Multiple sequence alignment - TraesCS2B01G333500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G333500 chr2B 100.000 5327 0 0 1798 7124 476719077 476724403 0.000000e+00 9838.0
1 TraesCS2B01G333500 chr2B 100.000 1518 0 0 1 1518 476717280 476718797 0.000000e+00 2804.0
2 TraesCS2B01G333500 chr2B 95.352 710 26 5 1 705 590921396 590922103 0.000000e+00 1122.0
3 TraesCS2B01G333500 chr2B 93.724 717 27 4 1 711 451528674 451527970 0.000000e+00 1059.0
4 TraesCS2B01G333500 chr2B 86.667 765 38 26 1 710 470048203 470048958 0.000000e+00 789.0
5 TraesCS2B01G333500 chr2B 90.847 437 18 7 1 415 571946989 571946553 3.730000e-157 566.0
6 TraesCS2B01G333500 chr2D 93.514 2775 129 31 1798 4555 402938670 402941410 0.000000e+00 4080.0
7 TraesCS2B01G333500 chr2D 89.007 1410 82 33 5149 6544 402942949 402944299 0.000000e+00 1677.0
8 TraesCS2B01G333500 chr2D 94.683 489 25 1 4378 4865 402941194 402941682 0.000000e+00 758.0
9 TraesCS2B01G333500 chr2D 86.753 619 27 8 714 1313 402937781 402938363 7.790000e-179 638.0
10 TraesCS2B01G333500 chr2D 82.875 473 28 24 6553 6998 402944344 402944790 6.750000e-100 375.0
11 TraesCS2B01G333500 chr2D 88.365 318 10 2 1228 1518 402938368 402938685 2.440000e-94 357.0
12 TraesCS2B01G333500 chr2D 97.753 178 3 1 4895 5072 402942772 402942948 8.980000e-79 305.0
13 TraesCS2B01G333500 chr2D 90.278 72 7 0 1798 1869 402938571 402938642 2.120000e-15 95.3
14 TraesCS2B01G333500 chr2A 95.073 2253 93 9 2383 4623 540049384 540051630 0.000000e+00 3530.0
15 TraesCS2B01G333500 chr2A 89.395 1669 95 34 4895 6540 540052022 540053631 0.000000e+00 2026.0
16 TraesCS2B01G333500 chr2A 94.356 815 18 4 714 1518 540048022 540048818 0.000000e+00 1225.0
17 TraesCS2B01G333500 chr2A 96.057 558 15 2 1798 2355 540048836 540049386 0.000000e+00 902.0
18 TraesCS2B01G333500 chr2A 88.211 738 46 20 1 706 469445639 469444911 0.000000e+00 843.0
19 TraesCS2B01G333500 chr2A 86.074 754 48 25 1 702 403614780 403615528 0.000000e+00 758.0
20 TraesCS2B01G333500 chr2A 85.013 754 45 26 1 702 401614815 401615552 0.000000e+00 704.0
21 TraesCS2B01G333500 chr2A 90.948 464 34 7 4442 4897 540051527 540051990 1.020000e-172 617.0
22 TraesCS2B01G333500 chr2A 93.023 344 19 3 1 340 98570743 98570401 1.380000e-136 497.0
23 TraesCS2B01G333500 chr2A 84.722 288 35 8 4342 4623 540051388 540051672 5.440000e-71 279.0
24 TraesCS2B01G333500 chr2A 87.081 209 11 8 6804 6998 540055237 540055443 9.300000e-54 222.0
25 TraesCS2B01G333500 chr2A 91.667 48 3 1 7003 7050 150494147 150494193 1.660000e-06 65.8
26 TraesCS2B01G333500 chr2A 87.755 49 6 0 6999 7047 346196243 346196291 2.780000e-04 58.4
27 TraesCS2B01G333500 chr4D 83.838 2574 293 59 2159 4686 505389504 505392000 0.000000e+00 2335.0
28 TraesCS2B01G333500 chr4D 95.943 419 17 0 4019 4437 215202648 215203066 0.000000e+00 680.0
29 TraesCS2B01G333500 chr4D 95.714 420 18 0 4018 4437 228115265 228115684 0.000000e+00 676.0
30 TraesCS2B01G333500 chr4D 82.346 793 67 27 759 1518 505388224 505388976 7.850000e-174 621.0
31 TraesCS2B01G333500 chr4D 76.864 1301 159 69 4340 5553 505391696 505392941 7.900000e-169 604.0
32 TraesCS2B01G333500 chr4D 96.875 320 9 1 4895 5213 215203129 215203448 1.050000e-147 534.0
33 TraesCS2B01G333500 chr4D 96.250 320 11 1 4895 5213 228115747 228116066 2.280000e-144 523.0
34 TraesCS2B01G333500 chr4D 96.186 236 9 0 5393 5628 215203449 215203684 3.120000e-103 387.0
35 TraesCS2B01G333500 chr4D 83.051 413 50 14 1798 2204 505389027 505389425 2.440000e-94 357.0
36 TraesCS2B01G333500 chr4D 93.333 75 5 0 1798 1872 505388928 505389002 2.100000e-20 111.0
37 TraesCS2B01G333500 chr5A 83.538 2600 297 60 2142 4686 689868294 689870817 0.000000e+00 2309.0
38 TraesCS2B01G333500 chr5A 78.617 1099 156 52 4339 5388 689870512 689871580 0.000000e+00 654.0
39 TraesCS2B01G333500 chr5A 77.904 792 90 34 759 1518 689867027 689867765 1.430000e-111 414.0
40 TraesCS2B01G333500 chr5A 91.732 254 21 0 1798 2051 689867921 689868174 3.160000e-93 353.0
41 TraesCS2B01G333500 chr4B 89.196 833 79 8 2441 3272 652273712 652274534 0.000000e+00 1029.0
42 TraesCS2B01G333500 chr4B 85.517 580 62 8 3273 3838 652274611 652275182 2.860000e-163 586.0
43 TraesCS2B01G333500 chr4B 90.868 438 17 11 1 415 134585903 134586340 3.730000e-157 566.0
44 TraesCS2B01G333500 chr4B 81.476 664 75 29 1798 2420 652272909 652273565 1.070000e-137 501.0
45 TraesCS2B01G333500 chr4B 97.260 292 8 0 5337 5628 473123621 473123912 4.960000e-136 496.0
46 TraesCS2B01G333500 chr4B 78.106 813 89 30 759 1518 652272115 652272891 3.950000e-117 433.0
47 TraesCS2B01G333500 chr4B 90.000 210 19 2 497 705 134586474 134586682 3.280000e-68 270.0
48 TraesCS2B01G333500 chr4B 92.000 75 6 0 1798 1872 652272843 652272917 9.770000e-19 106.0
49 TraesCS2B01G333500 chr1B 85.395 760 45 22 1 709 663658745 663659489 0.000000e+00 728.0
50 TraesCS2B01G333500 chr1B 90.389 437 20 7 1 415 322393400 322392964 8.070000e-154 555.0
51 TraesCS2B01G333500 chr1B 96.656 299 8 2 5337 5635 616773825 616773529 4.960000e-136 496.0
52 TraesCS2B01G333500 chr1B 89.815 216 19 3 497 711 322392830 322392617 2.530000e-69 274.0
53 TraesCS2B01G333500 chr3D 96.190 420 16 0 4018 4437 275605573 275605154 0.000000e+00 688.0
54 TraesCS2B01G333500 chr3D 96.875 320 9 1 4895 5213 275592441 275592122 1.050000e-147 534.0
55 TraesCS2B01G333500 chr3D 78.626 262 33 15 2979 3219 561454030 561453771 1.240000e-32 152.0
56 TraesCS2B01G333500 chr7D 96.190 420 14 2 4018 4437 7875526 7875109 0.000000e+00 686.0
57 TraesCS2B01G333500 chr7D 95.476 420 19 0 4018 4437 69468152 69467733 0.000000e+00 671.0
58 TraesCS2B01G333500 chr7D 97.188 320 8 1 4895 5213 7875046 7874727 2.260000e-149 540.0
59 TraesCS2B01G333500 chr7D 97.179 319 9 0 4895 5213 69467670 69467352 2.260000e-149 540.0
60 TraesCS2B01G333500 chr7D 96.296 243 7 2 5393 5635 69467351 69467111 1.440000e-106 398.0
61 TraesCS2B01G333500 chr7D 95.885 243 8 2 5393 5635 7874726 7874486 6.700000e-105 392.0
62 TraesCS2B01G333500 chr6D 95.952 420 17 0 4018 4437 429338599 429339018 0.000000e+00 682.0
63 TraesCS2B01G333500 chr6D 97.500 320 7 1 4895 5213 429339081 429339400 4.860000e-151 545.0
64 TraesCS2B01G333500 chr6D 95.200 250 11 1 5393 5641 429339401 429339650 1.860000e-105 394.0
65 TraesCS2B01G333500 chr6D 91.304 46 4 0 7002 7047 106034278 106034323 5.970000e-06 63.9
66 TraesCS2B01G333500 chr3B 91.076 437 16 11 1 415 379677514 379677949 2.880000e-158 569.0
67 TraesCS2B01G333500 chr3B 96.656 299 8 2 5337 5635 125437395 125437099 4.960000e-136 496.0
68 TraesCS2B01G333500 chr3B 82.471 348 31 20 363 702 379677937 379678262 1.960000e-70 278.0
69 TraesCS2B01G333500 chr3B 79.118 340 51 16 5030 5363 25818038 25818363 4.330000e-52 217.0
70 TraesCS2B01G333500 chr3B 79.118 340 51 16 5030 5363 26138228 26138553 4.330000e-52 217.0
71 TraesCS2B01G333500 chr3B 79.056 339 53 14 5030 5363 26216763 26217088 4.330000e-52 217.0
72 TraesCS2B01G333500 chr3B 79.118 340 51 16 5030 5363 26324153 26324478 4.330000e-52 217.0
73 TraesCS2B01G333500 chr3B 78.824 340 52 16 5030 5363 25957793 25958118 2.010000e-50 211.0
74 TraesCS2B01G333500 chr3B 78.824 340 52 16 5030 5363 26282526 26282851 2.010000e-50 211.0
75 TraesCS2B01G333500 chr3B 85.882 85 11 1 3083 3166 748777082 748776998 9.840000e-14 89.8
76 TraesCS2B01G333500 chr3B 91.667 48 4 0 7000 7047 572674509 572674556 4.610000e-07 67.6
77 TraesCS2B01G333500 chr6B 90.847 437 18 10 1 415 568190143 568189707 3.730000e-157 566.0
78 TraesCS2B01G333500 chr6B 90.847 437 18 3 1 415 720531738 720531302 3.730000e-157 566.0
79 TraesCS2B01G333500 chr6B 89.150 341 29 5 364 701 720531313 720530978 1.110000e-112 418.0
80 TraesCS2B01G333500 chr6B 91.213 239 18 3 2762 2999 630609542 630609778 8.910000e-84 322.0
81 TraesCS2B01G333500 chr6B 90.377 239 19 4 2762 2999 630544759 630544994 1.930000e-80 311.0
82 TraesCS2B01G333500 chr6B 85.484 124 15 3 2611 2734 630544648 630544768 7.500000e-25 126.0
83 TraesCS2B01G333500 chr6B 91.304 46 4 0 7002 7047 2318851 2318896 5.970000e-06 63.9
84 TraesCS2B01G333500 chr3A 90.847 437 18 10 1 415 11577907 11577471 3.730000e-157 566.0
85 TraesCS2B01G333500 chr3A 90.847 437 18 10 1 415 457925510 457925074 3.730000e-157 566.0
86 TraesCS2B01G333500 chr1A 90.847 437 18 7 1 415 113882959 113882523 3.730000e-157 566.0
87 TraesCS2B01G333500 chr4A 90.160 437 21 7 1 415 705572098 705572534 3.760000e-152 549.0
88 TraesCS2B01G333500 chr7B 96.918 292 9 0 5337 5628 722675980 722676271 2.310000e-134 490.0
89 TraesCS2B01G333500 chr7B 93.478 46 3 0 7002 7047 638738885 638738930 1.280000e-07 69.4
90 TraesCS2B01G333500 chr5B 95.987 299 10 2 5337 5635 686439800 686439504 1.070000e-132 484.0
91 TraesCS2B01G333500 chrUn 79.118 340 51 16 5030 5363 450402762 450403087 4.330000e-52 217.0
92 TraesCS2B01G333500 chr6A 91.837 49 4 0 7002 7050 74091776 74091728 1.280000e-07 69.4
93 TraesCS2B01G333500 chr5D 95.349 43 2 0 7008 7050 520907072 520907030 1.280000e-07 69.4
94 TraesCS2B01G333500 chr1D 91.304 46 4 0 7002 7047 2758381 2758426 5.970000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G333500 chr2B 476717280 476724403 7123 False 6321.000000 9838 100.000000 1 7124 2 chr2B.!!$F3 7123
1 TraesCS2B01G333500 chr2B 590921396 590922103 707 False 1122.000000 1122 95.352000 1 705 1 chr2B.!!$F2 704
2 TraesCS2B01G333500 chr2B 451527970 451528674 704 True 1059.000000 1059 93.724000 1 711 1 chr2B.!!$R1 710
3 TraesCS2B01G333500 chr2B 470048203 470048958 755 False 789.000000 789 86.667000 1 710 1 chr2B.!!$F1 709
4 TraesCS2B01G333500 chr2D 402937781 402944790 7009 False 1035.662500 4080 90.403500 714 6998 8 chr2D.!!$F1 6284
5 TraesCS2B01G333500 chr2A 540048022 540055443 7421 False 1257.285714 3530 91.090286 714 6998 7 chr2A.!!$F5 6284
6 TraesCS2B01G333500 chr2A 469444911 469445639 728 True 843.000000 843 88.211000 1 706 1 chr2A.!!$R2 705
7 TraesCS2B01G333500 chr2A 403614780 403615528 748 False 758.000000 758 86.074000 1 702 1 chr2A.!!$F4 701
8 TraesCS2B01G333500 chr2A 401614815 401615552 737 False 704.000000 704 85.013000 1 702 1 chr2A.!!$F3 701
9 TraesCS2B01G333500 chr4D 505388224 505392941 4717 False 805.600000 2335 83.886400 759 5553 5 chr4D.!!$F3 4794
10 TraesCS2B01G333500 chr4D 228115265 228116066 801 False 599.500000 676 95.982000 4018 5213 2 chr4D.!!$F2 1195
11 TraesCS2B01G333500 chr4D 215202648 215203684 1036 False 533.666667 680 96.334667 4019 5628 3 chr4D.!!$F1 1609
12 TraesCS2B01G333500 chr5A 689867027 689871580 4553 False 932.500000 2309 82.947750 759 5388 4 chr5A.!!$F1 4629
13 TraesCS2B01G333500 chr4B 652272115 652275182 3067 False 531.000000 1029 85.259000 759 3838 5 chr4B.!!$F3 3079
14 TraesCS2B01G333500 chr4B 134585903 134586682 779 False 418.000000 566 90.434000 1 705 2 chr4B.!!$F2 704
15 TraesCS2B01G333500 chr1B 663658745 663659489 744 False 728.000000 728 85.395000 1 709 1 chr1B.!!$F1 708
16 TraesCS2B01G333500 chr1B 322392617 322393400 783 True 414.500000 555 90.102000 1 711 2 chr1B.!!$R2 710
17 TraesCS2B01G333500 chr7D 7874486 7875526 1040 True 539.333333 686 96.421000 4018 5635 3 chr7D.!!$R1 1617
18 TraesCS2B01G333500 chr7D 69467111 69468152 1041 True 536.333333 671 96.317000 4018 5635 3 chr7D.!!$R2 1617
19 TraesCS2B01G333500 chr6D 429338599 429339650 1051 False 540.333333 682 96.217333 4018 5641 3 chr6D.!!$F2 1623
20 TraesCS2B01G333500 chr3B 379677514 379678262 748 False 423.500000 569 86.773500 1 702 2 chr3B.!!$F8 701
21 TraesCS2B01G333500 chr6B 720530978 720531738 760 True 492.000000 566 89.998500 1 701 2 chr6B.!!$R2 700

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
674 798 0.397564 TCCGTTTCCACCCCTACAAC 59.602 55.000 0.00 0.0 0.00 3.32 F
1317 1686 0.320771 GAAGTCCTTCTCGCAAGGCA 60.321 55.000 7.87 0.0 37.34 4.75 F
1512 2031 0.528470 GTTCTCTCAGGTCGGAGGTG 59.472 60.000 0.00 0.0 35.58 4.00 F
1513 2032 0.612174 TTCTCTCAGGTCGGAGGTGG 60.612 60.000 0.00 0.0 35.58 4.61 F
2709 3617 1.196354 CTTGCCAGTTCAGCTTCTTCG 59.804 52.381 0.00 0.0 0.00 3.79 F
4364 5395 1.000843 GCAAAACCCCTGATGAACCAC 59.999 52.381 0.00 0.0 0.00 4.16 F
4566 5744 0.606604 CCAAGCAGCTGGAGCAAATT 59.393 50.000 17.12 0.0 45.16 1.82 F
5218 7553 0.323302 TTTATCTGTCGGTGCCAGCA 59.677 50.000 0.00 0.0 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1821 2379 1.229209 ACCTCCGCCCTGAGAGAAA 60.229 57.895 0.00 0.0 34.11 2.52 R
2709 3617 0.498927 GAGATTCGTCGCGCATACAC 59.501 55.000 8.75 0.0 0.00 2.90 R
2808 3716 0.773644 ATTCTGTCAGGTGCAAGGGT 59.226 50.000 0.00 0.0 0.00 4.34 R
3091 4007 3.253188 CCTGTCGAACAACATCAATTGGT 59.747 43.478 5.42 0.0 33.63 3.67 R
4381 5448 0.040204 CTGGTTCATCAGGGGGCTTT 59.960 55.000 0.00 0.0 0.00 3.51 R
5218 7553 0.402504 TAAACCACGGGCACAGGAAT 59.597 50.000 0.71 0.0 0.00 3.01 R
5774 8190 0.861837 GTCGATTAGAATGCCCAGCG 59.138 55.000 0.00 0.0 0.00 5.18 R
7042 10860 0.105964 TGACACGACAAAGGTCTGGG 59.894 55.000 0.00 0.0 42.05 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
157 178 1.449601 GAAGCAAATCGGCGAGGGA 60.450 57.895 17.22 0.00 39.27 4.20
254 275 1.374125 CTTCGTCATGTCGGCACCA 60.374 57.895 12.31 0.00 0.00 4.17
361 385 1.355381 TGATGTGCACCCCTTCATCTT 59.645 47.619 15.69 0.00 37.93 2.40
374 398 2.759973 ATCTTGAGAGGGCGGCGA 60.760 61.111 12.98 0.00 0.00 5.54
419 528 4.070552 GAGAGGGCGACGGCAAGT 62.071 66.667 23.66 6.81 42.47 3.16
428 542 2.526873 ACGGCAAGTGGGAGGAGT 60.527 61.111 0.00 0.00 0.00 3.85
435 549 1.555533 CAAGTGGGAGGAGTTAGGGAC 59.444 57.143 0.00 0.00 0.00 4.46
674 798 0.397564 TCCGTTTCCACCCCTACAAC 59.602 55.000 0.00 0.00 0.00 3.32
687 812 6.094881 CCACCCCTACAACTTTATGTACAATG 59.905 42.308 0.00 0.00 34.75 2.82
688 813 6.657541 CACCCCTACAACTTTATGTACAATGT 59.342 38.462 0.00 1.70 34.75 2.71
1313 1682 0.667487 CGCAGAAGTCCTTCTCGCAA 60.667 55.000 20.79 0.00 46.13 4.85
1317 1686 0.320771 GAAGTCCTTCTCGCAAGGCA 60.321 55.000 7.87 0.00 37.34 4.75
1504 2023 2.651361 CACGGCGTTCTCTCAGGT 59.349 61.111 11.19 0.00 0.00 4.00
1505 2024 1.444553 CACGGCGTTCTCTCAGGTC 60.445 63.158 11.19 0.00 0.00 3.85
1506 2025 2.202492 CGGCGTTCTCTCAGGTCG 60.202 66.667 0.00 0.00 0.00 4.79
1507 2026 2.182030 GGCGTTCTCTCAGGTCGG 59.818 66.667 0.00 0.00 0.00 4.79
1508 2027 2.341101 GGCGTTCTCTCAGGTCGGA 61.341 63.158 0.00 0.00 0.00 4.55
1509 2028 1.137825 GCGTTCTCTCAGGTCGGAG 59.862 63.158 0.00 0.00 36.21 4.63
1510 2029 1.803943 CGTTCTCTCAGGTCGGAGG 59.196 63.158 0.00 0.00 35.58 4.30
1511 2030 0.961358 CGTTCTCTCAGGTCGGAGGT 60.961 60.000 0.00 0.00 35.58 3.85
1512 2031 0.528470 GTTCTCTCAGGTCGGAGGTG 59.472 60.000 0.00 0.00 35.58 4.00
1513 2032 0.612174 TTCTCTCAGGTCGGAGGTGG 60.612 60.000 0.00 0.00 35.58 4.61
1514 2033 2.680352 TCTCAGGTCGGAGGTGGC 60.680 66.667 0.00 0.00 35.58 5.01
1515 2034 4.135153 CTCAGGTCGGAGGTGGCG 62.135 72.222 0.00 0.00 0.00 5.69
2131 2745 1.202627 TGGGATTTTGTTGGTTGCAGC 60.203 47.619 0.00 0.00 0.00 5.25
2175 2790 7.827701 TGATTGGCGTTGGTTATTGTAATTAA 58.172 30.769 0.00 0.00 0.00 1.40
2377 3148 7.653311 GCTAGACTGTTTGAAATGGTGATTTTT 59.347 33.333 0.00 0.00 31.58 1.94
2381 3152 7.102346 ACTGTTTGAAATGGTGATTTTTGTCA 58.898 30.769 0.00 0.00 31.58 3.58
2382 3153 7.064490 ACTGTTTGAAATGGTGATTTTTGTCAC 59.936 33.333 0.00 0.00 46.04 3.67
2435 3337 2.738846 CACAGTCAGTATGCAGTTCCAC 59.261 50.000 0.00 0.00 34.76 4.02
2438 3340 2.371841 AGTCAGTATGCAGTTCCACCAA 59.628 45.455 0.00 0.00 34.76 3.67
2472 3374 3.071874 TCGTCAATGCAGAGGGAATTT 57.928 42.857 0.00 0.00 0.00 1.82
2509 3413 9.614792 AGTCCTTATGCTACTAAATGTTTTAGG 57.385 33.333 10.75 0.00 0.00 2.69
2523 3427 5.499004 TGTTTTAGGGAGAACAGCTATGT 57.501 39.130 0.00 0.00 43.15 2.29
2565 3472 7.038587 TGCTAGTTACAGAAGTTGGATTCCTTA 60.039 37.037 3.95 0.00 0.00 2.69
2690 3598 3.357166 GAAGCGGATGTCTTCGTATCT 57.643 47.619 0.00 0.00 31.82 1.98
2709 3617 1.196354 CTTGCCAGTTCAGCTTCTTCG 59.804 52.381 0.00 0.00 0.00 3.79
2808 3716 6.946340 TCTGGATAGCAGATGTAAACTCAAA 58.054 36.000 0.00 0.00 0.00 2.69
2831 3739 4.019174 CCCTTGCACCTGACAGAATTTAT 58.981 43.478 3.32 0.00 0.00 1.40
2835 3743 7.198390 CCTTGCACCTGACAGAATTTATATTG 58.802 38.462 3.32 0.00 0.00 1.90
2903 3811 4.989279 AACAACAGTTCACATGCTCTTT 57.011 36.364 0.00 0.00 0.00 2.52
2942 3850 5.530915 TGGTGTTCTGAATAGGTTCACAAAG 59.469 40.000 8.28 0.00 39.36 2.77
3063 3972 7.920160 TTTAGCTGTCACATTGTCATGATAA 57.080 32.000 7.39 7.39 34.11 1.75
3065 3974 8.510243 TTAGCTGTCACATTGTCATGATAAAT 57.490 30.769 9.08 5.00 34.11 1.40
3146 4063 2.821969 AGGATGTTGAGCGCAAATTTCT 59.178 40.909 11.47 0.00 35.42 2.52
3361 4358 6.884295 TGATTCTGTTACTTCCCACAAATAGG 59.116 38.462 0.00 0.00 0.00 2.57
3610 4611 3.356529 AAAGTAATCCTGACCAGCTGG 57.643 47.619 31.60 31.60 42.17 4.85
3748 4758 5.134661 AGATGGAGGTACTACTGCTAAGAC 58.865 45.833 0.00 0.00 42.22 3.01
3881 4900 3.795688 AAAGCTCTCTCCAATGTCCAA 57.204 42.857 0.00 0.00 0.00 3.53
3904 4923 9.912634 CCAAATGTGTGAGTTTAGTTTCATATT 57.087 29.630 0.00 0.00 0.00 1.28
3968 4991 4.782019 TTTTCCAGGAACCATCATTTCG 57.218 40.909 0.00 0.00 0.00 3.46
4089 5118 8.019669 GGAACATGCACAATCTTGTATATCATC 58.980 37.037 0.00 0.00 39.91 2.92
4364 5395 1.000843 GCAAAACCCCTGATGAACCAC 59.999 52.381 0.00 0.00 0.00 4.16
4381 5448 1.610038 CCACACAGCAGCAGAAAATGA 59.390 47.619 0.00 0.00 0.00 2.57
4415 5518 3.133901 TGAACCAGACACAAGTAGCAGAA 59.866 43.478 0.00 0.00 0.00 3.02
4472 5611 1.912371 GAAGGCCGCAGAAGAAACCG 61.912 60.000 0.00 0.00 0.00 4.44
4556 5734 1.063183 AGAGGAAGAACCAAGCAGCT 58.937 50.000 0.00 0.00 42.04 4.24
4566 5744 0.606604 CCAAGCAGCTGGAGCAAATT 59.393 50.000 17.12 0.00 45.16 1.82
4577 5755 1.607801 GAGCAAATTGGAGGCCCCAC 61.608 60.000 12.07 1.81 46.62 4.61
4597 5817 4.342092 CCACAGGAAGAAACCAACAGAAAT 59.658 41.667 0.00 0.00 0.00 2.17
4608 5828 5.473066 ACCAACAGAAATAGCAGCAAATT 57.527 34.783 0.00 0.00 0.00 1.82
4612 5832 6.090358 CCAACAGAAATAGCAGCAAATTCAAG 59.910 38.462 0.00 0.00 0.00 3.02
4743 5975 4.332828 AGCCCTGATACCAGTAACAAAAC 58.667 43.478 0.00 0.00 38.74 2.43
4774 6006 6.493802 TCTTCTTCTAACCTCAGCTTCTTACA 59.506 38.462 0.00 0.00 0.00 2.41
4884 7145 7.073342 ACGCAAACTGAACCTATAAATCTTC 57.927 36.000 0.00 0.00 0.00 2.87
4960 7260 7.171337 GGATCTTGTGATAAGATGCTTCTCTTC 59.829 40.741 14.43 4.09 40.54 2.87
5072 7389 8.077991 TCTCTGTTTTGACAGCAAGATTAATTG 58.922 33.333 1.78 0.00 37.63 2.32
5117 7449 5.295431 TGCTAATGAAAAGAATGTGTCCG 57.705 39.130 0.00 0.00 0.00 4.79
5218 7553 0.323302 TTTATCTGTCGGTGCCAGCA 59.677 50.000 0.00 0.00 0.00 4.41
5225 7560 2.360350 CGGTGCCAGCATTCCTGT 60.360 61.111 0.00 0.00 40.06 4.00
5241 7579 1.681780 CCTGTGCCCGTGGTTTATCAT 60.682 52.381 0.00 0.00 0.00 2.45
5267 7605 0.449388 GCGGTTGATCTGAAGCCAAG 59.551 55.000 0.00 0.00 0.00 3.61
5388 7750 1.727857 GCGCCAATCAACAAGGTAACG 60.728 52.381 0.00 0.00 46.39 3.18
5389 7751 1.801771 CGCCAATCAACAAGGTAACGA 59.198 47.619 0.00 0.00 46.39 3.85
5490 7876 3.565482 GCTCAAGACCAACATCACTGAAA 59.435 43.478 0.00 0.00 0.00 2.69
5652 8061 0.675633 AATGCTCTGTGGTTTGTGCC 59.324 50.000 0.00 0.00 0.00 5.01
5673 8082 6.363357 GTGCCTGTTAATTAAGCAAGTGAAAG 59.637 38.462 11.03 0.00 34.79 2.62
5686 8100 4.581409 GCAAGTGAAAGGGTAGGTTAAACA 59.419 41.667 0.00 0.00 0.00 2.83
5710 8124 3.945285 GTGTGAAGTTGTTCTTGGAAGGA 59.055 43.478 0.00 0.00 36.40 3.36
5717 8131 5.070685 AGTTGTTCTTGGAAGGATGGTTAC 58.929 41.667 0.00 0.00 0.00 2.50
5718 8132 4.993705 TGTTCTTGGAAGGATGGTTACT 57.006 40.909 0.00 0.00 0.00 2.24
5719 8133 4.651778 TGTTCTTGGAAGGATGGTTACTG 58.348 43.478 0.00 0.00 0.00 2.74
5720 8134 4.349636 TGTTCTTGGAAGGATGGTTACTGA 59.650 41.667 0.00 0.00 0.00 3.41
5721 8135 4.826274 TCTTGGAAGGATGGTTACTGAG 57.174 45.455 0.00 0.00 0.00 3.35
5722 8136 4.168101 TCTTGGAAGGATGGTTACTGAGT 58.832 43.478 0.00 0.00 0.00 3.41
5723 8137 3.981071 TGGAAGGATGGTTACTGAGTG 57.019 47.619 0.00 0.00 0.00 3.51
5724 8138 3.248024 TGGAAGGATGGTTACTGAGTGT 58.752 45.455 0.00 0.00 0.00 3.55
5725 8139 3.007940 TGGAAGGATGGTTACTGAGTGTG 59.992 47.826 0.00 0.00 0.00 3.82
5735 8149 4.382470 GGTTACTGAGTGTGCTGATGATCT 60.382 45.833 0.00 0.00 0.00 2.75
5750 8164 2.665165 TGATCTTGCTTGGTTGGTTGT 58.335 42.857 0.00 0.00 0.00 3.32
5774 8190 0.169009 GTGGAAAAGATGCAGGCGAC 59.831 55.000 0.00 0.00 0.00 5.19
5787 8203 2.202878 GCGACGCTGGGCATTCTA 60.203 61.111 13.73 0.00 0.00 2.10
5790 8206 0.861837 CGACGCTGGGCATTCTAATC 59.138 55.000 0.00 0.00 0.00 1.75
5799 8215 2.395654 GGCATTCTAATCGACTCGGAC 58.604 52.381 0.00 0.00 0.00 4.79
5877 8293 2.031495 AGTTGGAAGCAGGTAGAGGT 57.969 50.000 0.00 0.00 0.00 3.85
5933 8349 2.104859 CGTGCTGGTGCCTCTCATG 61.105 63.158 0.00 0.00 38.71 3.07
5934 8350 2.045634 TGCTGGTGCCTCTCATGC 60.046 61.111 0.00 0.00 38.71 4.06
5935 8351 2.045634 GCTGGTGCCTCTCATGCA 60.046 61.111 0.00 0.00 36.12 3.96
5936 8352 1.453379 GCTGGTGCCTCTCATGCAT 60.453 57.895 0.00 0.00 41.46 3.96
5965 8381 1.904852 CTGATCCTGTGTGTGCGTGC 61.905 60.000 0.00 0.00 0.00 5.34
5998 8414 2.268920 CGGGTGATGAGGTGGTGG 59.731 66.667 0.00 0.00 0.00 4.61
6046 8462 0.538516 GGAGGCGCTAGAGATCCTGA 60.539 60.000 7.64 0.00 0.00 3.86
6094 8510 4.973360 CCAACGCCAACGCCAACG 62.973 66.667 0.00 0.00 45.53 4.10
6126 8542 0.468226 TCCAAGACCAACGCTGAACT 59.532 50.000 0.00 0.00 0.00 3.01
6180 8596 1.930908 CTCCTACGGTGGGTCGACAC 61.931 65.000 18.91 15.66 40.60 3.67
6181 8597 1.975407 CCTACGGTGGGTCGACACT 60.975 63.158 20.37 0.15 41.09 3.55
6183 8599 2.249557 CTACGGTGGGTCGACACTCG 62.250 65.000 24.61 24.61 41.09 4.18
6194 8610 0.778815 CGACACTCGACAGAAAGTGC 59.221 55.000 2.58 0.00 45.41 4.40
6240 8656 3.522553 GCATACAGGACAGGTTACAGAC 58.477 50.000 0.00 0.00 0.00 3.51
6311 8727 5.768164 TGATGTACAGACAGAGACAAGTACA 59.232 40.000 0.33 0.00 43.80 2.90
6312 8728 5.690997 TGTACAGACAGAGACAAGTACAG 57.309 43.478 0.00 0.00 37.49 2.74
6313 8729 5.131067 TGTACAGACAGAGACAAGTACAGT 58.869 41.667 0.00 0.00 37.49 3.55
6314 8730 6.293698 TGTACAGACAGAGACAAGTACAGTA 58.706 40.000 0.00 0.00 37.49 2.74
6315 8731 6.940867 TGTACAGACAGAGACAAGTACAGTAT 59.059 38.462 0.00 0.00 37.49 2.12
6381 8797 8.653338 CGTACTGCTAAGCAAGTTTAAGATTTA 58.347 33.333 0.00 0.00 38.41 1.40
6435 8851 6.280643 TCTCACTGAAAACTTGATCGAGAAA 58.719 36.000 17.27 0.00 0.00 2.52
6437 8853 5.466728 TCACTGAAAACTTGATCGAGAAAGG 59.533 40.000 17.27 4.38 0.00 3.11
6507 8925 3.929610 GAGTCAAGGCTAGCTTTGTACTG 59.070 47.826 30.50 15.68 35.05 2.74
6544 8962 2.092968 AGCAATGGAGAAGGATAACGCA 60.093 45.455 0.00 0.00 0.00 5.24
6545 8963 2.682856 GCAATGGAGAAGGATAACGCAA 59.317 45.455 0.00 0.00 0.00 4.85
6546 8964 3.128589 GCAATGGAGAAGGATAACGCAAA 59.871 43.478 0.00 0.00 0.00 3.68
6547 8965 4.202050 GCAATGGAGAAGGATAACGCAAAT 60.202 41.667 0.00 0.00 0.00 2.32
6548 8966 5.514279 CAATGGAGAAGGATAACGCAAATC 58.486 41.667 0.00 0.00 0.00 2.17
6549 8967 4.214986 TGGAGAAGGATAACGCAAATCA 57.785 40.909 0.00 0.00 0.00 2.57
6550 8968 4.780815 TGGAGAAGGATAACGCAAATCAT 58.219 39.130 0.00 0.00 0.00 2.45
6551 8969 4.576053 TGGAGAAGGATAACGCAAATCATG 59.424 41.667 0.00 0.00 0.00 3.07
6567 9021 7.194607 CAAATCATGCTTCACCTATATCGTT 57.805 36.000 0.00 0.00 0.00 3.85
6587 9041 0.696501 GTTGGGGGCTTAGTTCTCCA 59.303 55.000 0.00 0.00 0.00 3.86
6647 9103 1.991965 CAAATACCATGCACGTTTGGC 59.008 47.619 3.91 0.00 36.41 4.52
6656 9112 1.444119 GCACGTTTGGCTGGTCAGAA 61.444 55.000 1.65 0.00 0.00 3.02
6661 9117 0.597568 TTTGGCTGGTCAGAATTGCG 59.402 50.000 1.65 0.00 0.00 4.85
6698 9154 2.376808 CAGAATGTCGGACTGAGCTT 57.623 50.000 9.88 0.00 34.07 3.74
6699 9155 2.266554 CAGAATGTCGGACTGAGCTTC 58.733 52.381 9.88 5.13 34.07 3.86
6700 9156 1.895798 AGAATGTCGGACTGAGCTTCA 59.104 47.619 9.88 0.00 0.00 3.02
6731 9187 4.142271 TGTCAGTGTGTTGGAAATTGGAAC 60.142 41.667 0.00 0.00 0.00 3.62
6788 9261 9.845740 ATGAATATGCATACTACTTGGTTGTTA 57.154 29.630 8.99 0.00 0.00 2.41
6795 9268 8.464404 TGCATACTACTTGGTTGTTACTACTAG 58.536 37.037 0.00 0.00 0.00 2.57
6864 10669 3.154710 CCCAAGTCCTAAAACCTTGTCC 58.845 50.000 0.00 0.00 35.02 4.02
6867 10672 1.350019 AGTCCTAAAACCTTGTCCGGG 59.650 52.381 0.00 0.00 0.00 5.73
6870 10675 0.963856 CTAAAACCTTGTCCGGGGCC 60.964 60.000 0.00 0.00 0.00 5.80
6925 10743 5.409826 AGAGCAAAAGAAGATTACAAGACCG 59.590 40.000 0.00 0.00 0.00 4.79
6931 10749 2.301577 AGATTACAAGACCGCAGAGC 57.698 50.000 0.00 0.00 0.00 4.09
6974 10792 8.692710 ACAATCTGAAGTTATCATGCATCAATT 58.307 29.630 0.00 0.00 37.44 2.32
6987 10805 3.321396 TGCATCAATTCTGCAGAACCAAA 59.679 39.130 30.66 16.62 44.30 3.28
6988 10806 3.676646 GCATCAATTCTGCAGAACCAAAC 59.323 43.478 30.66 15.02 39.46 2.93
6989 10807 4.796946 GCATCAATTCTGCAGAACCAAACA 60.797 41.667 30.66 7.97 39.46 2.83
6990 10808 5.475719 CATCAATTCTGCAGAACCAAACAT 58.524 37.500 30.66 10.95 36.80 2.71
6991 10809 5.125100 TCAATTCTGCAGAACCAAACATC 57.875 39.130 30.66 0.00 36.80 3.06
6994 10812 2.507484 TCTGCAGAACCAAACATCAGG 58.493 47.619 15.67 0.00 0.00 3.86
6995 10813 2.106338 TCTGCAGAACCAAACATCAGGA 59.894 45.455 15.67 0.00 0.00 3.86
6997 10815 1.541588 GCAGAACCAAACATCAGGACC 59.458 52.381 0.00 0.00 0.00 4.46
6998 10816 2.862541 CAGAACCAAACATCAGGACCA 58.137 47.619 0.00 0.00 0.00 4.02
6999 10817 2.816087 CAGAACCAAACATCAGGACCAG 59.184 50.000 0.00 0.00 0.00 4.00
7000 10818 2.443255 AGAACCAAACATCAGGACCAGT 59.557 45.455 0.00 0.00 0.00 4.00
7001 10819 2.276732 ACCAAACATCAGGACCAGTG 57.723 50.000 0.00 0.00 0.00 3.66
7002 10820 1.774254 ACCAAACATCAGGACCAGTGA 59.226 47.619 0.00 0.00 0.00 3.41
7003 10821 2.174639 ACCAAACATCAGGACCAGTGAA 59.825 45.455 0.00 0.00 0.00 3.18
7004 10822 2.554032 CCAAACATCAGGACCAGTGAAC 59.446 50.000 0.00 0.00 0.00 3.18
7005 10823 2.554032 CAAACATCAGGACCAGTGAACC 59.446 50.000 0.00 0.00 0.00 3.62
7006 10824 0.321671 ACATCAGGACCAGTGAACCG 59.678 55.000 0.00 0.00 0.00 4.44
7007 10825 0.608130 CATCAGGACCAGTGAACCGA 59.392 55.000 0.00 0.00 0.00 4.69
7008 10826 0.608640 ATCAGGACCAGTGAACCGAC 59.391 55.000 0.00 0.00 0.00 4.79
7009 10827 1.004918 CAGGACCAGTGAACCGACC 60.005 63.158 0.00 0.00 0.00 4.79
7010 10828 1.152312 AGGACCAGTGAACCGACCT 60.152 57.895 0.00 0.00 0.00 3.85
7011 10829 0.113776 AGGACCAGTGAACCGACCTA 59.886 55.000 0.00 0.00 0.00 3.08
7012 10830 1.192428 GGACCAGTGAACCGACCTAT 58.808 55.000 0.00 0.00 0.00 2.57
7013 10831 1.134788 GGACCAGTGAACCGACCTATG 60.135 57.143 0.00 0.00 0.00 2.23
7014 10832 0.902531 ACCAGTGAACCGACCTATGG 59.097 55.000 0.00 0.00 0.00 2.74
7015 10833 0.902531 CCAGTGAACCGACCTATGGT 59.097 55.000 0.00 0.00 42.98 3.55
7023 10841 3.042059 ACCGACCTATGGTTAGATGGT 57.958 47.619 0.00 0.00 35.82 3.55
7024 10842 3.381335 ACCGACCTATGGTTAGATGGTT 58.619 45.455 0.00 0.00 35.82 3.67
7025 10843 4.549668 ACCGACCTATGGTTAGATGGTTA 58.450 43.478 0.00 0.00 35.82 2.85
7026 10844 4.587684 ACCGACCTATGGTTAGATGGTTAG 59.412 45.833 0.00 0.00 35.82 2.34
7027 10845 4.831155 CCGACCTATGGTTAGATGGTTAGA 59.169 45.833 0.00 0.00 35.25 2.10
7028 10846 5.303589 CCGACCTATGGTTAGATGGTTAGAA 59.696 44.000 0.00 0.00 35.25 2.10
7029 10847 6.448006 CGACCTATGGTTAGATGGTTAGAAG 58.552 44.000 0.00 0.00 35.25 2.85
7030 10848 6.516860 CGACCTATGGTTAGATGGTTAGAAGG 60.517 46.154 0.00 0.00 35.25 3.46
7031 10849 6.449956 ACCTATGGTTAGATGGTTAGAAGGA 58.550 40.000 0.00 0.00 27.29 3.36
7032 10850 6.326843 ACCTATGGTTAGATGGTTAGAAGGAC 59.673 42.308 0.00 0.00 27.29 3.85
7033 10851 6.555360 CCTATGGTTAGATGGTTAGAAGGACT 59.445 42.308 0.00 0.00 0.00 3.85
7034 10852 5.677319 TGGTTAGATGGTTAGAAGGACTG 57.323 43.478 0.00 0.00 0.00 3.51
7035 10853 5.091552 TGGTTAGATGGTTAGAAGGACTGT 58.908 41.667 0.00 0.00 0.00 3.55
7036 10854 5.046591 TGGTTAGATGGTTAGAAGGACTGTG 60.047 44.000 0.00 0.00 0.00 3.66
7037 10855 5.420409 GTTAGATGGTTAGAAGGACTGTGG 58.580 45.833 0.00 0.00 0.00 4.17
7038 10856 3.521727 AGATGGTTAGAAGGACTGTGGT 58.478 45.455 0.00 0.00 0.00 4.16
7039 10857 4.684724 AGATGGTTAGAAGGACTGTGGTA 58.315 43.478 0.00 0.00 0.00 3.25
7040 10858 5.281314 AGATGGTTAGAAGGACTGTGGTAT 58.719 41.667 0.00 0.00 0.00 2.73
7041 10859 5.364157 AGATGGTTAGAAGGACTGTGGTATC 59.636 44.000 0.00 0.00 0.00 2.24
7042 10860 3.773119 TGGTTAGAAGGACTGTGGTATCC 59.227 47.826 0.00 0.00 34.98 2.59
7043 10861 3.134262 GGTTAGAAGGACTGTGGTATCCC 59.866 52.174 0.00 0.00 35.38 3.85
7044 10862 1.880941 AGAAGGACTGTGGTATCCCC 58.119 55.000 0.00 0.00 35.38 4.81
7045 10863 1.080498 AGAAGGACTGTGGTATCCCCA 59.920 52.381 0.00 0.00 42.51 4.96
7046 10864 1.486726 GAAGGACTGTGGTATCCCCAG 59.513 57.143 0.00 0.00 46.45 4.45
7047 10865 0.716591 AGGACTGTGGTATCCCCAGA 59.283 55.000 5.37 0.00 46.45 3.86
7048 10866 0.831307 GGACTGTGGTATCCCCAGAC 59.169 60.000 5.37 0.00 46.45 3.51
7049 10867 0.831307 GACTGTGGTATCCCCAGACC 59.169 60.000 5.37 0.00 46.45 3.85
7050 10868 0.417841 ACTGTGGTATCCCCAGACCT 59.582 55.000 5.37 0.00 46.45 3.85
7051 10869 1.203440 ACTGTGGTATCCCCAGACCTT 60.203 52.381 5.37 0.00 46.45 3.50
7052 10870 1.916181 CTGTGGTATCCCCAGACCTTT 59.084 52.381 0.00 0.00 46.45 3.11
7053 10871 1.633432 TGTGGTATCCCCAGACCTTTG 59.367 52.381 0.00 0.00 46.45 2.77
7054 10872 1.633945 GTGGTATCCCCAGACCTTTGT 59.366 52.381 0.00 0.00 46.45 2.83
7055 10873 1.913419 TGGTATCCCCAGACCTTTGTC 59.087 52.381 0.00 0.00 38.72 3.18
7056 10874 1.134491 GGTATCCCCAGACCTTTGTCG 60.134 57.143 0.00 0.00 46.51 4.35
7057 10875 1.553704 GTATCCCCAGACCTTTGTCGT 59.446 52.381 0.00 0.00 46.51 4.34
7058 10876 0.324943 ATCCCCAGACCTTTGTCGTG 59.675 55.000 0.00 0.00 46.51 4.35
7059 10877 1.052124 TCCCCAGACCTTTGTCGTGT 61.052 55.000 0.00 0.00 46.51 4.49
7060 10878 0.602905 CCCCAGACCTTTGTCGTGTC 60.603 60.000 0.00 0.00 46.51 3.67
7061 10879 0.105964 CCCAGACCTTTGTCGTGTCA 59.894 55.000 0.00 0.00 46.51 3.58
7062 10880 1.270839 CCCAGACCTTTGTCGTGTCAT 60.271 52.381 0.00 0.00 46.51 3.06
7063 10881 2.069273 CCAGACCTTTGTCGTGTCATC 58.931 52.381 0.00 0.00 46.51 2.92
7064 10882 2.547855 CCAGACCTTTGTCGTGTCATCA 60.548 50.000 0.00 0.00 46.51 3.07
7065 10883 2.733552 CAGACCTTTGTCGTGTCATCAG 59.266 50.000 0.00 0.00 46.51 2.90
7066 10884 2.365617 AGACCTTTGTCGTGTCATCAGT 59.634 45.455 0.00 0.00 46.51 3.41
7067 10885 2.731976 GACCTTTGTCGTGTCATCAGTC 59.268 50.000 0.00 0.00 0.00 3.51
7068 10886 2.102420 ACCTTTGTCGTGTCATCAGTCA 59.898 45.455 0.00 0.00 0.00 3.41
7069 10887 3.244215 ACCTTTGTCGTGTCATCAGTCAT 60.244 43.478 0.00 0.00 0.00 3.06
7070 10888 3.369147 CCTTTGTCGTGTCATCAGTCATC 59.631 47.826 0.00 0.00 0.00 2.92
7071 10889 3.658757 TTGTCGTGTCATCAGTCATCA 57.341 42.857 0.00 0.00 0.00 3.07
7072 10890 2.946564 TGTCGTGTCATCAGTCATCAC 58.053 47.619 0.00 0.00 0.00 3.06
7073 10891 2.263077 GTCGTGTCATCAGTCATCACC 58.737 52.381 0.00 0.00 0.00 4.02
7074 10892 1.892474 TCGTGTCATCAGTCATCACCA 59.108 47.619 0.00 0.00 0.00 4.17
7075 10893 2.094545 TCGTGTCATCAGTCATCACCAG 60.095 50.000 0.00 0.00 0.00 4.00
7076 10894 2.625737 GTGTCATCAGTCATCACCAGG 58.374 52.381 0.00 0.00 0.00 4.45
7077 10895 2.027745 GTGTCATCAGTCATCACCAGGT 60.028 50.000 0.00 0.00 0.00 4.00
7078 10896 2.234661 TGTCATCAGTCATCACCAGGTC 59.765 50.000 0.00 0.00 0.00 3.85
7079 10897 2.234661 GTCATCAGTCATCACCAGGTCA 59.765 50.000 0.00 0.00 0.00 4.02
7080 10898 2.905736 TCATCAGTCATCACCAGGTCAA 59.094 45.455 0.00 0.00 0.00 3.18
7081 10899 3.520721 TCATCAGTCATCACCAGGTCAAT 59.479 43.478 0.00 0.00 0.00 2.57
7082 10900 4.019051 TCATCAGTCATCACCAGGTCAATT 60.019 41.667 0.00 0.00 0.00 2.32
7083 10901 4.371624 TCAGTCATCACCAGGTCAATTT 57.628 40.909 0.00 0.00 0.00 1.82
7084 10902 4.326826 TCAGTCATCACCAGGTCAATTTC 58.673 43.478 0.00 0.00 0.00 2.17
7085 10903 3.441572 CAGTCATCACCAGGTCAATTTCC 59.558 47.826 0.00 0.00 0.00 3.13
7086 10904 2.755103 GTCATCACCAGGTCAATTTCCC 59.245 50.000 0.00 0.00 0.00 3.97
7087 10905 2.378208 TCATCACCAGGTCAATTTCCCA 59.622 45.455 0.00 0.00 0.00 4.37
7088 10906 3.011595 TCATCACCAGGTCAATTTCCCAT 59.988 43.478 0.00 0.00 0.00 4.00
7089 10907 4.229353 TCATCACCAGGTCAATTTCCCATA 59.771 41.667 0.00 0.00 0.00 2.74
7090 10908 4.235079 TCACCAGGTCAATTTCCCATAG 57.765 45.455 0.00 0.00 0.00 2.23
7091 10909 3.849574 TCACCAGGTCAATTTCCCATAGA 59.150 43.478 0.00 0.00 0.00 1.98
7092 10910 4.290985 TCACCAGGTCAATTTCCCATAGAA 59.709 41.667 0.00 0.00 0.00 2.10
7093 10911 4.641989 CACCAGGTCAATTTCCCATAGAAG 59.358 45.833 0.00 0.00 35.40 2.85
7094 10912 4.540099 ACCAGGTCAATTTCCCATAGAAGA 59.460 41.667 0.00 0.00 35.40 2.87
7095 10913 5.015178 ACCAGGTCAATTTCCCATAGAAGAA 59.985 40.000 0.00 0.00 35.40 2.52
7096 10914 6.131961 CCAGGTCAATTTCCCATAGAAGAAT 58.868 40.000 0.00 0.00 35.40 2.40
7097 10915 7.091993 ACCAGGTCAATTTCCCATAGAAGAATA 60.092 37.037 0.00 0.00 35.40 1.75
7098 10916 7.229506 CCAGGTCAATTTCCCATAGAAGAATAC 59.770 40.741 0.00 0.00 35.40 1.89
7099 10917 7.995488 CAGGTCAATTTCCCATAGAAGAATACT 59.005 37.037 0.00 0.00 35.40 2.12
7100 10918 8.214364 AGGTCAATTTCCCATAGAAGAATACTC 58.786 37.037 0.00 0.00 35.40 2.59
7101 10919 7.445707 GGTCAATTTCCCATAGAAGAATACTCC 59.554 40.741 0.00 0.00 35.40 3.85
7102 10920 7.993183 GTCAATTTCCCATAGAAGAATACTCCA 59.007 37.037 0.00 0.00 35.40 3.86
7103 10921 8.727149 TCAATTTCCCATAGAAGAATACTCCAT 58.273 33.333 0.00 0.00 35.40 3.41
7104 10922 9.007901 CAATTTCCCATAGAAGAATACTCCATC 57.992 37.037 0.00 0.00 35.40 3.51
7105 10923 5.984695 TCCCATAGAAGAATACTCCATCG 57.015 43.478 0.00 0.00 0.00 3.84
7106 10924 4.772624 TCCCATAGAAGAATACTCCATCGG 59.227 45.833 0.00 0.00 0.00 4.18
7107 10925 4.081420 CCCATAGAAGAATACTCCATCGGG 60.081 50.000 0.00 0.00 0.00 5.14
7108 10926 4.528596 CCATAGAAGAATACTCCATCGGGT 59.471 45.833 0.00 0.00 34.93 5.28
7109 10927 5.336849 CCATAGAAGAATACTCCATCGGGTC 60.337 48.000 0.00 0.00 34.93 4.46
7110 10928 3.917300 AGAAGAATACTCCATCGGGTCT 58.083 45.455 0.00 0.00 34.93 3.85
7111 10929 4.290942 AGAAGAATACTCCATCGGGTCTT 58.709 43.478 0.00 0.00 34.93 3.01
7112 10930 4.717280 AGAAGAATACTCCATCGGGTCTTT 59.283 41.667 0.00 0.00 34.93 2.52
7113 10931 5.897824 AGAAGAATACTCCATCGGGTCTTTA 59.102 40.000 0.00 0.00 34.93 1.85
7114 10932 5.793030 AGAATACTCCATCGGGTCTTTAG 57.207 43.478 0.00 0.00 34.93 1.85
7115 10933 5.209659 AGAATACTCCATCGGGTCTTTAGT 58.790 41.667 0.00 0.00 34.93 2.24
7116 10934 4.939052 ATACTCCATCGGGTCTTTAGTG 57.061 45.455 0.00 0.00 34.93 2.74
7117 10935 2.537143 ACTCCATCGGGTCTTTAGTGT 58.463 47.619 0.00 0.00 34.93 3.55
7118 10936 2.233922 ACTCCATCGGGTCTTTAGTGTG 59.766 50.000 0.00 0.00 34.93 3.82
7119 10937 1.066430 TCCATCGGGTCTTTAGTGTGC 60.066 52.381 0.00 0.00 34.93 4.57
7120 10938 0.999406 CATCGGGTCTTTAGTGTGCG 59.001 55.000 0.00 0.00 0.00 5.34
7121 10939 0.739813 ATCGGGTCTTTAGTGTGCGC 60.740 55.000 0.00 0.00 0.00 6.09
7122 10940 2.388232 CGGGTCTTTAGTGTGCGCC 61.388 63.158 4.18 0.00 0.00 6.53
7123 10941 1.003718 GGGTCTTTAGTGTGCGCCT 60.004 57.895 4.18 0.00 0.00 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
157 178 0.536460 CAAGGTGCGTGTACCCCTTT 60.536 55.000 3.33 0.00 41.83 3.11
254 275 0.904649 TCAATGGATGTGACCTCGCT 59.095 50.000 0.00 0.00 0.00 4.93
361 385 3.760035 GTCTTCGCCGCCCTCTCA 61.760 66.667 0.00 0.00 0.00 3.27
419 528 2.622452 CGTAAGTCCCTAACTCCTCCCA 60.622 54.545 0.00 0.00 37.17 4.37
428 542 3.119009 TCCCCATTCGTAAGTCCCTAA 57.881 47.619 0.00 0.00 39.48 2.69
435 549 2.480419 GCATCGATTCCCCATTCGTAAG 59.520 50.000 0.00 0.00 36.74 2.34
661 785 4.845225 TGTACATAAAGTTGTAGGGGTGGA 59.155 41.667 0.00 0.00 32.92 4.02
711 836 3.437049 CGTCCTTGAAAAAGGCTCCTTAG 59.563 47.826 0.98 0.00 39.80 2.18
712 837 3.181448 ACGTCCTTGAAAAAGGCTCCTTA 60.181 43.478 0.98 0.00 39.80 2.69
807 933 1.117150 GGTGCCGTGGTCTTATAGGA 58.883 55.000 0.00 0.00 0.00 2.94
1317 1686 3.449227 TGAGAAGGACGCGCCGAT 61.449 61.111 5.73 3.21 43.43 4.18
1821 2379 1.229209 ACCTCCGCCCTGAGAGAAA 60.229 57.895 0.00 0.00 34.11 2.52
2175 2790 3.703001 AGTGGATTCAGTGGAAACGAT 57.297 42.857 0.00 0.00 36.43 3.73
2377 3148 5.760743 TCAATTCCGACAAAACATAGTGACA 59.239 36.000 0.00 0.00 0.00 3.58
2381 3152 4.378046 GCGTCAATTCCGACAAAACATAGT 60.378 41.667 0.00 0.00 35.54 2.12
2382 3153 4.088648 GCGTCAATTCCGACAAAACATAG 58.911 43.478 0.00 0.00 35.54 2.23
2472 3374 3.153919 GCATAAGGACTGTTGGTTTGGA 58.846 45.455 0.00 0.00 0.00 3.53
2591 3499 2.409948 ACTGGGCAGCAGATAAAGAC 57.590 50.000 0.00 0.00 0.00 3.01
2593 3501 2.163010 CACAACTGGGCAGCAGATAAAG 59.837 50.000 0.00 0.00 0.00 1.85
2690 3598 1.229428 CGAAGAAGCTGAACTGGCAA 58.771 50.000 0.00 0.00 0.00 4.52
2709 3617 0.498927 GAGATTCGTCGCGCATACAC 59.501 55.000 8.75 0.00 0.00 2.90
2808 3716 0.773644 ATTCTGTCAGGTGCAAGGGT 59.226 50.000 0.00 0.00 0.00 4.34
2831 3739 7.416213 CCCCGCAAAAGAAAGATGAATACAATA 60.416 37.037 0.00 0.00 0.00 1.90
2835 3743 4.398044 TCCCCGCAAAAGAAAGATGAATAC 59.602 41.667 0.00 0.00 0.00 1.89
2903 3811 5.181690 GAACACCAAAATCAGTGTGCTTA 57.818 39.130 0.00 0.00 46.22 3.09
2942 3850 5.128919 ACATGCCCAGTAAATGAGAGAATC 58.871 41.667 0.00 0.00 0.00 2.52
3081 3997 7.346751 ACAACATCAATTGGTCACTTTAGTT 57.653 32.000 5.42 0.00 33.63 2.24
3091 4007 3.253188 CCTGTCGAACAACATCAATTGGT 59.747 43.478 5.42 0.00 33.63 3.67
3284 4201 6.016276 CAGCAACTACTATCACCCTTTTGTTT 60.016 38.462 0.00 0.00 0.00 2.83
3289 4286 3.264450 AGCAGCAACTACTATCACCCTTT 59.736 43.478 0.00 0.00 0.00 3.11
3361 4358 4.864633 TGCTCTCATTAGTCGATGATGTC 58.135 43.478 0.00 0.00 35.62 3.06
3610 4611 1.737793 CAGTTTGCGGGTGAGAATACC 59.262 52.381 0.00 0.00 40.10 2.73
3622 4632 3.993081 GAGGATATCTCATCCAGTTTGCG 59.007 47.826 2.05 0.00 42.02 4.85
3748 4758 6.710744 AGAGTTGTATCAAAACTAGTGGTTGG 59.289 38.462 15.86 0.00 37.98 3.77
3853 4872 6.951971 ACATTGGAGAGAGCTTTACATAGTT 58.048 36.000 0.00 0.00 0.00 2.24
3968 4991 8.516234 AGTGTTAGATATCATGAATAGACGACC 58.484 37.037 5.32 0.00 0.00 4.79
4089 5118 0.670546 ACGACGGTTGAGCATTCCAG 60.671 55.000 1.53 0.00 0.00 3.86
4364 5395 2.729882 GCTTTCATTTTCTGCTGCTGTG 59.270 45.455 0.00 0.00 0.00 3.66
4381 5448 0.040204 CTGGTTCATCAGGGGGCTTT 59.960 55.000 0.00 0.00 0.00 3.51
4415 5518 1.575447 GGTTCATCAGGGGGCTTCCT 61.575 60.000 0.00 0.00 37.71 3.36
4472 5611 1.398390 CTTCCATTTGCTACTGCCGTC 59.602 52.381 0.00 0.00 38.71 4.79
4556 5734 1.305213 GGGCCTCCAATTTGCTCCA 60.305 57.895 0.84 0.00 0.00 3.86
4566 5744 2.935481 CTTCCTGTGGGGCCTCCA 60.935 66.667 0.00 4.11 44.79 3.86
4577 5755 5.241506 TGCTATTTCTGTTGGTTTCTTCCTG 59.758 40.000 0.00 0.00 0.00 3.86
4597 5817 1.185315 GGGCCTTGAATTTGCTGCTA 58.815 50.000 0.84 0.00 0.00 3.49
4743 5975 5.044558 GCTGAGGTTAGAAGAAGATTACGG 58.955 45.833 0.00 0.00 0.00 4.02
4859 7120 7.820386 TGAAGATTTATAGGTTCAGTTTGCGTA 59.180 33.333 0.00 0.00 0.00 4.42
4884 7145 7.320399 GTTTAATACCCCTTCTTGTGGATTTG 58.680 38.462 0.00 0.00 0.00 2.32
5072 7389 7.067494 AGCATTATAACTGAAAGACACCAATCC 59.933 37.037 0.00 0.00 37.43 3.01
5112 7444 2.984562 TGCATATTCAGAAAGCGGACA 58.015 42.857 0.00 0.00 0.00 4.02
5117 7449 3.568853 AGGCAGATGCATATTCAGAAAGC 59.431 43.478 0.00 0.00 44.36 3.51
5218 7553 0.402504 TAAACCACGGGCACAGGAAT 59.597 50.000 0.71 0.00 0.00 3.01
5225 7560 0.537653 TCGATGATAAACCACGGGCA 59.462 50.000 0.00 0.00 0.00 5.36
5241 7579 0.606096 TCAGATCAACCGCCTTTCGA 59.394 50.000 0.00 0.00 41.67 3.71
5267 7605 0.988832 TACCATCCACTGTTCCACCC 59.011 55.000 0.00 0.00 0.00 4.61
5388 7750 3.242123 CGTTCAGCCGAGCTAGAAAATTC 60.242 47.826 0.00 0.00 36.40 2.17
5389 7751 2.673368 CGTTCAGCCGAGCTAGAAAATT 59.327 45.455 0.00 0.00 36.40 1.82
5652 8061 6.981722 ACCCTTTCACTTGCTTAATTAACAG 58.018 36.000 0.00 0.00 0.00 3.16
5673 8082 5.128205 ACTTCACACTTGTTTAACCTACCC 58.872 41.667 0.00 0.00 0.00 3.69
5686 8100 4.399303 CCTTCCAAGAACAACTTCACACTT 59.601 41.667 0.00 0.00 36.61 3.16
5710 8124 3.261643 TCATCAGCACACTCAGTAACCAT 59.738 43.478 0.00 0.00 0.00 3.55
5717 8131 2.352034 GCAAGATCATCAGCACACTCAG 59.648 50.000 0.00 0.00 0.00 3.35
5718 8132 2.027469 AGCAAGATCATCAGCACACTCA 60.027 45.455 5.08 0.00 0.00 3.41
5719 8133 2.630158 AGCAAGATCATCAGCACACTC 58.370 47.619 5.08 0.00 0.00 3.51
5720 8134 2.747989 CAAGCAAGATCATCAGCACACT 59.252 45.455 5.08 0.00 0.00 3.55
5721 8135 2.159421 CCAAGCAAGATCATCAGCACAC 60.159 50.000 5.08 0.00 0.00 3.82
5722 8136 2.089201 CCAAGCAAGATCATCAGCACA 58.911 47.619 5.08 0.00 0.00 4.57
5723 8137 2.089980 ACCAAGCAAGATCATCAGCAC 58.910 47.619 5.08 0.00 0.00 4.40
5724 8138 2.490509 CAACCAAGCAAGATCATCAGCA 59.509 45.455 5.08 0.00 0.00 4.41
5725 8139 2.159282 CCAACCAAGCAAGATCATCAGC 60.159 50.000 0.00 0.00 0.00 4.26
5735 8149 1.411977 CATCCACAACCAACCAAGCAA 59.588 47.619 0.00 0.00 0.00 3.91
5750 8164 2.449464 CCTGCATCTTTTCCACATCCA 58.551 47.619 0.00 0.00 0.00 3.41
5774 8190 0.861837 GTCGATTAGAATGCCCAGCG 59.138 55.000 0.00 0.00 0.00 5.18
5787 8203 3.880591 TCGTCGTCCGAGTCGATT 58.119 55.556 15.64 0.00 41.60 3.34
5799 8215 3.747514 CTCGTAGTCGCCGTCGTCG 62.748 68.421 0.00 0.00 36.96 5.12
5812 8228 3.075005 GCTGTCAGCCCCCTCGTA 61.075 66.667 14.27 0.00 34.48 3.43
5877 8293 1.080093 CAGTTCAGTTCCGCGGCTA 60.080 57.895 23.51 8.19 0.00 3.93
5965 8381 2.747460 CGGACACCCTGCACCATG 60.747 66.667 0.00 0.00 0.00 3.66
6036 8452 2.841988 GCCCGCCTCAGGATCTCT 60.842 66.667 0.00 0.00 0.00 3.10
6094 8510 4.980805 TTGGACGAGCACGGTGGC 62.981 66.667 10.60 2.41 44.46 5.01
6095 8511 2.738521 CTTGGACGAGCACGGTGG 60.739 66.667 10.60 0.00 44.46 4.61
6096 8512 2.022129 GTCTTGGACGAGCACGGTG 61.022 63.158 8.74 3.15 44.46 4.94
6097 8513 2.338984 GTCTTGGACGAGCACGGT 59.661 61.111 8.74 0.00 44.46 4.83
6098 8514 2.432628 GGTCTTGGACGAGCACGG 60.433 66.667 8.74 0.00 44.46 4.94
6180 8596 4.745125 TCTGTTAAAGCACTTTCTGTCGAG 59.255 41.667 0.00 0.00 34.23 4.04
6181 8597 4.689071 TCTGTTAAAGCACTTTCTGTCGA 58.311 39.130 0.00 0.00 34.23 4.20
6183 8599 4.816925 ACCTCTGTTAAAGCACTTTCTGTC 59.183 41.667 0.00 0.00 34.23 3.51
6184 8600 4.576463 CACCTCTGTTAAAGCACTTTCTGT 59.424 41.667 0.00 0.00 34.23 3.41
6185 8601 4.576463 ACACCTCTGTTAAAGCACTTTCTG 59.424 41.667 0.00 0.00 34.23 3.02
6186 8602 4.576463 CACACCTCTGTTAAAGCACTTTCT 59.424 41.667 0.00 0.00 34.23 2.52
6187 8603 4.261197 CCACACCTCTGTTAAAGCACTTTC 60.261 45.833 0.00 0.00 34.23 2.62
6188 8604 3.632145 CCACACCTCTGTTAAAGCACTTT 59.368 43.478 0.70 0.70 36.63 2.66
6189 8605 3.214328 CCACACCTCTGTTAAAGCACTT 58.786 45.455 0.00 0.00 0.00 3.16
6194 8610 4.212636 CCGTTAACCACACCTCTGTTAAAG 59.787 45.833 0.00 0.00 36.52 1.85
6240 8656 1.669265 GAATTTTTACCTCTCCCGGCG 59.331 52.381 0.00 0.00 0.00 6.46
6311 8727 8.264347 TGCAAAGGGAAAAAGAAGAAAAATACT 58.736 29.630 0.00 0.00 0.00 2.12
6312 8728 8.335356 GTGCAAAGGGAAAAAGAAGAAAAATAC 58.665 33.333 0.00 0.00 0.00 1.89
6313 8729 8.043710 TGTGCAAAGGGAAAAAGAAGAAAAATA 58.956 29.630 0.00 0.00 0.00 1.40
6314 8730 6.883756 TGTGCAAAGGGAAAAAGAAGAAAAAT 59.116 30.769 0.00 0.00 0.00 1.82
6315 8731 6.234177 TGTGCAAAGGGAAAAAGAAGAAAAA 58.766 32.000 0.00 0.00 0.00 1.94
6381 8797 4.625607 AGAGTTCAACTCCTTTTCCGAT 57.374 40.909 14.27 0.00 46.18 4.18
6435 8851 6.916360 TTTTGATCCAATAACAAAGCTCCT 57.084 33.333 0.00 0.00 35.48 3.69
6437 8853 9.508567 GAGTATTTTGATCCAATAACAAAGCTC 57.491 33.333 0.00 0.00 35.48 4.09
6544 8962 6.767902 ACAACGATATAGGTGAAGCATGATTT 59.232 34.615 7.96 0.00 32.17 2.17
6545 8963 6.291377 ACAACGATATAGGTGAAGCATGATT 58.709 36.000 7.96 0.00 32.17 2.57
6546 8964 5.858381 ACAACGATATAGGTGAAGCATGAT 58.142 37.500 7.96 0.00 32.17 2.45
6547 8965 5.276461 ACAACGATATAGGTGAAGCATGA 57.724 39.130 7.96 0.00 32.17 3.07
6548 8966 5.277490 CCAACAACGATATAGGTGAAGCATG 60.277 44.000 7.96 0.00 32.17 4.06
6549 8967 4.816385 CCAACAACGATATAGGTGAAGCAT 59.184 41.667 7.96 0.00 32.17 3.79
6550 8968 4.188462 CCAACAACGATATAGGTGAAGCA 58.812 43.478 7.96 0.00 32.17 3.91
6551 8969 3.560068 CCCAACAACGATATAGGTGAAGC 59.440 47.826 7.96 0.00 32.17 3.86
6567 9021 0.696501 GGAGAACTAAGCCCCCAACA 59.303 55.000 0.00 0.00 0.00 3.33
6587 9041 4.817318 ACCACAAACAACCAAAGAACAT 57.183 36.364 0.00 0.00 0.00 2.71
6633 9089 2.259204 CCAGCCAAACGTGCATGG 59.741 61.111 11.36 5.17 39.80 3.66
6647 9103 2.208431 GGAGATCGCAATTCTGACCAG 58.792 52.381 0.00 0.00 0.00 4.00
6656 9112 4.815533 AGCTATACATGGAGATCGCAAT 57.184 40.909 0.00 0.00 0.00 3.56
6661 9117 7.835822 ACATTCTGTAGCTATACATGGAGATC 58.164 38.462 0.00 0.00 41.05 2.75
6692 9148 3.323115 ACTGACATTCTCACTGAAGCTCA 59.677 43.478 0.00 0.00 38.18 4.26
6693 9149 3.679025 CACTGACATTCTCACTGAAGCTC 59.321 47.826 0.00 0.00 38.18 4.09
6694 9150 3.070734 ACACTGACATTCTCACTGAAGCT 59.929 43.478 0.00 0.00 38.18 3.74
6695 9151 3.186001 CACACTGACATTCTCACTGAAGC 59.814 47.826 0.00 0.00 38.18 3.86
6696 9152 4.375272 ACACACTGACATTCTCACTGAAG 58.625 43.478 0.00 0.00 38.18 3.02
6697 9153 4.406648 ACACACTGACATTCTCACTGAA 57.593 40.909 0.00 0.00 39.24 3.02
6698 9154 4.122046 CAACACACTGACATTCTCACTGA 58.878 43.478 0.00 0.00 0.00 3.41
6699 9155 3.249320 CCAACACACTGACATTCTCACTG 59.751 47.826 0.00 0.00 0.00 3.66
6700 9156 3.134623 TCCAACACACTGACATTCTCACT 59.865 43.478 0.00 0.00 0.00 3.41
6701 9157 3.466836 TCCAACACACTGACATTCTCAC 58.533 45.455 0.00 0.00 0.00 3.51
6702 9158 3.836365 TCCAACACACTGACATTCTCA 57.164 42.857 0.00 0.00 0.00 3.27
6703 9159 5.695851 ATTTCCAACACACTGACATTCTC 57.304 39.130 0.00 0.00 0.00 2.87
6704 9160 5.221303 CCAATTTCCAACACACTGACATTCT 60.221 40.000 0.00 0.00 0.00 2.40
6705 9161 4.984161 CCAATTTCCAACACACTGACATTC 59.016 41.667 0.00 0.00 0.00 2.67
6706 9162 4.648762 TCCAATTTCCAACACACTGACATT 59.351 37.500 0.00 0.00 0.00 2.71
6707 9163 4.214310 TCCAATTTCCAACACACTGACAT 58.786 39.130 0.00 0.00 0.00 3.06
6708 9164 3.625853 TCCAATTTCCAACACACTGACA 58.374 40.909 0.00 0.00 0.00 3.58
6709 9165 4.097892 AGTTCCAATTTCCAACACACTGAC 59.902 41.667 0.00 0.00 0.00 3.51
6710 9166 4.277476 AGTTCCAATTTCCAACACACTGA 58.723 39.130 0.00 0.00 0.00 3.41
6711 9167 4.339247 AGAGTTCCAATTTCCAACACACTG 59.661 41.667 0.00 0.00 0.00 3.66
6795 9268 6.200286 TCGCTTCGATAGTGGAAAATGAATAC 59.800 38.462 7.86 0.00 35.03 1.89
6800 9273 6.355638 GTTATCGCTTCGATAGTGGAAAATG 58.644 40.000 8.62 0.00 46.95 2.32
6801 9274 5.175126 CGTTATCGCTTCGATAGTGGAAAAT 59.825 40.000 8.62 0.00 46.95 1.82
6864 10669 1.078426 ATGTTTCGAAGAGGCCCCG 60.078 57.895 0.00 0.00 38.43 5.73
6867 10672 0.449388 CTGCATGTTTCGAAGAGGCC 59.551 55.000 11.79 0.00 38.43 5.19
6870 10675 4.847633 TGTTTTCTGCATGTTTCGAAGAG 58.152 39.130 0.00 0.00 38.43 2.85
6925 10743 2.047844 TTGCCAGACTCGCTCTGC 60.048 61.111 4.78 2.43 44.80 4.26
6931 10749 1.159713 TGTGCAAGTTGCCAGACTCG 61.160 55.000 24.59 0.00 44.23 4.18
6932 10750 1.024271 TTGTGCAAGTTGCCAGACTC 58.976 50.000 24.59 8.85 44.23 3.36
6933 10751 1.610522 GATTGTGCAAGTTGCCAGACT 59.389 47.619 24.59 10.47 44.23 3.24
6974 10792 2.106338 TCCTGATGTTTGGTTCTGCAGA 59.894 45.455 13.74 13.74 0.00 4.26
6987 10805 0.321671 CGGTTCACTGGTCCTGATGT 59.678 55.000 2.23 0.00 0.00 3.06
6988 10806 0.608130 TCGGTTCACTGGTCCTGATG 59.392 55.000 2.23 0.00 0.00 3.07
6989 10807 0.608640 GTCGGTTCACTGGTCCTGAT 59.391 55.000 2.23 0.00 0.00 2.90
6990 10808 1.469335 GGTCGGTTCACTGGTCCTGA 61.469 60.000 2.23 0.00 0.00 3.86
6991 10809 1.004918 GGTCGGTTCACTGGTCCTG 60.005 63.158 0.00 0.00 0.00 3.86
6994 10812 1.134788 CCATAGGTCGGTTCACTGGTC 60.135 57.143 0.00 0.00 0.00 4.02
6995 10813 0.902531 CCATAGGTCGGTTCACTGGT 59.097 55.000 0.00 0.00 0.00 4.00
6997 10815 2.762535 AACCATAGGTCGGTTCACTG 57.237 50.000 0.00 0.00 43.36 3.66
6998 10816 3.705051 TCTAACCATAGGTCGGTTCACT 58.295 45.455 0.00 0.00 43.36 3.41
6999 10817 4.369182 CATCTAACCATAGGTCGGTTCAC 58.631 47.826 0.00 0.00 43.36 3.18
7000 10818 3.386726 CCATCTAACCATAGGTCGGTTCA 59.613 47.826 0.00 0.00 43.36 3.18
7001 10819 3.387050 ACCATCTAACCATAGGTCGGTTC 59.613 47.826 0.00 0.00 43.36 3.62
7003 10821 3.042059 ACCATCTAACCATAGGTCGGT 57.958 47.619 0.00 0.00 38.85 4.69
7004 10822 4.831155 TCTAACCATCTAACCATAGGTCGG 59.169 45.833 0.00 0.00 33.12 4.79
7005 10823 6.401047 TTCTAACCATCTAACCATAGGTCG 57.599 41.667 0.00 0.00 33.12 4.79
7006 10824 6.553852 TCCTTCTAACCATCTAACCATAGGTC 59.446 42.308 0.00 0.00 33.12 3.85
7007 10825 6.326843 GTCCTTCTAACCATCTAACCATAGGT 59.673 42.308 0.00 0.00 37.65 3.08
7008 10826 6.555360 AGTCCTTCTAACCATCTAACCATAGG 59.445 42.308 0.00 0.00 0.00 2.57
7009 10827 7.070074 ACAGTCCTTCTAACCATCTAACCATAG 59.930 40.741 0.00 0.00 0.00 2.23
7010 10828 6.901300 ACAGTCCTTCTAACCATCTAACCATA 59.099 38.462 0.00 0.00 0.00 2.74
7011 10829 5.726793 ACAGTCCTTCTAACCATCTAACCAT 59.273 40.000 0.00 0.00 0.00 3.55
7012 10830 5.046591 CACAGTCCTTCTAACCATCTAACCA 60.047 44.000 0.00 0.00 0.00 3.67
7013 10831 5.420409 CACAGTCCTTCTAACCATCTAACC 58.580 45.833 0.00 0.00 0.00 2.85
7014 10832 5.046520 ACCACAGTCCTTCTAACCATCTAAC 60.047 44.000 0.00 0.00 0.00 2.34
7015 10833 5.091552 ACCACAGTCCTTCTAACCATCTAA 58.908 41.667 0.00 0.00 0.00 2.10
7016 10834 4.684724 ACCACAGTCCTTCTAACCATCTA 58.315 43.478 0.00 0.00 0.00 1.98
7017 10835 3.521727 ACCACAGTCCTTCTAACCATCT 58.478 45.455 0.00 0.00 0.00 2.90
7018 10836 3.983044 ACCACAGTCCTTCTAACCATC 57.017 47.619 0.00 0.00 0.00 3.51
7019 10837 4.409247 GGATACCACAGTCCTTCTAACCAT 59.591 45.833 0.00 0.00 0.00 3.55
7020 10838 3.773119 GGATACCACAGTCCTTCTAACCA 59.227 47.826 0.00 0.00 0.00 3.67
7021 10839 4.403585 GGATACCACAGTCCTTCTAACC 57.596 50.000 0.00 0.00 0.00 2.85
7037 10855 1.553704 ACGACAAAGGTCTGGGGATAC 59.446 52.381 0.00 0.00 42.05 2.24
7038 10856 1.553248 CACGACAAAGGTCTGGGGATA 59.447 52.381 0.00 0.00 42.05 2.59
7039 10857 0.324943 CACGACAAAGGTCTGGGGAT 59.675 55.000 0.00 0.00 42.05 3.85
7040 10858 1.052124 ACACGACAAAGGTCTGGGGA 61.052 55.000 0.00 0.00 42.05 4.81
7041 10859 0.602905 GACACGACAAAGGTCTGGGG 60.603 60.000 0.00 0.00 42.05 4.96
7042 10860 0.105964 TGACACGACAAAGGTCTGGG 59.894 55.000 0.00 0.00 42.05 4.45
7043 10861 2.069273 GATGACACGACAAAGGTCTGG 58.931 52.381 0.00 0.00 42.05 3.86
7044 10862 2.733552 CTGATGACACGACAAAGGTCTG 59.266 50.000 0.00 0.00 42.05 3.51
7045 10863 2.365617 ACTGATGACACGACAAAGGTCT 59.634 45.455 0.00 0.00 42.05 3.85
7046 10864 2.731976 GACTGATGACACGACAAAGGTC 59.268 50.000 0.00 0.00 40.77 3.85
7047 10865 2.102420 TGACTGATGACACGACAAAGGT 59.898 45.455 0.00 0.00 0.00 3.50
7048 10866 2.754472 TGACTGATGACACGACAAAGG 58.246 47.619 0.00 0.00 0.00 3.11
7049 10867 3.989817 TGATGACTGATGACACGACAAAG 59.010 43.478 0.00 0.00 0.00 2.77
7050 10868 3.740832 GTGATGACTGATGACACGACAAA 59.259 43.478 0.00 0.00 0.00 2.83
7051 10869 3.317150 GTGATGACTGATGACACGACAA 58.683 45.455 0.00 0.00 0.00 3.18
7052 10870 2.352715 GGTGATGACTGATGACACGACA 60.353 50.000 0.00 0.00 33.08 4.35
7053 10871 2.263077 GGTGATGACTGATGACACGAC 58.737 52.381 0.00 0.00 33.08 4.34
7054 10872 1.892474 TGGTGATGACTGATGACACGA 59.108 47.619 0.00 0.00 33.08 4.35
7055 10873 2.265683 CTGGTGATGACTGATGACACG 58.734 52.381 0.00 0.00 33.08 4.49
7056 10874 2.027745 ACCTGGTGATGACTGATGACAC 60.028 50.000 0.00 0.00 0.00 3.67
7057 10875 2.234661 GACCTGGTGATGACTGATGACA 59.765 50.000 2.82 0.00 0.00 3.58
7058 10876 2.234661 TGACCTGGTGATGACTGATGAC 59.765 50.000 2.82 0.00 0.00 3.06
7059 10877 2.539302 TGACCTGGTGATGACTGATGA 58.461 47.619 2.82 0.00 0.00 2.92
7060 10878 3.339253 TTGACCTGGTGATGACTGATG 57.661 47.619 2.82 0.00 0.00 3.07
7061 10879 4.581309 AATTGACCTGGTGATGACTGAT 57.419 40.909 2.82 0.00 0.00 2.90
7062 10880 4.326826 GAAATTGACCTGGTGATGACTGA 58.673 43.478 2.82 0.00 0.00 3.41
7063 10881 3.441572 GGAAATTGACCTGGTGATGACTG 59.558 47.826 2.82 0.00 0.00 3.51
7064 10882 3.562176 GGGAAATTGACCTGGTGATGACT 60.562 47.826 2.82 0.00 0.00 3.41
7065 10883 2.755103 GGGAAATTGACCTGGTGATGAC 59.245 50.000 2.82 0.00 0.00 3.06
7066 10884 2.378208 TGGGAAATTGACCTGGTGATGA 59.622 45.455 2.82 0.00 0.00 2.92
7067 10885 2.806434 TGGGAAATTGACCTGGTGATG 58.194 47.619 2.82 0.00 0.00 3.07
7068 10886 3.763557 ATGGGAAATTGACCTGGTGAT 57.236 42.857 2.82 0.00 0.00 3.06
7069 10887 3.849574 TCTATGGGAAATTGACCTGGTGA 59.150 43.478 2.82 0.00 0.00 4.02
7070 10888 4.235079 TCTATGGGAAATTGACCTGGTG 57.765 45.455 2.82 0.00 0.00 4.17
7071 10889 4.540099 TCTTCTATGGGAAATTGACCTGGT 59.460 41.667 0.00 0.00 33.07 4.00
7072 10890 5.116084 TCTTCTATGGGAAATTGACCTGG 57.884 43.478 0.00 0.00 33.07 4.45
7073 10891 7.995488 AGTATTCTTCTATGGGAAATTGACCTG 59.005 37.037 0.95 0.00 33.07 4.00
7074 10892 8.107196 AGTATTCTTCTATGGGAAATTGACCT 57.893 34.615 0.95 0.00 33.07 3.85
7075 10893 7.445707 GGAGTATTCTTCTATGGGAAATTGACC 59.554 40.741 0.00 0.00 33.07 4.02
7076 10894 7.993183 TGGAGTATTCTTCTATGGGAAATTGAC 59.007 37.037 0.00 0.00 33.07 3.18
7077 10895 8.101309 TGGAGTATTCTTCTATGGGAAATTGA 57.899 34.615 0.00 0.00 33.07 2.57
7078 10896 8.930846 ATGGAGTATTCTTCTATGGGAAATTG 57.069 34.615 0.00 0.00 33.07 2.32
7079 10897 7.880195 CGATGGAGTATTCTTCTATGGGAAATT 59.120 37.037 0.00 0.00 33.07 1.82
7080 10898 7.390027 CGATGGAGTATTCTTCTATGGGAAAT 58.610 38.462 0.00 0.00 33.07 2.17
7081 10899 6.239600 CCGATGGAGTATTCTTCTATGGGAAA 60.240 42.308 0.00 0.00 33.07 3.13
7082 10900 5.246203 CCGATGGAGTATTCTTCTATGGGAA 59.754 44.000 0.00 0.00 0.00 3.97
7083 10901 4.772624 CCGATGGAGTATTCTTCTATGGGA 59.227 45.833 0.00 0.00 0.00 4.37
7084 10902 4.081420 CCCGATGGAGTATTCTTCTATGGG 60.081 50.000 0.00 0.00 0.00 4.00
7085 10903 4.528596 ACCCGATGGAGTATTCTTCTATGG 59.471 45.833 0.00 0.00 34.81 2.74
7086 10904 5.478679 AGACCCGATGGAGTATTCTTCTATG 59.521 44.000 0.00 0.00 34.81 2.23
7087 10905 5.646215 AGACCCGATGGAGTATTCTTCTAT 58.354 41.667 0.00 0.00 34.81 1.98
7088 10906 5.063017 AGACCCGATGGAGTATTCTTCTA 57.937 43.478 0.00 0.00 34.81 2.10
7089 10907 3.917300 AGACCCGATGGAGTATTCTTCT 58.083 45.455 0.00 0.00 34.81 2.85
7090 10908 4.674281 AAGACCCGATGGAGTATTCTTC 57.326 45.455 0.00 0.00 34.81 2.87
7091 10909 5.661759 ACTAAAGACCCGATGGAGTATTCTT 59.338 40.000 0.00 0.00 34.81 2.52
7092 10910 5.069251 CACTAAAGACCCGATGGAGTATTCT 59.931 44.000 0.00 0.00 34.81 2.40
7093 10911 5.163437 ACACTAAAGACCCGATGGAGTATTC 60.163 44.000 0.00 0.00 34.81 1.75
7094 10912 4.715297 ACACTAAAGACCCGATGGAGTATT 59.285 41.667 0.00 0.00 34.81 1.89
7095 10913 4.099573 CACACTAAAGACCCGATGGAGTAT 59.900 45.833 0.00 0.00 34.81 2.12
7096 10914 3.446161 CACACTAAAGACCCGATGGAGTA 59.554 47.826 0.00 0.00 34.81 2.59
7097 10915 2.233922 CACACTAAAGACCCGATGGAGT 59.766 50.000 0.00 0.00 34.81 3.85
7098 10916 2.893637 CACACTAAAGACCCGATGGAG 58.106 52.381 0.00 0.00 34.81 3.86
7099 10917 1.066430 GCACACTAAAGACCCGATGGA 60.066 52.381 0.00 0.00 34.81 3.41
7100 10918 1.369625 GCACACTAAAGACCCGATGG 58.630 55.000 0.00 0.00 37.80 3.51
7101 10919 0.999406 CGCACACTAAAGACCCGATG 59.001 55.000 0.00 0.00 0.00 3.84
7102 10920 0.739813 GCGCACACTAAAGACCCGAT 60.740 55.000 0.30 0.00 0.00 4.18
7103 10921 1.373748 GCGCACACTAAAGACCCGA 60.374 57.895 0.30 0.00 0.00 5.14
7104 10922 2.388232 GGCGCACACTAAAGACCCG 61.388 63.158 10.83 0.00 0.00 5.28
7105 10923 1.003718 AGGCGCACACTAAAGACCC 60.004 57.895 10.83 0.00 0.00 4.46
7106 10924 4.695560 AGGCGCACACTAAAGACC 57.304 55.556 10.83 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.