Multiple sequence alignment - TraesCS2B01G329700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G329700 chr2B 100.000 4027 0 0 1447 5473 474403836 474407862 0.000000e+00 7437
1 TraesCS2B01G329700 chr2B 100.000 1109 0 0 1 1109 474402390 474403498 0.000000e+00 2049
2 TraesCS2B01G329700 chr2B 96.125 542 19 2 286 825 39425595 39425054 0.000000e+00 883
3 TraesCS2B01G329700 chr2A 95.381 1797 71 5 1451 3239 537401011 537402803 0.000000e+00 2848
4 TraesCS2B01G329700 chr2A 94.479 1431 49 19 3363 4774 537402802 537404221 0.000000e+00 2178
5 TraesCS2B01G329700 chr2A 96.798 531 16 1 286 815 608889722 608890252 0.000000e+00 885
6 TraesCS2B01G329700 chr2A 93.793 290 13 3 820 1109 537400709 537400993 1.090000e-116 431
7 TraesCS2B01G329700 chr2D 94.088 1810 67 16 1451 3238 400051233 400053024 0.000000e+00 2713
8 TraesCS2B01G329700 chr2D 93.692 1506 61 19 3363 4844 400053022 400054517 0.000000e+00 2224
9 TraesCS2B01G329700 chr2D 95.376 173 3 1 937 1109 400051049 400051216 2.510000e-68 270
10 TraesCS2B01G329700 chr2D 91.358 162 14 0 3228 3389 367919872 367920033 7.140000e-54 222
11 TraesCS2B01G329700 chr2D 97.727 88 1 1 820 906 400050964 400051051 3.420000e-32 150
12 TraesCS2B01G329700 chr7B 97.335 638 16 1 4837 5473 654029395 654028758 0.000000e+00 1083
13 TraesCS2B01G329700 chr7B 96.269 536 19 1 286 820 253904028 253903493 0.000000e+00 878
14 TraesCS2B01G329700 chr4A 96.850 635 19 1 4840 5473 100649649 100650283 0.000000e+00 1061
15 TraesCS2B01G329700 chr4A 95.604 546 22 2 286 830 92211322 92211866 0.000000e+00 874
16 TraesCS2B01G329700 chr4A 98.611 288 4 0 1 288 377593207 377592920 1.360000e-140 510
17 TraesCS2B01G329700 chr4A 98.611 288 4 0 1 288 537233246 537233533 1.360000e-140 510
18 TraesCS2B01G329700 chr3B 96.975 628 17 2 4846 5473 80975054 80974429 0.000000e+00 1053
19 TraesCS2B01G329700 chr3B 95.238 630 25 2 4844 5473 346627147 346626523 0.000000e+00 992
20 TraesCS2B01G329700 chr3B 93.252 163 9 2 3222 3383 271190955 271190794 7.090000e-59 239
21 TraesCS2B01G329700 chr3B 90.964 166 13 2 3219 3383 421751795 421751959 7.140000e-54 222
22 TraesCS2B01G329700 chr3B 91.304 161 14 0 3223 3383 630594222 630594062 2.570000e-53 220
23 TraesCS2B01G329700 chr1A 96.184 629 24 0 4845 5473 368199164 368199792 0.000000e+00 1029
24 TraesCS2B01G329700 chr1A 98.611 288 4 0 1 288 58196486 58196199 1.360000e-140 510
25 TraesCS2B01G329700 chr1B 95.563 631 24 4 4845 5473 658788760 658788132 0.000000e+00 1007
26 TraesCS2B01G329700 chr1B 95.404 631 25 4 4845 5473 133215639 133215011 0.000000e+00 1002
27 TraesCS2B01G329700 chr1B 95.268 634 27 3 4842 5473 195538208 195538840 0.000000e+00 1002
28 TraesCS2B01G329700 chr1B 92.169 166 11 2 3219 3383 236023791 236023955 3.300000e-57 233
29 TraesCS2B01G329700 chr3A 94.436 629 35 0 4845 5473 552705551 552704923 0.000000e+00 968
30 TraesCS2B01G329700 chr3A 96.822 535 16 1 286 819 489213688 489214222 0.000000e+00 893
31 TraesCS2B01G329700 chr7A 96.629 534 17 1 286 818 657506152 657505619 0.000000e+00 885
32 TraesCS2B01G329700 chr7A 96.276 537 19 1 286 821 652193187 652192651 0.000000e+00 880
33 TraesCS2B01G329700 chr7A 98.611 288 4 0 1 288 121046650 121046363 1.360000e-140 510
34 TraesCS2B01G329700 chr5A 96.610 531 17 1 286 815 22288455 22288985 0.000000e+00 880
35 TraesCS2B01G329700 chr5A 98.611 288 4 0 1 288 488266439 488266152 1.360000e-140 510
36 TraesCS2B01G329700 chr6B 96.089 537 20 1 286 821 135852428 135851892 0.000000e+00 874
37 TraesCS2B01G329700 chr6B 98.611 288 4 0 1 288 663847991 663847704 1.360000e-140 510
38 TraesCS2B01G329700 chr6B 92.638 163 10 2 3222 3383 508787760 508787599 3.300000e-57 233
39 TraesCS2B01G329700 chrUn 98.611 288 4 0 1 288 304158204 304158491 1.360000e-140 510
40 TraesCS2B01G329700 chrUn 92.169 166 11 2 3219 3383 66416390 66416554 3.300000e-57 233
41 TraesCS2B01G329700 chr6A 98.611 288 4 0 1 288 116918746 116919033 1.360000e-140 510
42 TraesCS2B01G329700 chr5B 98.611 288 4 0 1 288 579531501 579531214 1.360000e-140 510
43 TraesCS2B01G329700 chr5B 92.771 166 10 2 3219 3383 266982132 266982296 7.090000e-59 239
44 TraesCS2B01G329700 chr5B 91.566 166 12 2 3219 3383 132756524 132756688 1.530000e-55 228


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G329700 chr2B 474402390 474407862 5472 False 4743.00 7437 100.00000 1 5473 2 chr2B.!!$F1 5472
1 TraesCS2B01G329700 chr2B 39425054 39425595 541 True 883.00 883 96.12500 286 825 1 chr2B.!!$R1 539
2 TraesCS2B01G329700 chr2A 537400709 537404221 3512 False 1819.00 2848 94.55100 820 4774 3 chr2A.!!$F2 3954
3 TraesCS2B01G329700 chr2A 608889722 608890252 530 False 885.00 885 96.79800 286 815 1 chr2A.!!$F1 529
4 TraesCS2B01G329700 chr2D 400050964 400054517 3553 False 1339.25 2713 95.22075 820 4844 4 chr2D.!!$F2 4024
5 TraesCS2B01G329700 chr7B 654028758 654029395 637 True 1083.00 1083 97.33500 4837 5473 1 chr7B.!!$R2 636
6 TraesCS2B01G329700 chr7B 253903493 253904028 535 True 878.00 878 96.26900 286 820 1 chr7B.!!$R1 534
7 TraesCS2B01G329700 chr4A 100649649 100650283 634 False 1061.00 1061 96.85000 4840 5473 1 chr4A.!!$F2 633
8 TraesCS2B01G329700 chr4A 92211322 92211866 544 False 874.00 874 95.60400 286 830 1 chr4A.!!$F1 544
9 TraesCS2B01G329700 chr3B 80974429 80975054 625 True 1053.00 1053 96.97500 4846 5473 1 chr3B.!!$R1 627
10 TraesCS2B01G329700 chr3B 346626523 346627147 624 True 992.00 992 95.23800 4844 5473 1 chr3B.!!$R3 629
11 TraesCS2B01G329700 chr1A 368199164 368199792 628 False 1029.00 1029 96.18400 4845 5473 1 chr1A.!!$F1 628
12 TraesCS2B01G329700 chr1B 658788132 658788760 628 True 1007.00 1007 95.56300 4845 5473 1 chr1B.!!$R2 628
13 TraesCS2B01G329700 chr1B 133215011 133215639 628 True 1002.00 1002 95.40400 4845 5473 1 chr1B.!!$R1 628
14 TraesCS2B01G329700 chr1B 195538208 195538840 632 False 1002.00 1002 95.26800 4842 5473 1 chr1B.!!$F1 631
15 TraesCS2B01G329700 chr3A 552704923 552705551 628 True 968.00 968 94.43600 4845 5473 1 chr3A.!!$R1 628
16 TraesCS2B01G329700 chr3A 489213688 489214222 534 False 893.00 893 96.82200 286 819 1 chr3A.!!$F1 533
17 TraesCS2B01G329700 chr7A 657505619 657506152 533 True 885.00 885 96.62900 286 818 1 chr7A.!!$R3 532
18 TraesCS2B01G329700 chr7A 652192651 652193187 536 True 880.00 880 96.27600 286 821 1 chr7A.!!$R2 535
19 TraesCS2B01G329700 chr5A 22288455 22288985 530 False 880.00 880 96.61000 286 815 1 chr5A.!!$F1 529
20 TraesCS2B01G329700 chr6B 135851892 135852428 536 True 874.00 874 96.08900 286 821 1 chr6B.!!$R1 535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
173 174 0.038890 GCTGCCTTCCTTTCCCTCTT 59.961 55.000 0.0 0.0 0.00 2.85 F
272 273 0.107508 CACCCATCAGAATCGGTGCT 60.108 55.000 0.0 0.0 37.34 4.40 F
274 275 0.178767 CCCATCAGAATCGGTGCTCA 59.821 55.000 0.0 0.0 0.00 4.26 F
1476 1478 0.387565 GTGTGGATTTTGGTGCGGTT 59.612 50.000 0.0 0.0 0.00 4.44 F
2524 2548 1.679139 TTTGACAGAGTTGGCAGGTG 58.321 50.000 0.0 0.0 44.87 4.00 F
3361 3390 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.0 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2070 2094 0.108615 CCCAACTACAGACAGAGGCG 60.109 60.000 0.0 0.0 0.00 5.52 R
2232 2256 4.552166 ACGAAGATGACAACCTTGTTTG 57.448 40.909 0.0 0.0 42.43 2.93 R
2233 2257 4.755123 CCTACGAAGATGACAACCTTGTTT 59.245 41.667 0.0 0.0 42.43 2.83 R
3342 3371 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.0 0.0 0.00 2.17 R
3493 3522 0.672401 AACACATTACGTCTGGCCCG 60.672 55.000 0.0 0.0 0.00 6.13 R
4642 4676 0.034574 ACCATATTCGGTTGCCTGCA 60.035 50.000 0.0 0.0 34.91 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.379669 CATCCATGGAGCGTTCTTGC 59.620 55.000 21.33 0.00 0.00 4.01
20 21 0.749454 ATCCATGGAGCGTTCTTGCC 60.749 55.000 21.33 0.00 34.65 4.52
21 22 1.675310 CCATGGAGCGTTCTTGCCA 60.675 57.895 5.56 0.00 34.65 4.92
22 23 1.651240 CCATGGAGCGTTCTTGCCAG 61.651 60.000 5.56 0.00 33.26 4.85
23 24 0.957395 CATGGAGCGTTCTTGCCAGT 60.957 55.000 0.00 0.00 33.26 4.00
24 25 0.957395 ATGGAGCGTTCTTGCCAGTG 60.957 55.000 0.00 0.00 33.26 3.66
25 26 2.328099 GGAGCGTTCTTGCCAGTGG 61.328 63.158 4.20 4.20 34.65 4.00
26 27 1.301716 GAGCGTTCTTGCCAGTGGA 60.302 57.895 15.20 0.00 34.65 4.02
27 28 1.294659 GAGCGTTCTTGCCAGTGGAG 61.295 60.000 15.20 1.77 34.65 3.86
28 29 1.598130 GCGTTCTTGCCAGTGGAGT 60.598 57.895 15.20 0.00 0.00 3.85
29 30 1.569479 GCGTTCTTGCCAGTGGAGTC 61.569 60.000 15.20 0.00 0.00 3.36
30 31 0.249868 CGTTCTTGCCAGTGGAGTCA 60.250 55.000 15.20 0.00 0.00 3.41
31 32 1.517242 GTTCTTGCCAGTGGAGTCAG 58.483 55.000 15.20 2.04 0.00 3.51
32 33 0.397941 TTCTTGCCAGTGGAGTCAGG 59.602 55.000 15.20 1.88 0.00 3.86
33 34 0.471780 TCTTGCCAGTGGAGTCAGGA 60.472 55.000 15.20 4.57 0.00 3.86
34 35 0.397941 CTTGCCAGTGGAGTCAGGAA 59.602 55.000 15.20 0.00 0.00 3.36
35 36 0.843309 TTGCCAGTGGAGTCAGGAAA 59.157 50.000 15.20 0.00 0.00 3.13
36 37 0.108585 TGCCAGTGGAGTCAGGAAAC 59.891 55.000 15.20 0.00 0.00 2.78
37 38 0.108585 GCCAGTGGAGTCAGGAAACA 59.891 55.000 15.20 0.00 0.00 2.83
38 39 1.476833 GCCAGTGGAGTCAGGAAACAA 60.477 52.381 15.20 0.00 0.00 2.83
39 40 2.930950 CCAGTGGAGTCAGGAAACAAA 58.069 47.619 1.68 0.00 0.00 2.83
40 41 2.880890 CCAGTGGAGTCAGGAAACAAAG 59.119 50.000 1.68 0.00 0.00 2.77
41 42 3.545703 CAGTGGAGTCAGGAAACAAAGT 58.454 45.455 0.00 0.00 0.00 2.66
42 43 3.561725 CAGTGGAGTCAGGAAACAAAGTC 59.438 47.826 0.00 0.00 0.00 3.01
43 44 2.879026 GTGGAGTCAGGAAACAAAGTCC 59.121 50.000 0.00 0.00 37.22 3.85
44 45 2.777692 TGGAGTCAGGAAACAAAGTCCT 59.222 45.455 0.00 0.00 46.92 3.85
45 46 3.181454 TGGAGTCAGGAAACAAAGTCCTC 60.181 47.826 0.00 0.00 44.00 3.71
46 47 3.060602 GAGTCAGGAAACAAAGTCCTCG 58.939 50.000 0.00 0.00 44.00 4.63
47 48 2.698797 AGTCAGGAAACAAAGTCCTCGA 59.301 45.455 0.00 0.00 44.00 4.04
48 49 2.801111 GTCAGGAAACAAAGTCCTCGAC 59.199 50.000 0.00 0.00 44.00 4.20
49 50 2.432874 TCAGGAAACAAAGTCCTCGACA 59.567 45.455 0.00 0.00 44.00 4.35
50 51 2.544267 CAGGAAACAAAGTCCTCGACAC 59.456 50.000 0.00 0.00 44.00 3.67
51 52 2.169769 AGGAAACAAAGTCCTCGACACA 59.830 45.455 0.00 0.00 42.02 3.72
52 53 2.940410 GGAAACAAAGTCCTCGACACAA 59.060 45.455 0.00 0.00 34.60 3.33
53 54 3.564225 GGAAACAAAGTCCTCGACACAAT 59.436 43.478 0.00 0.00 34.60 2.71
54 55 4.527564 GAAACAAAGTCCTCGACACAATG 58.472 43.478 0.00 0.00 34.60 2.82
55 56 3.194005 ACAAAGTCCTCGACACAATGT 57.806 42.857 0.00 0.00 34.60 2.71
56 57 4.330944 ACAAAGTCCTCGACACAATGTA 57.669 40.909 0.00 0.00 34.60 2.29
57 58 4.056050 ACAAAGTCCTCGACACAATGTAC 58.944 43.478 0.00 0.00 34.60 2.90
58 59 3.314541 AAGTCCTCGACACAATGTACC 57.685 47.619 0.00 0.00 34.60 3.34
59 60 2.244695 AGTCCTCGACACAATGTACCA 58.755 47.619 0.00 0.00 34.60 3.25
60 61 2.029290 AGTCCTCGACACAATGTACCAC 60.029 50.000 0.00 0.00 34.60 4.16
61 62 1.964933 TCCTCGACACAATGTACCACA 59.035 47.619 0.00 0.00 0.00 4.17
62 63 2.565391 TCCTCGACACAATGTACCACAT 59.435 45.455 0.00 0.00 41.31 3.21
63 64 3.764972 TCCTCGACACAATGTACCACATA 59.235 43.478 0.00 0.00 37.97 2.29
64 65 4.404394 TCCTCGACACAATGTACCACATAT 59.596 41.667 0.00 0.00 37.97 1.78
65 66 5.595133 TCCTCGACACAATGTACCACATATA 59.405 40.000 0.00 0.00 37.97 0.86
66 67 5.690409 CCTCGACACAATGTACCACATATAC 59.310 44.000 0.00 0.00 37.97 1.47
67 68 5.593968 TCGACACAATGTACCACATATACC 58.406 41.667 0.00 0.00 37.97 2.73
68 69 4.748102 CGACACAATGTACCACATATACCC 59.252 45.833 0.00 0.00 37.97 3.69
69 70 5.676552 GACACAATGTACCACATATACCCA 58.323 41.667 0.00 0.00 37.97 4.51
70 71 5.433526 ACACAATGTACCACATATACCCAC 58.566 41.667 0.00 0.00 37.97 4.61
71 72 4.509970 CACAATGTACCACATATACCCACG 59.490 45.833 0.00 0.00 37.97 4.94
72 73 4.406326 ACAATGTACCACATATACCCACGA 59.594 41.667 0.00 0.00 37.97 4.35
73 74 4.866508 ATGTACCACATATACCCACGAG 57.133 45.455 0.00 0.00 36.99 4.18
74 75 2.363038 TGTACCACATATACCCACGAGC 59.637 50.000 0.00 0.00 0.00 5.03
75 76 1.491668 ACCACATATACCCACGAGCA 58.508 50.000 0.00 0.00 0.00 4.26
76 77 2.047061 ACCACATATACCCACGAGCAT 58.953 47.619 0.00 0.00 0.00 3.79
77 78 2.224281 ACCACATATACCCACGAGCATG 60.224 50.000 0.00 0.00 0.00 4.06
78 79 2.224281 CCACATATACCCACGAGCATGT 60.224 50.000 0.00 0.00 0.00 3.21
79 80 2.802247 CACATATACCCACGAGCATGTG 59.198 50.000 0.00 1.64 37.85 3.21
80 81 2.434336 ACATATACCCACGAGCATGTGT 59.566 45.455 7.45 0.00 38.20 3.72
81 82 2.882927 TATACCCACGAGCATGTGTC 57.117 50.000 7.45 0.00 38.20 3.67
82 83 1.195115 ATACCCACGAGCATGTGTCT 58.805 50.000 7.45 0.00 38.20 3.41
83 84 0.246360 TACCCACGAGCATGTGTCTG 59.754 55.000 7.45 0.00 38.20 3.51
84 85 1.742880 CCCACGAGCATGTGTCTGG 60.743 63.158 7.45 2.44 38.20 3.86
85 86 1.293179 CCACGAGCATGTGTCTGGA 59.707 57.895 7.45 0.00 38.20 3.86
86 87 0.107993 CCACGAGCATGTGTCTGGAT 60.108 55.000 7.45 0.00 38.20 3.41
87 88 1.284657 CACGAGCATGTGTCTGGATC 58.715 55.000 0.00 0.00 35.12 3.36
88 89 0.897621 ACGAGCATGTGTCTGGATCA 59.102 50.000 0.00 0.00 0.00 2.92
89 90 1.284657 CGAGCATGTGTCTGGATCAC 58.715 55.000 0.00 0.00 36.48 3.06
97 98 4.133013 TGTGTCTGGATCACATCATCAG 57.867 45.455 0.00 0.00 40.26 2.90
98 99 3.516700 TGTGTCTGGATCACATCATCAGT 59.483 43.478 0.00 0.00 40.26 3.41
99 100 4.019950 TGTGTCTGGATCACATCATCAGTT 60.020 41.667 0.00 0.00 40.26 3.16
100 101 4.331992 GTGTCTGGATCACATCATCAGTTG 59.668 45.833 0.00 0.00 36.05 3.16
101 102 3.311871 GTCTGGATCACATCATCAGTTGC 59.688 47.826 0.00 0.00 0.00 4.17
102 103 3.054948 TCTGGATCACATCATCAGTTGCA 60.055 43.478 0.00 0.00 0.00 4.08
103 104 3.883489 CTGGATCACATCATCAGTTGCAT 59.117 43.478 0.00 0.00 0.00 3.96
104 105 3.881089 TGGATCACATCATCAGTTGCATC 59.119 43.478 0.00 0.00 0.00 3.91
105 106 3.252701 GGATCACATCATCAGTTGCATCC 59.747 47.826 0.00 0.00 0.00 3.51
106 107 2.282407 TCACATCATCAGTTGCATCCG 58.718 47.619 0.00 0.00 0.00 4.18
107 108 1.332686 CACATCATCAGTTGCATCCGG 59.667 52.381 0.00 0.00 0.00 5.14
108 109 1.210234 ACATCATCAGTTGCATCCGGA 59.790 47.619 6.61 6.61 0.00 5.14
109 110 1.871676 CATCATCAGTTGCATCCGGAG 59.128 52.381 11.34 3.17 0.00 4.63
128 129 2.874751 GCACGCCGCCAAGTTATT 59.125 55.556 0.00 0.00 32.94 1.40
129 130 1.211709 GCACGCCGCCAAGTTATTT 59.788 52.632 0.00 0.00 32.94 1.40
130 131 0.388006 GCACGCCGCCAAGTTATTTT 60.388 50.000 0.00 0.00 32.94 1.82
131 132 1.335935 CACGCCGCCAAGTTATTTTG 58.664 50.000 0.00 0.00 0.00 2.44
132 133 1.068885 CACGCCGCCAAGTTATTTTGA 60.069 47.619 0.00 0.00 0.00 2.69
133 134 1.609555 ACGCCGCCAAGTTATTTTGAA 59.390 42.857 0.00 0.00 0.00 2.69
134 135 2.230266 ACGCCGCCAAGTTATTTTGAAT 59.770 40.909 0.00 0.00 0.00 2.57
135 136 2.851824 CGCCGCCAAGTTATTTTGAATC 59.148 45.455 0.00 0.00 0.00 2.52
136 137 3.186909 GCCGCCAAGTTATTTTGAATCC 58.813 45.455 0.00 0.00 0.00 3.01
137 138 3.367910 GCCGCCAAGTTATTTTGAATCCA 60.368 43.478 0.00 0.00 0.00 3.41
138 139 4.173256 CCGCCAAGTTATTTTGAATCCAC 58.827 43.478 0.00 0.00 0.00 4.02
139 140 3.851403 CGCCAAGTTATTTTGAATCCACG 59.149 43.478 0.00 0.00 0.00 4.94
140 141 4.614993 CGCCAAGTTATTTTGAATCCACGT 60.615 41.667 0.00 0.00 0.00 4.49
141 142 4.621034 GCCAAGTTATTTTGAATCCACGTG 59.379 41.667 9.08 9.08 0.00 4.49
142 143 5.563867 GCCAAGTTATTTTGAATCCACGTGA 60.564 40.000 19.30 3.36 0.00 4.35
143 144 6.442952 CCAAGTTATTTTGAATCCACGTGAA 58.557 36.000 19.30 0.00 0.00 3.18
144 145 6.920758 CCAAGTTATTTTGAATCCACGTGAAA 59.079 34.615 19.30 8.76 0.00 2.69
145 146 7.114811 CCAAGTTATTTTGAATCCACGTGAAAG 59.885 37.037 19.30 0.00 0.00 2.62
146 147 6.149633 AGTTATTTTGAATCCACGTGAAAGC 58.850 36.000 19.30 4.29 0.00 3.51
147 148 4.582701 ATTTTGAATCCACGTGAAAGCA 57.417 36.364 19.30 7.08 0.00 3.91
148 149 3.624326 TTTGAATCCACGTGAAAGCAG 57.376 42.857 19.30 0.00 0.00 4.24
149 150 0.874390 TGAATCCACGTGAAAGCAGC 59.126 50.000 19.30 0.00 0.00 5.25
150 151 1.160137 GAATCCACGTGAAAGCAGCT 58.840 50.000 19.30 0.00 0.00 4.24
151 152 1.129437 GAATCCACGTGAAAGCAGCTC 59.871 52.381 19.30 0.00 0.00 4.09
152 153 0.674895 ATCCACGTGAAAGCAGCTCC 60.675 55.000 19.30 0.00 0.00 4.70
153 154 2.671177 CCACGTGAAAGCAGCTCCG 61.671 63.158 19.30 0.00 0.00 4.63
154 155 2.357517 ACGTGAAAGCAGCTCCGG 60.358 61.111 0.00 0.00 0.00 5.14
155 156 3.793144 CGTGAAAGCAGCTCCGGC 61.793 66.667 0.00 0.00 39.06 6.13
165 166 4.416738 GCTCCGGCTGCCTTCCTT 62.417 66.667 17.92 0.00 35.22 3.36
166 167 2.352805 CTCCGGCTGCCTTCCTTT 59.647 61.111 17.92 0.00 0.00 3.11
167 168 1.746991 CTCCGGCTGCCTTCCTTTC 60.747 63.158 17.92 0.00 0.00 2.62
168 169 2.751837 CCGGCTGCCTTCCTTTCC 60.752 66.667 17.92 0.00 0.00 3.13
169 170 2.751837 CGGCTGCCTTCCTTTCCC 60.752 66.667 17.92 0.00 0.00 3.97
170 171 2.766660 GGCTGCCTTCCTTTCCCT 59.233 61.111 12.43 0.00 0.00 4.20
171 172 1.379176 GGCTGCCTTCCTTTCCCTC 60.379 63.158 12.43 0.00 0.00 4.30
172 173 1.688211 GCTGCCTTCCTTTCCCTCT 59.312 57.895 0.00 0.00 0.00 3.69
173 174 0.038890 GCTGCCTTCCTTTCCCTCTT 59.961 55.000 0.00 0.00 0.00 2.85
174 175 1.952839 GCTGCCTTCCTTTCCCTCTTC 60.953 57.143 0.00 0.00 0.00 2.87
175 176 1.632920 CTGCCTTCCTTTCCCTCTTCT 59.367 52.381 0.00 0.00 0.00 2.85
176 177 2.040947 CTGCCTTCCTTTCCCTCTTCTT 59.959 50.000 0.00 0.00 0.00 2.52
177 178 2.040412 TGCCTTCCTTTCCCTCTTCTTC 59.960 50.000 0.00 0.00 0.00 2.87
178 179 2.307392 GCCTTCCTTTCCCTCTTCTTCT 59.693 50.000 0.00 0.00 0.00 2.85
179 180 3.245087 GCCTTCCTTTCCCTCTTCTTCTT 60.245 47.826 0.00 0.00 0.00 2.52
180 181 4.584874 CCTTCCTTTCCCTCTTCTTCTTC 58.415 47.826 0.00 0.00 0.00 2.87
181 182 4.288366 CCTTCCTTTCCCTCTTCTTCTTCT 59.712 45.833 0.00 0.00 0.00 2.85
182 183 5.487433 CTTCCTTTCCCTCTTCTTCTTCTC 58.513 45.833 0.00 0.00 0.00 2.87
183 184 4.757692 TCCTTTCCCTCTTCTTCTTCTCT 58.242 43.478 0.00 0.00 0.00 3.10
184 185 5.158889 TCCTTTCCCTCTTCTTCTTCTCTT 58.841 41.667 0.00 0.00 0.00 2.85
185 186 5.247337 TCCTTTCCCTCTTCTTCTTCTCTTC 59.753 44.000 0.00 0.00 0.00 2.87
186 187 5.248248 CCTTTCCCTCTTCTTCTTCTCTTCT 59.752 44.000 0.00 0.00 0.00 2.85
187 188 5.993748 TTCCCTCTTCTTCTTCTCTTCTC 57.006 43.478 0.00 0.00 0.00 2.87
188 189 4.349365 TCCCTCTTCTTCTTCTCTTCTCC 58.651 47.826 0.00 0.00 0.00 3.71
189 190 3.450817 CCCTCTTCTTCTTCTCTTCTCCC 59.549 52.174 0.00 0.00 0.00 4.30
190 191 4.352893 CCTCTTCTTCTTCTCTTCTCCCT 58.647 47.826 0.00 0.00 0.00 4.20
191 192 4.402474 CCTCTTCTTCTTCTCTTCTCCCTC 59.598 50.000 0.00 0.00 0.00 4.30
192 193 4.349365 TCTTCTTCTTCTCTTCTCCCTCC 58.651 47.826 0.00 0.00 0.00 4.30
193 194 4.045334 TCTTCTTCTTCTCTTCTCCCTCCT 59.955 45.833 0.00 0.00 0.00 3.69
194 195 3.976015 TCTTCTTCTCTTCTCCCTCCTC 58.024 50.000 0.00 0.00 0.00 3.71
195 196 3.596046 TCTTCTTCTCTTCTCCCTCCTCT 59.404 47.826 0.00 0.00 0.00 3.69
196 197 4.791334 TCTTCTTCTCTTCTCCCTCCTCTA 59.209 45.833 0.00 0.00 0.00 2.43
197 198 4.513406 TCTTCTCTTCTCCCTCCTCTAC 57.487 50.000 0.00 0.00 0.00 2.59
198 199 3.853181 TCTTCTCTTCTCCCTCCTCTACA 59.147 47.826 0.00 0.00 0.00 2.74
199 200 4.480537 TCTTCTCTTCTCCCTCCTCTACAT 59.519 45.833 0.00 0.00 0.00 2.29
200 201 4.447138 TCTCTTCTCCCTCCTCTACATC 57.553 50.000 0.00 0.00 0.00 3.06
201 202 3.788708 TCTCTTCTCCCTCCTCTACATCA 59.211 47.826 0.00 0.00 0.00 3.07
202 203 4.418526 TCTCTTCTCCCTCCTCTACATCAT 59.581 45.833 0.00 0.00 0.00 2.45
203 204 4.735369 TCTTCTCCCTCCTCTACATCATC 58.265 47.826 0.00 0.00 0.00 2.92
204 205 3.534357 TCTCCCTCCTCTACATCATCC 57.466 52.381 0.00 0.00 0.00 3.51
205 206 3.067470 TCTCCCTCCTCTACATCATCCT 58.933 50.000 0.00 0.00 0.00 3.24
206 207 3.075283 TCTCCCTCCTCTACATCATCCTC 59.925 52.174 0.00 0.00 0.00 3.71
207 208 2.791774 TCCCTCCTCTACATCATCCTCA 59.208 50.000 0.00 0.00 0.00 3.86
208 209 3.207549 TCCCTCCTCTACATCATCCTCAA 59.792 47.826 0.00 0.00 0.00 3.02
209 210 3.323403 CCCTCCTCTACATCATCCTCAAC 59.677 52.174 0.00 0.00 0.00 3.18
210 211 3.323403 CCTCCTCTACATCATCCTCAACC 59.677 52.174 0.00 0.00 0.00 3.77
211 212 4.222336 CTCCTCTACATCATCCTCAACCT 58.778 47.826 0.00 0.00 0.00 3.50
212 213 4.219115 TCCTCTACATCATCCTCAACCTC 58.781 47.826 0.00 0.00 0.00 3.85
213 214 3.005261 CCTCTACATCATCCTCAACCTCG 59.995 52.174 0.00 0.00 0.00 4.63
214 215 2.959030 TCTACATCATCCTCAACCTCGG 59.041 50.000 0.00 0.00 0.00 4.63
215 216 1.573108 ACATCATCCTCAACCTCGGT 58.427 50.000 0.00 0.00 0.00 4.69
216 217 2.747177 ACATCATCCTCAACCTCGGTA 58.253 47.619 0.00 0.00 0.00 4.02
217 218 2.695666 ACATCATCCTCAACCTCGGTAG 59.304 50.000 0.00 0.00 0.00 3.18
233 234 3.870633 GGTAGGAGCCATACCGATAAG 57.129 52.381 1.20 0.00 33.78 1.73
234 235 3.428532 GGTAGGAGCCATACCGATAAGA 58.571 50.000 1.20 0.00 33.78 2.10
235 236 3.444388 GGTAGGAGCCATACCGATAAGAG 59.556 52.174 1.20 0.00 33.78 2.85
236 237 1.896465 AGGAGCCATACCGATAAGAGC 59.104 52.381 0.00 0.00 0.00 4.09
237 238 1.618837 GGAGCCATACCGATAAGAGCA 59.381 52.381 0.00 0.00 0.00 4.26
238 239 2.037251 GGAGCCATACCGATAAGAGCAA 59.963 50.000 0.00 0.00 0.00 3.91
239 240 3.307059 GGAGCCATACCGATAAGAGCAAT 60.307 47.826 0.00 0.00 0.00 3.56
240 241 3.929610 GAGCCATACCGATAAGAGCAATC 59.070 47.826 0.00 0.00 0.00 2.67
241 242 3.324846 AGCCATACCGATAAGAGCAATCA 59.675 43.478 0.00 0.00 0.00 2.57
242 243 4.019860 AGCCATACCGATAAGAGCAATCAT 60.020 41.667 0.00 0.00 0.00 2.45
243 244 4.331168 GCCATACCGATAAGAGCAATCATC 59.669 45.833 0.00 0.00 0.00 2.92
244 245 5.728471 CCATACCGATAAGAGCAATCATCT 58.272 41.667 0.00 0.00 0.00 2.90
245 246 5.579904 CCATACCGATAAGAGCAATCATCTG 59.420 44.000 0.00 0.00 0.00 2.90
246 247 3.397482 ACCGATAAGAGCAATCATCTGC 58.603 45.455 0.00 0.00 42.97 4.26
252 253 2.052414 GCAATCATCTGCTCGCGC 60.052 61.111 0.00 0.00 39.34 6.86
253 254 2.630317 CAATCATCTGCTCGCGCC 59.370 61.111 0.00 0.00 34.43 6.53
254 255 2.175621 CAATCATCTGCTCGCGCCA 61.176 57.895 0.00 0.00 34.43 5.69
255 256 2.176273 AATCATCTGCTCGCGCCAC 61.176 57.895 0.00 0.00 34.43 5.01
256 257 4.819761 TCATCTGCTCGCGCCACC 62.820 66.667 0.00 0.00 34.43 4.61
263 264 4.147449 CTCGCGCCACCCATCAGA 62.147 66.667 0.00 0.00 0.00 3.27
264 265 3.664025 CTCGCGCCACCCATCAGAA 62.664 63.158 0.00 0.00 0.00 3.02
265 266 2.514592 CGCGCCACCCATCAGAAT 60.515 61.111 0.00 0.00 0.00 2.40
266 267 2.537560 CGCGCCACCCATCAGAATC 61.538 63.158 0.00 0.00 0.00 2.52
267 268 2.537560 GCGCCACCCATCAGAATCG 61.538 63.158 0.00 0.00 0.00 3.34
268 269 1.889105 CGCCACCCATCAGAATCGG 60.889 63.158 0.00 0.00 0.00 4.18
269 270 1.224592 GCCACCCATCAGAATCGGT 59.775 57.895 0.00 0.00 0.00 4.69
270 271 1.097547 GCCACCCATCAGAATCGGTG 61.098 60.000 6.86 6.86 42.13 4.94
271 272 1.097547 CCACCCATCAGAATCGGTGC 61.098 60.000 7.97 0.00 41.40 5.01
272 273 0.107508 CACCCATCAGAATCGGTGCT 60.108 55.000 0.00 0.00 37.34 4.40
273 274 0.179000 ACCCATCAGAATCGGTGCTC 59.821 55.000 0.00 0.00 0.00 4.26
274 275 0.178767 CCCATCAGAATCGGTGCTCA 59.821 55.000 0.00 0.00 0.00 4.26
275 276 1.202734 CCCATCAGAATCGGTGCTCAT 60.203 52.381 0.00 0.00 0.00 2.90
276 277 2.037641 CCCATCAGAATCGGTGCTCATA 59.962 50.000 0.00 0.00 0.00 2.15
277 278 3.062763 CCATCAGAATCGGTGCTCATAC 58.937 50.000 0.00 0.00 0.00 2.39
278 279 3.493176 CCATCAGAATCGGTGCTCATACA 60.493 47.826 0.00 0.00 0.00 2.29
279 280 4.313282 CATCAGAATCGGTGCTCATACAT 58.687 43.478 0.00 0.00 0.00 2.29
280 281 5.473039 CATCAGAATCGGTGCTCATACATA 58.527 41.667 0.00 0.00 0.00 2.29
281 282 5.126396 TCAGAATCGGTGCTCATACATAG 57.874 43.478 0.00 0.00 0.00 2.23
282 283 4.827284 TCAGAATCGGTGCTCATACATAGA 59.173 41.667 0.00 0.00 0.00 1.98
283 284 5.048434 TCAGAATCGGTGCTCATACATAGAG 60.048 44.000 0.00 0.00 36.21 2.43
284 285 4.219507 AGAATCGGTGCTCATACATAGAGG 59.780 45.833 0.00 0.00 33.72 3.69
322 323 4.411869 ACCAAACAAATCAAGGGTTCCATT 59.588 37.500 0.00 0.00 0.00 3.16
369 371 5.720261 GGCAACAAATTTACGGAACAAAA 57.280 34.783 0.00 0.00 0.00 2.44
509 511 1.379176 TGTCCAGAGAGCGGAGAGG 60.379 63.158 0.00 0.00 31.65 3.69
682 684 1.141019 GGATGTGCGACGCCTAAGA 59.859 57.895 18.69 0.00 0.00 2.10
788 790 6.275335 ACAGGTCAGTTTGTGATTTGATTTG 58.725 36.000 0.00 0.00 37.56 2.32
789 791 5.693104 CAGGTCAGTTTGTGATTTGATTTGG 59.307 40.000 0.00 0.00 37.56 3.28
791 793 5.453198 GGTCAGTTTGTGATTTGATTTGGGT 60.453 40.000 0.00 0.00 37.56 4.51
815 817 7.987458 GGTCTCAGGTCAAATATGTGATTTCTA 59.013 37.037 0.00 0.00 0.00 2.10
904 906 2.546789 CGTAATAAATCACCCGGCTTCC 59.453 50.000 0.00 0.00 0.00 3.46
915 917 2.273776 GGCTTCCCTGCTCCTTCC 59.726 66.667 0.00 0.00 0.00 3.46
941 943 2.108970 GTCGAGTAGTGGAATCCCCTT 58.891 52.381 0.00 0.00 35.38 3.95
988 990 4.143333 CGGGCCTCGTACTGGGTG 62.143 72.222 0.84 0.00 0.00 4.61
989 991 4.468689 GGGCCTCGTACTGGGTGC 62.469 72.222 0.84 0.00 0.00 5.01
1063 1065 1.946475 CTCCCCGGAGTTCGTCTTCC 61.946 65.000 0.73 0.00 37.47 3.46
1475 1477 1.460273 GGTGTGGATTTTGGTGCGGT 61.460 55.000 0.00 0.00 0.00 5.68
1476 1478 0.387565 GTGTGGATTTTGGTGCGGTT 59.612 50.000 0.00 0.00 0.00 4.44
1646 1651 6.238484 GCAGGTAGAAATATGTACAAAGGCAG 60.238 42.308 0.00 0.00 0.00 4.85
1703 1711 1.825090 TTGATTGCCTCGTGATGCTT 58.175 45.000 0.00 0.00 0.00 3.91
1779 1795 6.624352 ATGATTGATGAACTAATTCCGGTG 57.376 37.500 0.00 0.00 33.49 4.94
1801 1817 3.259064 GTCTCCGATGGAACGAATTTGA 58.741 45.455 0.00 0.00 35.09 2.69
1805 1821 6.036735 GTCTCCGATGGAACGAATTTGATAAA 59.963 38.462 0.00 0.00 35.09 1.40
1809 1825 5.904080 CGATGGAACGAATTTGATAAAGAGC 59.096 40.000 0.00 0.00 35.09 4.09
1881 1897 6.207691 AGTTTGGTGATAATATGGTGCAAC 57.792 37.500 0.00 0.00 0.00 4.17
1900 1916 4.414852 CAACGGAAATTCTGTATGCCTTG 58.585 43.478 8.00 0.00 34.28 3.61
1923 1939 4.025396 GTCTGATTGCGATACCAGAACATG 60.025 45.833 6.86 0.00 37.40 3.21
1949 1965 9.277783 GTAACCATCACTTCTGCTTATATTCAT 57.722 33.333 0.00 0.00 0.00 2.57
1950 1966 8.757982 AACCATCACTTCTGCTTATATTCATT 57.242 30.769 0.00 0.00 0.00 2.57
1951 1967 8.388484 ACCATCACTTCTGCTTATATTCATTC 57.612 34.615 0.00 0.00 0.00 2.67
1952 1968 7.994911 ACCATCACTTCTGCTTATATTCATTCA 59.005 33.333 0.00 0.00 0.00 2.57
1953 1969 8.504815 CCATCACTTCTGCTTATATTCATTCAG 58.495 37.037 0.00 0.00 0.00 3.02
1954 1970 9.269453 CATCACTTCTGCTTATATTCATTCAGA 57.731 33.333 0.00 0.00 0.00 3.27
1972 1988 9.958180 TCATTCAGATGTAAATTGGAGAAACTA 57.042 29.630 0.00 0.00 34.77 2.24
1975 1991 6.816640 TCAGATGTAAATTGGAGAAACTACCG 59.183 38.462 0.00 0.00 0.00 4.02
1992 2016 8.611654 AAACTACCGTGAATACTAACAATGTT 57.388 30.769 3.43 3.43 0.00 2.71
2070 2094 2.298610 GGAAGTCCCGAATTCCCAATC 58.701 52.381 11.94 0.00 46.57 2.67
2203 2227 3.365820 GCACTAGCATGTTCATTTTGTGC 59.634 43.478 13.12 13.12 41.58 4.57
2232 2256 4.496840 CGTTTTCTGGGTTACTTGTGGAAC 60.497 45.833 0.00 0.00 37.35 3.62
2524 2548 1.679139 TTTGACAGAGTTGGCAGGTG 58.321 50.000 0.00 0.00 44.87 4.00
3034 3063 3.701542 CTGGAGCAGTACTGAGGATGTAA 59.298 47.826 27.08 2.19 0.00 2.41
3226 3255 2.823154 ACTGCCTCTGTACAAGTCTCTC 59.177 50.000 0.00 0.00 0.00 3.20
3237 3266 8.807118 TCTGTACAAGTCTCTCAAATGTCTTAT 58.193 33.333 0.00 0.00 0.00 1.73
3239 3268 9.856488 TGTACAAGTCTCTCAAATGTCTTATAC 57.144 33.333 0.00 0.00 0.00 1.47
3242 3271 8.254508 ACAAGTCTCTCAAATGTCTTATACTCC 58.745 37.037 0.00 0.00 0.00 3.85
3243 3272 7.354751 AGTCTCTCAAATGTCTTATACTCCC 57.645 40.000 0.00 0.00 0.00 4.30
3244 3273 7.129425 AGTCTCTCAAATGTCTTATACTCCCT 58.871 38.462 0.00 0.00 0.00 4.20
3245 3274 7.286775 AGTCTCTCAAATGTCTTATACTCCCTC 59.713 40.741 0.00 0.00 0.00 4.30
3246 3275 6.551601 TCTCTCAAATGTCTTATACTCCCTCC 59.448 42.308 0.00 0.00 0.00 4.30
3247 3276 6.202331 TCTCAAATGTCTTATACTCCCTCCA 58.798 40.000 0.00 0.00 0.00 3.86
3248 3277 6.846505 TCTCAAATGTCTTATACTCCCTCCAT 59.153 38.462 0.00 0.00 0.00 3.41
3249 3278 7.015682 TCTCAAATGTCTTATACTCCCTCCATC 59.984 40.741 0.00 0.00 0.00 3.51
3250 3279 6.043243 TCAAATGTCTTATACTCCCTCCATCC 59.957 42.308 0.00 0.00 0.00 3.51
3251 3280 3.858135 TGTCTTATACTCCCTCCATCCC 58.142 50.000 0.00 0.00 0.00 3.85
3252 3281 3.208922 TGTCTTATACTCCCTCCATCCCA 59.791 47.826 0.00 0.00 0.00 4.37
3253 3282 4.232091 GTCTTATACTCCCTCCATCCCAA 58.768 47.826 0.00 0.00 0.00 4.12
3254 3283 4.658901 GTCTTATACTCCCTCCATCCCAAA 59.341 45.833 0.00 0.00 0.00 3.28
3255 3284 5.132144 GTCTTATACTCCCTCCATCCCAAAA 59.868 44.000 0.00 0.00 0.00 2.44
3256 3285 5.917087 TCTTATACTCCCTCCATCCCAAAAT 59.083 40.000 0.00 0.00 0.00 1.82
3257 3286 6.392842 TCTTATACTCCCTCCATCCCAAAATT 59.607 38.462 0.00 0.00 0.00 1.82
3258 3287 3.388552 ACTCCCTCCATCCCAAAATTC 57.611 47.619 0.00 0.00 0.00 2.17
3259 3288 2.929043 ACTCCCTCCATCCCAAAATTCT 59.071 45.455 0.00 0.00 0.00 2.40
3260 3289 3.337909 ACTCCCTCCATCCCAAAATTCTT 59.662 43.478 0.00 0.00 0.00 2.52
3261 3290 3.703052 CTCCCTCCATCCCAAAATTCTTG 59.297 47.826 0.00 0.00 0.00 3.02
3262 3291 3.077391 TCCCTCCATCCCAAAATTCTTGT 59.923 43.478 0.00 0.00 0.00 3.16
3263 3292 3.448660 CCCTCCATCCCAAAATTCTTGTC 59.551 47.826 0.00 0.00 0.00 3.18
3264 3293 4.347607 CCTCCATCCCAAAATTCTTGTCT 58.652 43.478 0.00 0.00 0.00 3.41
3265 3294 4.774200 CCTCCATCCCAAAATTCTTGTCTT 59.226 41.667 0.00 0.00 0.00 3.01
3266 3295 5.951747 CCTCCATCCCAAAATTCTTGTCTTA 59.048 40.000 0.00 0.00 0.00 2.10
3267 3296 6.127619 CCTCCATCCCAAAATTCTTGTCTTAC 60.128 42.308 0.00 0.00 0.00 2.34
3268 3297 6.310941 TCCATCCCAAAATTCTTGTCTTACA 58.689 36.000 0.00 0.00 0.00 2.41
3269 3298 6.953520 TCCATCCCAAAATTCTTGTCTTACAT 59.046 34.615 0.00 0.00 0.00 2.29
3270 3299 7.454380 TCCATCCCAAAATTCTTGTCTTACATT 59.546 33.333 0.00 0.00 0.00 2.71
3271 3300 8.096414 CCATCCCAAAATTCTTGTCTTACATTT 58.904 33.333 0.00 0.00 0.00 2.32
3272 3301 8.928733 CATCCCAAAATTCTTGTCTTACATTTG 58.071 33.333 0.00 0.00 0.00 2.32
3273 3302 8.017418 TCCCAAAATTCTTGTCTTACATTTGT 57.983 30.769 0.00 0.00 27.14 2.83
3274 3303 9.137459 TCCCAAAATTCTTGTCTTACATTTGTA 57.863 29.630 0.00 0.00 27.14 2.41
3275 3304 9.927668 CCCAAAATTCTTGTCTTACATTTGTAT 57.072 29.630 0.00 0.00 27.14 2.29
3303 3332 8.792831 ATACGGATGTATCTAACACTAAAACG 57.207 34.615 0.00 0.00 42.09 3.60
3304 3333 6.624423 ACGGATGTATCTAACACTAAAACGT 58.376 36.000 0.00 0.00 42.09 3.99
3305 3334 7.761409 ACGGATGTATCTAACACTAAAACGTA 58.239 34.615 0.00 0.00 42.09 3.57
3306 3335 8.243426 ACGGATGTATCTAACACTAAAACGTAA 58.757 33.333 0.00 0.00 42.09 3.18
3307 3336 8.526681 CGGATGTATCTAACACTAAAACGTAAC 58.473 37.037 0.00 0.00 42.09 2.50
3308 3337 9.578439 GGATGTATCTAACACTAAAACGTAACT 57.422 33.333 0.00 0.00 42.09 2.24
3318 3347 9.578439 AACACTAAAACGTAACTAGATACATCC 57.422 33.333 10.40 0.00 0.00 3.51
3319 3348 7.912250 ACACTAAAACGTAACTAGATACATCCG 59.088 37.037 10.40 0.00 0.00 4.18
3320 3349 7.912250 CACTAAAACGTAACTAGATACATCCGT 59.088 37.037 10.40 0.16 0.00 4.69
3321 3350 9.109393 ACTAAAACGTAACTAGATACATCCGTA 57.891 33.333 10.40 0.00 0.00 4.02
3324 3353 9.807649 AAAACGTAACTAGATACATCCGTATTT 57.192 29.630 10.40 4.25 38.48 1.40
3327 3356 9.494271 ACGTAACTAGATACATCCGTATTTAGA 57.506 33.333 13.92 0.00 41.85 2.10
3328 3357 9.752274 CGTAACTAGATACATCCGTATTTAGAC 57.248 37.037 13.92 5.26 41.85 2.59
3339 3368 9.530633 ACATCCGTATTTAGACAAATCTAAGAC 57.469 33.333 0.00 0.83 45.93 3.01
3340 3369 9.529325 CATCCGTATTTAGACAAATCTAAGACA 57.471 33.333 9.81 0.00 45.93 3.41
3342 3371 9.582431 TCCGTATTTAGACAAATCTAAGACAAG 57.418 33.333 9.81 3.88 45.93 3.16
3343 3372 9.582431 CCGTATTTAGACAAATCTAAGACAAGA 57.418 33.333 9.81 0.00 45.93 3.02
3351 3380 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
3352 3381 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
3353 3382 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
3354 3383 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
3355 3384 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
3356 3385 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
3357 3386 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
3358 3387 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
3359 3388 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
3360 3389 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
3361 3390 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
3421 3450 6.815089 TGGATAATTTTGCAACAGTTTCACT 58.185 32.000 0.00 0.00 0.00 3.41
3493 3522 5.710613 TTCATTTTGTCTTCGGCAAAAAC 57.289 34.783 9.96 0.00 45.21 2.43
3498 3527 2.049526 CTTCGGCAAAAACGGGCC 60.050 61.111 0.00 0.00 46.80 5.80
3538 3567 3.542969 AACTTGGCCTTCTTTGGGTAT 57.457 42.857 3.32 0.00 0.00 2.73
3547 3576 2.734755 TCTTTGGGTATGATGGGCAG 57.265 50.000 0.00 0.00 0.00 4.85
3621 3650 3.243501 TGCTTTTCACTTCAACTCATGCC 60.244 43.478 0.00 0.00 0.00 4.40
3629 3658 2.014335 TCAACTCATGCCGACAGATG 57.986 50.000 0.00 0.00 0.00 2.90
3640 3669 1.603802 CCGACAGATGTGTGCAACTTT 59.396 47.619 0.00 0.00 36.88 2.66
3652 3681 6.625362 TGTGTGCAACTTTTTGAGATAAACA 58.375 32.000 0.00 0.00 38.04 2.83
3707 3736 6.668541 TCTAAAGTTGCAATGATAGTGCTC 57.331 37.500 0.59 0.00 42.69 4.26
3711 3740 1.939974 TGCAATGATAGTGCTCGGTC 58.060 50.000 2.91 0.00 42.69 4.79
3756 3786 4.056050 TCCTTTACGTTCTTGCTTCTGAC 58.944 43.478 0.00 0.00 0.00 3.51
3758 3788 3.462483 TTACGTTCTTGCTTCTGACCA 57.538 42.857 0.00 0.00 0.00 4.02
3818 3848 5.631953 GCCTAGATAGGTGTATCCGGAGTAT 60.632 48.000 11.34 0.00 45.42 2.12
3938 3968 2.678336 GTTGATCAATCGTCTTCCCACC 59.322 50.000 12.12 0.00 0.00 4.61
3968 3998 2.568956 AGCTGTGACAGGAAGCTATGAA 59.431 45.455 15.24 0.00 45.26 2.57
4263 4293 2.436109 GCAAAGAGGGTGGAGGCA 59.564 61.111 0.00 0.00 0.00 4.75
4299 4329 3.977244 CCAAGTGTGCCGGTTGCC 61.977 66.667 1.90 0.00 40.16 4.52
4557 4591 2.027285 TCTCTCATTTCCCAACGATGCA 60.027 45.455 0.00 0.00 0.00 3.96
4558 4592 2.947652 CTCTCATTTCCCAACGATGCAT 59.052 45.455 0.00 0.00 0.00 3.96
4559 4593 2.684374 TCTCATTTCCCAACGATGCATG 59.316 45.455 2.46 0.00 0.00 4.06
4560 4594 1.134753 TCATTTCCCAACGATGCATGC 59.865 47.619 11.82 11.82 0.00 4.06
4640 4674 3.689649 GGACATGAGGTGGATTTGTACAC 59.310 47.826 0.00 0.00 36.89 2.90
4650 4697 1.885887 GATTTGTACACCTGCAGGCAA 59.114 47.619 33.06 23.88 39.32 4.52
4657 4704 0.676466 CACCTGCAGGCAACCGAATA 60.676 55.000 33.06 0.00 39.32 1.75
4694 4742 8.703604 TTTTGAATTATGACACCGTTTCAAAA 57.296 26.923 17.43 17.43 44.37 2.44
4709 4757 6.346040 CCGTTTCAAAACAAAATCATCTGAGC 60.346 38.462 6.45 0.00 38.81 4.26
4720 4768 2.379005 TCATCTGAGCGGACATAGTGT 58.621 47.619 0.00 0.00 0.00 3.55
4726 4774 2.947652 TGAGCGGACATAGTGTAGGTAC 59.052 50.000 0.00 0.00 0.00 3.34
4729 4777 4.387598 AGCGGACATAGTGTAGGTACTAG 58.612 47.826 0.00 0.00 44.14 2.57
4730 4778 3.501445 GCGGACATAGTGTAGGTACTAGG 59.499 52.174 0.00 0.00 44.14 3.02
4731 4779 4.712476 CGGACATAGTGTAGGTACTAGGT 58.288 47.826 3.28 3.28 46.98 3.08
4732 4780 5.743130 GCGGACATAGTGTAGGTACTAGGTA 60.743 48.000 3.60 0.00 45.10 3.08
4734 4782 6.939163 CGGACATAGTGTAGGTACTAGGTAAT 59.061 42.308 3.60 0.00 45.10 1.89
4735 4783 7.118971 CGGACATAGTGTAGGTACTAGGTAATC 59.881 44.444 3.60 0.00 45.10 1.75
4742 4790 9.878737 AGTGTAGGTACTAGGTAATCATATGTT 57.121 33.333 1.90 0.00 44.14 2.71
4743 4791 9.909644 GTGTAGGTACTAGGTAATCATATGTTG 57.090 37.037 1.90 0.00 44.14 3.33
4744 4792 9.085645 TGTAGGTACTAGGTAATCATATGTTGG 57.914 37.037 1.90 0.00 44.14 3.77
4745 4793 7.005709 AGGTACTAGGTAATCATATGTTGGC 57.994 40.000 1.90 0.00 36.02 4.52
4754 4803 5.954296 AATCATATGTTGGCAGTATGAGC 57.046 39.130 17.97 0.00 39.69 4.26
4773 4822 3.204418 GGCCATCTGCTTGCCTTC 58.796 61.111 0.00 0.00 42.01 3.46
4779 4829 2.286872 CATCTGCTTGCCTTCCTAGTG 58.713 52.381 0.00 0.00 0.00 2.74
4788 4838 2.027192 TGCCTTCCTAGTGTTGATGGAC 60.027 50.000 3.70 0.00 0.00 4.02
4789 4839 2.681097 GCCTTCCTAGTGTTGATGGACC 60.681 54.545 3.70 0.00 0.00 4.46
4790 4840 2.571653 CCTTCCTAGTGTTGATGGACCA 59.428 50.000 0.00 0.00 0.00 4.02
4800 4850 0.392863 TGATGGACCATTGAGCGTGG 60.393 55.000 8.78 0.00 42.55 4.94
4808 4858 0.523072 CATTGAGCGTGGAAACCCAG 59.477 55.000 0.00 0.00 33.65 4.45
4821 4871 4.783227 TGGAAACCCAGCTCTAGAGTAATT 59.217 41.667 20.75 8.04 0.00 1.40
4827 4877 7.676683 ACCCAGCTCTAGAGTAATTAAATGA 57.323 36.000 20.75 0.00 0.00 2.57
4958 5008 1.917273 TTACTCTCGCGGCATTACAC 58.083 50.000 6.13 0.00 0.00 2.90
5065 5115 2.476051 CTGAAGACGCGCGCATTT 59.524 55.556 32.58 21.43 0.00 2.32
5171 5221 0.881118 CCACCAAGATTTGACCGTGG 59.119 55.000 0.00 0.00 38.77 4.94
5181 5231 3.278668 TTTGACCGTGGTAAACTGGAA 57.721 42.857 0.00 0.00 0.00 3.53
5310 5360 3.513912 TGATTACAGAGTGGACATCGGTT 59.486 43.478 0.00 0.00 0.00 4.44
5327 5377 2.110578 GGTTGCAATTAGGCCATCCTT 58.889 47.619 5.01 0.00 40.66 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.379669 GCAAGAACGCTCCATGGATG 59.620 55.000 16.63 13.62 0.00 3.51
3 4 1.651240 CTGGCAAGAACGCTCCATGG 61.651 60.000 4.97 4.97 0.00 3.66
4 5 0.957395 ACTGGCAAGAACGCTCCATG 60.957 55.000 0.00 0.00 0.00 3.66
5 6 0.957395 CACTGGCAAGAACGCTCCAT 60.957 55.000 0.00 0.00 0.00 3.41
10 11 1.569479 GACTCCACTGGCAAGAACGC 61.569 60.000 0.00 0.00 0.00 4.84
11 12 0.249868 TGACTCCACTGGCAAGAACG 60.250 55.000 0.00 0.00 0.00 3.95
12 13 1.517242 CTGACTCCACTGGCAAGAAC 58.483 55.000 0.00 0.00 0.00 3.01
14 15 0.471780 TCCTGACTCCACTGGCAAGA 60.472 55.000 0.00 0.00 0.00 3.02
15 16 0.397941 TTCCTGACTCCACTGGCAAG 59.602 55.000 0.00 0.00 0.00 4.01
16 17 0.843309 TTTCCTGACTCCACTGGCAA 59.157 50.000 0.00 0.00 0.00 4.52
17 18 0.108585 GTTTCCTGACTCCACTGGCA 59.891 55.000 0.00 0.00 0.00 4.92
18 19 0.108585 TGTTTCCTGACTCCACTGGC 59.891 55.000 0.00 0.00 0.00 4.85
19 20 2.638480 TTGTTTCCTGACTCCACTGG 57.362 50.000 0.00 0.00 0.00 4.00
20 21 3.545703 ACTTTGTTTCCTGACTCCACTG 58.454 45.455 0.00 0.00 0.00 3.66
21 22 3.433740 GGACTTTGTTTCCTGACTCCACT 60.434 47.826 0.00 0.00 0.00 4.00
22 23 2.879026 GGACTTTGTTTCCTGACTCCAC 59.121 50.000 0.00 0.00 0.00 4.02
23 24 2.777692 AGGACTTTGTTTCCTGACTCCA 59.222 45.455 0.00 0.00 42.28 3.86
24 25 3.403968 GAGGACTTTGTTTCCTGACTCC 58.596 50.000 0.00 0.00 44.03 3.85
25 26 3.060602 CGAGGACTTTGTTTCCTGACTC 58.939 50.000 0.00 0.00 44.03 3.36
26 27 2.698797 TCGAGGACTTTGTTTCCTGACT 59.301 45.455 0.00 0.00 44.03 3.41
27 28 2.801111 GTCGAGGACTTTGTTTCCTGAC 59.199 50.000 0.00 1.28 44.03 3.51
28 29 2.432874 TGTCGAGGACTTTGTTTCCTGA 59.567 45.455 0.00 0.00 44.03 3.86
29 30 2.544267 GTGTCGAGGACTTTGTTTCCTG 59.456 50.000 0.00 0.00 44.03 3.86
30 31 2.169769 TGTGTCGAGGACTTTGTTTCCT 59.830 45.455 0.00 0.00 46.87 3.36
31 32 2.557317 TGTGTCGAGGACTTTGTTTCC 58.443 47.619 0.00 0.00 33.15 3.13
32 33 4.035208 ACATTGTGTCGAGGACTTTGTTTC 59.965 41.667 0.00 0.00 33.15 2.78
33 34 3.945285 ACATTGTGTCGAGGACTTTGTTT 59.055 39.130 0.00 0.00 33.15 2.83
34 35 3.541632 ACATTGTGTCGAGGACTTTGTT 58.458 40.909 0.00 0.00 33.15 2.83
35 36 3.194005 ACATTGTGTCGAGGACTTTGT 57.806 42.857 0.00 0.00 33.15 2.83
36 37 3.432252 GGTACATTGTGTCGAGGACTTTG 59.568 47.826 0.00 0.00 33.15 2.77
37 38 3.070446 TGGTACATTGTGTCGAGGACTTT 59.930 43.478 0.00 0.00 33.15 2.66
38 39 2.631062 TGGTACATTGTGTCGAGGACTT 59.369 45.455 0.00 0.00 33.15 3.01
39 40 2.029290 GTGGTACATTGTGTCGAGGACT 60.029 50.000 0.00 0.00 44.52 3.85
40 41 2.288579 TGTGGTACATTGTGTCGAGGAC 60.289 50.000 0.00 0.00 44.52 3.85
41 42 1.964933 TGTGGTACATTGTGTCGAGGA 59.035 47.619 0.00 0.00 44.52 3.71
42 43 2.448926 TGTGGTACATTGTGTCGAGG 57.551 50.000 0.00 0.00 44.52 4.63
43 44 5.690409 GGTATATGTGGTACATTGTGTCGAG 59.310 44.000 0.00 0.00 44.52 4.04
44 45 5.452216 GGGTATATGTGGTACATTGTGTCGA 60.452 44.000 0.00 0.00 44.52 4.20
45 46 4.748102 GGGTATATGTGGTACATTGTGTCG 59.252 45.833 0.00 0.00 44.52 4.35
46 47 5.526111 GTGGGTATATGTGGTACATTGTGTC 59.474 44.000 0.00 0.00 44.52 3.67
47 48 5.433526 GTGGGTATATGTGGTACATTGTGT 58.566 41.667 0.00 0.00 44.52 3.72
48 49 4.509970 CGTGGGTATATGTGGTACATTGTG 59.490 45.833 0.00 0.00 44.52 3.33
49 50 4.406326 TCGTGGGTATATGTGGTACATTGT 59.594 41.667 0.00 0.00 44.52 2.71
50 51 4.951254 TCGTGGGTATATGTGGTACATTG 58.049 43.478 0.00 0.00 44.52 2.82
51 52 4.502604 GCTCGTGGGTATATGTGGTACATT 60.503 45.833 0.00 0.00 44.52 2.71
52 53 3.006537 GCTCGTGGGTATATGTGGTACAT 59.993 47.826 0.00 0.00 44.52 2.29
53 54 2.363038 GCTCGTGGGTATATGTGGTACA 59.637 50.000 0.00 0.00 0.00 2.90
54 55 2.363038 TGCTCGTGGGTATATGTGGTAC 59.637 50.000 0.00 0.00 0.00 3.34
55 56 2.668625 TGCTCGTGGGTATATGTGGTA 58.331 47.619 0.00 0.00 0.00 3.25
56 57 1.491668 TGCTCGTGGGTATATGTGGT 58.508 50.000 0.00 0.00 0.00 4.16
57 58 2.224281 ACATGCTCGTGGGTATATGTGG 60.224 50.000 0.00 0.00 0.00 4.17
58 59 2.802247 CACATGCTCGTGGGTATATGTG 59.198 50.000 0.00 0.00 39.30 3.21
59 60 2.434336 ACACATGCTCGTGGGTATATGT 59.566 45.455 10.25 0.00 41.38 2.29
60 61 3.059884 GACACATGCTCGTGGGTATATG 58.940 50.000 10.25 0.00 41.38 1.78
61 62 2.965831 AGACACATGCTCGTGGGTATAT 59.034 45.455 10.25 0.00 41.38 0.86
62 63 2.100749 CAGACACATGCTCGTGGGTATA 59.899 50.000 10.25 0.00 41.38 1.47
63 64 1.134699 CAGACACATGCTCGTGGGTAT 60.135 52.381 10.25 0.00 41.38 2.73
64 65 0.246360 CAGACACATGCTCGTGGGTA 59.754 55.000 10.25 0.00 41.38 3.69
65 66 1.004560 CAGACACATGCTCGTGGGT 60.005 57.895 10.25 0.00 41.38 4.51
66 67 1.742880 CCAGACACATGCTCGTGGG 60.743 63.158 10.25 0.00 41.38 4.61
67 68 0.107993 ATCCAGACACATGCTCGTGG 60.108 55.000 10.25 0.00 41.38 4.94
68 69 1.284657 GATCCAGACACATGCTCGTG 58.715 55.000 0.00 4.75 42.81 4.35
69 70 0.897621 TGATCCAGACACATGCTCGT 59.102 50.000 0.00 0.00 0.00 4.18
70 71 1.284657 GTGATCCAGACACATGCTCG 58.715 55.000 0.00 0.00 38.05 5.03
71 72 2.391616 TGTGATCCAGACACATGCTC 57.608 50.000 0.00 0.00 42.20 4.26
77 78 4.134379 ACTGATGATGTGATCCAGACAC 57.866 45.455 0.00 0.00 38.55 3.67
78 79 4.510571 CAACTGATGATGTGATCCAGACA 58.489 43.478 0.00 0.00 0.00 3.41
79 80 3.311871 GCAACTGATGATGTGATCCAGAC 59.688 47.826 0.00 0.00 0.00 3.51
80 81 3.054948 TGCAACTGATGATGTGATCCAGA 60.055 43.478 0.00 0.00 0.00 3.86
81 82 3.275999 TGCAACTGATGATGTGATCCAG 58.724 45.455 0.00 0.00 0.00 3.86
82 83 3.353370 TGCAACTGATGATGTGATCCA 57.647 42.857 0.00 0.00 0.00 3.41
83 84 3.252701 GGATGCAACTGATGATGTGATCC 59.747 47.826 0.00 0.00 0.00 3.36
84 85 3.059120 CGGATGCAACTGATGATGTGATC 60.059 47.826 0.00 0.00 0.00 2.92
85 86 2.876550 CGGATGCAACTGATGATGTGAT 59.123 45.455 0.00 0.00 0.00 3.06
86 87 2.282407 CGGATGCAACTGATGATGTGA 58.718 47.619 0.00 0.00 0.00 3.58
87 88 1.332686 CCGGATGCAACTGATGATGTG 59.667 52.381 4.03 0.00 0.00 3.21
88 89 1.210234 TCCGGATGCAACTGATGATGT 59.790 47.619 0.00 0.00 0.00 3.06
89 90 1.871676 CTCCGGATGCAACTGATGATG 59.128 52.381 3.57 0.00 0.00 3.07
90 91 1.202734 CCTCCGGATGCAACTGATGAT 60.203 52.381 3.57 0.00 0.00 2.45
91 92 0.178767 CCTCCGGATGCAACTGATGA 59.821 55.000 3.57 0.00 0.00 2.92
92 93 0.816825 CCCTCCGGATGCAACTGATG 60.817 60.000 3.57 0.00 0.00 3.07
93 94 1.528824 CCCTCCGGATGCAACTGAT 59.471 57.895 3.57 0.00 0.00 2.90
94 95 2.989639 CCCTCCGGATGCAACTGA 59.010 61.111 3.57 0.00 0.00 3.41
95 96 2.825836 GCCCTCCGGATGCAACTG 60.826 66.667 18.42 0.00 0.00 3.16
96 97 3.329889 TGCCCTCCGGATGCAACT 61.330 61.111 22.43 0.00 30.85 3.16
97 98 3.134127 GTGCCCTCCGGATGCAAC 61.134 66.667 25.25 17.07 36.65 4.17
98 99 4.776322 CGTGCCCTCCGGATGCAA 62.776 66.667 25.25 10.92 36.65 4.08
111 112 0.388006 AAAATAACTTGGCGGCGTGC 60.388 50.000 9.37 0.00 45.38 5.34
112 113 1.068885 TCAAAATAACTTGGCGGCGTG 60.069 47.619 9.37 1.50 0.00 5.34
113 114 1.240256 TCAAAATAACTTGGCGGCGT 58.760 45.000 9.37 0.00 0.00 5.68
114 115 2.339728 TTCAAAATAACTTGGCGGCG 57.660 45.000 0.51 0.51 0.00 6.46
115 116 3.186909 GGATTCAAAATAACTTGGCGGC 58.813 45.455 0.00 0.00 0.00 6.53
116 117 4.173256 GTGGATTCAAAATAACTTGGCGG 58.827 43.478 0.00 0.00 0.00 6.13
117 118 3.851403 CGTGGATTCAAAATAACTTGGCG 59.149 43.478 0.00 0.00 0.00 5.69
118 119 4.621034 CACGTGGATTCAAAATAACTTGGC 59.379 41.667 7.95 0.00 0.00 4.52
119 120 6.007936 TCACGTGGATTCAAAATAACTTGG 57.992 37.500 17.00 0.00 0.00 3.61
120 121 7.358352 GCTTTCACGTGGATTCAAAATAACTTG 60.358 37.037 17.00 0.00 0.00 3.16
121 122 6.640907 GCTTTCACGTGGATTCAAAATAACTT 59.359 34.615 17.00 0.00 0.00 2.66
122 123 6.149633 GCTTTCACGTGGATTCAAAATAACT 58.850 36.000 17.00 0.00 0.00 2.24
123 124 5.918011 TGCTTTCACGTGGATTCAAAATAAC 59.082 36.000 17.00 1.71 0.00 1.89
124 125 6.078202 TGCTTTCACGTGGATTCAAAATAA 57.922 33.333 17.00 0.00 0.00 1.40
125 126 5.697473 TGCTTTCACGTGGATTCAAAATA 57.303 34.783 17.00 0.00 0.00 1.40
126 127 4.549458 CTGCTTTCACGTGGATTCAAAAT 58.451 39.130 17.00 0.00 0.00 1.82
127 128 3.795150 GCTGCTTTCACGTGGATTCAAAA 60.795 43.478 17.00 6.69 0.00 2.44
128 129 2.287547 GCTGCTTTCACGTGGATTCAAA 60.288 45.455 17.00 7.43 0.00 2.69
129 130 1.266718 GCTGCTTTCACGTGGATTCAA 59.733 47.619 17.00 0.00 0.00 2.69
130 131 0.874390 GCTGCTTTCACGTGGATTCA 59.126 50.000 17.00 7.03 0.00 2.57
131 132 1.129437 GAGCTGCTTTCACGTGGATTC 59.871 52.381 17.00 2.12 0.00 2.52
132 133 1.160137 GAGCTGCTTTCACGTGGATT 58.840 50.000 17.00 0.00 0.00 3.01
133 134 0.674895 GGAGCTGCTTTCACGTGGAT 60.675 55.000 17.00 0.00 0.00 3.41
134 135 1.301716 GGAGCTGCTTTCACGTGGA 60.302 57.895 17.00 3.16 0.00 4.02
135 136 2.671177 CGGAGCTGCTTTCACGTGG 61.671 63.158 17.00 0.08 0.00 4.94
136 137 2.671177 CCGGAGCTGCTTTCACGTG 61.671 63.158 9.94 9.94 0.00 4.49
137 138 2.357517 CCGGAGCTGCTTTCACGT 60.358 61.111 2.53 0.00 0.00 4.49
138 139 3.793144 GCCGGAGCTGCTTTCACG 61.793 66.667 5.05 6.80 35.50 4.35
148 149 3.927481 AAAGGAAGGCAGCCGGAGC 62.927 63.158 5.05 8.51 40.32 4.70
149 150 1.746991 GAAAGGAAGGCAGCCGGAG 60.747 63.158 5.05 0.00 0.00 4.63
150 151 2.351276 GAAAGGAAGGCAGCCGGA 59.649 61.111 5.05 0.00 0.00 5.14
151 152 2.751837 GGAAAGGAAGGCAGCCGG 60.752 66.667 5.55 0.00 0.00 6.13
152 153 2.751837 GGGAAAGGAAGGCAGCCG 60.752 66.667 5.55 0.00 0.00 5.52
153 154 1.379176 GAGGGAAAGGAAGGCAGCC 60.379 63.158 1.84 1.84 0.00 4.85
154 155 0.038890 AAGAGGGAAAGGAAGGCAGC 59.961 55.000 0.00 0.00 0.00 5.25
155 156 1.632920 AGAAGAGGGAAAGGAAGGCAG 59.367 52.381 0.00 0.00 0.00 4.85
156 157 1.747444 AGAAGAGGGAAAGGAAGGCA 58.253 50.000 0.00 0.00 0.00 4.75
157 158 2.307392 AGAAGAAGAGGGAAAGGAAGGC 59.693 50.000 0.00 0.00 0.00 4.35
158 159 4.288366 AGAAGAAGAAGAGGGAAAGGAAGG 59.712 45.833 0.00 0.00 0.00 3.46
159 160 5.248248 AGAGAAGAAGAAGAGGGAAAGGAAG 59.752 44.000 0.00 0.00 0.00 3.46
160 161 5.158889 AGAGAAGAAGAAGAGGGAAAGGAA 58.841 41.667 0.00 0.00 0.00 3.36
161 162 4.757692 AGAGAAGAAGAAGAGGGAAAGGA 58.242 43.478 0.00 0.00 0.00 3.36
162 163 5.248248 AGAAGAGAAGAAGAAGAGGGAAAGG 59.752 44.000 0.00 0.00 0.00 3.11
163 164 6.358974 AGAAGAGAAGAAGAAGAGGGAAAG 57.641 41.667 0.00 0.00 0.00 2.62
164 165 5.247337 GGAGAAGAGAAGAAGAAGAGGGAAA 59.753 44.000 0.00 0.00 0.00 3.13
165 166 4.775253 GGAGAAGAGAAGAAGAAGAGGGAA 59.225 45.833 0.00 0.00 0.00 3.97
166 167 4.349365 GGAGAAGAGAAGAAGAAGAGGGA 58.651 47.826 0.00 0.00 0.00 4.20
167 168 3.450817 GGGAGAAGAGAAGAAGAAGAGGG 59.549 52.174 0.00 0.00 0.00 4.30
168 169 4.352893 AGGGAGAAGAGAAGAAGAAGAGG 58.647 47.826 0.00 0.00 0.00 3.69
169 170 4.402474 GGAGGGAGAAGAGAAGAAGAAGAG 59.598 50.000 0.00 0.00 0.00 2.85
170 171 4.045334 AGGAGGGAGAAGAGAAGAAGAAGA 59.955 45.833 0.00 0.00 0.00 2.87
171 172 4.352893 AGGAGGGAGAAGAGAAGAAGAAG 58.647 47.826 0.00 0.00 0.00 2.85
172 173 4.045334 AGAGGAGGGAGAAGAGAAGAAGAA 59.955 45.833 0.00 0.00 0.00 2.52
173 174 3.596046 AGAGGAGGGAGAAGAGAAGAAGA 59.404 47.826 0.00 0.00 0.00 2.87
174 175 3.981212 AGAGGAGGGAGAAGAGAAGAAG 58.019 50.000 0.00 0.00 0.00 2.85
175 176 4.292571 TGTAGAGGAGGGAGAAGAGAAGAA 59.707 45.833 0.00 0.00 0.00 2.52
176 177 3.853181 TGTAGAGGAGGGAGAAGAGAAGA 59.147 47.826 0.00 0.00 0.00 2.87
177 178 4.243793 TGTAGAGGAGGGAGAAGAGAAG 57.756 50.000 0.00 0.00 0.00 2.85
178 179 4.230733 TGATGTAGAGGAGGGAGAAGAGAA 59.769 45.833 0.00 0.00 0.00 2.87
179 180 3.788708 TGATGTAGAGGAGGGAGAAGAGA 59.211 47.826 0.00 0.00 0.00 3.10
180 181 4.177537 TGATGTAGAGGAGGGAGAAGAG 57.822 50.000 0.00 0.00 0.00 2.85
181 182 4.448493 GGATGATGTAGAGGAGGGAGAAGA 60.448 50.000 0.00 0.00 0.00 2.87
182 183 3.831911 GGATGATGTAGAGGAGGGAGAAG 59.168 52.174 0.00 0.00 0.00 2.85
183 184 3.469006 AGGATGATGTAGAGGAGGGAGAA 59.531 47.826 0.00 0.00 0.00 2.87
184 185 3.067470 AGGATGATGTAGAGGAGGGAGA 58.933 50.000 0.00 0.00 0.00 3.71
185 186 3.181424 TGAGGATGATGTAGAGGAGGGAG 60.181 52.174 0.00 0.00 0.00 4.30
186 187 2.791774 TGAGGATGATGTAGAGGAGGGA 59.208 50.000 0.00 0.00 0.00 4.20
187 188 3.251016 TGAGGATGATGTAGAGGAGGG 57.749 52.381 0.00 0.00 0.00 4.30
188 189 3.323403 GGTTGAGGATGATGTAGAGGAGG 59.677 52.174 0.00 0.00 0.00 4.30
189 190 4.222336 AGGTTGAGGATGATGTAGAGGAG 58.778 47.826 0.00 0.00 0.00 3.69
190 191 4.219115 GAGGTTGAGGATGATGTAGAGGA 58.781 47.826 0.00 0.00 0.00 3.71
191 192 3.005261 CGAGGTTGAGGATGATGTAGAGG 59.995 52.174 0.00 0.00 0.00 3.69
192 193 3.005261 CCGAGGTTGAGGATGATGTAGAG 59.995 52.174 0.00 0.00 0.00 2.43
193 194 2.959030 CCGAGGTTGAGGATGATGTAGA 59.041 50.000 0.00 0.00 0.00 2.59
194 195 2.695666 ACCGAGGTTGAGGATGATGTAG 59.304 50.000 0.00 0.00 0.00 2.74
195 196 2.747177 ACCGAGGTTGAGGATGATGTA 58.253 47.619 0.00 0.00 0.00 2.29
196 197 1.573108 ACCGAGGTTGAGGATGATGT 58.427 50.000 0.00 0.00 0.00 3.06
197 198 2.036475 CCTACCGAGGTTGAGGATGATG 59.964 54.545 5.36 0.00 38.16 3.07
198 199 2.091278 TCCTACCGAGGTTGAGGATGAT 60.091 50.000 9.20 0.00 44.19 2.45
199 200 1.286849 TCCTACCGAGGTTGAGGATGA 59.713 52.381 9.20 0.00 44.19 2.92
200 201 1.683917 CTCCTACCGAGGTTGAGGATG 59.316 57.143 12.74 5.60 44.19 3.51
201 202 2.030045 GCTCCTACCGAGGTTGAGGAT 61.030 57.143 12.74 0.00 44.19 3.24
202 203 0.683504 GCTCCTACCGAGGTTGAGGA 60.684 60.000 17.48 14.99 44.19 3.71
203 204 1.677637 GGCTCCTACCGAGGTTGAGG 61.678 65.000 17.48 12.20 44.19 3.86
204 205 0.970937 TGGCTCCTACCGAGGTTGAG 60.971 60.000 13.77 13.77 44.19 3.02
205 206 0.325296 ATGGCTCCTACCGAGGTTGA 60.325 55.000 0.00 0.00 44.19 3.18
206 207 1.068741 GTATGGCTCCTACCGAGGTTG 59.931 57.143 0.00 0.00 44.19 3.77
207 208 1.411041 GTATGGCTCCTACCGAGGTT 58.589 55.000 0.00 0.00 44.19 3.50
208 209 0.469518 GGTATGGCTCCTACCGAGGT 60.470 60.000 0.00 0.00 44.19 3.85
209 210 2.352817 GGTATGGCTCCTACCGAGG 58.647 63.158 0.00 0.00 45.35 4.63
213 214 3.428532 TCTTATCGGTATGGCTCCTACC 58.571 50.000 2.58 2.58 36.15 3.18
214 215 3.119424 GCTCTTATCGGTATGGCTCCTAC 60.119 52.174 0.00 0.00 0.00 3.18
215 216 3.090037 GCTCTTATCGGTATGGCTCCTA 58.910 50.000 0.00 0.00 0.00 2.94
216 217 1.896465 GCTCTTATCGGTATGGCTCCT 59.104 52.381 0.00 0.00 0.00 3.69
217 218 1.618837 TGCTCTTATCGGTATGGCTCC 59.381 52.381 0.00 0.00 0.00 4.70
218 219 3.386768 TTGCTCTTATCGGTATGGCTC 57.613 47.619 0.00 0.00 0.00 4.70
219 220 3.324846 TGATTGCTCTTATCGGTATGGCT 59.675 43.478 0.00 0.00 0.00 4.75
220 221 3.664107 TGATTGCTCTTATCGGTATGGC 58.336 45.455 0.00 0.00 0.00 4.40
221 222 5.579904 CAGATGATTGCTCTTATCGGTATGG 59.420 44.000 0.00 0.00 0.00 2.74
222 223 5.063186 GCAGATGATTGCTCTTATCGGTATG 59.937 44.000 0.00 0.00 40.89 2.39
223 224 5.174395 GCAGATGATTGCTCTTATCGGTAT 58.826 41.667 0.00 0.00 40.89 2.73
224 225 4.560128 GCAGATGATTGCTCTTATCGGTA 58.440 43.478 0.00 0.00 40.89 4.02
225 226 3.397482 GCAGATGATTGCTCTTATCGGT 58.603 45.455 0.00 0.00 40.89 4.69
246 247 2.930385 ATTCTGATGGGTGGCGCGAG 62.930 60.000 12.10 0.00 0.00 5.03
247 248 2.923426 GATTCTGATGGGTGGCGCGA 62.923 60.000 12.10 0.00 0.00 5.87
248 249 2.514592 ATTCTGATGGGTGGCGCG 60.515 61.111 0.00 0.00 0.00 6.86
249 250 2.537560 CGATTCTGATGGGTGGCGC 61.538 63.158 0.00 0.00 0.00 6.53
250 251 1.889105 CCGATTCTGATGGGTGGCG 60.889 63.158 0.00 0.00 0.00 5.69
251 252 1.224592 ACCGATTCTGATGGGTGGC 59.775 57.895 0.00 0.00 42.11 5.01
254 255 0.179000 GAGCACCGATTCTGATGGGT 59.821 55.000 0.00 0.00 44.23 4.51
255 256 0.178767 TGAGCACCGATTCTGATGGG 59.821 55.000 0.00 0.00 37.19 4.00
256 257 2.251409 ATGAGCACCGATTCTGATGG 57.749 50.000 0.00 0.00 0.00 3.51
257 258 3.721035 TGTATGAGCACCGATTCTGATG 58.279 45.455 0.00 0.00 0.00 3.07
258 259 4.613925 ATGTATGAGCACCGATTCTGAT 57.386 40.909 0.00 0.00 0.00 2.90
259 260 4.827284 TCTATGTATGAGCACCGATTCTGA 59.173 41.667 0.00 0.00 0.00 3.27
260 261 5.126396 TCTATGTATGAGCACCGATTCTG 57.874 43.478 0.00 0.00 0.00 3.02
261 262 4.219507 CCTCTATGTATGAGCACCGATTCT 59.780 45.833 0.00 0.00 0.00 2.40
262 263 4.489810 CCTCTATGTATGAGCACCGATTC 58.510 47.826 0.00 0.00 0.00 2.52
263 264 3.306364 GCCTCTATGTATGAGCACCGATT 60.306 47.826 0.00 0.00 0.00 3.34
264 265 2.232452 GCCTCTATGTATGAGCACCGAT 59.768 50.000 0.00 0.00 0.00 4.18
265 266 1.613925 GCCTCTATGTATGAGCACCGA 59.386 52.381 0.00 0.00 0.00 4.69
266 267 1.337260 GGCCTCTATGTATGAGCACCG 60.337 57.143 0.00 0.00 0.00 4.94
267 268 1.974236 AGGCCTCTATGTATGAGCACC 59.026 52.381 0.00 0.00 0.00 5.01
268 269 4.873746 TTAGGCCTCTATGTATGAGCAC 57.126 45.455 9.68 0.00 0.00 4.40
269 270 5.336770 CGATTTAGGCCTCTATGTATGAGCA 60.337 44.000 9.68 0.00 0.00 4.26
270 271 5.105716 TCGATTTAGGCCTCTATGTATGAGC 60.106 44.000 9.68 0.00 0.00 4.26
271 272 6.516739 TCGATTTAGGCCTCTATGTATGAG 57.483 41.667 9.68 0.00 0.00 2.90
272 273 5.105716 GCTCGATTTAGGCCTCTATGTATGA 60.106 44.000 9.68 0.00 0.00 2.15
273 274 5.105752 GCTCGATTTAGGCCTCTATGTATG 58.894 45.833 9.68 0.00 0.00 2.39
274 275 4.772624 TGCTCGATTTAGGCCTCTATGTAT 59.227 41.667 9.68 0.00 0.00 2.29
275 276 4.149598 TGCTCGATTTAGGCCTCTATGTA 58.850 43.478 9.68 0.00 0.00 2.29
276 277 2.965831 TGCTCGATTTAGGCCTCTATGT 59.034 45.455 9.68 0.00 0.00 2.29
277 278 3.667497 TGCTCGATTTAGGCCTCTATG 57.333 47.619 9.68 0.00 0.00 2.23
278 279 4.381411 GTTTGCTCGATTTAGGCCTCTAT 58.619 43.478 9.68 3.27 0.00 1.98
279 280 3.431766 GGTTTGCTCGATTTAGGCCTCTA 60.432 47.826 9.68 0.00 0.00 2.43
280 281 2.633488 GTTTGCTCGATTTAGGCCTCT 58.367 47.619 9.68 0.00 0.00 3.69
281 282 1.671328 GGTTTGCTCGATTTAGGCCTC 59.329 52.381 9.68 0.00 0.00 4.70
282 283 1.004277 TGGTTTGCTCGATTTAGGCCT 59.996 47.619 11.78 11.78 0.00 5.19
283 284 1.459450 TGGTTTGCTCGATTTAGGCC 58.541 50.000 0.00 0.00 0.00 5.19
284 285 3.242518 GTTTGGTTTGCTCGATTTAGGC 58.757 45.455 0.00 0.00 0.00 3.93
322 323 9.565090 CCATTCTAGAGATTTGTCCATGATTTA 57.435 33.333 0.00 0.00 0.00 1.40
373 375 6.668718 CCTACTAGGTAAACTCTTCCCTTCTT 59.331 42.308 0.00 0.00 0.00 2.52
509 511 0.954452 CCAACCAGGCAGTTCTTCAC 59.046 55.000 0.00 0.00 0.00 3.18
631 633 4.335647 CCTGGTCCAGTTGCGGCT 62.336 66.667 17.85 0.00 0.00 5.52
682 684 0.593128 CTACTGTGCAGCGCCTTTTT 59.407 50.000 2.29 0.00 0.00 1.94
760 762 5.593909 TCAAATCACAAACTGACCTGTTCAT 59.406 36.000 0.00 0.00 32.17 2.57
788 790 4.487714 TCACATATTTGACCTGAGACCC 57.512 45.455 0.00 0.00 0.00 4.46
789 791 6.825721 AGAAATCACATATTTGACCTGAGACC 59.174 38.462 0.00 0.00 0.00 3.85
791 793 7.987458 GGTAGAAATCACATATTTGACCTGAGA 59.013 37.037 0.00 0.00 0.00 3.27
904 906 0.462759 GACCAATCGGAAGGAGCAGG 60.463 60.000 6.83 0.00 35.59 4.85
941 943 0.407918 GGTTTTGATGGTGGAGGGGA 59.592 55.000 0.00 0.00 0.00 4.81
1446 1448 4.505566 CCAAAATCCACACCAGAGAGAGAA 60.506 45.833 0.00 0.00 0.00 2.87
1447 1449 3.008375 CCAAAATCCACACCAGAGAGAGA 59.992 47.826 0.00 0.00 0.00 3.10
1448 1450 3.244700 ACCAAAATCCACACCAGAGAGAG 60.245 47.826 0.00 0.00 0.00 3.20
1449 1451 2.711009 ACCAAAATCCACACCAGAGAGA 59.289 45.455 0.00 0.00 0.00 3.10
1496 1498 7.122055 TCTGCGGACCAATAAACAGATAAAATT 59.878 33.333 0.00 0.00 0.00 1.82
1497 1499 6.601613 TCTGCGGACCAATAAACAGATAAAAT 59.398 34.615 0.00 0.00 0.00 1.82
1640 1645 0.413434 ATTAACCTTGGGGCTGCCTT 59.587 50.000 19.68 6.23 35.63 4.35
1646 1651 8.473358 AAACTACATATTATTAACCTTGGGGC 57.527 34.615 0.00 0.00 35.63 5.80
1703 1711 9.797642 AATATTATGGAATCAGCAACTACATCA 57.202 29.630 0.00 0.00 0.00 3.07
1743 1751 4.875536 TCATCAATCATTCCACTGGTAACG 59.124 41.667 0.00 0.00 42.51 3.18
1744 1752 6.375455 AGTTCATCAATCATTCCACTGGTAAC 59.625 38.462 0.00 0.00 0.00 2.50
1779 1795 2.311124 AATTCGTTCCATCGGAGACC 57.689 50.000 0.00 0.00 42.51 3.85
1805 1821 7.440523 ACTTTTAAATTTGACTCATCGCTCT 57.559 32.000 0.00 0.00 0.00 4.09
1809 1825 6.586082 CCCCAACTTTTAAATTTGACTCATCG 59.414 38.462 8.95 0.00 0.00 3.84
1881 1897 3.941483 AGACAAGGCATACAGAATTTCCG 59.059 43.478 0.00 0.00 0.00 4.30
1900 1916 3.521560 TGTTCTGGTATCGCAATCAGAC 58.478 45.455 0.00 0.00 36.18 3.51
1923 1939 8.662781 TGAATATAAGCAGAAGTGATGGTTAC 57.337 34.615 0.23 0.00 41.77 2.50
1949 1965 7.333423 CGGTAGTTTCTCCAATTTACATCTGAA 59.667 37.037 0.00 0.00 0.00 3.02
1950 1966 6.816640 CGGTAGTTTCTCCAATTTACATCTGA 59.183 38.462 0.00 0.00 0.00 3.27
1951 1967 6.594159 ACGGTAGTTTCTCCAATTTACATCTG 59.406 38.462 0.00 0.00 0.00 2.90
1952 1968 6.594159 CACGGTAGTTTCTCCAATTTACATCT 59.406 38.462 0.00 0.00 0.00 2.90
1953 1969 6.592607 TCACGGTAGTTTCTCCAATTTACATC 59.407 38.462 0.00 0.00 0.00 3.06
1954 1970 6.469410 TCACGGTAGTTTCTCCAATTTACAT 58.531 36.000 0.00 0.00 0.00 2.29
1970 1986 6.592607 ACCAACATTGTTAGTATTCACGGTAG 59.407 38.462 0.86 0.00 0.00 3.18
1972 1988 5.310451 ACCAACATTGTTAGTATTCACGGT 58.690 37.500 0.86 0.00 0.00 4.83
1992 2016 3.096092 GACAGGCCATTCCAATTTACCA 58.904 45.455 5.01 0.00 37.29 3.25
2070 2094 0.108615 CCCAACTACAGACAGAGGCG 60.109 60.000 0.00 0.00 0.00 5.52
2203 2227 5.699458 ACAAGTAACCCAGAAAACGACATAG 59.301 40.000 0.00 0.00 0.00 2.23
2232 2256 4.552166 ACGAAGATGACAACCTTGTTTG 57.448 40.909 0.00 0.00 42.43 2.93
2233 2257 4.755123 CCTACGAAGATGACAACCTTGTTT 59.245 41.667 0.00 0.00 42.43 2.83
2524 2548 3.354089 TGCAGTAAAGAAAAGCAGCAC 57.646 42.857 0.00 0.00 0.00 4.40
3012 3040 2.106566 ACATCCTCAGTACTGCTCCAG 58.893 52.381 18.45 9.94 37.52 3.86
3034 3063 7.458397 TCAGTACTGATACTTTCCACCAAATT 58.542 34.615 21.74 0.00 39.80 1.82
3190 3219 7.120051 ACAGAGGCAGTAGAAGATACTTTAGA 58.880 38.462 0.00 0.00 0.00 2.10
3208 3237 3.944055 TTGAGAGACTTGTACAGAGGC 57.056 47.619 0.00 0.00 0.00 4.70
3226 3255 6.234177 GGATGGAGGGAGTATAAGACATTTG 58.766 44.000 0.00 0.00 0.00 2.32
3237 3266 4.119155 AGAATTTTGGGATGGAGGGAGTA 58.881 43.478 0.00 0.00 0.00 2.59
3238 3267 2.929043 AGAATTTTGGGATGGAGGGAGT 59.071 45.455 0.00 0.00 0.00 3.85
3239 3268 3.677156 AGAATTTTGGGATGGAGGGAG 57.323 47.619 0.00 0.00 0.00 4.30
3240 3269 3.077391 ACAAGAATTTTGGGATGGAGGGA 59.923 43.478 5.68 0.00 0.00 4.20
3241 3270 3.444029 ACAAGAATTTTGGGATGGAGGG 58.556 45.455 5.68 0.00 0.00 4.30
3242 3271 4.347607 AGACAAGAATTTTGGGATGGAGG 58.652 43.478 5.68 0.00 0.00 4.30
3243 3272 5.990120 AAGACAAGAATTTTGGGATGGAG 57.010 39.130 5.68 0.00 0.00 3.86
3244 3273 6.310941 TGTAAGACAAGAATTTTGGGATGGA 58.689 36.000 5.68 0.00 0.00 3.41
3245 3274 6.588719 TGTAAGACAAGAATTTTGGGATGG 57.411 37.500 5.68 0.00 0.00 3.51
3246 3275 8.928733 CAAATGTAAGACAAGAATTTTGGGATG 58.071 33.333 5.68 0.00 0.00 3.51
3247 3276 8.650490 ACAAATGTAAGACAAGAATTTTGGGAT 58.350 29.630 7.26 0.00 31.16 3.85
3248 3277 8.017418 ACAAATGTAAGACAAGAATTTTGGGA 57.983 30.769 7.26 0.00 31.16 4.37
3249 3278 9.927668 ATACAAATGTAAGACAAGAATTTTGGG 57.072 29.630 0.00 0.00 31.16 4.12
3277 3306 9.241317 CGTTTTAGTGTTAGATACATCCGTATT 57.759 33.333 0.00 0.00 38.48 1.89
3278 3307 8.408601 ACGTTTTAGTGTTAGATACATCCGTAT 58.591 33.333 0.00 0.00 41.16 3.06
3279 3308 7.761409 ACGTTTTAGTGTTAGATACATCCGTA 58.239 34.615 0.00 0.00 39.39 4.02
3280 3309 6.624423 ACGTTTTAGTGTTAGATACATCCGT 58.376 36.000 0.00 0.00 39.39 4.69
3281 3310 8.526681 GTTACGTTTTAGTGTTAGATACATCCG 58.473 37.037 0.00 0.00 39.39 4.18
3282 3311 9.578439 AGTTACGTTTTAGTGTTAGATACATCC 57.422 33.333 0.00 0.00 39.39 3.51
3292 3321 9.578439 GGATGTATCTAGTTACGTTTTAGTGTT 57.422 33.333 0.00 0.00 0.00 3.32
3293 3322 7.912250 CGGATGTATCTAGTTACGTTTTAGTGT 59.088 37.037 0.00 0.00 0.00 3.55
3294 3323 7.912250 ACGGATGTATCTAGTTACGTTTTAGTG 59.088 37.037 0.00 0.00 0.00 2.74
3295 3324 7.989826 ACGGATGTATCTAGTTACGTTTTAGT 58.010 34.615 0.00 3.78 0.00 2.24
3298 3327 9.807649 AAATACGGATGTATCTAGTTACGTTTT 57.192 29.630 0.00 2.11 40.42 2.43
3301 3330 9.494271 TCTAAATACGGATGTATCTAGTTACGT 57.506 33.333 5.54 5.54 40.42 3.57
3302 3331 9.752274 GTCTAAATACGGATGTATCTAGTTACG 57.248 37.037 6.50 0.00 40.42 3.18
3313 3342 9.530633 GTCTTAGATTTGTCTAAATACGGATGT 57.469 33.333 0.26 0.00 36.66 3.06
3314 3343 9.529325 TGTCTTAGATTTGTCTAAATACGGATG 57.471 33.333 0.26 0.00 36.66 3.51
3316 3345 9.582431 CTTGTCTTAGATTTGTCTAAATACGGA 57.418 33.333 0.26 0.00 36.66 4.69
3317 3346 9.582431 TCTTGTCTTAGATTTGTCTAAATACGG 57.418 33.333 0.26 0.99 36.66 4.02
3325 3354 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
3326 3355 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
3327 3356 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
3328 3357 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
3329 3358 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
3330 3359 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
3331 3360 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
3332 3361 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
3333 3362 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
3334 3363 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
3335 3364 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
3336 3365 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
3337 3366 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
3338 3367 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
3339 3368 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
3340 3369 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
3341 3370 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
3342 3371 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
3343 3372 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
3344 3373 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
3345 3374 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
3346 3375 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
3347 3376 1.961133 AAATACTCCCTCCGTCCCAA 58.039 50.000 0.00 0.00 0.00 4.12
3348 3377 2.674420 CTAAATACTCCCTCCGTCCCA 58.326 52.381 0.00 0.00 0.00 4.37
3349 3378 1.969208 CCTAAATACTCCCTCCGTCCC 59.031 57.143 0.00 0.00 0.00 4.46
3350 3379 2.954792 TCCTAAATACTCCCTCCGTCC 58.045 52.381 0.00 0.00 0.00 4.79
3351 3380 3.243334 CGTTCCTAAATACTCCCTCCGTC 60.243 52.174 0.00 0.00 0.00 4.79
3352 3381 2.692041 CGTTCCTAAATACTCCCTCCGT 59.308 50.000 0.00 0.00 0.00 4.69
3353 3382 2.035576 CCGTTCCTAAATACTCCCTCCG 59.964 54.545 0.00 0.00 0.00 4.63
3354 3383 3.303049 TCCGTTCCTAAATACTCCCTCC 58.697 50.000 0.00 0.00 0.00 4.30
3355 3384 3.321396 CCTCCGTTCCTAAATACTCCCTC 59.679 52.174 0.00 0.00 0.00 4.30
3356 3385 3.306613 CCTCCGTTCCTAAATACTCCCT 58.693 50.000 0.00 0.00 0.00 4.20
3357 3386 3.036819 ACCTCCGTTCCTAAATACTCCC 58.963 50.000 0.00 0.00 0.00 4.30
3358 3387 4.892345 ACTACCTCCGTTCCTAAATACTCC 59.108 45.833 0.00 0.00 0.00 3.85
3359 3388 7.757941 ATACTACCTCCGTTCCTAAATACTC 57.242 40.000 0.00 0.00 0.00 2.59
3360 3389 9.240734 CATATACTACCTCCGTTCCTAAATACT 57.759 37.037 0.00 0.00 0.00 2.12
3361 3390 9.018582 ACATATACTACCTCCGTTCCTAAATAC 57.981 37.037 0.00 0.00 0.00 1.89
3493 3522 0.672401 AACACATTACGTCTGGCCCG 60.672 55.000 0.00 0.00 0.00 6.13
3538 3567 1.228228 GGAGGAATGCTGCCCATCA 59.772 57.895 0.00 0.00 31.43 3.07
3547 3576 1.831580 AGAACAAGCAGGAGGAATGC 58.168 50.000 0.00 0.00 44.18 3.56
3621 3650 3.338818 AAAAGTTGCACACATCTGTCG 57.661 42.857 0.00 0.00 0.00 4.35
3629 3658 7.518731 TTGTTTATCTCAAAAAGTTGCACAC 57.481 32.000 0.00 0.00 34.50 3.82
3652 3681 7.227512 GCAGCAGTTCATTAAGTAGGTATGATT 59.772 37.037 0.00 0.00 0.00 2.57
3711 3740 1.064463 ACCATGCCACATAGGTTCAGG 60.064 52.381 0.00 0.00 40.61 3.86
3756 3786 2.034939 TGCATCACAAAACAAGCTCTGG 59.965 45.455 0.00 0.00 0.00 3.86
3758 3788 3.319972 ACATGCATCACAAAACAAGCTCT 59.680 39.130 0.00 0.00 0.00 4.09
3818 3848 4.768583 ACTTCGTACCAAACTAAACACCA 58.231 39.130 0.00 0.00 0.00 4.17
3938 3968 2.164422 TCCTGTCACAGCTTCATAGACG 59.836 50.000 0.00 0.00 32.08 4.18
3968 3998 2.116125 GGGGTCTGTGCTTGCCTT 59.884 61.111 0.00 0.00 0.00 4.35
4263 4293 2.965831 TGGTTATAGCTTGATCCTCGCT 59.034 45.455 0.00 5.90 37.77 4.93
4299 4329 2.603412 CGTTAGCGCTGTAGATCTCCTG 60.603 54.545 22.90 0.00 0.00 3.86
4640 4674 0.664761 CATATTCGGTTGCCTGCAGG 59.335 55.000 29.34 29.34 38.53 4.85
4641 4675 0.664761 CCATATTCGGTTGCCTGCAG 59.335 55.000 6.78 6.78 0.00 4.41
4642 4676 0.034574 ACCATATTCGGTTGCCTGCA 60.035 50.000 0.00 0.00 34.91 4.41
4643 4677 0.381801 CACCATATTCGGTTGCCTGC 59.618 55.000 0.00 0.00 37.07 4.85
4644 4678 0.381801 GCACCATATTCGGTTGCCTG 59.618 55.000 0.00 0.00 37.07 4.85
4645 4679 0.255890 AGCACCATATTCGGTTGCCT 59.744 50.000 0.00 0.00 37.07 4.75
4646 4680 0.663153 GAGCACCATATTCGGTTGCC 59.337 55.000 0.00 0.00 37.07 4.52
4667 4714 8.879342 TTGAAACGGTGTCATAATTCAAAAAT 57.121 26.923 1.04 0.00 34.80 1.82
4673 4720 7.687005 TTGTTTTGAAACGGTGTCATAATTC 57.313 32.000 1.04 0.00 41.74 2.17
4674 4721 8.480643 TTTTGTTTTGAAACGGTGTCATAATT 57.519 26.923 1.04 0.00 41.74 1.40
4676 4723 7.759886 TGATTTTGTTTTGAAACGGTGTCATAA 59.240 29.630 1.04 0.85 41.74 1.90
4678 4725 6.102663 TGATTTTGTTTTGAAACGGTGTCAT 58.897 32.000 1.04 0.00 41.74 3.06
4694 4742 3.057969 TGTCCGCTCAGATGATTTTGT 57.942 42.857 0.00 0.00 0.00 2.83
4709 4757 4.712476 ACCTAGTACCTACACTATGTCCG 58.288 47.826 0.00 0.00 30.78 4.79
4720 4768 7.731235 TGCCAACATATGATTACCTAGTACCTA 59.269 37.037 10.38 0.00 0.00 3.08
4726 4774 8.314021 TCATACTGCCAACATATGATTACCTAG 58.686 37.037 10.38 1.76 31.83 3.02
4729 4777 6.128172 GCTCATACTGCCAACATATGATTACC 60.128 42.308 10.38 0.00 35.37 2.85
4730 4778 6.427853 TGCTCATACTGCCAACATATGATTAC 59.572 38.462 10.38 0.00 35.37 1.89
4731 4779 6.532826 TGCTCATACTGCCAACATATGATTA 58.467 36.000 10.38 0.00 35.37 1.75
4732 4780 5.379187 TGCTCATACTGCCAACATATGATT 58.621 37.500 10.38 0.00 35.37 2.57
4734 4782 4.383173 CTGCTCATACTGCCAACATATGA 58.617 43.478 10.38 0.00 34.82 2.15
4735 4783 3.501062 CCTGCTCATACTGCCAACATATG 59.499 47.826 0.00 0.00 0.00 1.78
4738 4786 2.020694 GCCTGCTCATACTGCCAACAT 61.021 52.381 0.00 0.00 0.00 2.71
4740 4788 1.379642 GGCCTGCTCATACTGCCAAC 61.380 60.000 0.00 0.00 41.76 3.77
4741 4789 1.077501 GGCCTGCTCATACTGCCAA 60.078 57.895 0.00 0.00 41.76 4.52
4742 4790 2.591753 GGCCTGCTCATACTGCCA 59.408 61.111 0.00 0.00 41.76 4.92
4743 4791 0.888285 GATGGCCTGCTCATACTGCC 60.888 60.000 3.32 0.00 42.49 4.85
4744 4792 0.108207 AGATGGCCTGCTCATACTGC 59.892 55.000 3.32 0.00 0.00 4.40
4745 4793 1.880271 CAGATGGCCTGCTCATACTG 58.120 55.000 3.32 0.00 35.89 2.74
4767 4816 2.027192 GTCCATCAACACTAGGAAGGCA 60.027 50.000 0.00 0.00 0.00 4.75
4768 4817 2.633488 GTCCATCAACACTAGGAAGGC 58.367 52.381 0.00 0.00 0.00 4.35
4770 4819 3.981071 TGGTCCATCAACACTAGGAAG 57.019 47.619 0.00 0.00 0.00 3.46
4772 4821 3.843619 TCAATGGTCCATCAACACTAGGA 59.156 43.478 4.39 0.00 0.00 2.94
4773 4822 4.194640 CTCAATGGTCCATCAACACTAGG 58.805 47.826 4.39 0.00 0.00 3.02
4779 4829 1.131126 CACGCTCAATGGTCCATCAAC 59.869 52.381 4.39 0.00 0.00 3.18
4788 4838 0.893270 TGGGTTTCCACGCTCAATGG 60.893 55.000 0.00 0.00 38.32 3.16
4789 4839 0.523072 CTGGGTTTCCACGCTCAATG 59.477 55.000 0.00 0.00 38.32 2.82
4790 4840 1.244019 GCTGGGTTTCCACGCTCAAT 61.244 55.000 0.00 0.00 38.32 2.57
4800 4850 8.831550 CATTTAATTACTCTAGAGCTGGGTTTC 58.168 37.037 19.97 0.00 0.00 2.78
4958 5008 1.070471 GGCGCCAAACATTTGCGTAG 61.070 55.000 24.80 3.93 38.75 3.51
5065 5115 3.963476 TGGGAACTTTGGAAGGAAAGA 57.037 42.857 0.00 0.00 36.58 2.52
5171 5221 3.064931 CGACTCCTTGGTTCCAGTTTAC 58.935 50.000 0.00 0.00 0.00 2.01
5181 5231 0.042131 TATCCCCACGACTCCTTGGT 59.958 55.000 0.00 0.00 30.29 3.67
5310 5360 1.113788 GCAAGGATGGCCTAATTGCA 58.886 50.000 22.28 0.00 46.28 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.