGACAAATCAAACGTTTTCATA 58.855 30.769 18.34 4.49 38.69 2.15
4273 7349 1.468520 ACGAGCATGACAATTTTCGGG 59.531 47.619 0.00 0.00 32.77 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.247861 ACTCAGCCAAATAGTTTATCTTTCAAT 57.752 29.630 0.00 0.00 0.00 2.57
28 29 8.635765 ACTCAGCCAAATAGTTTATCTTTCAA 57.364 30.769 0.00 0.00 0.00 2.69
29 30 8.514594 CAACTCAGCCAAATAGTTTATCTTTCA 58.485 33.333 0.00 0.00 31.21 2.69
30 31 8.515414 ACAACTCAGCCAAATAGTTTATCTTTC 58.485 33.333 0.00 0.00 31.21 2.62
31 32 8.409358 ACAACTCAGCCAAATAGTTTATCTTT 57.591 30.769 0.00 0.00 31.21 2.52
32 33 9.515226 TTACAACTCAGCCAAATAGTTTATCTT 57.485 29.630 0.00 0.00 31.21 2.40
33 34 9.686683 ATTACAACTCAGCCAAATAGTTTATCT 57.313 29.630 0.00 0.00 31.21 1.98
37 38 8.234546 CGTTATTACAACTCAGCCAAATAGTTT 58.765 33.333 0.00 0.00 31.21 2.66
38 39 7.604927 TCGTTATTACAACTCAGCCAAATAGTT 59.395 33.333 0.00 0.00 33.82 2.24
39 40 7.101054 TCGTTATTACAACTCAGCCAAATAGT 58.899 34.615 0.00 0.00 0.00 2.12
40 41 7.534085 TCGTTATTACAACTCAGCCAAATAG 57.466 36.000 0.00 0.00 0.00 1.73
41 42 7.908827 TTCGTTATTACAACTCAGCCAAATA 57.091 32.000 0.00 0.00 0.00 1.40
42 43 6.811253 TTCGTTATTACAACTCAGCCAAAT 57.189 33.333 0.00 0.00 0.00 2.32
43 44 6.621316 TTTCGTTATTACAACTCAGCCAAA 57.379 33.333 0.00 0.00 0.00 3.28
44 45 6.811253 ATTTCGTTATTACAACTCAGCCAA 57.189 33.333 0.00 0.00 0.00 4.52
45 46 6.428465 TCAATTTCGTTATTACAACTCAGCCA 59.572 34.615 0.00 0.00 0.00 4.75
46 47 6.837992 TCAATTTCGTTATTACAACTCAGCC 58.162 36.000 0.00 0.00 0.00 4.85
47 48 8.015658 AGTTCAATTTCGTTATTACAACTCAGC 58.984 33.333 0.00 0.00 0.00 4.26
87 88 9.311916 CCAAGAAGATCAAACACAAACAAAATA 57.688 29.630 0.00 0.00 0.00 1.40
88 89 7.823799 ACCAAGAAGATCAAACACAAACAAAAT 59.176 29.630 0.00 0.00 0.00 1.82
89 90 7.158021 ACCAAGAAGATCAAACACAAACAAAA 58.842 30.769 0.00 0.00 0.00 2.44
90 91 6.696411 ACCAAGAAGATCAAACACAAACAAA 58.304 32.000 0.00 0.00 0.00 2.83
91 92 6.279513 ACCAAGAAGATCAAACACAAACAA 57.720 33.333 0.00 0.00 0.00 2.83
92 93 5.913137 ACCAAGAAGATCAAACACAAACA 57.087 34.783 0.00 0.00 0.00 2.83
93 94 6.034898 CACAACCAAGAAGATCAAACACAAAC 59.965 38.462 0.00 0.00 0.00 2.93
94 95 6.098679 CACAACCAAGAAGATCAAACACAAA 58.901 36.000 0.00 0.00 0.00 2.83
95 96 5.184864 ACACAACCAAGAAGATCAAACACAA 59.815 36.000 0.00 0.00 0.00 3.33
96 97 4.704540 ACACAACCAAGAAGATCAAACACA 59.295 37.500 0.00 0.00 0.00 3.72
97 98 5.248870 ACACAACCAAGAAGATCAAACAC 57.751 39.130 0.00 0.00 0.00 3.32
98 99 5.913137 AACACAACCAAGAAGATCAAACA 57.087 34.783 0.00 0.00 0.00 2.83
99 100 5.519927 CCAAACACAACCAAGAAGATCAAAC 59.480 40.000 0.00 0.00 0.00 2.93
100 101 5.420421 TCCAAACACAACCAAGAAGATCAAA 59.580 36.000 0.00 0.00 0.00 2.69
101 102 4.952957 TCCAAACACAACCAAGAAGATCAA 59.047 37.500 0.00 0.00 0.00 2.57
102 103 4.531854 TCCAAACACAACCAAGAAGATCA 58.468 39.130 0.00 0.00 0.00 2.92
103 104 4.580580 ACTCCAAACACAACCAAGAAGATC 59.419 41.667 0.00 0.00 0.00 2.75
104 105 4.339247 CACTCCAAACACAACCAAGAAGAT 59.661 41.667 0.00 0.00 0.00 2.40
105 106 3.694072 CACTCCAAACACAACCAAGAAGA 59.306 43.478 0.00 0.00 0.00 2.87
106 107 3.734902 GCACTCCAAACACAACCAAGAAG 60.735 47.826 0.00 0.00 0.00 2.85
107 108 2.165437 GCACTCCAAACACAACCAAGAA 59.835 45.455 0.00 0.00 0.00 2.52
108 109 1.748493 GCACTCCAAACACAACCAAGA 59.252 47.619 0.00 0.00 0.00 3.02
109 110 1.476085 TGCACTCCAAACACAACCAAG 59.524 47.619 0.00 0.00 0.00 3.61
110 111 1.550327 TGCACTCCAAACACAACCAA 58.450 45.000 0.00 0.00 0.00 3.67
111 112 1.774110 ATGCACTCCAAACACAACCA 58.226 45.000 0.00 0.00 0.00 3.67
112 113 3.255642 ACATATGCACTCCAAACACAACC 59.744 43.478 1.58 0.00 0.00 3.77
113 114 4.503741 ACATATGCACTCCAAACACAAC 57.496 40.909 1.58 0.00 0.00 3.32
114 115 4.340666 ACAACATATGCACTCCAAACACAA 59.659 37.500 1.58 0.00 0.00 3.33
115 116 3.888323 ACAACATATGCACTCCAAACACA 59.112 39.130 1.58 0.00 0.00 3.72
116 117 4.503741 ACAACATATGCACTCCAAACAC 57.496 40.909 1.58 0.00 0.00 3.32
117 118 5.163468 ACAAACAACATATGCACTCCAAACA 60.163 36.000 1.58 0.00 0.00 2.83
118 119 5.175491 CACAAACAACATATGCACTCCAAAC 59.825 40.000 1.58 0.00 0.00 2.93
119 120 5.288015 CACAAACAACATATGCACTCCAAA 58.712 37.500 1.58 0.00 0.00 3.28
120 121 4.795635 GCACAAACAACATATGCACTCCAA 60.796 41.667 1.58 0.00 36.30 3.53
121 122 3.305267 GCACAAACAACATATGCACTCCA 60.305 43.478 1.58 0.00 36.30 3.86
122 123 3.244976 GCACAAACAACATATGCACTCC 58.755 45.455 1.58 0.00 36.30 3.85
123 124 2.910482 CGCACAAACAACATATGCACTC 59.090 45.455 1.58 0.00 36.02 3.51
124 125 2.551887 TCGCACAAACAACATATGCACT 59.448 40.909 1.58 0.00 36.02 4.40
125 126 2.910482 CTCGCACAAACAACATATGCAC 59.090 45.455 1.58 0.00 36.02 4.57
126 127 2.810852 TCTCGCACAAACAACATATGCA 59.189 40.909 1.58 0.00 36.02 3.96
127 128 3.419915 CTCTCGCACAAACAACATATGC 58.580 45.455 1.58 0.00 0.00 3.14
128 129 3.419915 GCTCTCGCACAAACAACATATG 58.580 45.455 0.00 0.00 35.78 1.78
129 130 2.094258 CGCTCTCGCACAAACAACATAT 59.906 45.455 0.00 0.00 35.30 1.78
130 131 1.459209 CGCTCTCGCACAAACAACATA 59.541 47.619 0.00 0.00 35.30 2.29
131 132 0.235665 CGCTCTCGCACAAACAACAT 59.764 50.000 0.00 0.00 35.30 2.71
132 133 1.641140 CGCTCTCGCACAAACAACA 59.359 52.632 0.00 0.00 35.30 3.33
133 134 4.496898 CGCTCTCGCACAAACAAC 57.503 55.556 0.00 0.00 35.30 3.32
143 144 0.928908 AAATACTACGCGCGCTCTCG 60.929 55.000 32.58 16.18 39.07 4.04
144 145 1.197910 AAAATACTACGCGCGCTCTC 58.802 50.000 32.58 0.00 0.00 3.20
145 146 1.323534 CAAAAATACTACGCGCGCTCT 59.676 47.619 32.58 14.00 0.00 4.09
146 147 1.060122 ACAAAAATACTACGCGCGCTC 59.940 47.619 32.58 0.59 0.00 5.03
147 148 1.073177 ACAAAAATACTACGCGCGCT 58.927 45.000 32.58 19.60 0.00 5.92
148 149 2.611070 CTACAAAAATACTACGCGCGC 58.389 47.619 32.58 23.91 0.00 6.86
149 150 2.611070 GCTACAAAAATACTACGCGCG 58.389 47.619 30.96 30.96 0.00 6.86
150 151 2.611070 CGCTACAAAAATACTACGCGC 58.389 47.619 5.73 0.00 32.83 6.86
151 152 2.595881 GGCGCTACAAAAATACTACGCG 60.596 50.000 7.64 3.53 45.56 6.01
152 153 2.606272 AGGCGCTACAAAAATACTACGC 59.394 45.455 7.64 0.00 44.02 4.42
153 154 3.543460 GCAGGCGCTACAAAAATACTACG 60.543 47.826 7.64 0.00 34.30 3.51
154 155 3.936661 GCAGGCGCTACAAAAATACTAC 58.063 45.455 7.64 0.00 34.30 2.73
168 169 2.664518 GATAGCTCCAGCAGGCGC 60.665 66.667 1.15 1.15 46.09 6.53
169 170 1.593750 GTGATAGCTCCAGCAGGCG 60.594 63.158 0.48 0.00 45.16 5.52
170 171 1.593750 CGTGATAGCTCCAGCAGGC 60.594 63.158 0.48 0.00 45.16 4.85
171 172 1.593750 GCGTGATAGCTCCAGCAGG 60.594 63.158 0.48 0.00 45.16 4.85
172 173 1.948138 CGCGTGATAGCTCCAGCAG 60.948 63.158 0.00 0.00 45.16 4.24
173 174 2.104928 CGCGTGATAGCTCCAGCA 59.895 61.111 0.00 0.00 45.16 4.41
174 175 3.333969 GCGCGTGATAGCTCCAGC 61.334 66.667 8.43 0.00 42.49 4.85
175 176 3.026879 CGCGCGTGATAGCTCCAG 61.027 66.667 24.19 0.00 34.40 3.86
177 178 3.538028 TAGCGCGCGTGATAGCTCC 62.538 63.158 32.35 11.09 40.73 4.70
178 179 1.206745 TTTAGCGCGCGTGATAGCTC 61.207 55.000 32.35 11.90 40.73 4.09
179 180 1.209275 CTTTAGCGCGCGTGATAGCT 61.209 55.000 32.35 20.44 43.07 3.32
180 181 1.199370 CTTTAGCGCGCGTGATAGC 59.801 57.895 32.35 13.55 0.00 2.97
181 182 0.921347 AACTTTAGCGCGCGTGATAG 59.079 50.000 32.35 23.74 0.00 2.08
182 183 1.352114 AAACTTTAGCGCGCGTGATA 58.648 45.000 32.35 20.26 0.00 2.15
183 184 1.060122 GTAAACTTTAGCGCGCGTGAT 59.940 47.619 32.35 21.60 0.00 3.06
184 185 0.435769 GTAAACTTTAGCGCGCGTGA 59.564 50.000 32.35 16.99 0.00 4.35
185 186 0.162082 TGTAAACTTTAGCGCGCGTG 59.838 50.000 32.35 16.86 0.00 5.34
186 187 0.437295 CTGTAAACTTTAGCGCGCGT 59.563 50.000 32.35 20.00 0.00 6.01
187 188 0.852007 GCTGTAAACTTTAGCGCGCG 60.852 55.000 28.44 28.44 0.00 6.86
188 189 2.912542 GCTGTAAACTTTAGCGCGC 58.087 52.632 26.66 26.66 0.00 6.86
192 193 0.096454 CGGCCGCTGTAAACTTTAGC 59.904 55.000 14.67 0.00 0.00 3.09
193 194 0.096454 GCGGCCGCTGTAAACTTTAG 59.904 55.000 41.71 0.75 38.26 1.85
194 195 2.164491 GCGGCCGCTGTAAACTTTA 58.836 52.632 41.71 0.00 38.26 1.85
195 196 2.951458 GCGGCCGCTGTAAACTTT 59.049 55.556 41.71 0.00 38.26 2.66
223 224 2.520904 TTTTTGTGCGGCGCAAAGC 61.521 52.632 38.05 24.64 43.20 3.51
224 225 1.272423 GTTTTTGTGCGGCGCAAAG 59.728 52.632 38.05 0.09 43.20 2.77
225 226 1.416813 CTGTTTTTGTGCGGCGCAAA 61.417 50.000 38.05 31.24 41.47 3.68
226 227 1.875813 CTGTTTTTGTGCGGCGCAA 60.876 52.632 38.05 23.76 41.47 4.85
227 228 2.278466 CTGTTTTTGTGCGGCGCA 60.278 55.556 33.07 33.07 35.60 6.09
228 229 2.025441 TCTGTTTTTGTGCGGCGC 59.975 55.556 27.44 27.44 0.00 6.53
229 230 2.003443 CGTCTGTTTTTGTGCGGCG 61.003 57.895 0.51 0.51 0.00 6.46
230 231 0.040425 ATCGTCTGTTTTTGTGCGGC 60.040 50.000 0.00 0.00 0.00 6.53
231 232 2.043411 CAATCGTCTGTTTTTGTGCGG 58.957 47.619 0.00 0.00 0.00 5.69
232 233 2.043411 CCAATCGTCTGTTTTTGTGCG 58.957 47.619 0.00 0.00 0.00 5.34
233 234 1.786579 GCCAATCGTCTGTTTTTGTGC 59.213 47.619 0.00 0.00 0.00 4.57
234 235 2.043411 CGCCAATCGTCTGTTTTTGTG 58.957 47.619 0.00 0.00 0.00 3.33
235 236 1.599419 GCGCCAATCGTCTGTTTTTGT 60.599 47.619 0.00 0.00 41.07 2.83
236 237 1.052287 GCGCCAATCGTCTGTTTTTG 58.948 50.000 0.00 0.00 41.07 2.44
237 238 0.385473 CGCGCCAATCGTCTGTTTTT 60.385 50.000 0.00 0.00 41.07 1.94
238 239 1.206578 CGCGCCAATCGTCTGTTTT 59.793 52.632 0.00 0.00 41.07 2.43
239 240 2.860293 CGCGCCAATCGTCTGTTT 59.140 55.556 0.00 0.00 41.07 2.83
240 241 3.788766 GCGCGCCAATCGTCTGTT 61.789 61.111 23.24 0.00 41.07 3.16
241 242 4.742201 AGCGCGCCAATCGTCTGT 62.742 61.111 30.33 0.79 41.07 3.41
242 243 4.214383 CAGCGCGCCAATCGTCTG 62.214 66.667 30.33 13.35 41.07 3.51
246 247 4.757354 TTTGCAGCGCGCCAATCG 62.757 61.111 30.33 12.62 41.33 3.34
247 248 3.174573 GTTTGCAGCGCGCCAATC 61.175 61.111 30.33 19.75 41.33 2.67
252 253 2.855280 AAAAACGTTTGCAGCGCGC 61.855 52.632 26.66 26.66 42.89 6.86
253 254 3.294590 AAAAACGTTTGCAGCGCG 58.705 50.000 15.46 0.00 0.00 6.86
282 283 4.688419 CAACAGCTGCCCAACGCG 62.688 66.667 15.27 3.53 42.08 6.01
283 284 4.347453 CCAACAGCTGCCCAACGC 62.347 66.667 15.27 0.00 38.31 4.84
284 285 2.594303 TCCAACAGCTGCCCAACG 60.594 61.111 15.27 0.00 0.00 4.10
285 286 0.610232 ATCTCCAACAGCTGCCCAAC 60.610 55.000 15.27 0.00 0.00 3.77
286 287 0.609957 CATCTCCAACAGCTGCCCAA 60.610 55.000 15.27 0.00 0.00 4.12
287 288 1.001764 CATCTCCAACAGCTGCCCA 60.002 57.895 15.27 0.00 0.00 5.36
288 289 2.413142 GCATCTCCAACAGCTGCCC 61.413 63.158 15.27 0.00 38.17 5.36
289 290 1.375098 GAGCATCTCCAACAGCTGCC 61.375 60.000 15.27 0.00 44.16 4.85
290 291 2.096596 GAGCATCTCCAACAGCTGC 58.903 57.895 15.27 0.00 43.53 5.25
305 306 5.400485 CACACAAATTTGACTTGCTTAGAGC 59.600 40.000 24.64 0.00 42.82 4.09
306 307 6.728200 TCACACAAATTTGACTTGCTTAGAG 58.272 36.000 24.64 0.00 0.00 2.43
307 308 6.691754 TCACACAAATTTGACTTGCTTAGA 57.308 33.333 24.64 6.68 0.00 2.10
308 309 6.919662 ACATCACACAAATTTGACTTGCTTAG 59.080 34.615 24.64 8.06 0.00 2.18
309 310 6.804677 ACATCACACAAATTTGACTTGCTTA 58.195 32.000 24.64 2.88 0.00 3.09
310 311 5.663456 ACATCACACAAATTTGACTTGCTT 58.337 33.333 24.64 0.00 0.00 3.91
311 312 5.266733 ACATCACACAAATTTGACTTGCT 57.733 34.783 24.64 7.00 0.00 3.91
312 313 5.971895 AACATCACACAAATTTGACTTGC 57.028 34.783 24.64 0.00 0.00 4.01
313 314 7.293402 ACAAACATCACACAAATTTGACTTG 57.707 32.000 24.64 14.45 34.93 3.16
314 315 8.031864 TGTACAAACATCACACAAATTTGACTT 58.968 29.630 24.64 5.26 34.93 3.01
315 316 7.542890 TGTACAAACATCACACAAATTTGACT 58.457 30.769 24.64 5.91 34.93 3.41
316 317 7.748031 TGTACAAACATCACACAAATTTGAC 57.252 32.000 24.64 7.86 34.93 3.18
317 318 7.490725 CCTTGTACAAACATCACACAAATTTGA 59.509 33.333 24.64 2.31 34.97 2.69
318 319 7.490725 TCCTTGTACAAACATCACACAAATTTG 59.509 33.333 16.67 16.67 34.97 2.32
319 320 7.551585 TCCTTGTACAAACATCACACAAATTT 58.448 30.769 10.03 0.00 34.97 1.82
320 321 7.106439 TCCTTGTACAAACATCACACAAATT 57.894 32.000 10.03 0.00 34.97 1.82
321 322 6.707440 TCCTTGTACAAACATCACACAAAT 57.293 33.333 10.03 0.00 34.97 2.32
322 323 6.545666 AGATCCTTGTACAAACATCACACAAA 59.454 34.615 20.71 0.00 34.97 2.83
323 324 6.061441 AGATCCTTGTACAAACATCACACAA 58.939 36.000 20.71 0.00 34.97 3.33
324 325 5.620206 AGATCCTTGTACAAACATCACACA 58.380 37.500 20.71 0.00 34.97 3.72
325 326 6.649141 TGTAGATCCTTGTACAAACATCACAC 59.351 38.462 20.71 17.99 34.97 3.82
326 327 6.764379 TGTAGATCCTTGTACAAACATCACA 58.236 36.000 20.71 18.64 34.97 3.58
327 328 6.874134 ACTGTAGATCCTTGTACAAACATCAC 59.126 38.462 20.71 17.18 34.97 3.06
328 329 7.004555 ACTGTAGATCCTTGTACAAACATCA 57.995 36.000 20.71 9.93 34.97 3.07
329 330 7.907214 AACTGTAGATCCTTGTACAAACATC 57.093 36.000 10.03 12.85 34.97 3.06
330 331 8.691661 AAAACTGTAGATCCTTGTACAAACAT 57.308 30.769 10.03 4.27 34.97 2.71
331 332 8.514330 AAAAACTGTAGATCCTTGTACAAACA 57.486 30.769 10.03 8.83 31.83 2.83
332 333 9.874215 GTAAAAACTGTAGATCCTTGTACAAAC 57.126 33.333 10.03 4.41 31.83 2.93
333 334 9.841295 AGTAAAAACTGTAGATCCTTGTACAAA 57.159 29.630 10.03 0.00 31.83 2.83
338 339 9.877178 CTGATAGTAAAAACTGTAGATCCTTGT 57.123 33.333 0.00 0.00 0.00 3.16
339 340 9.319143 CCTGATAGTAAAAACTGTAGATCCTTG 57.681 37.037 0.00 0.00 0.00 3.61
340 341 7.988028 GCCTGATAGTAAAAACTGTAGATCCTT 59.012 37.037 0.00 0.00 0.00 3.36
341 342 7.345914 AGCCTGATAGTAAAAACTGTAGATCCT 59.654 37.037 0.00 0.00 0.00 3.24
346 347 9.601217 AATACAGCCTGATAGTAAAAACTGTAG 57.399 33.333 0.00 0.00 41.23 2.74
351 352 8.276252 TCCAAATACAGCCTGATAGTAAAAAC 57.724 34.615 0.00 0.00 0.00 2.43
356 357 9.474313 AAAAATTCCAAATACAGCCTGATAGTA 57.526 29.630 0.00 0.00 0.00 1.82
411 412 7.757624 GCTGGTAGCTTACTCATGTATATTCTC 59.242 40.741 0.00 0.00 38.45 2.87
434 435 3.429822 CCACCTTCCAATTGCAATAGCTG 60.430 47.826 13.39 7.50 42.74 4.24
437 438 3.763360 TGACCACCTTCCAATTGCAATAG 59.237 43.478 13.39 7.71 0.00 1.73
446 447 2.962421 GACCAAATTGACCACCTTCCAA 59.038 45.455 0.00 0.00 0.00 3.53
457 458 4.950475 TGTTACACCAACAGACCAAATTGA 59.050 37.500 0.00 0.00 42.29 2.57
476 477 5.711506 AGAAGTGTGAAATCATGCCATGTTA 59.288 36.000 4.31 0.00 0.00 2.41
524 526 5.007430 CGTAAGACATAGGCGAAACTCTAGA 59.993 44.000 0.00 0.00 43.02 2.43
548 550 1.304134 AATGACCAAACGGCCTCCC 60.304 57.895 0.00 0.00 0.00 4.30
549 551 1.883021 CAATGACCAAACGGCCTCC 59.117 57.895 0.00 0.00 0.00 4.30
554 556 2.735126 GCATTAGGCAATGACCAAACGG 60.735 50.000 11.99 0.00 43.67 4.44
572 574 1.802880 CGCTTAGTCACGCTTAGGCAT 60.803 52.381 0.00 0.00 38.60 4.40
582 584 2.202756 CCGGAGGCGCTTAGTCAC 60.203 66.667 7.64 0.00 46.14 3.67
658 661 6.140737 GCTTCTGTGTTTCGAATACTGTTTTG 59.859 38.462 0.00 1.10 0.00 2.44
724 732 2.353109 GGGTGCATTCCTTTTCTTGCTC 60.353 50.000 0.00 0.00 36.10 4.26
728 736 2.162681 CTCGGGTGCATTCCTTTTCTT 58.837 47.619 7.34 0.00 0.00 2.52
855 863 7.036829 GTGGTTCTTGTTCTATAAGAGAGGAC 58.963 42.308 0.00 0.00 35.74 3.85
870 878 7.007723 TGGAACTAATTAATGGTGGTTCTTGT 58.992 34.615 13.09 0.00 35.07 3.16
876 884 5.193099 AGCTGGAACTAATTAATGGTGGT 57.807 39.130 0.00 0.00 0.00 4.16
896 904 3.318555 CGACGCAGCAGATCGAGC 61.319 66.667 5.01 0.00 38.10 5.03
971 991 4.840005 GCCGGTGGCTAGCTGGAC 62.840 72.222 15.72 0.00 46.69 4.02
996 1016 0.893270 CCCTGGACAACGCCATTTGA 60.893 55.000 0.00 0.00 37.30 2.69
1320 1383 1.001624 GGCCGTAGTCGCGTAAAAAT 58.998 50.000 5.77 0.00 35.54 1.82
1582 4321 1.008875 TGACTGTGTGCTCGATTCGC 61.009 55.000 0.00 0.00 0.00 4.70
1583 4322 0.710567 GTGACTGTGTGCTCGATTCG 59.289 55.000 0.00 0.00 0.00 3.34
1584 4323 1.783284 TGTGACTGTGTGCTCGATTC 58.217 50.000 0.00 0.00 0.00 2.52
1599 4342 5.179929 CACTGCAAATGTCTCAGTAATGTGA 59.820 40.000 0.00 0.00 38.85 3.58
1600 4343 5.388111 CACTGCAAATGTCTCAGTAATGTG 58.612 41.667 0.00 0.00 38.85 3.21
1685 4454 3.815809 TCTCCCAACACACCTACAAAAG 58.184 45.455 0.00 0.00 0.00 2.27
1729 4610 0.612744 GCTTCACCTCCTTGAGCTCT 59.387 55.000 16.19 0.00 0.00 4.09
1941 4822 9.859152 AGATCGATCAATCATATCTCTACCATA 57.141 33.333 26.47 0.00 28.53 2.74
1955 4853 3.246226 CGGAACCAACAGATCGATCAATC 59.754 47.826 26.47 12.63 0.00 2.67
1975 4873 0.530650 CCCACCTGATCAATCGACGG 60.531 60.000 0.00 0.00 0.00 4.79
1976 4874 0.459899 TCCCACCTGATCAATCGACG 59.540 55.000 0.00 0.00 0.00 5.12
2268 5203 4.511454 GGATGAGTTGATAATACTGCGCAA 59.489 41.667 13.05 0.00 0.00 4.85
2270 5205 3.121944 CGGATGAGTTGATAATACTGCGC 59.878 47.826 0.00 0.00 0.00 6.09
2271 5206 4.299155 ACGGATGAGTTGATAATACTGCG 58.701 43.478 0.00 0.00 0.00 5.18
2273 5208 5.853810 CGAGACGGATGAGTTGATAATACTG 59.146 44.000 0.00 0.00 0.00 2.74
2274 5209 6.003234 CGAGACGGATGAGTTGATAATACT 57.997 41.667 0.00 0.00 0.00 2.12
2291 5226 1.582937 CGACACCGAATCCGAGACG 60.583 63.158 0.00 0.00 38.22 4.18
2292 5227 1.798735 TCGACACCGAATCCGAGAC 59.201 57.895 0.00 0.00 42.51 3.36
2293 5228 4.306767 TCGACACCGAATCCGAGA 57.693 55.556 0.00 0.00 42.51 4.04
2302 5237 2.888594 ACTAACCAATGATCGACACCG 58.111 47.619 0.00 0.00 37.07 4.94
2303 5238 5.622770 AAAACTAACCAATGATCGACACC 57.377 39.130 0.00 0.00 0.00 4.16
2304 5239 6.084277 GGAAAAACTAACCAATGATCGACAC 58.916 40.000 0.00 0.00 0.00 3.67
2305 5240 5.765677 TGGAAAAACTAACCAATGATCGACA 59.234 36.000 0.00 0.00 0.00 4.35
2306 5241 6.072673 ACTGGAAAAACTAACCAATGATCGAC 60.073 38.462 0.00 0.00 33.14 4.20
2307 5242 6.001460 ACTGGAAAAACTAACCAATGATCGA 58.999 36.000 0.00 0.00 33.14 3.59
2308 5243 6.254281 ACTGGAAAAACTAACCAATGATCG 57.746 37.500 0.00 0.00 33.14 3.69
2309 5244 8.793592 ACTTACTGGAAAAACTAACCAATGATC 58.206 33.333 0.00 0.00 33.14 2.92
2310 5245 8.706322 ACTTACTGGAAAAACTAACCAATGAT 57.294 30.769 0.00 0.00 33.14 2.45
2311 5246 8.410141 CAACTTACTGGAAAAACTAACCAATGA 58.590 33.333 0.00 0.00 33.14 2.57
2312 5247 8.410141 TCAACTTACTGGAAAAACTAACCAATG 58.590 33.333 0.00 0.00 33.14 2.82
2313 5248 8.528044 TCAACTTACTGGAAAAACTAACCAAT 57.472 30.769 0.00 0.00 33.14 3.16
2327 5274 4.318332 TGAAGAGCACATCAACTTACTGG 58.682 43.478 0.00 0.00 0.00 4.00
2328 5275 5.410746 ACATGAAGAGCACATCAACTTACTG 59.589 40.000 0.00 0.00 0.00 2.74
2343 5290 2.096220 ACAGAGCAGCACATGAAGAG 57.904 50.000 0.00 0.00 0.00 2.85
2360 5307 1.070786 GGCTCGAACCTGTCCAACA 59.929 57.895 0.00 0.00 0.00 3.33
2361 5308 0.951040 CTGGCTCGAACCTGTCCAAC 60.951 60.000 6.39 0.00 0.00 3.77
2363 5310 0.904865 ATCTGGCTCGAACCTGTCCA 60.905 55.000 6.39 0.00 0.00 4.02
2364 5311 0.179097 GATCTGGCTCGAACCTGTCC 60.179 60.000 6.39 0.00 0.00 4.02
2366 5313 1.198713 ATGATCTGGCTCGAACCTGT 58.801 50.000 6.39 0.00 0.00 4.00
2367 5314 1.938577 CAATGATCTGGCTCGAACCTG 59.061 52.381 6.39 5.88 0.00 4.00
2435 5386 8.856247 ACAAAAACGAACAACTGTAGAAAAATC 58.144 29.630 0.00 0.00 0.00 2.17
2449 5409 3.679824 AAACCCCAACAAAAACGAACA 57.320 38.095 0.00 0.00 0.00 3.18
2474 5436 2.092646 ACAGTAGTGCAACACTTTGGGA 60.093 45.455 5.44 0.00 42.59 4.37
2475 5437 2.297701 ACAGTAGTGCAACACTTTGGG 58.702 47.619 5.44 0.00 42.59 4.12
2476 5438 3.694734 CAACAGTAGTGCAACACTTTGG 58.305 45.455 5.44 0.00 42.59 3.28
2477 5439 3.108144 GCAACAGTAGTGCAACACTTTG 58.892 45.455 5.44 5.66 42.59 2.77
2478 5440 2.752354 TGCAACAGTAGTGCAACACTTT 59.248 40.909 5.44 0.00 42.59 2.66
2489 5452 5.868043 TCATCAGTGATTTGCAACAGTAG 57.132 39.130 1.86 0.00 0.00 2.57
2490 5453 6.822667 ATTCATCAGTGATTTGCAACAGTA 57.177 33.333 1.86 0.00 33.56 2.74
2491 5454 5.717078 ATTCATCAGTGATTTGCAACAGT 57.283 34.783 1.86 0.00 33.56 3.55
2492 5455 7.644157 CAGATATTCATCAGTGATTTGCAACAG 59.356 37.037 1.86 0.00 33.56 3.16
2493 5456 7.477494 CAGATATTCATCAGTGATTTGCAACA 58.523 34.615 1.86 0.00 33.56 3.33
2494 5457 6.417044 GCAGATATTCATCAGTGATTTGCAAC 59.583 38.462 1.86 0.00 33.56 4.17
2495 5458 6.095720 TGCAGATATTCATCAGTGATTTGCAA 59.904 34.615 1.86 0.00 32.55 4.08
2496 5459 5.591067 TGCAGATATTCATCAGTGATTTGCA 59.409 36.000 1.86 3.10 33.56 4.08
2497 5460 5.913514 GTGCAGATATTCATCAGTGATTTGC 59.086 40.000 1.86 0.28 33.56 3.68
2498 5461 7.023197 TGTGCAGATATTCATCAGTGATTTG 57.977 36.000 1.86 0.00 33.56 2.32
2499 5462 7.284716 ACATGTGCAGATATTCATCAGTGATTT 59.715 33.333 1.86 0.00 33.56 2.17
2500 5463 6.771267 ACATGTGCAGATATTCATCAGTGATT 59.229 34.615 1.86 0.00 33.56 2.57
2501 5464 6.204882 CACATGTGCAGATATTCATCAGTGAT 59.795 38.462 13.94 0.00 33.56 3.06
2502 5465 5.526111 CACATGTGCAGATATTCATCAGTGA 59.474 40.000 13.94 0.00 33.21 3.41
2503 5466 5.296035 ACACATGTGCAGATATTCATCAGTG 59.704 40.000 25.68 0.62 33.21 3.66
2504 5467 5.434408 ACACATGTGCAGATATTCATCAGT 58.566 37.500 25.68 0.00 33.21 3.41
2505 5468 7.486802 TTACACATGTGCAGATATTCATCAG 57.513 36.000 25.68 0.00 33.21 2.90
2506 5469 7.499895 ACATTACACATGTGCAGATATTCATCA 59.500 33.333 25.68 0.00 33.21 3.07
2507 5470 7.801783 CACATTACACATGTGCAGATATTCATC 59.198 37.037 25.68 0.00 42.19 2.92
2508 5471 7.645402 CACATTACACATGTGCAGATATTCAT 58.355 34.615 25.68 4.67 42.19 2.57
2509 5472 7.018635 CACATTACACATGTGCAGATATTCA 57.981 36.000 25.68 0.00 42.19 2.57
2520 5483 4.645762 TGCAACAACACATTACACATGT 57.354 36.364 0.00 0.00 0.00 3.21
2521 5484 5.963140 TTTGCAACAACACATTACACATG 57.037 34.783 0.00 0.00 0.00 3.21
2522 5485 6.514947 AGATTTGCAACAACACATTACACAT 58.485 32.000 0.00 0.00 0.00 3.21
2523 5486 5.900425 AGATTTGCAACAACACATTACACA 58.100 33.333 0.00 0.00 0.00 3.72
2524 5487 6.142798 CAGAGATTTGCAACAACACATTACAC 59.857 38.462 0.00 0.00 0.00 2.90
2525 5488 6.039159 TCAGAGATTTGCAACAACACATTACA 59.961 34.615 0.00 0.00 0.00 2.41
2526 5489 6.360681 GTCAGAGATTTGCAACAACACATTAC 59.639 38.462 0.00 0.00 0.00 1.89
2527 5490 6.437928 GTCAGAGATTTGCAACAACACATTA 58.562 36.000 0.00 0.00 0.00 1.90
2528 5491 5.284079 GTCAGAGATTTGCAACAACACATT 58.716 37.500 0.00 0.00 0.00 2.71
2529 5492 4.555313 CGTCAGAGATTTGCAACAACACAT 60.555 41.667 0.00 0.00 0.00 3.21
2530 5493 3.242706 CGTCAGAGATTTGCAACAACACA 60.243 43.478 0.00 0.00 0.00 3.72
2531 5494 3.291585 CGTCAGAGATTTGCAACAACAC 58.708 45.455 0.00 0.00 0.00 3.32
2532 5495 2.290367 CCGTCAGAGATTTGCAACAACA 59.710 45.455 0.00 0.00 0.00 3.33
2533 5496 2.350772 CCCGTCAGAGATTTGCAACAAC 60.351 50.000 0.00 0.00 0.00 3.32
2534 5497 1.879380 CCCGTCAGAGATTTGCAACAA 59.121 47.619 0.00 0.00 0.00 2.83
2535 5498 1.522668 CCCGTCAGAGATTTGCAACA 58.477 50.000 0.00 0.00 0.00 3.33
2536 5499 0.169009 GCCCGTCAGAGATTTGCAAC 59.831 55.000 0.00 0.00 0.00 4.17
2537 5500 0.250684 TGCCCGTCAGAGATTTGCAA 60.251 50.000 0.00 0.00 0.00 4.08
2538 5501 0.035152 ATGCCCGTCAGAGATTTGCA 60.035 50.000 0.00 0.00 0.00 4.08
2539 5502 0.659957 GATGCCCGTCAGAGATTTGC 59.340 55.000 0.00 0.00 0.00 3.68
2540 5503 1.134280 AGGATGCCCGTCAGAGATTTG 60.134 52.381 0.00 0.00 37.58 2.32
2541 5504 1.207791 AGGATGCCCGTCAGAGATTT 58.792 50.000 0.00 0.00 37.58 2.17
2542 5505 1.207791 AAGGATGCCCGTCAGAGATT 58.792 50.000 0.00 0.00 37.58 2.40
2543 5506 1.134280 CAAAGGATGCCCGTCAGAGAT 60.134 52.381 0.00 0.00 37.58 2.75
2544 5507 0.250234 CAAAGGATGCCCGTCAGAGA 59.750 55.000 0.00 0.00 37.58 3.10
2545 5508 2.772739 CAAAGGATGCCCGTCAGAG 58.227 57.895 0.00 0.00 37.58 3.35
2580 5543 2.029124 CGTTGCTTGCAGAAACAAAACC 59.971 45.455 7.51 0.00 33.19 3.27
2617 5583 1.127582 CGCTTGCAGAGACAAAGCTAC 59.872 52.381 3.07 0.00 0.00 3.58
2618 5584 1.000843 TCGCTTGCAGAGACAAAGCTA 59.999 47.619 3.07 0.00 0.00 3.32
2619 5585 0.250038 TCGCTTGCAGAGACAAAGCT 60.250 50.000 3.07 0.00 0.00 3.74
2620 5586 0.588252 TTCGCTTGCAGAGACAAAGC 59.412 50.000 0.00 0.00 0.00 3.51
2627 5593 1.069636 GGTGTTTCTTCGCTTGCAGAG 60.070 52.381 0.00 0.00 0.00 3.35
2637 5603 2.341846 TGGACCACTGGTGTTTCTTC 57.658 50.000 5.10 0.00 35.25 2.87
2709 5675 3.296851 CCGATGGCATGGGCAAAA 58.703 55.556 15.87 0.00 42.43 2.44
2982 5954 0.245539 CCACCTCGAACACCGTGTAT 59.754 55.000 4.17 0.00 39.75 2.29
3072 6044 0.673333 GGATGACCACACGCATGACA 60.673 55.000 0.00 0.00 35.97 3.58
3093 6065 4.069232 CCGCGGCTGAAGTCCTCA 62.069 66.667 14.67 0.00 0.00 3.86
3346 6320 6.607735 AAAAACAAGAAATGAGCCAACATG 57.392 33.333 0.00 0.00 0.00 3.21
3393 6371 8.587950 CACAAAACGAATGCTAAACTTAAAACA 58.412 29.630 0.00 0.00 0.00 2.83
3464 6512 1.067495 ACCGCAGAGCACTTAGAAGTC 60.067 52.381 0.00 0.00 37.08 3.01
3465 6513 0.969894 ACCGCAGAGCACTTAGAAGT 59.030 50.000 0.00 0.00 40.60 3.01
3483 6531 1.602605 CTCAAACCCCAACCCGGAC 60.603 63.158 0.73 0.00 36.56 4.79
3492 6541 1.074889 TGTTCTTAGCCCTCAAACCCC 59.925 52.381 0.00 0.00 0.00 4.95
3505 6554 1.202592 TCAGCAGCGGTGTTGTTCTTA 60.203 47.619 26.93 8.34 36.35 2.10
3520 6569 3.326006 AGGTGACAGAAGAATCTTCAGCA 59.674 43.478 23.20 14.87 40.13 4.41
3583 6632 7.721286 ATTTTTAAATTTGTTGCATCGGTGA 57.279 28.000 0.00 0.00 0.00 4.02
3643 6693 2.104281 ACCACAAGTCAGGGAAGTACAC 59.896 50.000 0.00 0.00 0.00 2.90
3729 6798 7.654116 GTGCTTATATTTTACTCCCTCTGTCTC 59.346 40.741 0.00 0.00 0.00 3.36
3734 6803 8.090788 TCTTGTGCTTATATTTTACTCCCTCT 57.909 34.615 0.00 0.00 0.00 3.69
3817 6887 1.346378 AATGATGCAACAAAGCGCGC 61.346 50.000 26.66 26.66 37.31 6.86
3818 6888 1.062258 AAATGATGCAACAAAGCGCG 58.938 45.000 0.00 0.00 37.31 6.86
3819 6889 2.733026 AGAAAATGATGCAACAAAGCGC 59.267 40.909 0.00 0.00 37.31 5.92
3820 6890 4.143263 GGAAGAAAATGATGCAACAAAGCG 60.143 41.667 0.00 0.00 37.31 4.68
3834 6904 6.835174 TCATGCATAGCTCTAGGAAGAAAAT 58.165 36.000 0.00 0.00 0.00 1.82
3874 6944 6.578545 CACTAAGTGATCACCAAACAATTTCG 59.421 38.462 22.21 6.26 35.23 3.46
3888 6958 3.870633 AGTTCGACCCACTAAGTGATC 57.129 47.619 0.00 0.00 35.23 2.92
3958 7028 9.802039 AGTTTCACTATTGGGTCAACTATTTAA 57.198 29.630 0.00 0.00 0.00 1.52
4042 7113 5.792741 AGAAGAGAGAAAGTGAGTGAATGG 58.207 41.667 0.00 0.00 0.00 3.16
4173 7247 5.871524 GTCATGCTAAAAGTCAGACATCAGA 59.128 40.000 2.66 0.00 0.00 3.27
4175 7249 5.550290 TGTCATGCTAAAAGTCAGACATCA 58.450 37.500 2.66 0.00 30.43 3.07
4176 7250 6.486253 TTGTCATGCTAAAAGTCAGACATC 57.514 37.500 2.66 0.00 34.87 3.06
4178 7252 6.486320 TGATTTGTCATGCTAAAAGTCAGACA 59.514 34.615 2.66 0.00 33.23 3.41
4179 7253 6.902341 TGATTTGTCATGCTAAAAGTCAGAC 58.098 36.000 0.00 0.00 0.00 3.51
4180 7254 7.509141 TTGATTTGTCATGCTAAAAGTCAGA 57.491 32.000 0.00 0.00 0.00 3.27
4181 7255 7.149080 CGTTTGATTTGTCATGCTAAAAGTCAG 60.149 37.037 0.00 0.00 0.00 3.51
4182 7256 6.636447 CGTTTGATTTGTCATGCTAAAAGTCA 59.364 34.615 0.00 0.00 0.00 3.41
4183 7257 6.636850 ACGTTTGATTTGTCATGCTAAAAGTC 59.363 34.615 0.00 0.00 0.00 3.01
4184 7258 6.503524 ACGTTTGATTTGTCATGCTAAAAGT 58.496 32.000 0.00 0.00 0.00 2.66
4185 7259 6.991485 ACGTTTGATTTGTCATGCTAAAAG 57.009 33.333 0.00 0.00 0.00 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.