Multiple sequence alignment - TraesCS2B01G332600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G332600 chr2B 100.000 5466 0 0 1 5466 475755709 475750244 0.000000e+00 10094.0
1 TraesCS2B01G332600 chr2B 99.234 653 5 0 2818 3470 601190201 601190853 0.000000e+00 1179.0
2 TraesCS2B01G332600 chr2B 83.651 893 114 19 1 864 193406270 193405381 0.000000e+00 811.0
3 TraesCS2B01G332600 chr2A 96.638 1993 58 7 3467 5452 538411302 538409312 0.000000e+00 3301.0
4 TraesCS2B01G332600 chr2A 93.047 1697 55 15 994 2665 538432484 538430826 0.000000e+00 2422.0
5 TraesCS2B01G332600 chr2A 99.077 650 6 0 2818 3467 470644871 470644222 0.000000e+00 1168.0
6 TraesCS2B01G332600 chr2A 94.643 112 6 0 2661 2772 538417034 538416923 2.020000e-39 174.0
7 TraesCS2B01G332600 chr2A 94.444 108 6 0 4591 4698 57867960 57868067 3.390000e-37 167.0
8 TraesCS2B01G332600 chr2A 98.182 55 0 1 2767 2820 538411345 538411291 1.620000e-15 95.3
9 TraesCS2B01G332600 chr6B 99.234 653 5 0 2818 3470 16315369 16314717 0.000000e+00 1179.0
10 TraesCS2B01G332600 chr5B 99.231 650 5 0 2818 3467 166383724 166383075 0.000000e+00 1173.0
11 TraesCS2B01G332600 chr5B 98.780 656 6 2 2814 3469 53661290 53661943 0.000000e+00 1166.0
12 TraesCS2B01G332600 chr5B 83.922 877 121 18 1 864 214343211 214342342 0.000000e+00 821.0
13 TraesCS2B01G332600 chr5B 83.164 885 112 20 4 862 125733227 125732354 0.000000e+00 774.0
14 TraesCS2B01G332600 chr7B 99.080 652 6 0 2817 3468 148947213 148947864 0.000000e+00 1171.0
15 TraesCS2B01G332600 chr7B 81.839 892 126 23 1 862 75019485 75020370 0.000000e+00 717.0
16 TraesCS2B01G332600 chr6A 99.230 649 5 0 2818 3466 2728518 2729166 0.000000e+00 1171.0
17 TraesCS2B01G332600 chr6A 93.103 116 6 2 4584 4697 598168980 598169095 9.420000e-38 169.0
18 TraesCS2B01G332600 chr4B 99.077 650 6 0 2817 3466 636745336 636744687 0.000000e+00 1168.0
19 TraesCS2B01G332600 chr1A 99.077 650 6 0 2818 3467 242003867 242004516 0.000000e+00 1168.0
20 TraesCS2B01G332600 chr1A 74.852 338 70 10 1683 2014 490019168 490019496 7.380000e-29 139.0
21 TraesCS2B01G332600 chr1A 75.920 299 57 10 1694 1986 490109237 490109526 7.380000e-29 139.0
22 TraesCS2B01G332600 chr2D 87.021 809 89 13 3 798 590079000 590078195 0.000000e+00 898.0
23 TraesCS2B01G332600 chr6D 86.352 806 93 14 5 798 394287733 394286933 0.000000e+00 863.0
24 TraesCS2B01G332600 chr7A 84.246 895 96 24 1 864 689233832 689232952 0.000000e+00 830.0
25 TraesCS2B01G332600 chr7A 95.370 108 5 0 4591 4698 642381744 642381637 7.280000e-39 172.0
26 TraesCS2B01G332600 chr7A 95.192 104 5 0 4591 4694 688882402 688882505 1.220000e-36 165.0
27 TraesCS2B01G332600 chr1B 83.744 892 109 23 4 864 287055419 287054533 0.000000e+00 811.0
28 TraesCS2B01G332600 chr1B 83.469 859 106 22 36 864 472908565 472907713 0.000000e+00 767.0
29 TraesCS2B01G332600 chr1B 76.667 570 112 14 1612 2172 525894624 525895181 4.140000e-76 296.0
30 TraesCS2B01G332600 chr1B 75.484 310 61 10 1683 1986 526428853 526429153 2.660000e-28 137.0
31 TraesCS2B01G332600 chr3A 94.444 108 6 0 4591 4698 512321563 512321456 3.390000e-37 167.0
32 TraesCS2B01G332600 chr4D 93.694 111 6 1 4591 4700 468903086 468902976 1.220000e-36 165.0
33 TraesCS2B01G332600 chr4D 93.519 108 7 0 4591 4698 434456264 434456371 1.580000e-35 161.0
34 TraesCS2B01G332600 chr7D 94.340 106 5 1 4591 4696 510440686 510440790 1.580000e-35 161.0
35 TraesCS2B01G332600 chr1D 76.344 279 51 10 1683 1955 395877484 395877753 9.550000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G332600 chr2B 475750244 475755709 5465 True 10094.00 10094 100.000 1 5466 1 chr2B.!!$R2 5465
1 TraesCS2B01G332600 chr2B 601190201 601190853 652 False 1179.00 1179 99.234 2818 3470 1 chr2B.!!$F1 652
2 TraesCS2B01G332600 chr2B 193405381 193406270 889 True 811.00 811 83.651 1 864 1 chr2B.!!$R1 863
3 TraesCS2B01G332600 chr2A 538430826 538432484 1658 True 2422.00 2422 93.047 994 2665 1 chr2A.!!$R3 1671
4 TraesCS2B01G332600 chr2A 538409312 538411345 2033 True 1698.15 3301 97.410 2767 5452 2 chr2A.!!$R4 2685
5 TraesCS2B01G332600 chr2A 470644222 470644871 649 True 1168.00 1168 99.077 2818 3467 1 chr2A.!!$R1 649
6 TraesCS2B01G332600 chr6B 16314717 16315369 652 True 1179.00 1179 99.234 2818 3470 1 chr6B.!!$R1 652
7 TraesCS2B01G332600 chr5B 166383075 166383724 649 True 1173.00 1173 99.231 2818 3467 1 chr5B.!!$R2 649
8 TraesCS2B01G332600 chr5B 53661290 53661943 653 False 1166.00 1166 98.780 2814 3469 1 chr5B.!!$F1 655
9 TraesCS2B01G332600 chr5B 214342342 214343211 869 True 821.00 821 83.922 1 864 1 chr5B.!!$R3 863
10 TraesCS2B01G332600 chr5B 125732354 125733227 873 True 774.00 774 83.164 4 862 1 chr5B.!!$R1 858
11 TraesCS2B01G332600 chr7B 148947213 148947864 651 False 1171.00 1171 99.080 2817 3468 1 chr7B.!!$F2 651
12 TraesCS2B01G332600 chr7B 75019485 75020370 885 False 717.00 717 81.839 1 862 1 chr7B.!!$F1 861
13 TraesCS2B01G332600 chr6A 2728518 2729166 648 False 1171.00 1171 99.230 2818 3466 1 chr6A.!!$F1 648
14 TraesCS2B01G332600 chr4B 636744687 636745336 649 True 1168.00 1168 99.077 2817 3466 1 chr4B.!!$R1 649
15 TraesCS2B01G332600 chr1A 242003867 242004516 649 False 1168.00 1168 99.077 2818 3467 1 chr1A.!!$F1 649
16 TraesCS2B01G332600 chr2D 590078195 590079000 805 True 898.00 898 87.021 3 798 1 chr2D.!!$R1 795
17 TraesCS2B01G332600 chr6D 394286933 394287733 800 True 863.00 863 86.352 5 798 1 chr6D.!!$R1 793
18 TraesCS2B01G332600 chr7A 689232952 689233832 880 True 830.00 830 84.246 1 864 1 chr7A.!!$R2 863
19 TraesCS2B01G332600 chr1B 287054533 287055419 886 True 811.00 811 83.744 4 864 1 chr1B.!!$R1 860
20 TraesCS2B01G332600 chr1B 472907713 472908565 852 True 767.00 767 83.469 36 864 1 chr1B.!!$R2 828
21 TraesCS2B01G332600 chr1B 525894624 525895181 557 False 296.00 296 76.667 1612 2172 1 chr1B.!!$F1 560

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
931 959 0.025001 CGCTACGAAATGCTTGGACG 59.975 55.0 0.00 0.0 0.00 4.79 F
944 972 0.036164 TTGGACGATGGTTGGACAGG 59.964 55.0 0.00 0.0 0.00 4.00 F
1050 1078 0.108233 CCTTCTGTCAGAGCAGAGCC 60.108 60.0 2.12 0.0 45.03 4.70 F
2456 2514 0.179215 CTCGCACATTTCGGTTCTGC 60.179 55.0 0.00 0.0 0.00 4.26 F
2460 2518 0.240945 CACATTTCGGTTCTGCCACC 59.759 55.0 0.00 0.0 36.97 4.61 F
3649 3707 0.491371 ATCCCCAAAAGCCCCAAGAA 59.509 50.0 0.00 0.0 0.00 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2449 2507 0.035343 GTAGGAAGGGTGGCAGAACC 60.035 60.0 0.0 0.0 39.71 3.62 R
2511 2569 0.040058 ACCATGATTTCAGGCAGGCA 59.960 50.0 0.0 0.0 0.00 4.75 R
2752 2810 1.589414 AGCCTACTTCCTCCATTGCT 58.411 50.0 0.0 0.0 0.00 3.91 R
3565 3623 0.991146 TTAGCTGCCTGGGTCATTCA 59.009 50.0 0.0 0.0 0.00 2.57 R
3912 3970 2.547855 GCGGTAGACATATCATGTGCCA 60.548 50.0 0.0 0.0 45.03 4.92 R
5161 5225 2.240493 ACAGCAGTCAGTACCACAAC 57.760 50.0 0.0 0.0 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.998099 TTGGTTCACGCATGAAATTGA 57.002 38.095 0.00 0.00 46.40 2.57
26 27 5.276270 GTTCACGCATGAAATTGATGCTAT 58.724 37.500 14.85 1.03 46.40 2.97
29 30 5.066246 TCACGCATGAAATTGATGCTATGAA 59.934 36.000 14.85 2.58 43.45 2.57
49 51 5.601662 TGAATAGCGAACTCCCAAGATTAG 58.398 41.667 0.00 0.00 0.00 1.73
101 104 4.485163 ACTGACAAGACTTGCAACAAAAC 58.515 39.130 15.24 0.00 0.00 2.43
112 116 8.831550 AGACTTGCAACAAAACAAAACTTAAAA 58.168 25.926 0.00 0.00 0.00 1.52
245 257 6.151817 GGCTTGATATCTCCTTTTTGTTGACT 59.848 38.462 3.98 0.00 0.00 3.41
284 300 1.716028 ATCCCGCACCTATTTCCCCC 61.716 60.000 0.00 0.00 0.00 5.40
285 301 2.383601 CCCGCACCTATTTCCCCCT 61.384 63.158 0.00 0.00 0.00 4.79
328 344 5.740290 ACCCACGAGAGAAAGATTTTCTA 57.260 39.130 4.19 0.00 0.00 2.10
383 402 5.964958 TCAAATCCATCTTTTGACCAGAC 57.035 39.130 0.00 0.00 37.97 3.51
431 454 9.948964 AACACTTATAATAAAAAGAGGTACGGT 57.051 29.630 0.00 0.00 0.00 4.83
438 461 4.618920 AAAAAGAGGTACGGTGATGAGT 57.381 40.909 0.00 0.00 0.00 3.41
440 463 5.733620 AAAAGAGGTACGGTGATGAGTTA 57.266 39.130 0.00 0.00 0.00 2.24
447 470 6.522054 AGGTACGGTGATGAGTTATTAATGG 58.478 40.000 0.00 0.00 0.00 3.16
565 591 5.241403 TGTGTCCAAATAACATCCTGACT 57.759 39.130 0.00 0.00 0.00 3.41
606 632 5.296151 AGAATCAGTTGTCCTGTTGAAGA 57.704 39.130 0.00 0.00 42.19 2.87
647 673 5.280317 GGGTTGCCCCGATAATTAAGATAGA 60.280 44.000 0.00 0.00 42.41 1.98
648 674 6.415573 GGTTGCCCCGATAATTAAGATAGAT 58.584 40.000 0.00 0.00 0.00 1.98
674 701 3.056465 TCAGACAAAAACTTTGGGCGTTT 60.056 39.130 4.30 0.00 36.22 3.60
688 715 3.244630 TGGGCGTTTAATGACTACACCTT 60.245 43.478 0.00 0.00 0.00 3.50
695 722 8.395633 GCGTTTAATGACTACACCTTATGAATT 58.604 33.333 0.00 0.00 0.00 2.17
707 735 7.006509 ACACCTTATGAATTCCAAGGATATGG 58.993 38.462 29.28 19.96 41.18 2.74
719 747 5.014755 TCCAAGGATATGGTTTGTGTTACCT 59.985 40.000 0.00 0.00 41.46 3.08
731 759 7.067251 TGGTTTGTGTTACCTTACTAAACCTTG 59.933 37.037 14.66 0.00 41.35 3.61
747 775 1.066143 CCTTGCTATCACCGGTGTTCT 60.066 52.381 32.74 20.63 0.00 3.01
749 777 1.262417 TGCTATCACCGGTGTTCTGA 58.738 50.000 32.74 15.05 0.00 3.27
754 782 5.057149 GCTATCACCGGTGTTCTGAATAAT 58.943 41.667 32.74 18.08 0.00 1.28
759 787 6.469410 TCACCGGTGTTCTGAATAATACTTT 58.531 36.000 32.74 0.00 0.00 2.66
792 820 1.192146 TTCTAGCCTCACCGGTGCTT 61.192 55.000 30.25 16.12 36.57 3.91
798 826 0.036010 CCTCACCGGTGCTTGATCTT 60.036 55.000 30.25 0.00 0.00 2.40
799 827 1.081892 CTCACCGGTGCTTGATCTTG 58.918 55.000 30.25 1.91 0.00 3.02
800 828 0.955428 TCACCGGTGCTTGATCTTGC 60.955 55.000 30.25 0.00 0.00 4.01
801 829 1.073025 ACCGGTGCTTGATCTTGCA 59.927 52.632 6.12 8.69 36.79 4.08
802 830 0.537143 ACCGGTGCTTGATCTTGCAA 60.537 50.000 6.12 0.00 41.10 4.08
803 831 0.169672 CCGGTGCTTGATCTTGCAAG 59.830 55.000 20.81 20.81 46.18 4.01
804 832 1.159285 CGGTGCTTGATCTTGCAAGA 58.841 50.000 30.23 30.23 46.31 3.02
805 833 1.536766 CGGTGCTTGATCTTGCAAGAA 59.463 47.619 31.55 14.87 46.31 2.52
806 834 2.163010 CGGTGCTTGATCTTGCAAGAAT 59.837 45.455 31.55 19.78 46.31 2.40
807 835 3.508762 GGTGCTTGATCTTGCAAGAATG 58.491 45.455 31.55 20.90 46.31 2.67
808 836 3.192001 GGTGCTTGATCTTGCAAGAATGA 59.808 43.478 31.55 18.40 46.31 2.57
809 837 4.321452 GGTGCTTGATCTTGCAAGAATGAA 60.321 41.667 31.55 21.35 46.31 2.57
810 838 4.857588 GTGCTTGATCTTGCAAGAATGAAG 59.142 41.667 31.55 28.22 46.31 3.02
811 839 4.763279 TGCTTGATCTTGCAAGAATGAAGA 59.237 37.500 31.55 17.96 46.31 2.87
812 840 5.417894 TGCTTGATCTTGCAAGAATGAAGAT 59.582 36.000 31.55 14.45 46.31 2.40
813 841 5.972382 GCTTGATCTTGCAAGAATGAAGATC 59.028 40.000 31.55 21.91 46.31 2.75
814 842 6.404403 GCTTGATCTTGCAAGAATGAAGATCA 60.404 38.462 31.55 24.04 46.31 2.92
815 843 6.432607 TGATCTTGCAAGAATGAAGATCAC 57.567 37.500 31.55 13.11 44.33 3.06
816 844 4.934075 TCTTGCAAGAATGAAGATCACG 57.066 40.909 26.61 0.00 30.73 4.35
817 845 3.686241 TCTTGCAAGAATGAAGATCACGG 59.314 43.478 26.61 0.00 30.73 4.94
818 846 3.333029 TGCAAGAATGAAGATCACGGA 57.667 42.857 0.00 0.00 0.00 4.69
819 847 3.002791 TGCAAGAATGAAGATCACGGAC 58.997 45.455 0.00 0.00 0.00 4.79
820 848 2.352960 GCAAGAATGAAGATCACGGACC 59.647 50.000 0.00 0.00 0.00 4.46
821 849 3.599343 CAAGAATGAAGATCACGGACCA 58.401 45.455 0.00 0.00 0.00 4.02
822 850 3.533606 AGAATGAAGATCACGGACCAG 57.466 47.619 0.00 0.00 0.00 4.00
823 851 3.099905 AGAATGAAGATCACGGACCAGA 58.900 45.455 0.00 0.00 0.00 3.86
824 852 2.969628 ATGAAGATCACGGACCAGAC 57.030 50.000 0.00 0.00 0.00 3.51
825 853 1.627864 TGAAGATCACGGACCAGACA 58.372 50.000 0.00 0.00 0.00 3.41
826 854 1.967779 TGAAGATCACGGACCAGACAA 59.032 47.619 0.00 0.00 0.00 3.18
827 855 2.367241 TGAAGATCACGGACCAGACAAA 59.633 45.455 0.00 0.00 0.00 2.83
828 856 3.181459 TGAAGATCACGGACCAGACAAAA 60.181 43.478 0.00 0.00 0.00 2.44
829 857 3.045601 AGATCACGGACCAGACAAAAG 57.954 47.619 0.00 0.00 0.00 2.27
830 858 2.632996 AGATCACGGACCAGACAAAAGA 59.367 45.455 0.00 0.00 0.00 2.52
831 859 3.261897 AGATCACGGACCAGACAAAAGAT 59.738 43.478 0.00 0.00 0.00 2.40
832 860 4.466370 AGATCACGGACCAGACAAAAGATA 59.534 41.667 0.00 0.00 0.00 1.98
833 861 3.921677 TCACGGACCAGACAAAAGATAC 58.078 45.455 0.00 0.00 0.00 2.24
834 862 3.576982 TCACGGACCAGACAAAAGATACT 59.423 43.478 0.00 0.00 0.00 2.12
835 863 4.039973 TCACGGACCAGACAAAAGATACTT 59.960 41.667 0.00 0.00 0.00 2.24
836 864 4.389077 CACGGACCAGACAAAAGATACTTC 59.611 45.833 0.00 0.00 0.00 3.01
837 865 4.039973 ACGGACCAGACAAAAGATACTTCA 59.960 41.667 0.00 0.00 0.00 3.02
838 866 5.178797 CGGACCAGACAAAAGATACTTCAT 58.821 41.667 0.00 0.00 0.00 2.57
839 867 5.063944 CGGACCAGACAAAAGATACTTCATG 59.936 44.000 0.00 0.00 0.00 3.07
840 868 6.173339 GGACCAGACAAAAGATACTTCATGA 58.827 40.000 0.00 0.00 0.00 3.07
841 869 6.655003 GGACCAGACAAAAGATACTTCATGAA 59.345 38.462 8.12 8.12 0.00 2.57
842 870 7.148340 GGACCAGACAAAAGATACTTCATGAAG 60.148 40.741 29.74 29.74 43.79 3.02
843 871 6.150140 ACCAGACAAAAGATACTTCATGAAGC 59.850 38.462 30.95 17.31 41.99 3.86
844 872 6.149973 CCAGACAAAAGATACTTCATGAAGCA 59.850 38.462 30.95 21.65 41.99 3.91
845 873 7.308770 CCAGACAAAAGATACTTCATGAAGCAA 60.309 37.037 30.95 21.26 41.99 3.91
846 874 8.242053 CAGACAAAAGATACTTCATGAAGCAAT 58.758 33.333 30.95 24.44 41.99 3.56
847 875 8.800332 AGACAAAAGATACTTCATGAAGCAATT 58.200 29.630 30.95 18.95 41.99 2.32
848 876 9.415544 GACAAAAGATACTTCATGAAGCAATTT 57.584 29.630 30.95 22.65 41.99 1.82
849 877 9.768662 ACAAAAGATACTTCATGAAGCAATTTT 57.231 25.926 30.95 25.88 41.99 1.82
866 894 8.393395 AGCAATTTTATTTTACACATACAGCG 57.607 30.769 0.00 0.00 0.00 5.18
867 895 7.009174 AGCAATTTTATTTTACACATACAGCGC 59.991 33.333 0.00 0.00 0.00 5.92
868 896 7.009174 GCAATTTTATTTTACACATACAGCGCT 59.991 33.333 2.64 2.64 0.00 5.92
869 897 8.523464 CAATTTTATTTTACACATACAGCGCTC 58.477 33.333 7.13 0.00 0.00 5.03
870 898 5.728351 TTATTTTACACATACAGCGCTCC 57.272 39.130 7.13 0.00 0.00 4.70
871 899 3.328382 TTTTACACATACAGCGCTCCT 57.672 42.857 7.13 0.00 0.00 3.69
872 900 2.579207 TTACACATACAGCGCTCCTC 57.421 50.000 7.13 0.00 0.00 3.71
873 901 0.380733 TACACATACAGCGCTCCTCG 59.619 55.000 7.13 0.00 42.12 4.63
874 902 1.139734 CACATACAGCGCTCCTCGT 59.860 57.895 7.13 4.86 41.07 4.18
875 903 0.458543 CACATACAGCGCTCCTCGTT 60.459 55.000 7.13 0.00 41.07 3.85
876 904 0.246635 ACATACAGCGCTCCTCGTTT 59.753 50.000 7.13 0.00 41.07 3.60
877 905 0.924090 CATACAGCGCTCCTCGTTTC 59.076 55.000 7.13 0.00 41.07 2.78
878 906 0.179108 ATACAGCGCTCCTCGTTTCC 60.179 55.000 7.13 0.00 41.07 3.13
879 907 1.529152 TACAGCGCTCCTCGTTTCCA 61.529 55.000 7.13 0.00 41.07 3.53
880 908 1.667830 CAGCGCTCCTCGTTTCCAA 60.668 57.895 7.13 0.00 41.07 3.53
881 909 1.374758 AGCGCTCCTCGTTTCCAAG 60.375 57.895 2.64 0.00 41.07 3.61
882 910 2.391389 GCGCTCCTCGTTTCCAAGG 61.391 63.158 0.00 0.00 41.07 3.61
883 911 1.292223 CGCTCCTCGTTTCCAAGGA 59.708 57.895 0.00 0.00 39.38 3.36
888 916 3.955650 TCCTCGTTTCCAAGGAGTTAG 57.044 47.619 5.68 0.00 40.77 2.34
889 917 3.503365 TCCTCGTTTCCAAGGAGTTAGA 58.497 45.455 5.68 0.00 40.77 2.10
890 918 3.257624 TCCTCGTTTCCAAGGAGTTAGAC 59.742 47.826 5.68 0.00 40.77 2.59
891 919 3.243336 CTCGTTTCCAAGGAGTTAGACG 58.757 50.000 0.00 0.00 38.31 4.18
892 920 2.029649 TCGTTTCCAAGGAGTTAGACGG 60.030 50.000 0.00 0.00 0.00 4.79
893 921 2.029649 CGTTTCCAAGGAGTTAGACGGA 60.030 50.000 0.00 0.00 0.00 4.69
894 922 3.324117 GTTTCCAAGGAGTTAGACGGAC 58.676 50.000 0.00 0.00 0.00 4.79
895 923 2.297698 TCCAAGGAGTTAGACGGACA 57.702 50.000 0.00 0.00 0.00 4.02
896 924 2.600790 TCCAAGGAGTTAGACGGACAA 58.399 47.619 0.00 0.00 0.00 3.18
897 925 2.967201 TCCAAGGAGTTAGACGGACAAA 59.033 45.455 0.00 0.00 0.00 2.83
898 926 3.581332 TCCAAGGAGTTAGACGGACAAAT 59.419 43.478 0.00 0.00 0.00 2.32
899 927 4.041198 TCCAAGGAGTTAGACGGACAAATT 59.959 41.667 0.00 0.00 0.00 1.82
900 928 5.246656 TCCAAGGAGTTAGACGGACAAATTA 59.753 40.000 0.00 0.00 0.00 1.40
901 929 5.935789 CCAAGGAGTTAGACGGACAAATTAA 59.064 40.000 0.00 0.00 0.00 1.40
902 930 6.428771 CCAAGGAGTTAGACGGACAAATTAAA 59.571 38.462 0.00 0.00 0.00 1.52
903 931 7.120726 CCAAGGAGTTAGACGGACAAATTAAAT 59.879 37.037 0.00 0.00 0.00 1.40
904 932 8.512138 CAAGGAGTTAGACGGACAAATTAAATT 58.488 33.333 0.00 0.00 0.00 1.82
905 933 8.631480 AGGAGTTAGACGGACAAATTAAATTT 57.369 30.769 0.00 0.00 0.00 1.82
906 934 9.074576 AGGAGTTAGACGGACAAATTAAATTTT 57.925 29.630 0.00 0.00 0.00 1.82
907 935 9.338291 GGAGTTAGACGGACAAATTAAATTTTC 57.662 33.333 0.00 0.00 0.00 2.29
908 936 9.338291 GAGTTAGACGGACAAATTAAATTTTCC 57.662 33.333 0.00 0.00 0.00 3.13
909 937 8.019094 AGTTAGACGGACAAATTAAATTTTCCG 58.981 33.333 23.04 23.04 46.30 4.30
910 938 5.158494 AGACGGACAAATTAAATTTTCCGC 58.842 37.500 24.08 18.08 45.66 5.54
911 939 3.915569 ACGGACAAATTAAATTTTCCGCG 59.084 39.130 24.08 0.00 45.66 6.46
912 940 3.241520 CGGACAAATTAAATTTTCCGCGC 60.242 43.478 15.75 0.00 41.32 6.86
913 941 3.241520 GGACAAATTAAATTTTCCGCGCG 60.242 43.478 25.67 25.67 0.00 6.86
914 942 2.091432 ACAAATTAAATTTTCCGCGCGC 59.909 40.909 27.36 23.91 0.00 6.86
915 943 2.271821 AATTAAATTTTCCGCGCGCT 57.728 40.000 30.48 10.25 0.00 5.92
916 944 3.408288 AATTAAATTTTCCGCGCGCTA 57.592 38.095 30.48 14.71 0.00 4.26
917 945 2.162371 TTAAATTTTCCGCGCGCTAC 57.838 45.000 30.48 0.00 0.00 3.58
928 956 4.670606 GCGCTACGAAATGCTTGG 57.329 55.556 0.00 0.00 0.00 3.61
929 957 2.086510 GCGCTACGAAATGCTTGGA 58.913 52.632 0.00 0.00 0.00 3.53
930 958 0.247695 GCGCTACGAAATGCTTGGAC 60.248 55.000 0.00 0.00 0.00 4.02
931 959 0.025001 CGCTACGAAATGCTTGGACG 59.975 55.000 0.00 0.00 0.00 4.79
932 960 1.355971 GCTACGAAATGCTTGGACGA 58.644 50.000 0.00 0.00 0.00 4.20
933 961 1.933853 GCTACGAAATGCTTGGACGAT 59.066 47.619 0.00 0.00 0.00 3.73
934 962 2.285834 GCTACGAAATGCTTGGACGATG 60.286 50.000 0.00 0.00 0.00 3.84
935 963 1.086696 ACGAAATGCTTGGACGATGG 58.913 50.000 0.00 0.00 0.00 3.51
936 964 1.086696 CGAAATGCTTGGACGATGGT 58.913 50.000 0.00 0.00 0.00 3.55
937 965 1.468520 CGAAATGCTTGGACGATGGTT 59.531 47.619 0.00 0.00 0.00 3.67
938 966 2.728846 CGAAATGCTTGGACGATGGTTG 60.729 50.000 0.00 0.00 0.00 3.77
939 967 1.176527 AATGCTTGGACGATGGTTGG 58.823 50.000 0.00 0.00 0.00 3.77
940 968 0.327924 ATGCTTGGACGATGGTTGGA 59.672 50.000 0.00 0.00 0.00 3.53
941 969 0.605319 TGCTTGGACGATGGTTGGAC 60.605 55.000 0.00 0.00 0.00 4.02
942 970 0.605319 GCTTGGACGATGGTTGGACA 60.605 55.000 0.00 0.00 0.00 4.02
943 971 1.442769 CTTGGACGATGGTTGGACAG 58.557 55.000 0.00 0.00 0.00 3.51
944 972 0.036164 TTGGACGATGGTTGGACAGG 59.964 55.000 0.00 0.00 0.00 4.00
945 973 0.834261 TGGACGATGGTTGGACAGGA 60.834 55.000 0.00 0.00 0.00 3.86
946 974 0.391263 GGACGATGGTTGGACAGGAC 60.391 60.000 0.00 0.00 0.00 3.85
947 975 0.608640 GACGATGGTTGGACAGGACT 59.391 55.000 0.00 0.00 0.00 3.85
948 976 0.321671 ACGATGGTTGGACAGGACTG 59.678 55.000 0.00 0.00 0.00 3.51
949 977 0.391661 CGATGGTTGGACAGGACTGG 60.392 60.000 4.14 0.00 34.19 4.00
950 978 0.678048 GATGGTTGGACAGGACTGGC 60.678 60.000 4.14 0.00 38.06 4.85
956 984 2.262915 GACAGGACTGGCCGAGTG 59.737 66.667 11.89 0.00 43.43 3.51
957 985 2.203640 ACAGGACTGGCCGAGTGA 60.204 61.111 11.89 0.00 43.43 3.41
958 986 2.262915 CAGGACTGGCCGAGTGAC 59.737 66.667 11.89 5.78 43.43 3.67
959 987 2.203640 AGGACTGGCCGAGTGACA 60.204 61.111 11.89 0.00 43.43 3.58
960 988 2.048127 GGACTGGCCGAGTGACAC 60.048 66.667 11.89 0.00 33.83 3.67
961 989 2.430921 GACTGGCCGAGTGACACG 60.431 66.667 11.89 0.00 33.83 4.49
962 990 4.664677 ACTGGCCGAGTGACACGC 62.665 66.667 7.00 0.00 31.75 5.34
963 991 4.363990 CTGGCCGAGTGACACGCT 62.364 66.667 7.75 0.00 0.00 5.07
964 992 2.986979 TGGCCGAGTGACACGCTA 60.987 61.111 7.75 0.00 0.00 4.26
965 993 2.506438 GGCCGAGTGACACGCTAC 60.506 66.667 7.75 0.00 0.00 3.58
966 994 2.257371 GCCGAGTGACACGCTACA 59.743 61.111 7.75 0.00 0.00 2.74
967 995 1.801913 GCCGAGTGACACGCTACAG 60.802 63.158 7.75 0.00 0.00 2.74
968 996 1.579932 CCGAGTGACACGCTACAGT 59.420 57.895 7.75 0.00 0.00 3.55
969 997 0.454620 CCGAGTGACACGCTACAGTC 60.455 60.000 7.75 0.00 34.36 3.51
970 998 0.517755 CGAGTGACACGCTACAGTCT 59.482 55.000 7.75 0.00 35.20 3.24
971 999 1.726251 CGAGTGACACGCTACAGTCTG 60.726 57.143 7.75 0.00 35.20 3.51
972 1000 1.535896 GAGTGACACGCTACAGTCTGA 59.464 52.381 6.91 0.00 35.81 3.27
973 1001 2.162608 GAGTGACACGCTACAGTCTGAT 59.837 50.000 6.91 0.00 35.81 2.90
974 1002 3.344515 AGTGACACGCTACAGTCTGATA 58.655 45.455 6.91 0.00 35.81 2.15
975 1003 3.756963 AGTGACACGCTACAGTCTGATAA 59.243 43.478 6.91 0.00 35.81 1.75
976 1004 4.217767 AGTGACACGCTACAGTCTGATAAA 59.782 41.667 6.91 0.00 35.81 1.40
977 1005 4.323868 GTGACACGCTACAGTCTGATAAAC 59.676 45.833 6.91 0.00 35.81 2.01
978 1006 3.846360 ACACGCTACAGTCTGATAAACC 58.154 45.455 6.91 0.00 0.00 3.27
979 1007 3.257375 ACACGCTACAGTCTGATAAACCA 59.743 43.478 6.91 0.00 0.00 3.67
980 1008 4.081642 ACACGCTACAGTCTGATAAACCAT 60.082 41.667 6.91 0.00 0.00 3.55
981 1009 4.504461 CACGCTACAGTCTGATAAACCATC 59.496 45.833 6.91 0.00 0.00 3.51
982 1010 4.051922 CGCTACAGTCTGATAAACCATCC 58.948 47.826 6.91 0.00 32.09 3.51
983 1011 4.441495 CGCTACAGTCTGATAAACCATCCA 60.441 45.833 6.91 0.00 32.09 3.41
984 1012 5.053145 GCTACAGTCTGATAAACCATCCAG 58.947 45.833 6.91 0.00 32.09 3.86
985 1013 4.494091 ACAGTCTGATAAACCATCCAGG 57.506 45.455 6.91 0.00 45.67 4.45
1043 1071 4.314121 CTGTTCCTTTCCTTCTGTCAGAG 58.686 47.826 2.12 0.00 0.00 3.35
1050 1078 0.108233 CCTTCTGTCAGAGCAGAGCC 60.108 60.000 2.12 0.00 45.03 4.70
1069 1097 4.491409 GCGCCCTTCCCTTCCCTC 62.491 72.222 0.00 0.00 0.00 4.30
1070 1098 3.798511 CGCCCTTCCCTTCCCTCC 61.799 72.222 0.00 0.00 0.00 4.30
1071 1099 3.421386 GCCCTTCCCTTCCCTCCC 61.421 72.222 0.00 0.00 0.00 4.30
1072 1100 2.696504 CCCTTCCCTTCCCTCCCC 60.697 72.222 0.00 0.00 0.00 4.81
1073 1101 2.461637 CCTTCCCTTCCCTCCCCT 59.538 66.667 0.00 0.00 0.00 4.79
1074 1102 1.230314 CCTTCCCTTCCCTCCCCTT 60.230 63.158 0.00 0.00 0.00 3.95
1075 1103 1.282653 CCTTCCCTTCCCTCCCCTTC 61.283 65.000 0.00 0.00 0.00 3.46
1076 1104 1.230182 TTCCCTTCCCTCCCCTTCC 60.230 63.158 0.00 0.00 0.00 3.46
1077 1105 2.696504 CCCTTCCCTCCCCTTCCC 60.697 72.222 0.00 0.00 0.00 3.97
1078 1106 2.461637 CCTTCCCTCCCCTTCCCT 59.538 66.667 0.00 0.00 0.00 4.20
1132 1160 1.901833 CTCCCCCAAAATCACCCAAAG 59.098 52.381 0.00 0.00 0.00 2.77
1159 1187 2.498726 GCCCGCTCTCCTCTTCAG 59.501 66.667 0.00 0.00 0.00 3.02
1337 1377 0.542938 CCTCCCTGGGCGATGATCTA 60.543 60.000 8.22 0.00 0.00 1.98
1382 1422 2.202492 CCGAGACGCGTCCTTCTG 60.202 66.667 34.08 18.86 38.67 3.02
1424 1464 1.215679 ACTCTCTTCTCCCTCCCCGA 61.216 60.000 0.00 0.00 0.00 5.14
1481 1521 0.733909 GGGTACACCGACAACTACGC 60.734 60.000 0.00 0.00 36.71 4.42
1486 1526 3.179265 CCGACAACTACGCCAGCG 61.179 66.667 11.05 11.05 46.03 5.18
1609 1661 2.743928 CCAAGGAGGAGCACGTGC 60.744 66.667 32.79 32.79 41.22 5.34
1765 1820 3.131196 GAGCTCATCGAGGCGCTCA 62.131 63.158 30.59 0.00 46.06 4.26
1767 1822 2.236382 GCTCATCGAGGCGCTCAAG 61.236 63.158 7.64 0.00 0.00 3.02
1769 1824 2.009424 CTCATCGAGGCGCTCAAGGA 62.009 60.000 7.64 0.00 0.00 3.36
1770 1825 1.880340 CATCGAGGCGCTCAAGGAC 60.880 63.158 7.64 0.00 0.00 3.85
1772 1827 4.116328 CGAGGCGCTCAAGGACGA 62.116 66.667 7.64 0.00 0.00 4.20
1774 1829 4.421479 AGGCGCTCAAGGACGACG 62.421 66.667 7.64 0.00 43.77 5.12
1775 1830 4.719369 GGCGCTCAAGGACGACGT 62.719 66.667 7.64 0.00 0.00 4.34
1776 1831 3.470567 GCGCTCAAGGACGACGTG 61.471 66.667 4.58 0.00 0.00 4.49
1777 1832 2.805353 CGCTCAAGGACGACGTGG 60.805 66.667 4.58 0.00 0.00 4.94
1779 1834 2.022129 GCTCAAGGACGACGTGGTG 61.022 63.158 8.32 0.02 0.00 4.17
2125 2183 3.484229 GCCATTTCAGATCAAGTCGTTCG 60.484 47.826 0.00 0.00 0.00 3.95
2136 2194 1.374252 GTCGTTCGTGCTGGATGGT 60.374 57.895 0.00 0.00 0.00 3.55
2196 2254 4.284550 ACGCTGTGGCCCAATGGT 62.285 61.111 0.00 0.00 34.44 3.55
2321 2379 1.308069 CGCAGGAACAGGGTCATTGG 61.308 60.000 0.00 0.00 0.00 3.16
2356 2414 4.065088 GTTGAGCAGTGACATTCCTACAA 58.935 43.478 0.00 0.00 0.00 2.41
2358 2416 3.578282 TGAGCAGTGACATTCCTACAAGA 59.422 43.478 0.00 0.00 0.00 3.02
2394 2452 2.282391 TTCCTGCCATGCGTGCTT 60.282 55.556 0.00 0.00 0.00 3.91
2449 2507 0.179240 GCTCACACTCGCACATTTCG 60.179 55.000 0.00 0.00 0.00 3.46
2456 2514 0.179215 CTCGCACATTTCGGTTCTGC 60.179 55.000 0.00 0.00 0.00 4.26
2460 2518 0.240945 CACATTTCGGTTCTGCCACC 59.759 55.000 0.00 0.00 36.97 4.61
2467 2525 1.550130 CGGTTCTGCCACCCTTCCTA 61.550 60.000 0.00 0.00 36.97 2.94
2488 2546 5.526479 CCTACGTGCATACTAGTTAGTCTGA 59.474 44.000 0.00 0.00 37.73 3.27
2529 2587 1.068588 CATGCCTGCCTGAAATCATGG 59.931 52.381 0.00 0.00 0.00 3.66
2621 2679 1.566703 TGTTGAAGGGAAACAGTGGGA 59.433 47.619 0.00 0.00 32.71 4.37
2636 2694 3.939564 GGAAAATCCCGCCTGCAT 58.060 55.556 0.00 0.00 0.00 3.96
2697 2755 9.668497 AGAGTACAGATTTACAAAGATAAACCC 57.332 33.333 0.00 0.00 0.00 4.11
2698 2756 9.444600 GAGTACAGATTTACAAAGATAAACCCA 57.555 33.333 0.00 0.00 0.00 4.51
2699 2757 9.449719 AGTACAGATTTACAAAGATAAACCCAG 57.550 33.333 0.00 0.00 0.00 4.45
2700 2758 9.444600 GTACAGATTTACAAAGATAAACCCAGA 57.555 33.333 0.00 0.00 0.00 3.86
2701 2759 8.567285 ACAGATTTACAAAGATAAACCCAGAG 57.433 34.615 0.00 0.00 0.00 3.35
2702 2760 8.383175 ACAGATTTACAAAGATAAACCCAGAGA 58.617 33.333 0.00 0.00 0.00 3.10
2703 2761 8.887717 CAGATTTACAAAGATAAACCCAGAGAG 58.112 37.037 0.00 0.00 0.00 3.20
2704 2762 8.606830 AGATTTACAAAGATAAACCCAGAGAGT 58.393 33.333 0.00 0.00 0.00 3.24
2705 2763 9.232473 GATTTACAAAGATAAACCCAGAGAGTT 57.768 33.333 0.00 0.00 0.00 3.01
2706 2764 8.617290 TTTACAAAGATAAACCCAGAGAGTTC 57.383 34.615 0.00 0.00 0.00 3.01
2707 2765 6.187727 ACAAAGATAAACCCAGAGAGTTCA 57.812 37.500 0.00 0.00 0.00 3.18
2708 2766 6.601332 ACAAAGATAAACCCAGAGAGTTCAA 58.399 36.000 0.00 0.00 0.00 2.69
2709 2767 7.234355 ACAAAGATAAACCCAGAGAGTTCAAT 58.766 34.615 0.00 0.00 0.00 2.57
2710 2768 8.383175 ACAAAGATAAACCCAGAGAGTTCAATA 58.617 33.333 0.00 0.00 0.00 1.90
2711 2769 9.231297 CAAAGATAAACCCAGAGAGTTCAATAA 57.769 33.333 0.00 0.00 0.00 1.40
2712 2770 9.807921 AAAGATAAACCCAGAGAGTTCAATAAA 57.192 29.630 0.00 0.00 0.00 1.40
2713 2771 9.807921 AAGATAAACCCAGAGAGTTCAATAAAA 57.192 29.630 0.00 0.00 0.00 1.52
2714 2772 9.232473 AGATAAACCCAGAGAGTTCAATAAAAC 57.768 33.333 0.00 0.00 0.00 2.43
2715 2773 5.941948 AACCCAGAGAGTTCAATAAAACG 57.058 39.130 0.00 0.00 34.27 3.60
2716 2774 5.223449 ACCCAGAGAGTTCAATAAAACGA 57.777 39.130 0.00 0.00 34.27 3.85
2717 2775 5.617252 ACCCAGAGAGTTCAATAAAACGAA 58.383 37.500 0.00 0.00 34.27 3.85
2718 2776 6.059484 ACCCAGAGAGTTCAATAAAACGAAA 58.941 36.000 0.00 0.00 34.27 3.46
2719 2777 6.544564 ACCCAGAGAGTTCAATAAAACGAAAA 59.455 34.615 0.00 0.00 34.27 2.29
2720 2778 7.078228 CCCAGAGAGTTCAATAAAACGAAAAG 58.922 38.462 0.00 0.00 34.27 2.27
2721 2779 7.041372 CCCAGAGAGTTCAATAAAACGAAAAGA 60.041 37.037 0.00 0.00 34.27 2.52
2722 2780 8.507249 CCAGAGAGTTCAATAAAACGAAAAGAT 58.493 33.333 0.00 0.00 34.27 2.40
2736 2794 9.712305 AAAACGAAAAGATATGAGAAGAGAAGA 57.288 29.630 0.00 0.00 0.00 2.87
2737 2795 8.925161 AACGAAAAGATATGAGAAGAGAAGAG 57.075 34.615 0.00 0.00 0.00 2.85
2738 2796 8.287439 ACGAAAAGATATGAGAAGAGAAGAGA 57.713 34.615 0.00 0.00 0.00 3.10
2739 2797 8.744652 ACGAAAAGATATGAGAAGAGAAGAGAA 58.255 33.333 0.00 0.00 0.00 2.87
2740 2798 9.236691 CGAAAAGATATGAGAAGAGAAGAGAAG 57.763 37.037 0.00 0.00 0.00 2.85
2746 2804 8.947055 ATATGAGAAGAGAAGAGAAGAAAAGC 57.053 34.615 0.00 0.00 0.00 3.51
2747 2805 6.418057 TGAGAAGAGAAGAGAAGAAAAGCT 57.582 37.500 0.00 0.00 0.00 3.74
2748 2806 7.531857 TGAGAAGAGAAGAGAAGAAAAGCTA 57.468 36.000 0.00 0.00 0.00 3.32
2749 2807 8.133024 TGAGAAGAGAAGAGAAGAAAAGCTAT 57.867 34.615 0.00 0.00 0.00 2.97
2750 2808 8.034215 TGAGAAGAGAAGAGAAGAAAAGCTATG 58.966 37.037 0.00 0.00 0.00 2.23
2751 2809 7.906327 AGAAGAGAAGAGAAGAAAAGCTATGT 58.094 34.615 0.00 0.00 0.00 2.29
2752 2810 9.030452 AGAAGAGAAGAGAAGAAAAGCTATGTA 57.970 33.333 0.00 0.00 0.00 2.29
2753 2811 9.301153 GAAGAGAAGAGAAGAAAAGCTATGTAG 57.699 37.037 0.00 0.00 0.00 2.74
2839 2897 7.334921 TGTGCTATGTTTATAAAGCGGTAAAGT 59.665 33.333 0.00 0.00 37.80 2.66
2844 2902 7.966246 TGTTTATAAAGCGGTAAAGTGAAGA 57.034 32.000 0.00 0.00 0.00 2.87
3496 3554 3.118223 GCTAACCATGCCTAGTTCCTCTT 60.118 47.826 0.00 0.00 0.00 2.85
3532 3590 2.910688 TCGCTGAGAAGTGGTCTTTT 57.089 45.000 0.00 0.00 36.41 2.27
3603 3661 8.202811 GCAGCTAAGATCATGATCTCCATATAA 58.797 37.037 33.00 14.63 46.75 0.98
3613 3671 6.499106 TGATCTCCATATAAGAAGGCACAA 57.501 37.500 0.00 0.00 0.00 3.33
3616 3674 8.000709 TGATCTCCATATAAGAAGGCACAATTT 58.999 33.333 0.00 0.00 0.00 1.82
3649 3707 0.491371 ATCCCCAAAAGCCCCAAGAA 59.509 50.000 0.00 0.00 0.00 2.52
3652 3710 0.762461 CCCAAAAGCCCCAAGAACCA 60.762 55.000 0.00 0.00 0.00 3.67
3834 3892 9.961265 ACTATTTAAAGCTTTCCTTGTTAACAC 57.039 29.630 16.57 0.00 33.01 3.32
3914 3972 3.623703 TGATTCCAGGTGATCACATTGG 58.376 45.455 29.27 29.27 38.30 3.16
3932 3990 3.385193 TGGCACATGATATGTCTACCG 57.615 47.619 0.00 0.00 42.70 4.02
4026 4084 7.391148 TCCTGGTAACTTCATAGCATTTTTC 57.609 36.000 0.00 0.00 33.24 2.29
4183 4241 4.271049 ACTGATTTTAAGATGATGACGCCG 59.729 41.667 0.00 0.00 0.00 6.46
4201 4260 2.286301 GCCGCTCGTGTCTAGTAAGTAG 60.286 54.545 0.00 0.00 0.00 2.57
4241 4300 5.785940 CCCCCAAGTTATAGCTACCTAGAAT 59.214 44.000 0.00 0.00 28.54 2.40
4354 4415 3.181451 TGCAGCTATAAATCCCTGTCCTG 60.181 47.826 0.00 0.00 0.00 3.86
4363 4424 1.348064 TCCCTGTCCTGTTGTGGTAG 58.652 55.000 0.00 0.00 0.00 3.18
4453 4514 2.584236 ACTCTGGTTCGTGTAGACAGT 58.416 47.619 0.00 0.00 0.00 3.55
4479 4540 6.877322 TGCAAGAAATGAAGGTACTAACTACC 59.123 38.462 0.00 0.00 45.19 3.18
4620 4681 1.079405 AGGTGGCGTGTTATCGTGG 60.079 57.895 0.00 0.00 0.00 4.94
4687 4748 3.130633 GCAAATCTTTTGCCTCCGTTTT 58.869 40.909 12.74 0.00 39.38 2.43
4733 4795 6.433716 TCATTCAATCCATGCAGTTTGACTTA 59.566 34.615 0.00 0.00 0.00 2.24
4817 4879 8.592809 TGCCATATTCTTTGACCTGTTAAAAAT 58.407 29.630 0.00 0.00 0.00 1.82
4868 4930 2.446435 ACAACCTGTATTGATGGTGCC 58.554 47.619 0.00 0.00 33.89 5.01
4893 4955 8.111836 CCGCTGAAAATTATTGATCAATGTTTG 58.888 33.333 27.59 16.76 32.50 2.93
4917 4979 2.978156 AGCTGGACCTTTCATCCAAA 57.022 45.000 0.00 0.00 45.67 3.28
4919 4981 4.591321 AGCTGGACCTTTCATCCAAATA 57.409 40.909 0.00 0.00 45.67 1.40
4926 4988 9.799106 CTGGACCTTTCATCCAAATATATTAGT 57.201 33.333 0.00 0.00 45.67 2.24
5078 5142 6.640907 GTCAGCCTGAAATTCAAACGTTATTT 59.359 34.615 0.00 4.04 0.00 1.40
5097 5161 8.785101 CGTTATTTTGTTAAGAATTGATCACCG 58.215 33.333 0.00 0.00 0.00 4.94
5351 5415 3.944422 TTGCTCAACTCTCGTTTTGTC 57.056 42.857 0.00 0.00 0.00 3.18
5370 5434 3.056536 TGTCGAAAATCTGGAGGTCTCTG 60.057 47.826 0.00 0.00 0.00 3.35
5378 5442 1.421646 CTGGAGGTCTCTGGGTGTTTT 59.578 52.381 0.00 0.00 0.00 2.43
5390 5454 3.558033 TGGGTGTTTTTAGAGTTGGTCC 58.442 45.455 0.00 0.00 0.00 4.46
5452 5516 3.726557 TTGCTGATGAACCATCTCCTT 57.273 42.857 8.22 0.00 41.06 3.36
5453 5517 3.272574 TGCTGATGAACCATCTCCTTC 57.727 47.619 8.22 0.00 41.06 3.46
5454 5518 2.092753 TGCTGATGAACCATCTCCTTCC 60.093 50.000 8.22 0.00 41.06 3.46
5455 5519 2.831333 CTGATGAACCATCTCCTTCCG 58.169 52.381 8.22 0.00 41.06 4.30
5456 5520 1.486310 TGATGAACCATCTCCTTCCGG 59.514 52.381 0.00 0.00 41.06 5.14
5457 5521 0.839946 ATGAACCATCTCCTTCCGGG 59.160 55.000 0.00 0.00 0.00 5.73
5458 5522 1.271840 TGAACCATCTCCTTCCGGGG 61.272 60.000 0.00 0.00 35.33 5.73
5459 5523 0.981277 GAACCATCTCCTTCCGGGGA 60.981 60.000 0.00 0.00 45.98 4.81
5460 5524 0.549169 AACCATCTCCTTCCGGGGAA 60.549 55.000 0.00 0.00 44.79 3.97
5461 5525 0.549169 ACCATCTCCTTCCGGGGAAA 60.549 55.000 0.00 0.00 44.79 3.13
5462 5526 0.623723 CCATCTCCTTCCGGGGAAAA 59.376 55.000 0.00 0.00 44.79 2.29
5463 5527 1.215423 CCATCTCCTTCCGGGGAAAAT 59.785 52.381 0.00 0.00 44.79 1.82
5464 5528 2.441750 CCATCTCCTTCCGGGGAAAATA 59.558 50.000 0.00 0.00 44.79 1.40
5465 5529 3.074538 CCATCTCCTTCCGGGGAAAATAT 59.925 47.826 0.00 0.00 44.79 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.487714 AATCTTGGGAGTTCGCTATTCA 57.512 40.909 0.00 0.00 0.00 2.57
29 30 4.223953 TCCTAATCTTGGGAGTTCGCTAT 58.776 43.478 0.00 0.00 32.39 2.97
112 116 9.366216 GTTTTGTCTTCACCTTTTCAGTTTTAT 57.634 29.630 0.00 0.00 0.00 1.40
170 182 8.439172 GGAGGAGTCTAGTATTCCTAGTCTTTA 58.561 40.741 10.88 0.00 44.06 1.85
188 200 2.182030 CGTTGCCGAGGAGGAGTC 59.818 66.667 0.00 0.00 45.00 3.36
245 257 7.281549 GCGGGATACTCTTTTTAGTTCCAATAA 59.718 37.037 0.00 0.00 32.66 1.40
317 333 6.410540 AGACCATCGCTTCTAGAAAATCTTT 58.589 36.000 6.63 0.00 0.00 2.52
328 344 1.769026 TGCTAGAGACCATCGCTTCT 58.231 50.000 0.00 0.00 0.00 2.85
383 402 8.385111 GTGTTTGAATCAATATTTGCTTGATGG 58.615 33.333 0.00 0.00 41.33 3.51
495 519 4.270008 CTCTTAATGGGTGGTTTTCCGAT 58.730 43.478 0.00 0.00 44.36 4.18
565 591 2.110757 TTGATGCAGGACTCGTGCCA 62.111 55.000 18.65 9.28 43.45 4.92
647 673 5.564651 CGCCCAAAGTTTTTGTCTGACATAT 60.565 40.000 11.86 0.00 0.00 1.78
648 674 4.261405 CGCCCAAAGTTTTTGTCTGACATA 60.261 41.667 11.86 3.88 0.00 2.29
662 688 4.214758 GTGTAGTCATTAAACGCCCAAAGT 59.785 41.667 0.00 0.00 0.00 2.66
674 701 9.613428 CTTGGAATTCATAAGGTGTAGTCATTA 57.387 33.333 7.93 0.00 0.00 1.90
688 715 7.838696 ACACAAACCATATCCTTGGAATTCATA 59.161 33.333 7.93 0.00 39.25 2.15
695 722 5.014755 AGGTAACACAAACCATATCCTTGGA 59.985 40.000 0.00 0.00 39.64 3.53
707 735 6.914215 GCAAGGTTTAGTAAGGTAACACAAAC 59.086 38.462 0.00 0.00 41.41 2.93
719 747 4.223477 ACCGGTGATAGCAAGGTTTAGTAA 59.777 41.667 6.12 0.00 34.78 2.24
731 759 2.380084 TTCAGAACACCGGTGATAGC 57.620 50.000 40.21 23.59 0.00 2.97
798 826 3.002791 GTCCGTGATCTTCATTCTTGCA 58.997 45.455 0.00 0.00 0.00 4.08
799 827 2.352960 GGTCCGTGATCTTCATTCTTGC 59.647 50.000 0.00 0.00 0.00 4.01
800 828 3.599343 TGGTCCGTGATCTTCATTCTTG 58.401 45.455 0.00 0.00 0.00 3.02
801 829 3.515502 TCTGGTCCGTGATCTTCATTCTT 59.484 43.478 0.00 0.00 0.00 2.52
802 830 3.099905 TCTGGTCCGTGATCTTCATTCT 58.900 45.455 0.00 0.00 0.00 2.40
803 831 3.190874 GTCTGGTCCGTGATCTTCATTC 58.809 50.000 0.00 0.00 0.00 2.67
804 832 2.567169 TGTCTGGTCCGTGATCTTCATT 59.433 45.455 0.00 0.00 0.00 2.57
805 833 2.179427 TGTCTGGTCCGTGATCTTCAT 58.821 47.619 0.00 0.00 0.00 2.57
806 834 1.627864 TGTCTGGTCCGTGATCTTCA 58.372 50.000 0.00 0.00 0.00 3.02
807 835 2.743636 TTGTCTGGTCCGTGATCTTC 57.256 50.000 0.00 0.00 0.00 2.87
808 836 3.071023 TCTTTTGTCTGGTCCGTGATCTT 59.929 43.478 0.00 0.00 0.00 2.40
809 837 2.632996 TCTTTTGTCTGGTCCGTGATCT 59.367 45.455 0.00 0.00 0.00 2.75
810 838 3.040147 TCTTTTGTCTGGTCCGTGATC 57.960 47.619 0.00 0.00 0.00 2.92
811 839 3.703001 ATCTTTTGTCTGGTCCGTGAT 57.297 42.857 0.00 0.00 0.00 3.06
812 840 3.576982 AGTATCTTTTGTCTGGTCCGTGA 59.423 43.478 0.00 0.00 0.00 4.35
813 841 3.926616 AGTATCTTTTGTCTGGTCCGTG 58.073 45.455 0.00 0.00 0.00 4.94
814 842 4.039973 TGAAGTATCTTTTGTCTGGTCCGT 59.960 41.667 0.00 0.00 0.00 4.69
815 843 4.566004 TGAAGTATCTTTTGTCTGGTCCG 58.434 43.478 0.00 0.00 0.00 4.79
816 844 6.173339 TCATGAAGTATCTTTTGTCTGGTCC 58.827 40.000 0.00 0.00 0.00 4.46
817 845 7.625185 GCTTCATGAAGTATCTTTTGTCTGGTC 60.625 40.741 30.88 9.11 40.45 4.02
818 846 6.150140 GCTTCATGAAGTATCTTTTGTCTGGT 59.850 38.462 30.88 0.00 40.45 4.00
819 847 6.149973 TGCTTCATGAAGTATCTTTTGTCTGG 59.850 38.462 30.88 6.58 40.45 3.86
820 848 7.137490 TGCTTCATGAAGTATCTTTTGTCTG 57.863 36.000 30.88 7.17 40.45 3.51
821 849 7.750229 TTGCTTCATGAAGTATCTTTTGTCT 57.250 32.000 30.88 0.00 40.45 3.41
822 850 8.976986 AATTGCTTCATGAAGTATCTTTTGTC 57.023 30.769 30.88 14.30 40.45 3.18
823 851 9.768662 AAAATTGCTTCATGAAGTATCTTTTGT 57.231 25.926 30.88 14.99 40.45 2.83
840 868 8.859156 CGCTGTATGTGTAAAATAAAATTGCTT 58.141 29.630 0.00 0.00 0.00 3.91
841 869 7.009174 GCGCTGTATGTGTAAAATAAAATTGCT 59.991 33.333 0.00 0.00 0.00 3.91
842 870 7.009174 AGCGCTGTATGTGTAAAATAAAATTGC 59.991 33.333 10.39 0.00 0.00 3.56
843 871 8.393395 AGCGCTGTATGTGTAAAATAAAATTG 57.607 30.769 10.39 0.00 0.00 2.32
844 872 7.700656 GGAGCGCTGTATGTGTAAAATAAAATT 59.299 33.333 18.48 0.00 0.00 1.82
845 873 7.067008 AGGAGCGCTGTATGTGTAAAATAAAAT 59.933 33.333 18.48 0.00 0.00 1.82
846 874 6.373216 AGGAGCGCTGTATGTGTAAAATAAAA 59.627 34.615 18.48 0.00 0.00 1.52
847 875 5.878116 AGGAGCGCTGTATGTGTAAAATAAA 59.122 36.000 18.48 0.00 0.00 1.40
848 876 5.424757 AGGAGCGCTGTATGTGTAAAATAA 58.575 37.500 18.48 0.00 0.00 1.40
849 877 5.018539 AGGAGCGCTGTATGTGTAAAATA 57.981 39.130 18.48 0.00 0.00 1.40
850 878 3.871594 GAGGAGCGCTGTATGTGTAAAAT 59.128 43.478 18.48 0.00 0.00 1.82
851 879 3.259064 GAGGAGCGCTGTATGTGTAAAA 58.741 45.455 18.48 0.00 0.00 1.52
852 880 2.734175 CGAGGAGCGCTGTATGTGTAAA 60.734 50.000 18.48 0.00 0.00 2.01
853 881 1.202256 CGAGGAGCGCTGTATGTGTAA 60.202 52.381 18.48 0.00 0.00 2.41
854 882 0.380733 CGAGGAGCGCTGTATGTGTA 59.619 55.000 18.48 0.00 0.00 2.90
855 883 1.139734 CGAGGAGCGCTGTATGTGT 59.860 57.895 18.48 0.00 0.00 3.72
856 884 0.458543 AACGAGGAGCGCTGTATGTG 60.459 55.000 18.48 1.43 46.04 3.21
857 885 0.246635 AAACGAGGAGCGCTGTATGT 59.753 50.000 18.48 5.21 46.04 2.29
858 886 0.924090 GAAACGAGGAGCGCTGTATG 59.076 55.000 18.48 4.43 46.04 2.39
859 887 0.179108 GGAAACGAGGAGCGCTGTAT 60.179 55.000 18.48 0.00 46.04 2.29
860 888 1.214589 GGAAACGAGGAGCGCTGTA 59.785 57.895 18.48 0.00 46.04 2.74
861 889 2.048127 GGAAACGAGGAGCGCTGT 60.048 61.111 18.48 2.53 46.04 4.40
862 890 1.630244 CTTGGAAACGAGGAGCGCTG 61.630 60.000 18.48 1.67 46.04 5.18
863 891 1.374758 CTTGGAAACGAGGAGCGCT 60.375 57.895 11.27 11.27 46.04 5.92
864 892 3.169198 CTTGGAAACGAGGAGCGC 58.831 61.111 0.00 0.00 46.04 5.92
870 898 3.243336 CGTCTAACTCCTTGGAAACGAG 58.757 50.000 0.00 0.00 41.95 4.18
871 899 2.029649 CCGTCTAACTCCTTGGAAACGA 60.030 50.000 0.00 0.00 0.00 3.85
872 900 2.029649 TCCGTCTAACTCCTTGGAAACG 60.030 50.000 0.00 0.00 0.00 3.60
873 901 3.243975 TGTCCGTCTAACTCCTTGGAAAC 60.244 47.826 0.00 0.00 0.00 2.78
874 902 2.967201 TGTCCGTCTAACTCCTTGGAAA 59.033 45.455 0.00 0.00 0.00 3.13
875 903 2.600790 TGTCCGTCTAACTCCTTGGAA 58.399 47.619 0.00 0.00 0.00 3.53
876 904 2.297698 TGTCCGTCTAACTCCTTGGA 57.702 50.000 0.00 0.00 0.00 3.53
877 905 3.396260 TTTGTCCGTCTAACTCCTTGG 57.604 47.619 0.00 0.00 0.00 3.61
878 906 7.429636 TTTAATTTGTCCGTCTAACTCCTTG 57.570 36.000 0.00 0.00 0.00 3.61
879 907 8.631480 AATTTAATTTGTCCGTCTAACTCCTT 57.369 30.769 0.00 0.00 0.00 3.36
880 908 8.631480 AAATTTAATTTGTCCGTCTAACTCCT 57.369 30.769 1.76 0.00 0.00 3.69
881 909 9.338291 GAAAATTTAATTTGTCCGTCTAACTCC 57.662 33.333 3.51 0.00 31.77 3.85
882 910 9.338291 GGAAAATTTAATTTGTCCGTCTAACTC 57.662 33.333 3.51 0.00 31.77 3.01
883 911 8.019094 CGGAAAATTTAATTTGTCCGTCTAACT 58.981 33.333 26.53 4.94 41.91 2.24
884 912 7.201291 GCGGAAAATTTAATTTGTCCGTCTAAC 60.201 37.037 30.20 20.34 44.78 2.34
885 913 6.802834 GCGGAAAATTTAATTTGTCCGTCTAA 59.197 34.615 30.20 0.00 44.78 2.10
886 914 6.316319 GCGGAAAATTTAATTTGTCCGTCTA 58.684 36.000 30.20 0.00 44.78 2.59
887 915 5.158494 GCGGAAAATTTAATTTGTCCGTCT 58.842 37.500 30.20 10.26 44.78 4.18
888 916 4.029750 CGCGGAAAATTTAATTTGTCCGTC 59.970 41.667 30.20 25.16 44.78 4.79
889 917 3.915569 CGCGGAAAATTTAATTTGTCCGT 59.084 39.130 30.20 11.29 44.78 4.69
890 918 3.241520 GCGCGGAAAATTTAATTTGTCCG 60.242 43.478 28.38 28.38 45.20 4.79
891 919 3.241520 CGCGCGGAAAATTTAATTTGTCC 60.242 43.478 24.84 11.12 31.77 4.02
892 920 3.776478 GCGCGCGGAAAATTTAATTTGTC 60.776 43.478 33.06 3.93 31.77 3.18
893 921 2.091432 GCGCGCGGAAAATTTAATTTGT 59.909 40.909 33.06 0.00 31.77 2.83
894 922 2.344142 AGCGCGCGGAAAATTTAATTTG 59.656 40.909 33.06 0.00 31.77 2.32
895 923 2.601804 AGCGCGCGGAAAATTTAATTT 58.398 38.095 33.06 0.00 0.00 1.82
896 924 2.271821 AGCGCGCGGAAAATTTAATT 57.728 40.000 33.06 0.00 0.00 1.40
897 925 2.711885 GTAGCGCGCGGAAAATTTAAT 58.288 42.857 33.06 5.80 0.00 1.40
898 926 1.527389 CGTAGCGCGCGGAAAATTTAA 60.527 47.619 33.06 0.00 0.00 1.52
899 927 0.025256 CGTAGCGCGCGGAAAATTTA 59.975 50.000 33.06 6.92 0.00 1.40
900 928 1.225908 CGTAGCGCGCGGAAAATTT 60.226 52.632 33.06 8.09 0.00 1.82
901 929 1.628447 TTCGTAGCGCGCGGAAAATT 61.628 50.000 33.06 8.96 41.07 1.82
902 930 1.628447 TTTCGTAGCGCGCGGAAAAT 61.628 50.000 31.00 17.02 41.07 1.82
903 931 1.628447 ATTTCGTAGCGCGCGGAAAA 61.628 50.000 34.00 27.57 41.07 2.29
904 932 2.095847 ATTTCGTAGCGCGCGGAAA 61.096 52.632 33.17 33.17 41.07 3.13
905 933 2.507547 ATTTCGTAGCGCGCGGAA 60.508 55.556 33.06 25.50 41.07 4.30
906 934 3.251763 CATTTCGTAGCGCGCGGA 61.252 61.111 33.06 21.19 41.07 5.54
907 935 4.919868 GCATTTCGTAGCGCGCGG 62.920 66.667 33.06 19.09 41.07 6.46
908 936 3.420222 AAGCATTTCGTAGCGCGCG 62.420 57.895 28.44 28.44 41.07 6.86
909 937 1.929714 CAAGCATTTCGTAGCGCGC 60.930 57.895 26.66 26.66 41.07 6.86
910 938 1.296867 CCAAGCATTTCGTAGCGCG 60.297 57.895 0.00 0.00 43.01 6.86
911 939 0.247695 GTCCAAGCATTTCGTAGCGC 60.248 55.000 0.00 0.00 35.48 5.92
912 940 0.025001 CGTCCAAGCATTTCGTAGCG 59.975 55.000 0.00 0.00 35.48 4.26
913 941 1.355971 TCGTCCAAGCATTTCGTAGC 58.644 50.000 0.00 0.00 0.00 3.58
914 942 2.285220 CCATCGTCCAAGCATTTCGTAG 59.715 50.000 0.00 0.00 0.00 3.51
915 943 2.276201 CCATCGTCCAAGCATTTCGTA 58.724 47.619 0.00 0.00 0.00 3.43
916 944 1.086696 CCATCGTCCAAGCATTTCGT 58.913 50.000 0.00 0.00 0.00 3.85
917 945 1.086696 ACCATCGTCCAAGCATTTCG 58.913 50.000 0.00 0.00 0.00 3.46
918 946 2.415893 CCAACCATCGTCCAAGCATTTC 60.416 50.000 0.00 0.00 0.00 2.17
919 947 1.545582 CCAACCATCGTCCAAGCATTT 59.454 47.619 0.00 0.00 0.00 2.32
920 948 1.176527 CCAACCATCGTCCAAGCATT 58.823 50.000 0.00 0.00 0.00 3.56
921 949 0.327924 TCCAACCATCGTCCAAGCAT 59.672 50.000 0.00 0.00 0.00 3.79
922 950 0.605319 GTCCAACCATCGTCCAAGCA 60.605 55.000 0.00 0.00 0.00 3.91
923 951 0.605319 TGTCCAACCATCGTCCAAGC 60.605 55.000 0.00 0.00 0.00 4.01
924 952 1.442769 CTGTCCAACCATCGTCCAAG 58.557 55.000 0.00 0.00 0.00 3.61
925 953 0.036164 CCTGTCCAACCATCGTCCAA 59.964 55.000 0.00 0.00 0.00 3.53
926 954 0.834261 TCCTGTCCAACCATCGTCCA 60.834 55.000 0.00 0.00 0.00 4.02
927 955 0.391263 GTCCTGTCCAACCATCGTCC 60.391 60.000 0.00 0.00 0.00 4.79
928 956 0.608640 AGTCCTGTCCAACCATCGTC 59.391 55.000 0.00 0.00 0.00 4.20
929 957 0.321671 CAGTCCTGTCCAACCATCGT 59.678 55.000 0.00 0.00 0.00 3.73
930 958 0.391661 CCAGTCCTGTCCAACCATCG 60.392 60.000 0.00 0.00 0.00 3.84
931 959 0.678048 GCCAGTCCTGTCCAACCATC 60.678 60.000 0.00 0.00 0.00 3.51
932 960 1.380302 GCCAGTCCTGTCCAACCAT 59.620 57.895 0.00 0.00 0.00 3.55
933 961 2.829384 GGCCAGTCCTGTCCAACCA 61.829 63.158 0.00 0.00 0.00 3.67
934 962 2.034221 GGCCAGTCCTGTCCAACC 59.966 66.667 0.00 0.00 0.00 3.77
935 963 2.358737 CGGCCAGTCCTGTCCAAC 60.359 66.667 2.24 0.00 0.00 3.77
936 964 2.525629 TCGGCCAGTCCTGTCCAA 60.526 61.111 2.24 0.00 0.00 3.53
937 965 2.997315 CTCGGCCAGTCCTGTCCA 60.997 66.667 2.24 0.00 0.00 4.02
938 966 2.997897 ACTCGGCCAGTCCTGTCC 60.998 66.667 2.24 0.00 0.00 4.02
939 967 2.262915 CACTCGGCCAGTCCTGTC 59.737 66.667 2.24 0.00 30.26 3.51
940 968 2.203640 TCACTCGGCCAGTCCTGT 60.204 61.111 2.24 0.00 30.26 4.00
941 969 2.262915 GTCACTCGGCCAGTCCTG 59.737 66.667 2.24 0.00 30.26 3.86
942 970 2.203640 TGTCACTCGGCCAGTCCT 60.204 61.111 2.24 0.00 30.26 3.85
943 971 2.048127 GTGTCACTCGGCCAGTCC 60.048 66.667 2.24 0.00 30.26 3.85
944 972 2.430921 CGTGTCACTCGGCCAGTC 60.431 66.667 2.24 0.00 30.26 3.51
945 973 4.664677 GCGTGTCACTCGGCCAGT 62.665 66.667 2.24 2.32 34.67 4.00
946 974 2.989881 TAGCGTGTCACTCGGCCAG 61.990 63.158 2.24 1.58 0.00 4.85
947 975 2.986979 TAGCGTGTCACTCGGCCA 60.987 61.111 2.24 0.00 0.00 5.36
948 976 2.506438 GTAGCGTGTCACTCGGCC 60.506 66.667 0.79 0.00 0.00 6.13
949 977 1.801913 CTGTAGCGTGTCACTCGGC 60.802 63.158 0.79 0.00 0.00 5.54
950 978 0.454620 GACTGTAGCGTGTCACTCGG 60.455 60.000 0.79 0.00 33.75 4.63
951 979 0.517755 AGACTGTAGCGTGTCACTCG 59.482 55.000 0.65 0.00 35.81 4.18
952 980 1.535896 TCAGACTGTAGCGTGTCACTC 59.464 52.381 1.59 0.00 35.81 3.51
953 981 1.605753 TCAGACTGTAGCGTGTCACT 58.394 50.000 1.59 0.00 35.81 3.41
954 982 2.638556 ATCAGACTGTAGCGTGTCAC 57.361 50.000 1.59 0.00 35.81 3.67
955 983 4.482386 GTTTATCAGACTGTAGCGTGTCA 58.518 43.478 1.59 0.00 35.81 3.58
956 984 3.858238 GGTTTATCAGACTGTAGCGTGTC 59.142 47.826 1.59 0.00 0.00 3.67
957 985 3.257375 TGGTTTATCAGACTGTAGCGTGT 59.743 43.478 1.59 0.00 0.00 4.49
958 986 3.845178 TGGTTTATCAGACTGTAGCGTG 58.155 45.455 1.59 0.00 0.00 5.34
959 987 4.441634 GGATGGTTTATCAGACTGTAGCGT 60.442 45.833 1.59 0.00 37.54 5.07
960 988 4.051922 GGATGGTTTATCAGACTGTAGCG 58.948 47.826 1.59 0.00 37.54 4.26
961 989 5.023533 TGGATGGTTTATCAGACTGTAGC 57.976 43.478 1.59 0.00 37.54 3.58
962 990 5.605534 CCTGGATGGTTTATCAGACTGTAG 58.394 45.833 1.59 0.00 37.54 2.74
963 991 5.614324 CCTGGATGGTTTATCAGACTGTA 57.386 43.478 1.59 0.00 37.54 2.74
964 992 4.494091 CCTGGATGGTTTATCAGACTGT 57.506 45.455 1.59 0.00 37.54 3.55
976 1004 4.915075 TCCCGTTGGATACCTGGATGGT 62.915 54.545 0.00 0.00 43.81 3.55
977 1005 0.108585 CCCGTTGGATACCTGGATGG 59.891 60.000 0.00 0.00 42.93 3.51
978 1006 1.070758 CTCCCGTTGGATACCTGGATG 59.929 57.143 0.00 0.00 40.80 3.51
979 1007 1.424638 CTCCCGTTGGATACCTGGAT 58.575 55.000 0.00 0.00 40.80 3.41
980 1008 1.335132 GCTCCCGTTGGATACCTGGA 61.335 60.000 0.00 0.00 40.80 3.86
981 1009 1.146263 GCTCCCGTTGGATACCTGG 59.854 63.158 0.00 0.00 40.80 4.45
982 1010 0.469917 ATGCTCCCGTTGGATACCTG 59.530 55.000 0.00 0.00 40.80 4.00
983 1011 0.469917 CATGCTCCCGTTGGATACCT 59.530 55.000 0.00 0.00 40.80 3.08
984 1012 1.166531 GCATGCTCCCGTTGGATACC 61.167 60.000 11.37 0.00 40.80 2.73
985 1013 1.166531 GGCATGCTCCCGTTGGATAC 61.167 60.000 18.92 0.00 40.80 2.24
986 1014 1.148273 GGCATGCTCCCGTTGGATA 59.852 57.895 18.92 0.00 40.80 2.59
987 1015 2.124151 GGCATGCTCCCGTTGGAT 60.124 61.111 18.92 0.00 40.80 3.41
988 1016 3.203086 TTGGCATGCTCCCGTTGGA 62.203 57.895 18.92 0.00 38.75 3.53
989 1017 2.676121 TTGGCATGCTCCCGTTGG 60.676 61.111 18.92 0.00 0.00 3.77
990 1018 2.879907 CTTGGCATGCTCCCGTTG 59.120 61.111 18.92 0.00 0.00 4.10
991 1019 3.064324 GCTTGGCATGCTCCCGTT 61.064 61.111 18.92 0.00 0.00 4.44
992 1020 4.349503 TGCTTGGCATGCTCCCGT 62.350 61.111 23.54 0.00 31.71 5.28
1024 1052 2.705658 TGCTCTGACAGAAGGAAAGGAA 59.294 45.455 6.61 0.00 0.00 3.36
1025 1053 2.301296 CTGCTCTGACAGAAGGAAAGGA 59.699 50.000 6.61 0.00 40.25 3.36
1026 1054 2.301296 TCTGCTCTGACAGAAGGAAAGG 59.699 50.000 6.61 0.00 43.59 3.11
1027 1055 3.587923 CTCTGCTCTGACAGAAGGAAAG 58.412 50.000 6.61 0.65 45.72 2.62
1028 1056 2.289320 GCTCTGCTCTGACAGAAGGAAA 60.289 50.000 6.61 0.00 45.72 3.13
1050 1078 4.803908 GGGAAGGGAAGGGCGCTG 62.804 72.222 7.64 0.00 40.06 5.18
1069 1097 1.306226 AAGAGTCCGAGGGAAGGGG 60.306 63.158 0.00 0.00 31.38 4.79
1070 1098 1.668101 CGAAGAGTCCGAGGGAAGGG 61.668 65.000 0.00 0.00 31.38 3.95
1071 1099 0.680280 TCGAAGAGTCCGAGGGAAGG 60.680 60.000 0.00 0.00 31.38 3.46
1072 1100 0.452585 GTCGAAGAGTCCGAGGGAAG 59.547 60.000 0.00 0.00 36.95 3.46
1073 1101 0.964358 GGTCGAAGAGTCCGAGGGAA 60.964 60.000 0.00 0.00 36.95 3.97
1074 1102 1.378250 GGTCGAAGAGTCCGAGGGA 60.378 63.158 0.00 0.00 36.95 4.20
1075 1103 3.198582 GGTCGAAGAGTCCGAGGG 58.801 66.667 0.00 0.00 36.95 4.30
1147 1175 1.408702 GGTAGCAGCTGAAGAGGAGAG 59.591 57.143 20.43 0.00 0.00 3.20
1159 1187 0.308993 GCGATGGATTTGGTAGCAGC 59.691 55.000 0.00 0.00 0.00 5.25
1186 1214 3.880846 CAGCATTTCCGCGGAGGC 61.881 66.667 29.76 29.76 40.77 4.70
1356 1396 2.737376 GCGTCTCGGGTGGTGTTC 60.737 66.667 0.00 0.00 0.00 3.18
1424 1464 3.557903 ATGCTGCTGAACACCCGCT 62.558 57.895 0.00 0.00 0.00 5.52
1431 1471 1.505353 GTGCTCCATGCTGCTGAAC 59.495 57.895 0.00 0.00 43.37 3.18
1469 1509 3.179265 CGCTGGCGTAGTTGTCGG 61.179 66.667 6.83 0.00 34.35 4.79
1609 1661 1.736645 CGGGGTTGCACACGTAGAG 60.737 63.158 0.00 0.00 0.00 2.43
1610 1662 2.030490 AACGGGGTTGCACACGTAGA 62.030 55.000 4.93 0.00 38.79 2.59
1761 1816 2.022129 CACCACGTCGTCCTTGAGC 61.022 63.158 0.00 0.00 0.00 4.26
1762 1817 2.022129 GCACCACGTCGTCCTTGAG 61.022 63.158 0.00 0.00 0.00 3.02
1763 1818 2.028484 GCACCACGTCGTCCTTGA 59.972 61.111 0.00 0.00 0.00 3.02
1765 1820 2.279918 GTGCACCACGTCGTCCTT 60.280 61.111 5.22 0.00 0.00 3.36
1767 1822 2.279918 AAGTGCACCACGTCGTCC 60.280 61.111 14.63 0.00 39.64 4.79
1873 1928 0.674895 GCCAGCACTTCGTGATTCCT 60.675 55.000 0.00 0.00 35.23 3.36
1977 2032 2.032528 CCTTCCGGCAGCTTGACA 59.967 61.111 0.00 0.00 0.00 3.58
2125 2183 1.812922 CGCTCTCACCATCCAGCAC 60.813 63.158 0.00 0.00 0.00 4.40
2196 2254 0.419865 TCTCCTTGGTACCATCCCCA 59.580 55.000 17.17 0.00 0.00 4.96
2305 2363 0.251341 GCACCAATGACCCTGTTCCT 60.251 55.000 0.00 0.00 0.00 3.36
2321 2379 1.798223 TGCTCAACACAGAATACGCAC 59.202 47.619 0.00 0.00 0.00 5.34
2394 2452 2.158900 GCTTGATCCGAGGAATGAAGGA 60.159 50.000 0.00 0.00 37.17 3.36
2437 2495 0.179215 GCAGAACCGAAATGTGCGAG 60.179 55.000 0.00 0.00 0.00 5.03
2449 2507 0.035343 GTAGGAAGGGTGGCAGAACC 60.035 60.000 0.00 0.00 39.71 3.62
2456 2514 0.828022 TATGCACGTAGGAAGGGTGG 59.172 55.000 0.00 0.00 32.42 4.61
2460 2518 4.650754 AACTAGTATGCACGTAGGAAGG 57.349 45.455 0.00 0.00 0.00 3.46
2467 2525 6.095021 TCAATCAGACTAACTAGTATGCACGT 59.905 38.462 6.63 0.00 43.29 4.49
2509 2567 1.068588 CCATGATTTCAGGCAGGCATG 59.931 52.381 0.00 0.00 34.47 4.06
2510 2568 1.342674 ACCATGATTTCAGGCAGGCAT 60.343 47.619 0.00 0.00 0.00 4.40
2511 2569 0.040058 ACCATGATTTCAGGCAGGCA 59.960 50.000 0.00 0.00 0.00 4.75
2512 2570 2.057137 TACCATGATTTCAGGCAGGC 57.943 50.000 0.00 0.00 0.00 4.85
2513 2571 4.019174 AGTTTACCATGATTTCAGGCAGG 58.981 43.478 0.00 0.00 0.00 4.85
2514 2572 4.460382 ACAGTTTACCATGATTTCAGGCAG 59.540 41.667 0.00 0.00 0.00 4.85
2523 2581 9.770097 CTGATACATAGAACAGTTTACCATGAT 57.230 33.333 0.00 0.00 0.00 2.45
2671 2729 9.668497 GGGTTTATCTTTGTAAATCTGTACTCT 57.332 33.333 0.00 0.00 0.00 3.24
2672 2730 9.444600 TGGGTTTATCTTTGTAAATCTGTACTC 57.555 33.333 0.00 0.00 0.00 2.59
2673 2731 9.449719 CTGGGTTTATCTTTGTAAATCTGTACT 57.550 33.333 0.00 0.00 0.00 2.73
2674 2732 9.444600 TCTGGGTTTATCTTTGTAAATCTGTAC 57.555 33.333 0.00 0.00 0.00 2.90
2675 2733 9.667107 CTCTGGGTTTATCTTTGTAAATCTGTA 57.333 33.333 0.00 0.00 0.00 2.74
2676 2734 8.383175 TCTCTGGGTTTATCTTTGTAAATCTGT 58.617 33.333 0.00 0.00 0.00 3.41
2677 2735 8.792830 TCTCTGGGTTTATCTTTGTAAATCTG 57.207 34.615 0.00 0.00 0.00 2.90
2678 2736 8.606830 ACTCTCTGGGTTTATCTTTGTAAATCT 58.393 33.333 0.00 0.00 0.00 2.40
2679 2737 8.794335 ACTCTCTGGGTTTATCTTTGTAAATC 57.206 34.615 0.00 0.00 0.00 2.17
2680 2738 9.232473 GAACTCTCTGGGTTTATCTTTGTAAAT 57.768 33.333 0.00 0.00 0.00 1.40
2681 2739 8.215050 TGAACTCTCTGGGTTTATCTTTGTAAA 58.785 33.333 0.00 0.00 0.00 2.01
2682 2740 7.741785 TGAACTCTCTGGGTTTATCTTTGTAA 58.258 34.615 0.00 0.00 0.00 2.41
2683 2741 7.311092 TGAACTCTCTGGGTTTATCTTTGTA 57.689 36.000 0.00 0.00 0.00 2.41
2684 2742 6.187727 TGAACTCTCTGGGTTTATCTTTGT 57.812 37.500 0.00 0.00 0.00 2.83
2685 2743 7.693969 ATTGAACTCTCTGGGTTTATCTTTG 57.306 36.000 0.00 0.00 0.00 2.77
2686 2744 9.807921 TTTATTGAACTCTCTGGGTTTATCTTT 57.192 29.630 0.00 0.00 0.00 2.52
2687 2745 9.807921 TTTTATTGAACTCTCTGGGTTTATCTT 57.192 29.630 0.00 0.00 0.00 2.40
2688 2746 9.232473 GTTTTATTGAACTCTCTGGGTTTATCT 57.768 33.333 0.00 0.00 0.00 1.98
2689 2747 8.175716 CGTTTTATTGAACTCTCTGGGTTTATC 58.824 37.037 0.00 0.00 0.00 1.75
2690 2748 7.881232 TCGTTTTATTGAACTCTCTGGGTTTAT 59.119 33.333 0.00 0.00 0.00 1.40
2691 2749 7.218614 TCGTTTTATTGAACTCTCTGGGTTTA 58.781 34.615 0.00 0.00 0.00 2.01
2692 2750 6.059484 TCGTTTTATTGAACTCTCTGGGTTT 58.941 36.000 0.00 0.00 0.00 3.27
2693 2751 5.617252 TCGTTTTATTGAACTCTCTGGGTT 58.383 37.500 0.00 0.00 0.00 4.11
2694 2752 5.223449 TCGTTTTATTGAACTCTCTGGGT 57.777 39.130 0.00 0.00 0.00 4.51
2695 2753 6.554334 TTTCGTTTTATTGAACTCTCTGGG 57.446 37.500 0.00 0.00 0.00 4.45
2696 2754 7.861630 TCTTTTCGTTTTATTGAACTCTCTGG 58.138 34.615 0.00 0.00 0.00 3.86
2710 2768 9.712305 TCTTCTCTTCTCATATCTTTTCGTTTT 57.288 29.630 0.00 0.00 0.00 2.43
2711 2769 9.364989 CTCTTCTCTTCTCATATCTTTTCGTTT 57.635 33.333 0.00 0.00 0.00 3.60
2712 2770 8.744652 TCTCTTCTCTTCTCATATCTTTTCGTT 58.255 33.333 0.00 0.00 0.00 3.85
2713 2771 8.287439 TCTCTTCTCTTCTCATATCTTTTCGT 57.713 34.615 0.00 0.00 0.00 3.85
2714 2772 9.236691 CTTCTCTTCTCTTCTCATATCTTTTCG 57.763 37.037 0.00 0.00 0.00 3.46
2720 2778 9.034544 GCTTTTCTTCTCTTCTCTTCTCATATC 57.965 37.037 0.00 0.00 0.00 1.63
2721 2779 8.761689 AGCTTTTCTTCTCTTCTCTTCTCATAT 58.238 33.333 0.00 0.00 0.00 1.78
2722 2780 8.133024 AGCTTTTCTTCTCTTCTCTTCTCATA 57.867 34.615 0.00 0.00 0.00 2.15
2723 2781 7.008021 AGCTTTTCTTCTCTTCTCTTCTCAT 57.992 36.000 0.00 0.00 0.00 2.90
2724 2782 6.418057 AGCTTTTCTTCTCTTCTCTTCTCA 57.582 37.500 0.00 0.00 0.00 3.27
2725 2783 8.034804 ACATAGCTTTTCTTCTCTTCTCTTCTC 58.965 37.037 0.00 0.00 0.00 2.87
2726 2784 7.906327 ACATAGCTTTTCTTCTCTTCTCTTCT 58.094 34.615 0.00 0.00 0.00 2.85
2727 2785 9.301153 CTACATAGCTTTTCTTCTCTTCTCTTC 57.699 37.037 0.00 0.00 0.00 2.87
2728 2786 7.763985 GCTACATAGCTTTTCTTCTCTTCTCTT 59.236 37.037 3.56 0.00 45.62 2.85
2729 2787 7.264947 GCTACATAGCTTTTCTTCTCTTCTCT 58.735 38.462 3.56 0.00 45.62 3.10
2730 2788 7.463469 GCTACATAGCTTTTCTTCTCTTCTC 57.537 40.000 3.56 0.00 45.62 2.87
2746 2804 5.788450 CCTACTTCCTCCATTGCTACATAG 58.212 45.833 0.00 0.00 0.00 2.23
2747 2805 4.040461 GCCTACTTCCTCCATTGCTACATA 59.960 45.833 0.00 0.00 0.00 2.29
2748 2806 3.181450 GCCTACTTCCTCCATTGCTACAT 60.181 47.826 0.00 0.00 0.00 2.29
2749 2807 2.170607 GCCTACTTCCTCCATTGCTACA 59.829 50.000 0.00 0.00 0.00 2.74
2750 2808 2.436173 AGCCTACTTCCTCCATTGCTAC 59.564 50.000 0.00 0.00 0.00 3.58
2751 2809 2.764269 AGCCTACTTCCTCCATTGCTA 58.236 47.619 0.00 0.00 0.00 3.49
2752 2810 1.589414 AGCCTACTTCCTCCATTGCT 58.411 50.000 0.00 0.00 0.00 3.91
2753 2811 2.426842 AAGCCTACTTCCTCCATTGC 57.573 50.000 0.00 0.00 0.00 3.56
2754 2812 4.200092 GGTTAAGCCTACTTCCTCCATTG 58.800 47.826 0.00 0.00 37.33 2.82
2755 2813 3.850173 TGGTTAAGCCTACTTCCTCCATT 59.150 43.478 1.51 0.00 37.33 3.16
2756 2814 3.460825 TGGTTAAGCCTACTTCCTCCAT 58.539 45.455 1.51 0.00 37.33 3.41
2757 2815 2.910544 TGGTTAAGCCTACTTCCTCCA 58.089 47.619 1.51 0.00 37.33 3.86
2758 2816 4.452825 GAATGGTTAAGCCTACTTCCTCC 58.547 47.826 1.51 0.00 37.33 4.30
2759 2817 4.164413 AGGAATGGTTAAGCCTACTTCCTC 59.836 45.833 16.10 0.00 42.36 3.71
2760 2818 4.112331 AGGAATGGTTAAGCCTACTTCCT 58.888 43.478 16.10 16.10 41.81 3.36
2761 2819 4.505324 AGGAATGGTTAAGCCTACTTCC 57.495 45.455 1.51 9.17 39.32 3.46
2762 2820 7.933215 TTTAAGGAATGGTTAAGCCTACTTC 57.067 36.000 1.51 0.84 37.33 3.01
2763 2821 7.948447 AGTTTTAAGGAATGGTTAAGCCTACTT 59.052 33.333 1.51 4.60 40.07 2.24
2764 2822 7.393515 CAGTTTTAAGGAATGGTTAAGCCTACT 59.606 37.037 1.51 0.00 38.35 2.57
2765 2823 7.392393 TCAGTTTTAAGGAATGGTTAAGCCTAC 59.608 37.037 1.51 0.00 38.35 3.18
2809 2867 6.183360 ACCGCTTTATAAACATAGCACAGAAC 60.183 38.462 7.46 0.00 33.29 3.01
2810 2868 5.878116 ACCGCTTTATAAACATAGCACAGAA 59.122 36.000 7.46 0.00 33.29 3.02
2811 2869 5.424757 ACCGCTTTATAAACATAGCACAGA 58.575 37.500 7.46 0.00 33.29 3.41
2812 2870 5.734855 ACCGCTTTATAAACATAGCACAG 57.265 39.130 7.46 0.00 33.29 3.66
2813 2871 7.334921 ACTTTACCGCTTTATAAACATAGCACA 59.665 33.333 7.46 0.00 33.29 4.57
2814 2872 7.638683 CACTTTACCGCTTTATAAACATAGCAC 59.361 37.037 7.46 0.00 33.29 4.40
2815 2873 7.549842 TCACTTTACCGCTTTATAAACATAGCA 59.450 33.333 7.46 0.00 33.29 3.49
2839 2897 1.758514 CCCCTAGCGCCTCTCTTCA 60.759 63.158 2.29 0.00 0.00 3.02
2896 2954 3.146847 TCAGAGTCTGTCTAAAGCGTCA 58.853 45.455 19.53 0.00 32.51 4.35
3496 3554 9.942850 TTCTCAGCGATGGAAAATGATATATAA 57.057 29.630 0.00 0.00 0.00 0.98
3532 3590 9.874205 AAGAAACAACAAAATCTTCAGAAATGA 57.126 25.926 0.00 0.00 0.00 2.57
3565 3623 0.991146 TTAGCTGCCTGGGTCATTCA 59.009 50.000 0.00 0.00 0.00 2.57
3613 3671 5.769835 TGGGGATATCAAGAAGAAGCAAAT 58.230 37.500 4.83 0.00 0.00 2.32
3616 3674 4.860802 TTGGGGATATCAAGAAGAAGCA 57.139 40.909 4.83 0.00 0.00 3.91
3649 3707 3.532102 ACAGAGGAAGGGAACTATTGGT 58.468 45.455 0.00 0.00 42.68 3.67
3734 3792 8.970691 ATTGTACAAGAACTTGAATTATGTGC 57.029 30.769 19.35 2.46 42.93 4.57
3776 3834 7.806149 TCGTGGCTACAATATTATTATGTCG 57.194 36.000 0.00 0.00 0.00 4.35
3844 3902 8.557029 AGTTACAATAACTTGAACAACAGCTAC 58.443 33.333 0.00 0.00 36.20 3.58
3912 3970 2.547855 GCGGTAGACATATCATGTGCCA 60.548 50.000 0.00 0.00 45.03 4.92
3914 3972 2.754472 TGCGGTAGACATATCATGTGC 58.246 47.619 0.00 0.00 45.03 4.57
3932 3990 5.527582 CCAGTAACCAGGACAATACTTATGC 59.472 44.000 0.00 0.00 0.00 3.14
4026 4084 4.809958 CAGATGCAACTCTTCACTATCTGG 59.190 45.833 0.00 0.00 37.48 3.86
4183 4241 3.002553 GGAGCTACTTACTAGACACGAGC 59.997 52.174 0.00 0.00 0.00 5.03
4241 4300 8.901472 ATAACCAGAGCATCAGGATATAGTTA 57.099 34.615 0.00 0.00 46.05 2.24
4354 4415 8.281212 AGAATTTGAATGATACCTACCACAAC 57.719 34.615 0.00 0.00 0.00 3.32
4363 4424 9.832445 TCAAGGTACTAGAATTTGAATGATACC 57.168 33.333 0.00 0.00 38.49 2.73
4453 4514 8.319143 GTAGTTAGTACCTTCATTTCTTGCAA 57.681 34.615 0.00 0.00 0.00 4.08
4479 4540 6.751514 TTACATACATTGGCTGGTAACTTG 57.248 37.500 0.00 0.00 37.61 3.16
4644 4705 9.425248 TTTGCCTCATCAATTAATTAAGAGGAT 57.575 29.630 28.97 15.25 42.87 3.24
4667 4728 4.367450 TCAAAACGGAGGCAAAAGATTTG 58.633 39.130 0.00 0.00 0.00 2.32
4668 4729 4.664150 TCAAAACGGAGGCAAAAGATTT 57.336 36.364 0.00 0.00 0.00 2.17
4716 4778 7.994425 TTTTATCTAAGTCAAACTGCATGGA 57.006 32.000 0.00 0.00 0.00 3.41
4770 4832 6.433716 TGGCATTGACACTGAAATCTAATTCA 59.566 34.615 0.00 0.00 37.70 2.57
4787 4849 5.263599 ACAGGTCAAAGAATATGGCATTGA 58.736 37.500 4.78 0.00 0.00 2.57
4817 4879 5.189928 AGGCACCGTTGTGAAATGAATATA 58.810 37.500 0.00 0.00 45.76 0.86
4834 4896 4.270008 ACAGGTTGTTGATATAAGGCACC 58.730 43.478 0.00 0.00 0.00 5.01
4868 4930 8.649841 ACAAACATTGATCAATAATTTTCAGCG 58.350 29.630 20.32 12.84 0.00 5.18
4893 4955 4.079253 TGGATGAAAGGTCCAGCTAAAAC 58.921 43.478 0.00 0.00 40.72 2.43
4926 4988 9.555727 AGTTTTTGTACTGCTAGTTCAGAAATA 57.444 29.630 4.57 0.00 34.17 1.40
5078 5142 3.749088 ACGCGGTGATCAATTCTTAACAA 59.251 39.130 12.47 0.00 0.00 2.83
5097 5161 8.902040 ATCTTGATTGAAGAAGAAAATTACGC 57.098 30.769 0.00 0.00 44.11 4.42
5145 5209 6.588719 ACCACAACAGTATTTGCAATATGT 57.411 33.333 0.00 0.01 0.00 2.29
5152 5216 4.755123 AGTCAGTACCACAACAGTATTTGC 59.245 41.667 0.00 0.00 0.00 3.68
5161 5225 2.240493 ACAGCAGTCAGTACCACAAC 57.760 50.000 0.00 0.00 0.00 3.32
5163 5227 3.133183 TGTAAACAGCAGTCAGTACCACA 59.867 43.478 0.00 0.00 0.00 4.17
5351 5415 2.419297 CCCAGAGACCTCCAGATTTTCG 60.419 54.545 0.00 0.00 0.00 3.46
5370 5434 2.889045 GGGACCAACTCTAAAAACACCC 59.111 50.000 0.00 0.00 0.00 4.61
5378 5442 2.853705 CCAAAACGGGACCAACTCTAA 58.146 47.619 0.00 0.00 0.00 2.10
5390 5454 4.076394 TCTCAAGTTTATCCCCAAAACGG 58.924 43.478 0.00 0.00 40.86 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.