Multiple sequence alignment - TraesCS2B01G330200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G330200 chr2B 100.000 2543 0 0 1 2543 474625216 474627758 0.000000e+00 4697
1 TraesCS2B01G330200 chr2A 94.323 775 28 6 908 1669 537513347 537514118 0.000000e+00 1173
2 TraesCS2B01G330200 chr2A 91.199 534 30 8 372 894 537512701 537513228 0.000000e+00 710
3 TraesCS2B01G330200 chr2A 91.270 252 11 4 1731 1972 537514285 537514535 1.460000e-87 333
4 TraesCS2B01G330200 chr2D 87.430 1066 56 29 908 1896 400387797 400388861 0.000000e+00 1155
5 TraesCS2B01G330200 chr2D 91.513 542 33 10 2005 2543 67417502 67416971 0.000000e+00 734
6 TraesCS2B01G330200 chr2D 90.747 562 27 8 368 912 400387134 400387687 0.000000e+00 726
7 TraesCS2B01G330200 chr3D 91.078 538 39 5 2008 2543 48380540 48380010 0.000000e+00 719
8 TraesCS2B01G330200 chr7B 90.892 538 40 6 2008 2543 131977432 131976902 0.000000e+00 713
9 TraesCS2B01G330200 chr7B 89.649 541 49 5 2005 2543 746446413 746446948 0.000000e+00 682
10 TraesCS2B01G330200 chr6A 90.724 539 41 6 2003 2539 587708071 587707540 0.000000e+00 710
11 TraesCS2B01G330200 chr4B 89.425 539 50 5 2008 2543 97068396 97067862 0.000000e+00 673
12 TraesCS2B01G330200 chr4B 99.600 250 1 0 1 250 278541794 278542043 8.290000e-125 457
13 TraesCS2B01G330200 chr4B 99.598 249 1 0 1 249 323816803 323817051 2.980000e-124 455
14 TraesCS2B01G330200 chr4B 99.598 249 1 0 1 249 323824922 323825170 2.980000e-124 455
15 TraesCS2B01G330200 chr5B 89.259 540 45 8 2008 2543 690169341 690168811 0.000000e+00 664
16 TraesCS2B01G330200 chr5B 87.873 536 40 11 2008 2543 591492511 591492001 7.780000e-170 606
17 TraesCS2B01G330200 chr5B 74.689 241 57 4 282 519 487342331 487342570 1.240000e-18 104
18 TraesCS2B01G330200 chr7D 89.277 401 37 6 2143 2543 36323398 36323004 4.890000e-137 497
19 TraesCS2B01G330200 chrUn 100.000 249 0 0 1 249 432659509 432659757 6.410000e-126 460
20 TraesCS2B01G330200 chr7A 100.000 249 0 0 1 249 416474907 416475155 6.410000e-126 460
21 TraesCS2B01G330200 chr7A 100.000 249 0 0 1 249 416483054 416483302 6.410000e-126 460
22 TraesCS2B01G330200 chr6B 100.000 249 0 0 1 249 501456319 501456071 6.410000e-126 460
23 TraesCS2B01G330200 chr6B 100.000 249 0 0 1 249 501464499 501464251 6.410000e-126 460
24 TraesCS2B01G330200 chr6B 90.821 207 14 2 2341 2543 39729042 39729247 3.220000e-69 272
25 TraesCS2B01G330200 chr1B 99.598 249 1 0 1 249 254394652 254394900 2.980000e-124 455
26 TraesCS2B01G330200 chr5D 91.566 249 19 1 2008 2256 480400451 480400205 2.420000e-90 342


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G330200 chr2B 474625216 474627758 2542 False 4697.000000 4697 100.0000 1 2543 1 chr2B.!!$F1 2542
1 TraesCS2B01G330200 chr2A 537512701 537514535 1834 False 738.666667 1173 92.2640 372 1972 3 chr2A.!!$F1 1600
2 TraesCS2B01G330200 chr2D 400387134 400388861 1727 False 940.500000 1155 89.0885 368 1896 2 chr2D.!!$F1 1528
3 TraesCS2B01G330200 chr2D 67416971 67417502 531 True 734.000000 734 91.5130 2005 2543 1 chr2D.!!$R1 538
4 TraesCS2B01G330200 chr3D 48380010 48380540 530 True 719.000000 719 91.0780 2008 2543 1 chr3D.!!$R1 535
5 TraesCS2B01G330200 chr7B 131976902 131977432 530 True 713.000000 713 90.8920 2008 2543 1 chr7B.!!$R1 535
6 TraesCS2B01G330200 chr7B 746446413 746446948 535 False 682.000000 682 89.6490 2005 2543 1 chr7B.!!$F1 538
7 TraesCS2B01G330200 chr6A 587707540 587708071 531 True 710.000000 710 90.7240 2003 2539 1 chr6A.!!$R1 536
8 TraesCS2B01G330200 chr4B 97067862 97068396 534 True 673.000000 673 89.4250 2008 2543 1 chr4B.!!$R1 535
9 TraesCS2B01G330200 chr5B 690168811 690169341 530 True 664.000000 664 89.2590 2008 2543 1 chr5B.!!$R2 535
10 TraesCS2B01G330200 chr5B 591492001 591492511 510 True 606.000000 606 87.8730 2008 2543 1 chr5B.!!$R1 535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
557 559 0.110419 TTCGCGAGTGAAAAATGGCG 60.11 50.0 9.59 0.0 44.47 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1980 2267 0.251916 TTGGGGGATGTGCTAACTCG 59.748 55.0 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.538118 GTTCACTTTAATTGTTTCCAGGGG 58.462 41.667 0.00 0.00 0.00 4.79
24 25 5.068215 TCACTTTAATTGTTTCCAGGGGA 57.932 39.130 0.00 0.00 0.00 4.81
25 26 5.459505 TCACTTTAATTGTTTCCAGGGGAA 58.540 37.500 0.00 0.00 40.27 3.97
37 38 6.867519 TTTCCAGGGGAAATCTAAAAATCC 57.132 37.500 6.35 0.00 45.42 3.01
38 39 5.544441 TCCAGGGGAAATCTAAAAATCCA 57.456 39.130 0.00 0.00 33.48 3.41
39 40 6.103838 TCCAGGGGAAATCTAAAAATCCAT 57.896 37.500 0.00 0.00 33.48 3.41
40 41 6.511208 TCCAGGGGAAATCTAAAAATCCATT 58.489 36.000 0.00 0.00 33.48 3.16
41 42 7.657306 TCCAGGGGAAATCTAAAAATCCATTA 58.343 34.615 0.00 0.00 33.48 1.90
42 43 8.125733 TCCAGGGGAAATCTAAAAATCCATTAA 58.874 33.333 0.00 0.00 33.48 1.40
43 44 8.767436 CCAGGGGAAATCTAAAAATCCATTAAA 58.233 33.333 0.00 0.00 33.48 1.52
60 61 9.745018 ATCCATTAAATGATAGTTCCTACATGG 57.255 33.333 0.00 0.00 37.10 3.66
61 62 8.723365 TCCATTAAATGATAGTTCCTACATGGT 58.277 33.333 0.00 0.00 37.07 3.55
65 66 9.841295 TTAAATGATAGTTCCTACATGGTAACC 57.159 33.333 0.00 0.00 37.07 2.85
66 67 7.446106 AATGATAGTTCCTACATGGTAACCA 57.554 36.000 0.00 0.00 38.19 3.67
67 68 6.229936 TGATAGTTCCTACATGGTAACCAC 57.770 41.667 0.00 0.00 35.80 4.16
68 69 5.962031 TGATAGTTCCTACATGGTAACCACT 59.038 40.000 0.00 0.00 35.80 4.00
69 70 6.442564 TGATAGTTCCTACATGGTAACCACTT 59.557 38.462 0.00 0.00 35.80 3.16
70 71 7.620491 TGATAGTTCCTACATGGTAACCACTTA 59.380 37.037 0.00 0.00 35.80 2.24
71 72 6.295719 AGTTCCTACATGGTAACCACTTAG 57.704 41.667 0.00 0.00 35.80 2.18
72 73 5.783875 AGTTCCTACATGGTAACCACTTAGT 59.216 40.000 0.00 0.00 35.80 2.24
73 74 5.670792 TCCTACATGGTAACCACTTAGTG 57.329 43.478 5.22 5.22 35.80 2.74
74 75 5.335261 TCCTACATGGTAACCACTTAGTGA 58.665 41.667 14.66 0.00 35.80 3.41
75 76 5.781306 TCCTACATGGTAACCACTTAGTGAA 59.219 40.000 14.66 0.00 35.80 3.18
76 77 6.442564 TCCTACATGGTAACCACTTAGTGAAT 59.557 38.462 14.66 4.60 35.80 2.57
77 78 7.620491 TCCTACATGGTAACCACTTAGTGAATA 59.380 37.037 14.66 3.60 35.80 1.75
78 79 8.429641 CCTACATGGTAACCACTTAGTGAATAT 58.570 37.037 14.66 0.00 35.80 1.28
79 80 9.832445 CTACATGGTAACCACTTAGTGAATATT 57.168 33.333 14.66 5.33 35.80 1.28
81 82 9.528489 ACATGGTAACCACTTAGTGAATATTTT 57.472 29.630 14.66 0.16 35.80 1.82
83 84 9.747898 ATGGTAACCACTTAGTGAATATTTTCA 57.252 29.630 14.66 0.00 36.49 2.69
84 85 9.575868 TGGTAACCACTTAGTGAATATTTTCAA 57.424 29.630 14.66 0.00 43.29 2.69
85 86 9.836076 GGTAACCACTTAGTGAATATTTTCAAC 57.164 33.333 14.66 0.00 43.29 3.18
86 87 9.836076 GTAACCACTTAGTGAATATTTTCAACC 57.164 33.333 14.66 0.00 43.29 3.77
87 88 7.462571 ACCACTTAGTGAATATTTTCAACCC 57.537 36.000 14.66 0.00 43.29 4.11
88 89 7.007723 ACCACTTAGTGAATATTTTCAACCCA 58.992 34.615 14.66 0.00 43.29 4.51
89 90 7.507616 ACCACTTAGTGAATATTTTCAACCCAA 59.492 33.333 14.66 0.00 43.29 4.12
90 91 7.812669 CCACTTAGTGAATATTTTCAACCCAAC 59.187 37.037 14.66 0.00 43.29 3.77
91 92 8.356657 CACTTAGTGAATATTTTCAACCCAACA 58.643 33.333 6.50 0.00 43.29 3.33
92 93 8.919145 ACTTAGTGAATATTTTCAACCCAACAA 58.081 29.630 0.00 0.00 43.29 2.83
93 94 9.757227 CTTAGTGAATATTTTCAACCCAACAAA 57.243 29.630 0.00 0.00 43.29 2.83
94 95 9.535878 TTAGTGAATATTTTCAACCCAACAAAC 57.464 29.630 0.00 0.00 43.29 2.93
95 96 7.560368 AGTGAATATTTTCAACCCAACAAACA 58.440 30.769 0.00 0.00 43.29 2.83
96 97 8.210265 AGTGAATATTTTCAACCCAACAAACAT 58.790 29.630 0.00 0.00 43.29 2.71
97 98 8.835439 GTGAATATTTTCAACCCAACAAACATT 58.165 29.630 0.00 0.00 43.29 2.71
98 99 9.401058 TGAATATTTTCAACCCAACAAACATTT 57.599 25.926 0.00 0.00 38.90 2.32
104 105 9.846248 TTTTCAACCCAACAAACATTTTAATTG 57.154 25.926 0.00 0.00 0.00 2.32
105 106 8.792830 TTCAACCCAACAAACATTTTAATTGA 57.207 26.923 0.00 0.00 0.00 2.57
106 107 8.202745 TCAACCCAACAAACATTTTAATTGAC 57.797 30.769 0.00 0.00 0.00 3.18
107 108 7.824289 TCAACCCAACAAACATTTTAATTGACA 59.176 29.630 0.00 0.00 0.00 3.58
108 109 7.784633 ACCCAACAAACATTTTAATTGACAG 57.215 32.000 0.00 0.00 0.00 3.51
109 110 7.334858 ACCCAACAAACATTTTAATTGACAGT 58.665 30.769 0.00 0.00 0.00 3.55
110 111 7.826744 ACCCAACAAACATTTTAATTGACAGTT 59.173 29.630 0.00 0.00 0.00 3.16
111 112 8.672815 CCCAACAAACATTTTAATTGACAGTTT 58.327 29.630 0.00 0.00 0.00 2.66
160 161 9.973450 TTATTTGAAATTTGAATTTGACTCCGA 57.027 25.926 6.44 0.00 38.64 4.55
162 163 8.885494 TTTGAAATTTGAATTTGACTCCGATT 57.115 26.923 6.44 0.00 38.64 3.34
163 164 8.885494 TTGAAATTTGAATTTGACTCCGATTT 57.115 26.923 6.44 0.00 38.64 2.17
164 165 8.519492 TGAAATTTGAATTTGACTCCGATTTC 57.481 30.769 6.44 0.00 38.64 2.17
165 166 8.140628 TGAAATTTGAATTTGACTCCGATTTCA 58.859 29.630 6.44 0.00 38.64 2.69
166 167 9.143631 GAAATTTGAATTTGACTCCGATTTCAT 57.856 29.630 6.44 0.00 38.64 2.57
167 168 8.693542 AATTTGAATTTGACTCCGATTTCATC 57.306 30.769 0.00 0.00 30.50 2.92
168 169 6.816134 TTGAATTTGACTCCGATTTCATCA 57.184 33.333 0.00 0.00 30.50 3.07
169 170 6.816134 TGAATTTGACTCCGATTTCATCAA 57.184 33.333 0.00 0.00 0.00 2.57
170 171 6.845302 TGAATTTGACTCCGATTTCATCAAG 58.155 36.000 0.00 0.00 31.34 3.02
171 172 6.430925 TGAATTTGACTCCGATTTCATCAAGT 59.569 34.615 0.00 0.00 31.34 3.16
172 173 5.611796 TTTGACTCCGATTTCATCAAGTG 57.388 39.130 0.00 0.00 31.34 3.16
173 174 3.599343 TGACTCCGATTTCATCAAGTGG 58.401 45.455 0.00 0.00 0.00 4.00
174 175 2.352960 GACTCCGATTTCATCAAGTGGC 59.647 50.000 0.00 0.00 0.00 5.01
175 176 2.290260 ACTCCGATTTCATCAAGTGGCA 60.290 45.455 0.00 0.00 0.00 4.92
176 177 2.749076 CTCCGATTTCATCAAGTGGCAA 59.251 45.455 0.00 0.00 0.00 4.52
177 178 3.153130 TCCGATTTCATCAAGTGGCAAA 58.847 40.909 0.00 0.00 0.00 3.68
178 179 3.763360 TCCGATTTCATCAAGTGGCAAAT 59.237 39.130 0.00 0.00 0.00 2.32
179 180 4.220382 TCCGATTTCATCAAGTGGCAAATT 59.780 37.500 0.00 0.00 0.00 1.82
180 181 4.327898 CCGATTTCATCAAGTGGCAAATTG 59.672 41.667 0.00 0.00 0.00 2.32
181 182 4.327898 CGATTTCATCAAGTGGCAAATTGG 59.672 41.667 0.66 0.00 0.00 3.16
182 183 2.747396 TCATCAAGTGGCAAATTGGC 57.253 45.000 12.92 12.92 44.03 4.52
183 184 2.250031 TCATCAAGTGGCAAATTGGCT 58.750 42.857 20.08 0.00 44.10 4.75
184 185 2.633967 TCATCAAGTGGCAAATTGGCTT 59.366 40.909 20.08 4.72 44.10 4.35
185 186 3.831333 TCATCAAGTGGCAAATTGGCTTA 59.169 39.130 20.08 0.00 44.10 3.09
186 187 4.282957 TCATCAAGTGGCAAATTGGCTTAA 59.717 37.500 20.08 0.00 44.10 1.85
187 188 4.888326 TCAAGTGGCAAATTGGCTTAAT 57.112 36.364 20.08 0.00 44.10 1.40
188 189 5.991933 TCAAGTGGCAAATTGGCTTAATA 57.008 34.783 20.08 0.00 44.10 0.98
189 190 6.352016 TCAAGTGGCAAATTGGCTTAATAA 57.648 33.333 20.08 0.00 44.10 1.40
190 191 6.763355 TCAAGTGGCAAATTGGCTTAATAAA 58.237 32.000 20.08 0.00 44.10 1.40
191 192 7.220030 TCAAGTGGCAAATTGGCTTAATAAAA 58.780 30.769 20.08 0.00 44.10 1.52
192 193 7.172361 TCAAGTGGCAAATTGGCTTAATAAAAC 59.828 33.333 20.08 7.57 44.10 2.43
193 194 5.637387 AGTGGCAAATTGGCTTAATAAAACG 59.363 36.000 20.08 0.00 44.10 3.60
194 195 5.407084 GTGGCAAATTGGCTTAATAAAACGT 59.593 36.000 20.08 0.00 44.10 3.99
195 196 5.406780 TGGCAAATTGGCTTAATAAAACGTG 59.593 36.000 20.08 0.00 44.10 4.49
196 197 5.635700 GGCAAATTGGCTTAATAAAACGTGA 59.364 36.000 12.54 0.00 40.14 4.35
197 198 6.312672 GGCAAATTGGCTTAATAAAACGTGAT 59.687 34.615 12.54 0.00 40.14 3.06
198 199 7.172757 GCAAATTGGCTTAATAAAACGTGATG 58.827 34.615 0.00 0.00 0.00 3.07
199 200 7.062839 GCAAATTGGCTTAATAAAACGTGATGA 59.937 33.333 0.00 0.00 0.00 2.92
200 201 8.372521 CAAATTGGCTTAATAAAACGTGATGAC 58.627 33.333 0.00 0.00 0.00 3.06
201 202 6.561737 TTGGCTTAATAAAACGTGATGACA 57.438 33.333 0.00 0.00 0.00 3.58
202 203 6.751514 TGGCTTAATAAAACGTGATGACAT 57.248 33.333 0.00 0.00 0.00 3.06
203 204 6.550843 TGGCTTAATAAAACGTGATGACATG 58.449 36.000 0.00 0.00 38.80 3.21
204 205 5.971202 GGCTTAATAAAACGTGATGACATGG 59.029 40.000 0.00 0.00 37.35 3.66
205 206 6.404293 GGCTTAATAAAACGTGATGACATGGT 60.404 38.462 0.00 0.00 37.35 3.55
206 207 7.201661 GGCTTAATAAAACGTGATGACATGGTA 60.202 37.037 0.00 0.00 37.35 3.25
207 208 7.638683 GCTTAATAAAACGTGATGACATGGTAC 59.361 37.037 0.00 0.00 37.35 3.34
223 224 3.805762 TGGTACATTAGGGTGGGTTACT 58.194 45.455 0.00 0.00 0.00 2.24
224 225 3.520317 TGGTACATTAGGGTGGGTTACTG 59.480 47.826 0.00 0.00 0.00 2.74
225 226 3.520721 GGTACATTAGGGTGGGTTACTGT 59.479 47.826 0.00 0.00 0.00 3.55
226 227 4.716287 GGTACATTAGGGTGGGTTACTGTA 59.284 45.833 0.00 0.00 0.00 2.74
227 228 5.163374 GGTACATTAGGGTGGGTTACTGTAG 60.163 48.000 0.00 0.00 0.00 2.74
228 229 3.199289 ACATTAGGGTGGGTTACTGTAGC 59.801 47.826 0.00 0.00 0.00 3.58
229 230 2.934263 TAGGGTGGGTTACTGTAGCT 57.066 50.000 1.71 0.00 0.00 3.32
230 231 2.040342 AGGGTGGGTTACTGTAGCTT 57.960 50.000 0.00 0.00 0.00 3.74
231 232 3.194904 AGGGTGGGTTACTGTAGCTTA 57.805 47.619 0.00 0.00 0.00 3.09
232 233 3.523792 AGGGTGGGTTACTGTAGCTTAA 58.476 45.455 0.00 0.00 0.00 1.85
233 234 4.109320 AGGGTGGGTTACTGTAGCTTAAT 58.891 43.478 0.00 0.00 0.00 1.40
234 235 4.538891 AGGGTGGGTTACTGTAGCTTAATT 59.461 41.667 0.00 0.00 0.00 1.40
235 236 5.727766 AGGGTGGGTTACTGTAGCTTAATTA 59.272 40.000 0.00 0.00 0.00 1.40
236 237 6.388983 AGGGTGGGTTACTGTAGCTTAATTAT 59.611 38.462 0.00 0.00 0.00 1.28
237 238 6.709397 GGGTGGGTTACTGTAGCTTAATTATC 59.291 42.308 0.00 0.00 0.00 1.75
238 239 6.709397 GGTGGGTTACTGTAGCTTAATTATCC 59.291 42.308 0.00 0.00 0.00 2.59
239 240 6.423001 GTGGGTTACTGTAGCTTAATTATCCG 59.577 42.308 0.00 0.00 0.00 4.18
240 241 5.930569 GGGTTACTGTAGCTTAATTATCCGG 59.069 44.000 0.00 0.00 0.00 5.14
241 242 5.930569 GGTTACTGTAGCTTAATTATCCGGG 59.069 44.000 0.00 0.00 0.00 5.73
242 243 6.463472 GGTTACTGTAGCTTAATTATCCGGGT 60.463 42.308 0.00 0.00 0.00 5.28
243 244 4.957296 ACTGTAGCTTAATTATCCGGGTG 58.043 43.478 0.00 0.00 0.00 4.61
244 245 4.407945 ACTGTAGCTTAATTATCCGGGTGT 59.592 41.667 0.00 0.00 0.00 4.16
245 246 4.952460 TGTAGCTTAATTATCCGGGTGTC 58.048 43.478 0.00 0.00 0.00 3.67
246 247 4.406326 TGTAGCTTAATTATCCGGGTGTCA 59.594 41.667 0.00 0.00 0.00 3.58
247 248 3.805207 AGCTTAATTATCCGGGTGTCAC 58.195 45.455 0.00 0.00 0.00 3.67
248 249 3.199071 AGCTTAATTATCCGGGTGTCACA 59.801 43.478 0.00 0.00 0.00 3.58
249 250 3.560068 GCTTAATTATCCGGGTGTCACAG 59.440 47.826 0.00 0.00 0.00 3.66
250 251 4.682320 GCTTAATTATCCGGGTGTCACAGA 60.682 45.833 0.00 0.00 0.00 3.41
251 252 3.543680 AATTATCCGGGTGTCACAGAG 57.456 47.619 0.00 0.00 0.00 3.35
252 253 1.191535 TTATCCGGGTGTCACAGAGG 58.808 55.000 0.00 4.89 0.00 3.69
253 254 0.686441 TATCCGGGTGTCACAGAGGG 60.686 60.000 0.00 0.20 0.00 4.30
254 255 3.706373 CCGGGTGTCACAGAGGGG 61.706 72.222 5.12 0.00 0.00 4.79
255 256 3.706373 CGGGTGTCACAGAGGGGG 61.706 72.222 5.12 0.00 0.00 5.40
256 257 2.529389 GGGTGTCACAGAGGGGGT 60.529 66.667 5.12 0.00 0.00 4.95
257 258 2.593956 GGGTGTCACAGAGGGGGTC 61.594 68.421 5.12 0.00 0.00 4.46
258 259 1.841556 GGTGTCACAGAGGGGGTCA 60.842 63.158 5.12 0.00 0.00 4.02
259 260 1.371558 GTGTCACAGAGGGGGTCAC 59.628 63.158 0.00 0.00 0.00 3.67
260 261 1.841556 TGTCACAGAGGGGGTCACC 60.842 63.158 0.00 0.00 39.11 4.02
261 262 1.841556 GTCACAGAGGGGGTCACCA 60.842 63.158 0.00 0.00 42.91 4.17
262 263 1.074090 TCACAGAGGGGGTCACCAA 60.074 57.895 0.00 0.00 42.91 3.67
263 264 0.475632 TCACAGAGGGGGTCACCAAT 60.476 55.000 0.00 0.00 42.91 3.16
264 265 0.322816 CACAGAGGGGGTCACCAATG 60.323 60.000 0.00 0.00 42.91 2.82
265 266 0.772124 ACAGAGGGGGTCACCAATGT 60.772 55.000 0.00 0.00 42.91 2.71
266 267 0.322816 CAGAGGGGGTCACCAATGTG 60.323 60.000 0.00 0.00 42.91 3.21
280 281 5.640732 CACCAATGTGAACATTAAGGTAGC 58.359 41.667 14.47 0.00 45.76 3.58
281 282 5.182950 CACCAATGTGAACATTAAGGTAGCA 59.817 40.000 14.47 0.00 45.76 3.49
282 283 5.772672 ACCAATGTGAACATTAAGGTAGCAA 59.227 36.000 13.66 0.00 44.10 3.91
283 284 6.437162 ACCAATGTGAACATTAAGGTAGCAAT 59.563 34.615 13.66 0.00 44.10 3.56
284 285 7.039082 ACCAATGTGAACATTAAGGTAGCAATT 60.039 33.333 13.66 0.00 44.10 2.32
285 286 7.276218 CCAATGTGAACATTAAGGTAGCAATTG 59.724 37.037 8.29 0.00 44.10 2.32
286 287 5.708948 TGTGAACATTAAGGTAGCAATTGC 58.291 37.500 23.05 23.05 42.49 3.56
287 288 5.242615 TGTGAACATTAAGGTAGCAATTGCA 59.757 36.000 30.89 14.94 45.16 4.08
288 289 6.071447 TGTGAACATTAAGGTAGCAATTGCAT 60.071 34.615 30.89 18.26 45.16 3.96
289 290 7.121907 TGTGAACATTAAGGTAGCAATTGCATA 59.878 33.333 30.89 17.29 45.16 3.14
290 291 7.645340 GTGAACATTAAGGTAGCAATTGCATAG 59.355 37.037 30.89 12.47 45.16 2.23
291 292 7.339212 TGAACATTAAGGTAGCAATTGCATAGT 59.661 33.333 30.89 13.77 45.16 2.12
292 293 7.645058 ACATTAAGGTAGCAATTGCATAGTT 57.355 32.000 30.89 19.86 45.16 2.24
293 294 8.066612 ACATTAAGGTAGCAATTGCATAGTTT 57.933 30.769 30.89 19.16 45.16 2.66
294 295 8.190784 ACATTAAGGTAGCAATTGCATAGTTTC 58.809 33.333 30.89 13.06 45.16 2.78
295 296 4.882671 AGGTAGCAATTGCATAGTTTCG 57.117 40.909 30.89 0.00 45.16 3.46
296 297 4.513442 AGGTAGCAATTGCATAGTTTCGA 58.487 39.130 30.89 3.00 45.16 3.71
297 298 4.332819 AGGTAGCAATTGCATAGTTTCGAC 59.667 41.667 30.89 13.52 45.16 4.20
298 299 4.094294 GGTAGCAATTGCATAGTTTCGACA 59.906 41.667 30.89 0.00 45.16 4.35
299 300 4.970662 AGCAATTGCATAGTTTCGACAT 57.029 36.364 30.89 3.64 45.16 3.06
300 301 4.665212 AGCAATTGCATAGTTTCGACATG 58.335 39.130 30.89 0.00 45.16 3.21
301 302 4.395854 AGCAATTGCATAGTTTCGACATGA 59.604 37.500 30.89 0.00 45.16 3.07
302 303 5.094812 GCAATTGCATAGTTTCGACATGAA 58.905 37.500 25.36 0.00 41.59 2.57
303 304 5.572511 GCAATTGCATAGTTTCGACATGAAA 59.427 36.000 25.36 0.00 41.59 2.69
304 305 6.254157 GCAATTGCATAGTTTCGACATGAAAT 59.746 34.615 25.36 0.00 43.66 2.17
305 306 7.431960 GCAATTGCATAGTTTCGACATGAAATA 59.568 33.333 25.36 0.00 43.66 1.40
313 314 3.735237 TCGACATGAAATAGGAGCTCC 57.265 47.619 26.22 26.22 0.00 4.70
314 315 2.365617 TCGACATGAAATAGGAGCTCCC 59.634 50.000 29.54 13.96 36.42 4.30
315 316 2.103094 CGACATGAAATAGGAGCTCCCA 59.897 50.000 29.54 17.52 37.41 4.37
316 317 3.432186 CGACATGAAATAGGAGCTCCCAA 60.432 47.826 29.54 18.33 37.41 4.12
317 318 4.133078 GACATGAAATAGGAGCTCCCAAG 58.867 47.826 29.54 17.80 37.41 3.61
318 319 3.117738 ACATGAAATAGGAGCTCCCAAGG 60.118 47.826 29.54 16.73 37.41 3.61
319 320 1.846439 TGAAATAGGAGCTCCCAAGGG 59.154 52.381 29.54 0.00 37.41 3.95
320 321 1.143889 GAAATAGGAGCTCCCAAGGGG 59.856 57.143 29.54 0.00 46.11 4.79
321 322 1.356494 AATAGGAGCTCCCAAGGGGC 61.356 60.000 29.54 7.84 43.94 5.80
322 323 2.277126 ATAGGAGCTCCCAAGGGGCT 62.277 60.000 29.54 7.98 43.94 5.19
324 325 4.168291 GAGCTCCCAAGGGGCTCG 62.168 72.222 19.24 6.59 43.94 5.03
327 328 3.801997 CTCCCAAGGGGCTCGCAT 61.802 66.667 5.08 0.00 43.94 4.73
328 329 2.366301 TCCCAAGGGGCTCGCATA 60.366 61.111 5.08 0.00 43.94 3.14
329 330 1.983119 CTCCCAAGGGGCTCGCATAA 61.983 60.000 5.08 0.00 43.94 1.90
330 331 1.823899 CCCAAGGGGCTCGCATAAC 60.824 63.158 0.00 0.00 35.35 1.89
331 332 2.180204 CCAAGGGGCTCGCATAACG 61.180 63.158 0.00 0.00 45.62 3.18
341 342 2.125269 GCATAACGACCACCGGCT 60.125 61.111 0.00 0.00 43.93 5.52
342 343 2.461110 GCATAACGACCACCGGCTG 61.461 63.158 0.00 0.00 43.93 4.85
343 344 1.216977 CATAACGACCACCGGCTGA 59.783 57.895 0.00 0.00 43.93 4.26
344 345 1.082117 CATAACGACCACCGGCTGAC 61.082 60.000 0.00 0.00 43.93 3.51
345 346 1.537814 ATAACGACCACCGGCTGACA 61.538 55.000 0.00 0.00 43.93 3.58
346 347 2.424705 TAACGACCACCGGCTGACAC 62.425 60.000 0.00 0.00 43.93 3.67
356 357 4.803426 GCTGACACCGAGGCCGAG 62.803 72.222 0.00 0.00 38.22 4.63
357 358 3.062466 CTGACACCGAGGCCGAGA 61.062 66.667 0.00 0.00 38.22 4.04
358 359 2.362503 TGACACCGAGGCCGAGAT 60.363 61.111 0.00 0.00 38.22 2.75
359 360 2.105128 GACACCGAGGCCGAGATG 59.895 66.667 0.00 0.00 38.22 2.90
360 361 2.680352 ACACCGAGGCCGAGATGT 60.680 61.111 0.00 0.00 38.22 3.06
361 362 2.202797 CACCGAGGCCGAGATGTG 60.203 66.667 0.00 0.00 38.22 3.21
362 363 2.680352 ACCGAGGCCGAGATGTGT 60.680 61.111 0.00 0.00 38.22 3.72
363 364 1.379443 ACCGAGGCCGAGATGTGTA 60.379 57.895 0.00 0.00 38.22 2.90
364 365 0.968901 ACCGAGGCCGAGATGTGTAA 60.969 55.000 0.00 0.00 38.22 2.41
365 366 0.389391 CCGAGGCCGAGATGTGTAAT 59.611 55.000 0.00 0.00 38.22 1.89
366 367 1.491670 CGAGGCCGAGATGTGTAATG 58.508 55.000 0.00 0.00 38.22 1.90
369 370 3.126831 GAGGCCGAGATGTGTAATGAAG 58.873 50.000 0.00 0.00 0.00 3.02
389 390 1.372004 CACGACAACGCCCGACTAA 60.372 57.895 0.00 0.00 43.96 2.24
422 423 4.215399 CCTCTCAGAACAGATATCGTCTCC 59.785 50.000 0.00 0.00 34.00 3.71
423 424 5.042463 TCTCAGAACAGATATCGTCTCCT 57.958 43.478 0.00 0.00 34.00 3.69
424 425 6.176014 TCTCAGAACAGATATCGTCTCCTA 57.824 41.667 0.00 0.00 34.00 2.94
557 559 0.110419 TTCGCGAGTGAAAAATGGCG 60.110 50.000 9.59 0.00 44.47 5.69
565 567 1.855360 GTGAAAAATGGCGCAACGAAA 59.145 42.857 10.83 0.00 0.00 3.46
573 575 2.166985 CGCAACGAAACGTCGGTC 59.833 61.111 0.00 0.00 46.84 4.79
592 600 3.004944 GGTCGGCCTCTAATTGTCTCTAG 59.995 52.174 0.00 0.00 0.00 2.43
734 742 6.400621 CGCATTCTGTGAGTATTAAACGACAA 60.401 38.462 0.00 0.00 0.00 3.18
794 811 6.741992 TGAACACCTTCAAGCATTATGTAG 57.258 37.500 0.00 0.00 33.20 2.74
896 913 9.884465 GATTTGATCTCGTATTTATTCCCTTTG 57.116 33.333 0.00 0.00 0.00 2.77
926 1057 9.547753 ACAAGATGTACTACATAAAGCCATAAG 57.452 33.333 1.45 0.00 39.27 1.73
966 1097 4.749310 ACGAGCCGAAGCCAGCAG 62.749 66.667 1.50 0.00 41.25 4.24
978 1109 0.813821 GCCAGCAGAAACTCAATCCC 59.186 55.000 0.00 0.00 0.00 3.85
1021 1152 2.588989 CAGCCAGGCTCCTCTTCC 59.411 66.667 12.53 0.00 36.40 3.46
1023 1154 2.690510 GCCAGGCTCCTCTTCCCT 60.691 66.667 3.29 0.00 0.00 4.20
1027 1158 1.284313 CAGGCTCCTCTTCCCTTTCT 58.716 55.000 0.00 0.00 0.00 2.52
1578 1748 2.961526 AGATCTTGCCGTACGTGATT 57.038 45.000 15.21 0.00 0.00 2.57
1602 1772 4.148825 AGGCAGACCGGTCGATGC 62.149 66.667 30.86 30.86 42.76 3.91
1651 1821 4.602995 TGACTTGTTTGTGCCGTTAAATC 58.397 39.130 0.00 0.00 0.00 2.17
1653 1823 3.634910 ACTTGTTTGTGCCGTTAAATCCT 59.365 39.130 0.00 0.00 0.00 3.24
1654 1824 3.634568 TGTTTGTGCCGTTAAATCCTG 57.365 42.857 0.00 0.00 0.00 3.86
1655 1825 2.952978 TGTTTGTGCCGTTAAATCCTGT 59.047 40.909 0.00 0.00 0.00 4.00
1659 1829 2.287909 TGTGCCGTTAAATCCTGTTTGC 60.288 45.455 0.00 0.00 0.00 3.68
1660 1830 2.030274 GTGCCGTTAAATCCTGTTTGCT 60.030 45.455 0.00 0.00 0.00 3.91
1667 1848 6.183360 CCGTTAAATCCTGTTTGCTTGCTATA 60.183 38.462 0.00 0.00 0.00 1.31
1684 1865 5.634118 TGCTATATTGGGATTTGCTTAGCT 58.366 37.500 5.60 0.00 33.66 3.32
1689 1870 7.693969 ATATTGGGATTTGCTTAGCTCATAC 57.306 36.000 5.60 0.00 0.00 2.39
1691 1872 4.708177 TGGGATTTGCTTAGCTCATACTC 58.292 43.478 5.60 0.00 0.00 2.59
1694 1875 5.012148 GGGATTTGCTTAGCTCATACTCCTA 59.988 44.000 5.60 0.00 0.00 2.94
1695 1876 6.296145 GGGATTTGCTTAGCTCATACTCCTAT 60.296 42.308 5.60 0.00 0.00 2.57
1696 1877 6.593382 GGATTTGCTTAGCTCATACTCCTATG 59.407 42.308 5.60 0.00 0.00 2.23
1698 1879 6.485830 TTGCTTAGCTCATACTCCTATGTT 57.514 37.500 5.60 0.00 32.76 2.71
1702 1949 6.644592 GCTTAGCTCATACTCCTATGTTCTTG 59.355 42.308 0.00 0.00 32.76 3.02
1743 2018 1.227380 CCCGCGAATGAGAAGGAGG 60.227 63.158 8.23 0.00 0.00 4.30
1746 2021 1.524849 GCGAATGAGAAGGAGGGGC 60.525 63.158 0.00 0.00 0.00 5.80
1782 2057 1.682854 CTGAAACTGGCAAGCTCCAAA 59.317 47.619 0.00 0.00 35.36 3.28
1791 2066 0.883833 CAAGCTCCAAAGGACGCAAT 59.116 50.000 0.00 0.00 31.57 3.56
1792 2067 2.083774 CAAGCTCCAAAGGACGCAATA 58.916 47.619 0.00 0.00 31.57 1.90
1900 2184 3.777106 TGTCATCTTCTGCTTGTCCTT 57.223 42.857 0.00 0.00 0.00 3.36
1916 2200 9.733556 TGCTTGTCCTTAATACAGAGATTTTTA 57.266 29.630 0.00 0.00 0.00 1.52
1966 2253 1.221523 AGGATCTCTAGCACATCCCCA 59.778 52.381 9.62 0.00 37.41 4.96
1969 2256 3.495806 GGATCTCTAGCACATCCCCAAAG 60.496 52.174 0.00 0.00 31.31 2.77
1970 2257 2.551270 TCTCTAGCACATCCCCAAAGT 58.449 47.619 0.00 0.00 0.00 2.66
1973 2260 4.082125 CTCTAGCACATCCCCAAAGTTTT 58.918 43.478 0.00 0.00 0.00 2.43
1974 2261 4.479158 TCTAGCACATCCCCAAAGTTTTT 58.521 39.130 0.00 0.00 0.00 1.94
1995 2282 4.932789 TGCGAGTTAGCACATCCC 57.067 55.556 0.00 0.00 42.92 3.85
1996 2283 1.220749 TGCGAGTTAGCACATCCCC 59.779 57.895 0.00 0.00 42.92 4.81
1997 2284 1.523938 GCGAGTTAGCACATCCCCC 60.524 63.158 0.00 0.00 37.05 5.40
1998 2285 1.904771 CGAGTTAGCACATCCCCCA 59.095 57.895 0.00 0.00 0.00 4.96
1999 2286 0.251916 CGAGTTAGCACATCCCCCAA 59.748 55.000 0.00 0.00 0.00 4.12
2000 2287 1.339631 CGAGTTAGCACATCCCCCAAA 60.340 52.381 0.00 0.00 0.00 3.28
2001 2288 2.369394 GAGTTAGCACATCCCCCAAAG 58.631 52.381 0.00 0.00 0.00 2.77
2012 2299 1.364328 TCCCCCAAAGTTATGCCCAAT 59.636 47.619 0.00 0.00 0.00 3.16
2067 2354 4.820744 CCACTTGGCCGATGGGGG 62.821 72.222 11.13 0.00 35.78 5.40
2112 2399 0.673437 CGTGCATTTGTTTGGGAGGT 59.327 50.000 0.00 0.00 0.00 3.85
2187 2477 9.553064 TTAACTAATTTGCATTTTTCCATGTGT 57.447 25.926 0.00 0.00 0.00 3.72
2188 2478 7.424227 ACTAATTTGCATTTTTCCATGTGTG 57.576 32.000 0.00 0.00 0.00 3.82
2214 2504 4.953579 TGGGGTATCTTTAGCATTTTGGTC 59.046 41.667 0.00 0.00 0.00 4.02
2220 2510 7.068716 GGTATCTTTAGCATTTTGGTCCAGATT 59.931 37.037 0.00 0.00 32.42 2.40
2223 2513 9.866655 ATCTTTAGCATTTTGGTCCAGATTATA 57.133 29.630 0.00 0.00 28.23 0.98
2230 2520 8.034804 GCATTTTGGTCCAGATTATAGTTTGTT 58.965 33.333 0.00 0.00 0.00 2.83
2304 2596 1.923356 ATCAGTGAAAAACCGGCCAT 58.077 45.000 0.00 0.00 0.00 4.40
2426 2722 4.402155 CACATGGGTTGCATGGTTAACTAT 59.598 41.667 5.42 1.44 34.56 2.12
2469 2767 3.610040 TTAGATGCATCTGTGAACCGT 57.390 42.857 34.48 11.51 37.76 4.83
2539 2837 1.242076 GCATGGCTGCCGATTTATCT 58.758 50.000 14.98 0.00 42.88 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.303333 TCCCCTGGAAACAATTAAAGTGAAC 59.697 40.000 0.00 0.00 42.06 3.18
1 2 5.459505 TCCCCTGGAAACAATTAAAGTGAA 58.540 37.500 0.00 0.00 42.06 3.18
2 3 5.068215 TCCCCTGGAAACAATTAAAGTGA 57.932 39.130 0.00 0.00 42.06 3.41
3 4 5.799827 TTCCCCTGGAAACAATTAAAGTG 57.200 39.130 0.00 0.00 38.93 3.16
15 16 5.909760 TGGATTTTTAGATTTCCCCTGGAA 58.090 37.500 0.00 0.00 40.27 3.53
16 17 5.544441 TGGATTTTTAGATTTCCCCTGGA 57.456 39.130 0.00 0.00 0.00 3.86
17 18 6.813293 AATGGATTTTTAGATTTCCCCTGG 57.187 37.500 0.00 0.00 0.00 4.45
34 35 9.745018 CCATGTAGGAACTATCATTTAATGGAT 57.255 33.333 5.02 0.97 45.60 3.41
35 36 8.723365 ACCATGTAGGAACTATCATTTAATGGA 58.277 33.333 5.02 0.00 45.60 3.41
36 37 8.924511 ACCATGTAGGAACTATCATTTAATGG 57.075 34.615 5.02 0.00 45.60 3.16
39 40 9.841295 GGTTACCATGTAGGAACTATCATTTAA 57.159 33.333 0.00 0.00 45.60 1.52
40 41 8.994500 TGGTTACCATGTAGGAACTATCATTTA 58.006 33.333 0.00 0.00 45.60 1.40
41 42 7.773690 GTGGTTACCATGTAGGAACTATCATTT 59.226 37.037 7.58 0.00 38.63 2.32
42 43 7.127339 AGTGGTTACCATGTAGGAACTATCATT 59.873 37.037 7.58 0.00 38.63 2.57
43 44 6.615726 AGTGGTTACCATGTAGGAACTATCAT 59.384 38.462 7.58 0.00 38.63 2.45
44 45 5.962031 AGTGGTTACCATGTAGGAACTATCA 59.038 40.000 7.58 0.00 38.63 2.15
45 46 6.481434 AGTGGTTACCATGTAGGAACTATC 57.519 41.667 7.58 0.00 38.63 2.08
46 47 6.886178 AAGTGGTTACCATGTAGGAACTAT 57.114 37.500 7.58 0.00 38.63 2.12
47 48 6.955851 ACTAAGTGGTTACCATGTAGGAACTA 59.044 38.462 20.85 0.00 41.22 2.24
48 49 5.783875 ACTAAGTGGTTACCATGTAGGAACT 59.216 40.000 20.85 5.46 41.22 3.01
49 50 5.873164 CACTAAGTGGTTACCATGTAGGAAC 59.127 44.000 20.85 3.52 41.22 3.62
50 51 5.781306 TCACTAAGTGGTTACCATGTAGGAA 59.219 40.000 20.85 10.69 35.28 3.36
51 52 5.335261 TCACTAAGTGGTTACCATGTAGGA 58.665 41.667 20.85 14.77 35.28 2.94
52 53 5.670792 TCACTAAGTGGTTACCATGTAGG 57.329 43.478 20.85 13.39 35.28 3.18
53 54 9.832445 AATATTCACTAAGTGGTTACCATGTAG 57.168 33.333 7.58 14.03 35.28 2.74
55 56 9.528489 AAAATATTCACTAAGTGGTTACCATGT 57.472 29.630 7.58 0.83 35.28 3.21
57 58 9.747898 TGAAAATATTCACTAAGTGGTTACCAT 57.252 29.630 7.58 0.00 40.59 3.55
58 59 9.575868 TTGAAAATATTCACTAAGTGGTTACCA 57.424 29.630 0.00 0.00 45.01 3.25
59 60 9.836076 GTTGAAAATATTCACTAAGTGGTTACC 57.164 33.333 0.00 0.00 45.01 2.85
60 61 9.836076 GGTTGAAAATATTCACTAAGTGGTTAC 57.164 33.333 0.00 0.00 45.01 2.50
61 62 9.016438 GGGTTGAAAATATTCACTAAGTGGTTA 57.984 33.333 0.00 0.00 45.01 2.85
62 63 7.507616 TGGGTTGAAAATATTCACTAAGTGGTT 59.492 33.333 0.00 0.00 45.01 3.67
63 64 7.007723 TGGGTTGAAAATATTCACTAAGTGGT 58.992 34.615 0.00 0.00 45.01 4.16
64 65 7.461182 TGGGTTGAAAATATTCACTAAGTGG 57.539 36.000 0.00 0.00 45.01 4.00
65 66 8.356657 TGTTGGGTTGAAAATATTCACTAAGTG 58.643 33.333 0.00 0.00 45.01 3.16
66 67 8.472007 TGTTGGGTTGAAAATATTCACTAAGT 57.528 30.769 0.00 0.00 45.01 2.24
67 68 9.757227 TTTGTTGGGTTGAAAATATTCACTAAG 57.243 29.630 0.00 0.00 45.01 2.18
68 69 9.535878 GTTTGTTGGGTTGAAAATATTCACTAA 57.464 29.630 0.00 0.00 45.01 2.24
69 70 8.696374 TGTTTGTTGGGTTGAAAATATTCACTA 58.304 29.630 0.00 0.00 45.01 2.74
70 71 7.560368 TGTTTGTTGGGTTGAAAATATTCACT 58.440 30.769 0.00 0.00 45.01 3.41
71 72 7.778470 TGTTTGTTGGGTTGAAAATATTCAC 57.222 32.000 0.00 0.00 45.01 3.18
72 73 8.970859 AATGTTTGTTGGGTTGAAAATATTCA 57.029 26.923 0.00 0.00 43.70 2.57
78 79 9.846248 CAATTAAAATGTTTGTTGGGTTGAAAA 57.154 25.926 0.00 0.00 0.00 2.29
79 80 9.231297 TCAATTAAAATGTTTGTTGGGTTGAAA 57.769 25.926 0.00 0.00 0.00 2.69
80 81 8.669243 GTCAATTAAAATGTTTGTTGGGTTGAA 58.331 29.630 0.00 0.00 0.00 2.69
81 82 7.824289 TGTCAATTAAAATGTTTGTTGGGTTGA 59.176 29.630 0.00 0.00 0.00 3.18
82 83 7.978982 TGTCAATTAAAATGTTTGTTGGGTTG 58.021 30.769 0.00 0.00 0.00 3.77
83 84 7.826744 ACTGTCAATTAAAATGTTTGTTGGGTT 59.173 29.630 0.00 0.00 0.00 4.11
84 85 7.334858 ACTGTCAATTAAAATGTTTGTTGGGT 58.665 30.769 0.00 0.00 0.00 4.51
85 86 7.784633 ACTGTCAATTAAAATGTTTGTTGGG 57.215 32.000 0.00 0.00 0.00 4.12
134 135 9.973450 TCGGAGTCAAATTCAAATTTCAAATAA 57.027 25.926 0.00 0.00 36.52 1.40
136 137 9.492973 AATCGGAGTCAAATTCAAATTTCAAAT 57.507 25.926 0.00 0.00 36.52 2.32
137 138 8.885494 AATCGGAGTCAAATTCAAATTTCAAA 57.115 26.923 0.00 0.00 36.52 2.69
138 139 8.885494 AAATCGGAGTCAAATTCAAATTTCAA 57.115 26.923 0.00 0.00 36.52 2.69
139 140 8.140628 TGAAATCGGAGTCAAATTCAAATTTCA 58.859 29.630 0.00 0.00 36.52 2.69
140 141 8.519492 TGAAATCGGAGTCAAATTCAAATTTC 57.481 30.769 0.00 0.00 36.52 2.17
141 142 9.143631 GATGAAATCGGAGTCAAATTCAAATTT 57.856 29.630 0.00 0.00 34.51 1.82
142 143 8.693542 GATGAAATCGGAGTCAAATTCAAATT 57.306 30.769 0.00 0.00 31.13 1.82
159 160 4.093850 GCCAATTTGCCACTTGATGAAATC 59.906 41.667 0.00 0.00 45.83 2.17
160 161 4.004982 GCCAATTTGCCACTTGATGAAAT 58.995 39.130 0.00 0.00 0.00 2.17
161 162 3.071312 AGCCAATTTGCCACTTGATGAAA 59.929 39.130 0.00 0.00 0.00 2.69
162 163 2.633967 AGCCAATTTGCCACTTGATGAA 59.366 40.909 0.00 0.00 0.00 2.57
163 164 2.250031 AGCCAATTTGCCACTTGATGA 58.750 42.857 0.00 0.00 0.00 2.92
164 165 2.754946 AGCCAATTTGCCACTTGATG 57.245 45.000 0.00 0.00 0.00 3.07
165 166 4.888326 TTAAGCCAATTTGCCACTTGAT 57.112 36.364 0.00 0.00 0.00 2.57
166 167 4.888326 ATTAAGCCAATTTGCCACTTGA 57.112 36.364 0.00 1.87 0.00 3.02
167 168 7.297391 GTTTTATTAAGCCAATTTGCCACTTG 58.703 34.615 0.00 0.00 0.00 3.16
168 169 6.147000 CGTTTTATTAAGCCAATTTGCCACTT 59.853 34.615 0.00 0.00 0.00 3.16
169 170 5.637387 CGTTTTATTAAGCCAATTTGCCACT 59.363 36.000 0.00 0.00 0.00 4.00
170 171 5.407084 ACGTTTTATTAAGCCAATTTGCCAC 59.593 36.000 0.00 0.00 0.00 5.01
171 172 5.406780 CACGTTTTATTAAGCCAATTTGCCA 59.593 36.000 0.00 0.00 0.00 4.92
172 173 5.635700 TCACGTTTTATTAAGCCAATTTGCC 59.364 36.000 0.00 0.00 0.00 4.52
173 174 6.698359 TCACGTTTTATTAAGCCAATTTGC 57.302 33.333 0.00 0.00 0.00 3.68
174 175 8.372521 GTCATCACGTTTTATTAAGCCAATTTG 58.627 33.333 0.00 0.00 0.00 2.32
175 176 8.085296 TGTCATCACGTTTTATTAAGCCAATTT 58.915 29.630 0.00 0.00 0.00 1.82
176 177 7.598278 TGTCATCACGTTTTATTAAGCCAATT 58.402 30.769 0.00 0.00 0.00 2.32
177 178 7.151999 TGTCATCACGTTTTATTAAGCCAAT 57.848 32.000 0.00 0.00 0.00 3.16
178 179 6.561737 TGTCATCACGTTTTATTAAGCCAA 57.438 33.333 0.00 0.00 0.00 4.52
179 180 6.404184 CCATGTCATCACGTTTTATTAAGCCA 60.404 38.462 0.00 0.00 0.00 4.75
180 181 5.971202 CCATGTCATCACGTTTTATTAAGCC 59.029 40.000 0.00 0.00 0.00 4.35
181 182 6.551736 ACCATGTCATCACGTTTTATTAAGC 58.448 36.000 0.00 0.00 0.00 3.09
182 183 8.661257 TGTACCATGTCATCACGTTTTATTAAG 58.339 33.333 0.00 0.00 0.00 1.85
183 184 8.549338 TGTACCATGTCATCACGTTTTATTAA 57.451 30.769 0.00 0.00 0.00 1.40
184 185 8.725405 ATGTACCATGTCATCACGTTTTATTA 57.275 30.769 0.00 0.00 0.00 0.98
185 186 7.624360 ATGTACCATGTCATCACGTTTTATT 57.376 32.000 0.00 0.00 0.00 1.40
186 187 7.624360 AATGTACCATGTCATCACGTTTTAT 57.376 32.000 0.00 0.00 0.00 1.40
187 188 7.279090 CCTAATGTACCATGTCATCACGTTTTA 59.721 37.037 0.00 0.00 0.00 1.52
188 189 5.957842 AATGTACCATGTCATCACGTTTT 57.042 34.783 0.00 0.00 0.00 2.43
189 190 5.584649 CCTAATGTACCATGTCATCACGTTT 59.415 40.000 0.00 0.00 0.00 3.60
190 191 5.116180 CCTAATGTACCATGTCATCACGTT 58.884 41.667 0.00 0.00 0.00 3.99
191 192 4.442893 CCCTAATGTACCATGTCATCACGT 60.443 45.833 0.00 0.00 0.00 4.49
192 193 4.058124 CCCTAATGTACCATGTCATCACG 58.942 47.826 0.00 0.00 0.00 4.35
193 194 4.816385 CACCCTAATGTACCATGTCATCAC 59.184 45.833 0.00 0.00 0.00 3.06
194 195 4.141505 CCACCCTAATGTACCATGTCATCA 60.142 45.833 0.00 0.00 0.00 3.07
195 196 4.389374 CCACCCTAATGTACCATGTCATC 58.611 47.826 0.00 0.00 0.00 2.92
196 197 3.138283 CCCACCCTAATGTACCATGTCAT 59.862 47.826 0.00 0.00 0.00 3.06
197 198 2.507886 CCCACCCTAATGTACCATGTCA 59.492 50.000 0.00 0.00 0.00 3.58
198 199 2.508300 ACCCACCCTAATGTACCATGTC 59.492 50.000 0.00 0.00 0.00 3.06
199 200 2.568979 ACCCACCCTAATGTACCATGT 58.431 47.619 0.00 0.00 0.00 3.21
200 201 3.662759 AACCCACCCTAATGTACCATG 57.337 47.619 0.00 0.00 0.00 3.66
201 202 4.165372 CAGTAACCCACCCTAATGTACCAT 59.835 45.833 0.00 0.00 0.00 3.55
202 203 3.520317 CAGTAACCCACCCTAATGTACCA 59.480 47.826 0.00 0.00 0.00 3.25
203 204 3.520721 ACAGTAACCCACCCTAATGTACC 59.479 47.826 0.00 0.00 0.00 3.34
204 205 4.831674 ACAGTAACCCACCCTAATGTAC 57.168 45.455 0.00 0.00 0.00 2.90
205 206 4.406649 GCTACAGTAACCCACCCTAATGTA 59.593 45.833 0.00 0.00 29.84 2.29
206 207 3.199289 GCTACAGTAACCCACCCTAATGT 59.801 47.826 0.00 0.00 31.78 2.71
207 208 3.454812 AGCTACAGTAACCCACCCTAATG 59.545 47.826 0.00 0.00 0.00 1.90
208 209 3.732595 AGCTACAGTAACCCACCCTAAT 58.267 45.455 0.00 0.00 0.00 1.73
209 210 3.194904 AGCTACAGTAACCCACCCTAA 57.805 47.619 0.00 0.00 0.00 2.69
210 211 2.934263 AGCTACAGTAACCCACCCTA 57.066 50.000 0.00 0.00 0.00 3.53
211 212 2.040342 AAGCTACAGTAACCCACCCT 57.960 50.000 0.00 0.00 0.00 4.34
212 213 3.986996 TTAAGCTACAGTAACCCACCC 57.013 47.619 0.00 0.00 0.00 4.61
213 214 6.709397 GGATAATTAAGCTACAGTAACCCACC 59.291 42.308 0.00 0.00 0.00 4.61
214 215 6.423001 CGGATAATTAAGCTACAGTAACCCAC 59.577 42.308 0.00 0.00 0.00 4.61
215 216 6.463331 CCGGATAATTAAGCTACAGTAACCCA 60.463 42.308 0.00 0.00 0.00 4.51
216 217 5.930569 CCGGATAATTAAGCTACAGTAACCC 59.069 44.000 0.00 0.00 0.00 4.11
217 218 5.930569 CCCGGATAATTAAGCTACAGTAACC 59.069 44.000 0.73 0.00 0.00 2.85
218 219 6.423001 CACCCGGATAATTAAGCTACAGTAAC 59.577 42.308 0.73 0.00 0.00 2.50
219 220 6.098695 ACACCCGGATAATTAAGCTACAGTAA 59.901 38.462 0.73 0.00 0.00 2.24
220 221 5.599656 ACACCCGGATAATTAAGCTACAGTA 59.400 40.000 0.73 0.00 0.00 2.74
221 222 4.407945 ACACCCGGATAATTAAGCTACAGT 59.592 41.667 0.73 0.00 0.00 3.55
222 223 4.957296 ACACCCGGATAATTAAGCTACAG 58.043 43.478 0.73 0.00 0.00 2.74
223 224 4.406326 TGACACCCGGATAATTAAGCTACA 59.594 41.667 0.73 0.00 0.00 2.74
224 225 4.748600 GTGACACCCGGATAATTAAGCTAC 59.251 45.833 0.73 0.00 0.00 3.58
225 226 4.406326 TGTGACACCCGGATAATTAAGCTA 59.594 41.667 0.73 0.00 0.00 3.32
226 227 3.199071 TGTGACACCCGGATAATTAAGCT 59.801 43.478 0.73 0.00 0.00 3.74
227 228 3.537580 TGTGACACCCGGATAATTAAGC 58.462 45.455 0.73 0.00 0.00 3.09
228 229 5.018539 TCTGTGACACCCGGATAATTAAG 57.981 43.478 0.73 0.00 0.00 1.85
229 230 4.141801 CCTCTGTGACACCCGGATAATTAA 60.142 45.833 0.73 0.00 0.00 1.40
230 231 3.386726 CCTCTGTGACACCCGGATAATTA 59.613 47.826 0.73 0.00 0.00 1.40
231 232 2.170607 CCTCTGTGACACCCGGATAATT 59.829 50.000 0.73 0.00 0.00 1.40
232 233 1.762957 CCTCTGTGACACCCGGATAAT 59.237 52.381 0.73 0.00 0.00 1.28
233 234 1.191535 CCTCTGTGACACCCGGATAA 58.808 55.000 0.73 0.00 0.00 1.75
234 235 0.686441 CCCTCTGTGACACCCGGATA 60.686 60.000 0.73 0.00 0.00 2.59
235 236 1.990060 CCCTCTGTGACACCCGGAT 60.990 63.158 0.73 0.00 0.00 4.18
236 237 2.603473 CCCTCTGTGACACCCGGA 60.603 66.667 0.73 0.00 0.00 5.14
237 238 3.706373 CCCCTCTGTGACACCCGG 61.706 72.222 2.45 0.00 0.00 5.73
238 239 3.706373 CCCCCTCTGTGACACCCG 61.706 72.222 2.45 0.00 0.00 5.28
239 240 2.529389 ACCCCCTCTGTGACACCC 60.529 66.667 2.45 0.00 0.00 4.61
240 241 1.841556 TGACCCCCTCTGTGACACC 60.842 63.158 2.45 0.00 0.00 4.16
241 242 1.371558 GTGACCCCCTCTGTGACAC 59.628 63.158 0.00 0.00 0.00 3.67
242 243 1.841556 GGTGACCCCCTCTGTGACA 60.842 63.158 0.00 0.00 0.00 3.58
243 244 1.415672 TTGGTGACCCCCTCTGTGAC 61.416 60.000 0.00 0.00 0.00 3.67
244 245 0.475632 ATTGGTGACCCCCTCTGTGA 60.476 55.000 0.00 0.00 0.00 3.58
245 246 0.322816 CATTGGTGACCCCCTCTGTG 60.323 60.000 0.00 0.00 0.00 3.66
246 247 0.772124 ACATTGGTGACCCCCTCTGT 60.772 55.000 0.00 0.00 0.00 3.41
247 248 2.078452 ACATTGGTGACCCCCTCTG 58.922 57.895 0.00 0.00 0.00 3.35
248 249 4.690153 ACATTGGTGACCCCCTCT 57.310 55.556 0.00 0.00 0.00 3.69
257 258 5.182950 TGCTACCTTAATGTTCACATTGGTG 59.817 40.000 18.49 12.24 45.34 4.17
258 259 5.321102 TGCTACCTTAATGTTCACATTGGT 58.679 37.500 14.30 14.93 45.34 3.67
259 260 5.895636 TGCTACCTTAATGTTCACATTGG 57.104 39.130 14.30 10.50 45.34 3.16
260 261 7.201461 GCAATTGCTACCTTAATGTTCACATTG 60.201 37.037 23.21 1.95 41.18 2.82
261 262 6.813152 GCAATTGCTACCTTAATGTTCACATT 59.187 34.615 23.21 10.01 42.45 2.71
262 263 6.071447 TGCAATTGCTACCTTAATGTTCACAT 60.071 34.615 29.37 0.00 42.66 3.21
263 264 5.242615 TGCAATTGCTACCTTAATGTTCACA 59.757 36.000 29.37 1.54 42.66 3.58
264 265 5.708948 TGCAATTGCTACCTTAATGTTCAC 58.291 37.500 29.37 0.00 42.66 3.18
265 266 5.973899 TGCAATTGCTACCTTAATGTTCA 57.026 34.783 29.37 2.61 42.66 3.18
266 267 7.707104 ACTATGCAATTGCTACCTTAATGTTC 58.293 34.615 29.37 0.00 42.66 3.18
267 268 7.645058 ACTATGCAATTGCTACCTTAATGTT 57.355 32.000 29.37 3.55 42.66 2.71
268 269 7.645058 AACTATGCAATTGCTACCTTAATGT 57.355 32.000 29.37 12.69 42.66 2.71
269 270 7.376866 CGAAACTATGCAATTGCTACCTTAATG 59.623 37.037 29.37 10.22 42.66 1.90
270 271 7.282224 TCGAAACTATGCAATTGCTACCTTAAT 59.718 33.333 29.37 15.72 42.66 1.40
271 272 6.596106 TCGAAACTATGCAATTGCTACCTTAA 59.404 34.615 29.37 9.35 42.66 1.85
272 273 6.036735 GTCGAAACTATGCAATTGCTACCTTA 59.963 38.462 29.37 10.10 42.66 2.69
273 274 4.941263 TCGAAACTATGCAATTGCTACCTT 59.059 37.500 29.37 16.30 42.66 3.50
274 275 4.332819 GTCGAAACTATGCAATTGCTACCT 59.667 41.667 29.37 14.58 42.66 3.08
275 276 4.094294 TGTCGAAACTATGCAATTGCTACC 59.906 41.667 29.37 11.46 42.66 3.18
276 277 5.216566 TGTCGAAACTATGCAATTGCTAC 57.783 39.130 29.37 13.75 42.66 3.58
277 278 5.584251 TCATGTCGAAACTATGCAATTGCTA 59.416 36.000 29.37 16.96 42.66 3.49
278 279 4.395854 TCATGTCGAAACTATGCAATTGCT 59.604 37.500 29.37 17.65 42.66 3.91
279 280 4.661125 TCATGTCGAAACTATGCAATTGC 58.339 39.130 23.69 23.69 42.50 3.56
280 281 7.745022 ATTTCATGTCGAAACTATGCAATTG 57.255 32.000 0.00 0.00 46.22 2.32
281 282 8.131100 CCTATTTCATGTCGAAACTATGCAATT 58.869 33.333 0.00 0.00 46.22 2.32
282 283 7.498900 TCCTATTTCATGTCGAAACTATGCAAT 59.501 33.333 0.00 0.00 46.22 3.56
283 284 6.821160 TCCTATTTCATGTCGAAACTATGCAA 59.179 34.615 0.00 0.00 46.22 4.08
284 285 6.345298 TCCTATTTCATGTCGAAACTATGCA 58.655 36.000 0.00 0.00 46.22 3.96
285 286 6.564873 GCTCCTATTTCATGTCGAAACTATGC 60.565 42.308 0.00 0.00 46.22 3.14
286 287 6.703607 AGCTCCTATTTCATGTCGAAACTATG 59.296 38.462 0.00 0.00 46.22 2.23
287 288 6.821388 AGCTCCTATTTCATGTCGAAACTAT 58.179 36.000 0.00 0.00 46.22 2.12
288 289 6.222038 AGCTCCTATTTCATGTCGAAACTA 57.778 37.500 0.00 0.00 46.22 2.24
289 290 5.091261 AGCTCCTATTTCATGTCGAAACT 57.909 39.130 0.00 0.00 46.22 2.66
290 291 4.271291 GGAGCTCCTATTTCATGTCGAAAC 59.729 45.833 26.25 0.00 46.22 2.78
291 292 4.683400 GGGAGCTCCTATTTCATGTCGAAA 60.683 45.833 31.36 0.00 40.98 3.46
292 293 3.181465 GGGAGCTCCTATTTCATGTCGAA 60.181 47.826 31.36 0.00 35.95 3.71
293 294 2.365617 GGGAGCTCCTATTTCATGTCGA 59.634 50.000 31.36 0.00 35.95 4.20
294 295 2.103094 TGGGAGCTCCTATTTCATGTCG 59.897 50.000 31.36 0.00 36.20 4.35
295 296 3.845781 TGGGAGCTCCTATTTCATGTC 57.154 47.619 31.36 11.71 36.20 3.06
296 297 3.117738 CCTTGGGAGCTCCTATTTCATGT 60.118 47.826 31.36 0.00 36.20 3.21
297 298 3.484407 CCTTGGGAGCTCCTATTTCATG 58.516 50.000 31.36 20.24 36.20 3.07
298 299 2.444766 CCCTTGGGAGCTCCTATTTCAT 59.555 50.000 31.36 0.00 36.20 2.57
299 300 1.846439 CCCTTGGGAGCTCCTATTTCA 59.154 52.381 31.36 17.93 36.20 2.69
300 301 2.647683 CCCTTGGGAGCTCCTATTTC 57.352 55.000 31.36 15.41 36.20 2.17
313 314 2.180204 CGTTATGCGAGCCCCTTGG 61.180 63.158 0.00 0.00 44.77 3.61
314 315 1.153449 TCGTTATGCGAGCCCCTTG 60.153 57.895 0.00 0.00 45.68 3.61
315 316 3.305314 TCGTTATGCGAGCCCCTT 58.695 55.556 0.00 0.00 45.68 3.95
323 324 3.560278 GCCGGTGGTCGTTATGCG 61.560 66.667 1.90 0.00 43.01 4.73
324 325 2.125269 AGCCGGTGGTCGTTATGC 60.125 61.111 1.90 0.00 37.11 3.14
325 326 1.082117 GTCAGCCGGTGGTCGTTATG 61.082 60.000 1.90 0.00 37.11 1.90
326 327 1.217244 GTCAGCCGGTGGTCGTTAT 59.783 57.895 1.90 0.00 37.11 1.89
327 328 2.201708 TGTCAGCCGGTGGTCGTTA 61.202 57.895 1.90 0.00 37.11 3.18
328 329 3.542676 TGTCAGCCGGTGGTCGTT 61.543 61.111 1.90 0.00 37.11 3.85
329 330 4.295119 GTGTCAGCCGGTGGTCGT 62.295 66.667 1.90 0.00 37.11 4.34
339 340 4.803426 CTCGGCCTCGGTGTCAGC 62.803 72.222 0.00 0.00 36.95 4.26
340 341 2.418910 ATCTCGGCCTCGGTGTCAG 61.419 63.158 0.00 0.00 36.95 3.51
341 342 2.362503 ATCTCGGCCTCGGTGTCA 60.363 61.111 0.00 0.00 36.95 3.58
342 343 2.105128 CATCTCGGCCTCGGTGTC 59.895 66.667 0.00 0.00 36.95 3.67
343 344 2.680352 ACATCTCGGCCTCGGTGT 60.680 61.111 0.00 0.43 36.95 4.16
344 345 1.663379 TACACATCTCGGCCTCGGTG 61.663 60.000 0.00 4.77 36.95 4.94
345 346 0.968901 TTACACATCTCGGCCTCGGT 60.969 55.000 0.00 0.00 36.95 4.69
346 347 0.389391 ATTACACATCTCGGCCTCGG 59.611 55.000 0.00 0.00 36.95 4.63
347 348 1.067060 TCATTACACATCTCGGCCTCG 59.933 52.381 0.00 0.00 37.82 4.63
348 349 2.890808 TCATTACACATCTCGGCCTC 57.109 50.000 0.00 0.00 0.00 4.70
349 350 2.743183 GCTTCATTACACATCTCGGCCT 60.743 50.000 0.00 0.00 0.00 5.19
350 351 1.599542 GCTTCATTACACATCTCGGCC 59.400 52.381 0.00 0.00 0.00 6.13
351 352 1.599542 GGCTTCATTACACATCTCGGC 59.400 52.381 0.00 0.00 0.00 5.54
352 353 2.609459 GTGGCTTCATTACACATCTCGG 59.391 50.000 0.00 0.00 35.30 4.63
353 354 2.282555 CGTGGCTTCATTACACATCTCG 59.717 50.000 0.00 0.00 34.91 4.04
354 355 3.307242 GTCGTGGCTTCATTACACATCTC 59.693 47.826 0.00 0.00 34.91 2.75
355 356 3.262420 GTCGTGGCTTCATTACACATCT 58.738 45.455 0.00 0.00 34.91 2.90
356 357 3.000041 TGTCGTGGCTTCATTACACATC 59.000 45.455 0.00 0.00 34.91 3.06
357 358 3.052455 TGTCGTGGCTTCATTACACAT 57.948 42.857 0.00 0.00 34.91 3.21
358 359 2.535012 TGTCGTGGCTTCATTACACA 57.465 45.000 0.00 0.00 34.91 3.72
359 360 2.411031 CGTTGTCGTGGCTTCATTACAC 60.411 50.000 0.00 0.00 0.00 2.90
360 361 1.795872 CGTTGTCGTGGCTTCATTACA 59.204 47.619 0.00 0.00 0.00 2.41
361 362 1.463528 GCGTTGTCGTGGCTTCATTAC 60.464 52.381 0.00 0.00 39.49 1.89
362 363 0.793861 GCGTTGTCGTGGCTTCATTA 59.206 50.000 0.00 0.00 39.49 1.90
363 364 1.574428 GCGTTGTCGTGGCTTCATT 59.426 52.632 0.00 0.00 39.49 2.57
364 365 2.325082 GGCGTTGTCGTGGCTTCAT 61.325 57.895 0.00 0.00 39.49 2.57
365 366 2.970324 GGCGTTGTCGTGGCTTCA 60.970 61.111 0.00 0.00 39.49 3.02
366 367 3.723348 GGGCGTTGTCGTGGCTTC 61.723 66.667 0.00 0.00 39.49 3.86
389 390 2.243810 GTTCTGAGAGGAGAGTGGTGT 58.756 52.381 0.00 0.00 0.00 4.16
422 423 4.686091 CGTATATCATGTTGGGTGCTGTAG 59.314 45.833 0.00 0.00 0.00 2.74
423 424 4.342665 TCGTATATCATGTTGGGTGCTGTA 59.657 41.667 0.00 0.00 0.00 2.74
424 425 3.133901 TCGTATATCATGTTGGGTGCTGT 59.866 43.478 0.00 0.00 0.00 4.40
541 542 0.662970 TTGCGCCATTTTTCACTCGC 60.663 50.000 4.18 0.00 42.47 5.03
557 559 2.166985 CGACCGACGTTTCGTTGC 59.833 61.111 7.70 0.00 44.28 4.17
565 567 1.318158 AATTAGAGGCCGACCGACGT 61.318 55.000 0.00 0.00 42.76 4.34
570 572 1.757699 AGAGACAATTAGAGGCCGACC 59.242 52.381 0.00 0.00 0.00 4.79
573 575 3.004944 GGACTAGAGACAATTAGAGGCCG 59.995 52.174 0.00 0.00 0.00 6.13
592 600 5.359860 CCCTATATGTTGTTTCCCTTTGGAC 59.640 44.000 0.00 0.00 41.57 4.02
734 742 7.986553 TTTGGGTGGGATGATACATAAAAAT 57.013 32.000 0.00 0.00 0.00 1.82
823 840 6.131264 TGGATCCACTTAATGAATGAGCAAT 58.869 36.000 11.44 0.00 0.00 3.56
824 841 5.508567 TGGATCCACTTAATGAATGAGCAA 58.491 37.500 11.44 0.00 0.00 3.91
876 893 5.941788 AGGCAAAGGGAATAAATACGAGAT 58.058 37.500 0.00 0.00 0.00 2.75
896 913 6.424207 GGCTTTATGTAGTACATCTTGTAGGC 59.576 42.308 19.01 16.26 39.88 3.93
926 1057 2.229784 CACTGGCAAACCTTGAGGAATC 59.770 50.000 3.59 0.00 38.94 2.52
966 1097 2.627699 TGCTTGGTTGGGATTGAGTTTC 59.372 45.455 0.00 0.00 0.00 2.78
978 1109 1.370900 GTGCGCTCTTGCTTGGTTG 60.371 57.895 9.73 0.00 36.97 3.77
1021 1152 3.196685 ACGAGAAGGATGAGGAAGAAAGG 59.803 47.826 0.00 0.00 0.00 3.11
1023 1154 4.563580 CCAACGAGAAGGATGAGGAAGAAA 60.564 45.833 0.00 0.00 0.00 2.52
1027 1158 1.066143 GCCAACGAGAAGGATGAGGAA 60.066 52.381 0.00 0.00 0.00 3.36
1096 1227 0.537188 TTCTTGTGCTCCGATCCCTC 59.463 55.000 0.00 0.00 0.00 4.30
1550 1714 4.852104 CGTACGGCAAGATCTATGTATCAC 59.148 45.833 7.57 0.00 0.00 3.06
1578 1748 3.449227 CCGGTCTGCCTGACGCTA 61.449 66.667 0.00 0.00 46.24 4.26
1602 1772 6.898041 TCACACATTCGGTTATTTTCTTCTG 58.102 36.000 0.00 0.00 0.00 3.02
1651 1821 3.953612 TCCCAATATAGCAAGCAAACAGG 59.046 43.478 0.00 0.00 0.00 4.00
1653 1823 6.339730 CAAATCCCAATATAGCAAGCAAACA 58.660 36.000 0.00 0.00 0.00 2.83
1654 1824 5.234972 GCAAATCCCAATATAGCAAGCAAAC 59.765 40.000 0.00 0.00 0.00 2.93
1655 1825 5.129155 AGCAAATCCCAATATAGCAAGCAAA 59.871 36.000 0.00 0.00 0.00 3.68
1659 1829 6.208204 AGCTAAGCAAATCCCAATATAGCAAG 59.792 38.462 0.00 0.00 37.55 4.01
1660 1830 6.070656 AGCTAAGCAAATCCCAATATAGCAA 58.929 36.000 0.00 0.00 37.55 3.91
1667 1848 5.699143 AGTATGAGCTAAGCAAATCCCAAT 58.301 37.500 0.00 0.00 0.00 3.16
1684 1865 5.529289 AGGGACAAGAACATAGGAGTATGA 58.471 41.667 0.00 0.00 38.76 2.15
1689 1870 3.386402 GGAGAGGGACAAGAACATAGGAG 59.614 52.174 0.00 0.00 0.00 3.69
1691 1872 3.379452 AGGAGAGGGACAAGAACATAGG 58.621 50.000 0.00 0.00 0.00 2.57
1694 1875 2.192263 GGAGGAGAGGGACAAGAACAT 58.808 52.381 0.00 0.00 0.00 2.71
1695 1876 1.132849 TGGAGGAGAGGGACAAGAACA 60.133 52.381 0.00 0.00 0.00 3.18
1696 1877 1.645710 TGGAGGAGAGGGACAAGAAC 58.354 55.000 0.00 0.00 0.00 3.01
1698 1879 1.871418 CATGGAGGAGAGGGACAAGA 58.129 55.000 0.00 0.00 0.00 3.02
1702 1949 1.828768 CAGCATGGAGGAGAGGGAC 59.171 63.158 0.00 0.00 0.00 4.46
1729 1976 1.147153 GGCCCCTCCTTCTCATTCG 59.853 63.158 0.00 0.00 0.00 3.34
1732 1979 2.368878 GGGGCCCCTCCTTCTCAT 60.369 66.667 35.49 0.00 34.39 2.90
1746 2021 3.148279 AGAAGCTAGCGACCGGGG 61.148 66.667 9.55 0.00 0.00 5.73
1791 2066 4.497507 CCTCGATCAACTGATACGCTTGTA 60.498 45.833 0.00 0.00 34.37 2.41
1792 2067 3.439293 CTCGATCAACTGATACGCTTGT 58.561 45.455 0.00 0.00 34.37 3.16
1798 2073 2.605823 CCGCTCCTCGATCAACTGATAC 60.606 54.545 0.00 0.00 41.67 2.24
1802 2077 0.526524 GACCGCTCCTCGATCAACTG 60.527 60.000 0.00 0.00 41.67 3.16
1916 2200 7.552330 GCAAAGTAATCTCTCTCCTCTGAAAAT 59.448 37.037 0.00 0.00 0.00 1.82
1920 2204 5.019470 TGCAAAGTAATCTCTCTCCTCTGA 58.981 41.667 0.00 0.00 0.00 3.27
1921 2205 5.336150 TGCAAAGTAATCTCTCTCCTCTG 57.664 43.478 0.00 0.00 0.00 3.35
1922 2206 6.558488 ATTGCAAAGTAATCTCTCTCCTCT 57.442 37.500 1.71 0.00 0.00 3.69
1923 2207 6.928492 CCTATTGCAAAGTAATCTCTCTCCTC 59.072 42.308 1.71 0.00 0.00 3.71
1924 2208 6.613271 TCCTATTGCAAAGTAATCTCTCTCCT 59.387 38.462 1.71 0.00 0.00 3.69
1974 2261 2.227865 GGGATGTGCTAACTCGCAAAAA 59.772 45.455 0.00 0.00 42.32 1.94
1975 2262 1.810151 GGGATGTGCTAACTCGCAAAA 59.190 47.619 0.00 0.00 42.32 2.44
1976 2263 1.448985 GGGATGTGCTAACTCGCAAA 58.551 50.000 0.00 0.00 42.32 3.68
1977 2264 0.392461 GGGGATGTGCTAACTCGCAA 60.392 55.000 0.00 0.00 42.32 4.85
1978 2265 1.220749 GGGGATGTGCTAACTCGCA 59.779 57.895 0.00 0.00 37.62 5.10
1979 2266 1.523938 GGGGGATGTGCTAACTCGC 60.524 63.158 0.00 0.00 0.00 5.03
1980 2267 0.251916 TTGGGGGATGTGCTAACTCG 59.748 55.000 0.00 0.00 0.00 4.18
1981 2268 2.290960 ACTTTGGGGGATGTGCTAACTC 60.291 50.000 0.00 0.00 0.00 3.01
1982 2269 1.710809 ACTTTGGGGGATGTGCTAACT 59.289 47.619 0.00 0.00 0.00 2.24
1983 2270 2.215942 ACTTTGGGGGATGTGCTAAC 57.784 50.000 0.00 0.00 0.00 2.34
1984 2271 2.990740 AACTTTGGGGGATGTGCTAA 57.009 45.000 0.00 0.00 0.00 3.09
1985 2272 3.897239 CATAACTTTGGGGGATGTGCTA 58.103 45.455 0.00 0.00 0.00 3.49
1986 2273 2.738743 CATAACTTTGGGGGATGTGCT 58.261 47.619 0.00 0.00 0.00 4.40
1987 2274 1.136891 GCATAACTTTGGGGGATGTGC 59.863 52.381 0.00 0.00 0.00 4.57
1988 2275 1.756538 GGCATAACTTTGGGGGATGTG 59.243 52.381 0.00 0.00 0.00 3.21
1989 2276 1.342975 GGGCATAACTTTGGGGGATGT 60.343 52.381 0.00 0.00 0.00 3.06
1990 2277 1.342874 TGGGCATAACTTTGGGGGATG 60.343 52.381 0.00 0.00 0.00 3.51
1991 2278 1.014804 TGGGCATAACTTTGGGGGAT 58.985 50.000 0.00 0.00 0.00 3.85
1992 2279 0.787084 TTGGGCATAACTTTGGGGGA 59.213 50.000 0.00 0.00 0.00 4.81
1993 2280 1.762370 GATTGGGCATAACTTTGGGGG 59.238 52.381 0.00 0.00 0.00 5.40
1994 2281 1.762370 GGATTGGGCATAACTTTGGGG 59.238 52.381 0.00 0.00 0.00 4.96
1995 2282 2.695147 GAGGATTGGGCATAACTTTGGG 59.305 50.000 0.00 0.00 0.00 4.12
1996 2283 3.635591 AGAGGATTGGGCATAACTTTGG 58.364 45.455 0.00 0.00 0.00 3.28
1997 2284 7.337942 GGATATAGAGGATTGGGCATAACTTTG 59.662 40.741 0.00 0.00 0.00 2.77
1998 2285 7.406104 GGATATAGAGGATTGGGCATAACTTT 58.594 38.462 0.00 0.00 0.00 2.66
1999 2286 6.352222 CGGATATAGAGGATTGGGCATAACTT 60.352 42.308 0.00 0.00 0.00 2.66
2000 2287 5.129485 CGGATATAGAGGATTGGGCATAACT 59.871 44.000 0.00 0.00 0.00 2.24
2001 2288 5.360591 CGGATATAGAGGATTGGGCATAAC 58.639 45.833 0.00 0.00 0.00 1.89
2067 2354 3.205784 ACAATTGATAGGCCTCTCAGC 57.794 47.619 19.15 1.38 0.00 4.26
2071 2358 4.265073 GTGTCAACAATTGATAGGCCTCT 58.735 43.478 9.68 0.00 42.47 3.69
2112 2399 0.316841 ACGCGTTTTCTACCCCGTAA 59.683 50.000 5.58 0.00 31.86 3.18
2187 2477 3.951563 ATGCTAAAGATACCCCAAGCA 57.048 42.857 0.00 0.00 43.43 3.91
2188 2478 5.351458 CAAAATGCTAAAGATACCCCAAGC 58.649 41.667 0.00 0.00 0.00 4.01
2304 2596 4.224274 AACGTGGCGTGACCCGAA 62.224 61.111 0.00 0.00 39.99 4.30
2469 2767 0.810648 GGAAGCATGCAACCGAATGA 59.189 50.000 21.98 0.00 0.00 2.57
2509 2807 1.968017 AGCCATGCAACACACCTCG 60.968 57.895 0.00 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.