Multiple sequence alignment - TraesCS2B01G328500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G328500 chr2B 100.000 5902 0 0 1 5902 470917944 470912043 0.000000e+00 10900.0
1 TraesCS2B01G328500 chr2B 79.708 616 90 26 5094 5685 470903770 470904374 4.260000e-111 412.0
2 TraesCS2B01G328500 chr2B 82.184 348 57 5 5531 5876 5731626 5731282 1.610000e-75 294.0
3 TraesCS2B01G328500 chr2B 77.778 360 71 8 5521 5877 17501827 17502180 4.630000e-51 213.0
4 TraesCS2B01G328500 chr2B 84.868 152 23 0 727 878 107644956 107644805 2.850000e-33 154.0
5 TraesCS2B01G328500 chr2B 84.416 154 23 1 725 877 421092296 421092143 3.680000e-32 150.0
6 TraesCS2B01G328500 chr2D 94.472 5029 189 27 900 5902 398315801 398310836 0.000000e+00 7664.0
7 TraesCS2B01G328500 chr2D 78.056 360 70 7 5521 5877 11326331 11326684 9.960000e-53 219.0
8 TraesCS2B01G328500 chr2D 90.435 115 8 3 590 702 398315947 398315834 1.330000e-31 148.0
9 TraesCS2B01G328500 chr2A 93.075 4231 196 39 1715 5902 535417654 535413478 0.000000e+00 6100.0
10 TraesCS2B01G328500 chr2A 93.261 831 34 16 900 1724 535419716 535418902 0.000000e+00 1205.0
11 TraesCS2B01G328500 chr2A 78.056 360 70 7 5521 5877 11981902 11982255 9.960000e-53 219.0
12 TraesCS2B01G328500 chr3B 86.667 150 19 1 728 876 537081499 537081648 1.320000e-36 165.0
13 TraesCS2B01G328500 chr7B 85.526 152 20 2 727 876 557749390 557749541 2.200000e-34 158.0
14 TraesCS2B01G328500 chrUn 85.430 151 21 1 727 876 121519218 121519368 7.920000e-34 156.0
15 TraesCS2B01G328500 chr6B 85.065 154 20 3 725 876 351211524 351211372 2.850000e-33 154.0
16 TraesCS2B01G328500 chr6B 84.868 152 22 1 726 876 145338659 145338508 1.020000e-32 152.0
17 TraesCS2B01G328500 chr4A 84.615 156 22 2 722 876 715356465 715356619 2.850000e-33 154.0
18 TraesCS2B01G328500 chr1B 84.314 153 22 2 727 878 25739103 25739254 1.330000e-31 148.0
19 TraesCS2B01G328500 chr1D 89.130 46 4 1 336 381 291805035 291805079 8.260000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G328500 chr2B 470912043 470917944 5901 True 10900.0 10900 100.0000 1 5902 1 chr2B.!!$R4 5901
1 TraesCS2B01G328500 chr2B 470903770 470904374 604 False 412.0 412 79.7080 5094 5685 1 chr2B.!!$F2 591
2 TraesCS2B01G328500 chr2D 398310836 398315947 5111 True 3906.0 7664 92.4535 590 5902 2 chr2D.!!$R1 5312
3 TraesCS2B01G328500 chr2A 535413478 535419716 6238 True 3652.5 6100 93.1680 900 5902 2 chr2A.!!$R1 5002

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
800 813 0.106708 ACTTCACGAGCACCACATGT 59.893 50.000 0.00 0.0 0.00 3.21 F
811 824 0.179004 ACCACATGTCCAAGCCGAAA 60.179 50.000 0.00 0.0 0.00 3.46 F
880 893 0.321671 CGACGGCCCATCCTCAATAT 59.678 55.000 0.00 0.0 0.00 1.28 F
1353 1384 0.611062 TCGTCAACGATGGGGAGACT 60.611 55.000 0.22 0.0 44.22 3.24 F
1433 1464 0.630673 TTCCTGCAATGCTGGGGTAT 59.369 50.000 27.00 0.0 45.66 2.73 F
3080 4385 1.136110 CCTTTTGTGCCGTTTGGACTT 59.864 47.619 0.00 0.0 37.49 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2170 3463 0.662619 CCGCGGACATATTTGCATGT 59.337 50.000 24.07 0.0 41.83 3.21 R
2743 4036 2.294512 CTGAGCAACCCTTTTCTCAACC 59.705 50.000 0.00 0.0 35.44 3.77 R
2796 4089 6.149807 GGACAATTCCATGTTTTGCATCAAAT 59.850 34.615 0.00 0.0 42.30 2.32 R
3179 4484 2.612212 GGTTAGTGATACCATGGTTGCG 59.388 50.000 25.38 0.0 35.67 4.85 R
3464 4770 6.520272 TCGGTAGTACTATAGTCCTTCAGAC 58.480 44.000 9.12 0.0 46.71 3.51 R
5099 6426 0.316689 CGAGGAAAACGTTGCACACC 60.317 55.000 0.00 1.5 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.264574 TCATTGGCTAGCGGCTTTT 57.735 47.368 8.26 0.00 41.46 2.27
19 20 1.094785 TCATTGGCTAGCGGCTTTTC 58.905 50.000 8.26 0.00 41.46 2.29
20 21 0.248215 CATTGGCTAGCGGCTTTTCG 60.248 55.000 8.26 0.00 41.46 3.46
28 29 2.432628 CGGCTTTTCGCTCGACCT 60.433 61.111 0.00 0.00 39.13 3.85
29 30 2.027625 CGGCTTTTCGCTCGACCTT 61.028 57.895 0.00 0.00 39.13 3.50
30 31 1.566018 CGGCTTTTCGCTCGACCTTT 61.566 55.000 0.00 0.00 39.13 3.11
31 32 0.591659 GGCTTTTCGCTCGACCTTTT 59.408 50.000 0.00 0.00 39.13 2.27
32 33 1.001706 GGCTTTTCGCTCGACCTTTTT 60.002 47.619 0.00 0.00 39.13 1.94
33 34 2.307929 GCTTTTCGCTCGACCTTTTTC 58.692 47.619 0.00 0.00 35.14 2.29
34 35 2.031944 GCTTTTCGCTCGACCTTTTTCT 60.032 45.455 0.00 0.00 35.14 2.52
35 36 3.545633 CTTTTCGCTCGACCTTTTTCTG 58.454 45.455 0.00 0.00 0.00 3.02
36 37 2.234300 TTCGCTCGACCTTTTTCTGT 57.766 45.000 0.00 0.00 0.00 3.41
37 38 2.234300 TCGCTCGACCTTTTTCTGTT 57.766 45.000 0.00 0.00 0.00 3.16
38 39 2.557317 TCGCTCGACCTTTTTCTGTTT 58.443 42.857 0.00 0.00 0.00 2.83
39 40 2.940410 TCGCTCGACCTTTTTCTGTTTT 59.060 40.909 0.00 0.00 0.00 2.43
40 41 3.035942 CGCTCGACCTTTTTCTGTTTTG 58.964 45.455 0.00 0.00 0.00 2.44
41 42 3.372060 GCTCGACCTTTTTCTGTTTTGG 58.628 45.455 0.00 0.00 0.00 3.28
42 43 3.181490 GCTCGACCTTTTTCTGTTTTGGT 60.181 43.478 0.00 0.00 0.00 3.67
43 44 4.676986 GCTCGACCTTTTTCTGTTTTGGTT 60.677 41.667 0.00 0.00 0.00 3.67
44 45 4.989044 TCGACCTTTTTCTGTTTTGGTTC 58.011 39.130 0.00 0.00 0.00 3.62
45 46 4.109766 CGACCTTTTTCTGTTTTGGTTCC 58.890 43.478 0.00 0.00 0.00 3.62
46 47 4.142249 CGACCTTTTTCTGTTTTGGTTCCT 60.142 41.667 0.00 0.00 0.00 3.36
47 48 5.066764 CGACCTTTTTCTGTTTTGGTTCCTA 59.933 40.000 0.00 0.00 0.00 2.94
48 49 6.465439 ACCTTTTTCTGTTTTGGTTCCTAG 57.535 37.500 0.00 0.00 0.00 3.02
49 50 6.192044 ACCTTTTTCTGTTTTGGTTCCTAGA 58.808 36.000 0.00 0.00 0.00 2.43
50 51 6.666113 ACCTTTTTCTGTTTTGGTTCCTAGAA 59.334 34.615 0.00 0.00 0.00 2.10
51 52 7.179516 ACCTTTTTCTGTTTTGGTTCCTAGAAA 59.820 33.333 0.00 0.00 33.72 2.52
52 53 8.038351 CCTTTTTCTGTTTTGGTTCCTAGAAAA 58.962 33.333 0.00 0.00 40.38 2.29
53 54 8.766000 TTTTTCTGTTTTGGTTCCTAGAAAAC 57.234 30.769 0.00 8.90 41.24 2.43
54 55 5.744666 TCTGTTTTGGTTCCTAGAAAACG 57.255 39.130 10.43 7.00 40.77 3.60
55 56 4.577283 TCTGTTTTGGTTCCTAGAAAACGG 59.423 41.667 14.83 14.83 43.06 4.44
56 57 4.525024 TGTTTTGGTTCCTAGAAAACGGA 58.475 39.130 10.43 0.00 40.77 4.69
57 58 4.336153 TGTTTTGGTTCCTAGAAAACGGAC 59.664 41.667 10.43 4.65 40.77 4.79
58 59 4.426736 TTTGGTTCCTAGAAAACGGACT 57.573 40.909 0.00 0.00 0.00 3.85
59 60 5.549742 TTTGGTTCCTAGAAAACGGACTA 57.450 39.130 0.00 0.00 0.00 2.59
60 61 4.525912 TGGTTCCTAGAAAACGGACTAC 57.474 45.455 0.00 0.00 0.00 2.73
61 62 3.896888 TGGTTCCTAGAAAACGGACTACA 59.103 43.478 0.00 0.00 0.00 2.74
62 63 4.344679 TGGTTCCTAGAAAACGGACTACAA 59.655 41.667 0.00 0.00 0.00 2.41
63 64 5.012354 TGGTTCCTAGAAAACGGACTACAAT 59.988 40.000 0.00 0.00 0.00 2.71
64 65 5.936372 GGTTCCTAGAAAACGGACTACAATT 59.064 40.000 0.00 0.00 0.00 2.32
65 66 6.429078 GGTTCCTAGAAAACGGACTACAATTT 59.571 38.462 0.00 0.00 0.00 1.82
66 67 7.040892 GGTTCCTAGAAAACGGACTACAATTTT 60.041 37.037 0.00 0.00 0.00 1.82
67 68 8.347771 GTTCCTAGAAAACGGACTACAATTTTT 58.652 33.333 0.00 0.00 0.00 1.94
96 97 9.878599 GCCTTTTTCCTTAATTTTAAGAAAAGC 57.121 29.630 19.42 15.00 42.05 3.51
114 115 8.776376 AGAAAAGCAAAATCAAGAAAAGTTCA 57.224 26.923 0.00 0.00 0.00 3.18
115 116 9.387257 AGAAAAGCAAAATCAAGAAAAGTTCAT 57.613 25.926 0.00 0.00 0.00 2.57
116 117 9.429600 GAAAAGCAAAATCAAGAAAAGTTCATG 57.570 29.630 0.00 0.00 0.00 3.07
117 118 8.721019 AAAGCAAAATCAAGAAAAGTTCATGA 57.279 26.923 0.00 0.00 41.04 3.07
118 119 8.721019 AAGCAAAATCAAGAAAAGTTCATGAA 57.279 26.923 3.38 3.38 40.31 2.57
119 120 8.897872 AGCAAAATCAAGAAAAGTTCATGAAT 57.102 26.923 12.12 0.00 40.31 2.57
120 121 8.985805 AGCAAAATCAAGAAAAGTTCATGAATC 58.014 29.630 12.12 5.03 40.31 2.52
121 122 8.985805 GCAAAATCAAGAAAAGTTCATGAATCT 58.014 29.630 12.12 7.44 40.31 2.40
133 134 9.820725 AAAGTTCATGAATCTGAAAAATGTTCA 57.179 25.926 12.12 0.00 36.92 3.18
134 135 9.991906 AAGTTCATGAATCTGAAAAATGTTCAT 57.008 25.926 12.12 0.00 39.39 2.57
172 173 9.826574 AATGTCTGGATTTGAAATTATTCATGG 57.173 29.630 0.00 0.00 44.70 3.66
173 174 8.592529 TGTCTGGATTTGAAATTATTCATGGA 57.407 30.769 0.00 0.00 44.70 3.41
174 175 9.204337 TGTCTGGATTTGAAATTATTCATGGAT 57.796 29.630 0.00 0.00 44.70 3.41
175 176 9.688592 GTCTGGATTTGAAATTATTCATGGATC 57.311 33.333 0.00 0.00 44.70 3.36
176 177 9.650714 TCTGGATTTGAAATTATTCATGGATCT 57.349 29.630 0.00 0.00 44.70 2.75
190 191 8.929260 ATTCATGGATCTAAAATATGTCTGCA 57.071 30.769 0.00 0.00 0.00 4.41
191 192 8.750515 TTCATGGATCTAAAATATGTCTGCAA 57.249 30.769 0.00 0.00 0.00 4.08
192 193 8.750515 TCATGGATCTAAAATATGTCTGCAAA 57.249 30.769 0.00 0.00 0.00 3.68
193 194 9.358406 TCATGGATCTAAAATATGTCTGCAAAT 57.642 29.630 0.00 0.00 0.00 2.32
194 195 9.976511 CATGGATCTAAAATATGTCTGCAAATT 57.023 29.630 0.00 0.00 0.00 1.82
243 244 9.878599 AGTTTCTGAATTTGTAAGATGTTTACG 57.121 29.630 0.00 0.00 0.00 3.18
244 245 9.872757 GTTTCTGAATTTGTAAGATGTTTACGA 57.127 29.630 0.00 0.00 0.00 3.43
277 278 8.804688 AAAATGTTCATGGATTTGCAAAAATG 57.195 26.923 17.19 18.52 0.00 2.32
278 279 7.513371 AATGTTCATGGATTTGCAAAAATGT 57.487 28.000 17.19 0.00 0.00 2.71
279 280 6.939132 TGTTCATGGATTTGCAAAAATGTT 57.061 29.167 17.19 0.00 0.00 2.71
280 281 7.330900 TGTTCATGGATTTGCAAAAATGTTT 57.669 28.000 17.19 0.00 0.00 2.83
281 282 7.769220 TGTTCATGGATTTGCAAAAATGTTTT 58.231 26.923 17.19 0.00 0.00 2.43
282 283 7.914346 TGTTCATGGATTTGCAAAAATGTTTTC 59.086 29.630 17.19 7.05 0.00 2.29
283 284 7.563888 TCATGGATTTGCAAAAATGTTTTCA 57.436 28.000 17.19 3.67 0.00 2.69
284 285 8.167605 TCATGGATTTGCAAAAATGTTTTCAT 57.832 26.923 17.19 6.07 43.05 2.57
285 286 9.281371 TCATGGATTTGCAAAAATGTTTTCATA 57.719 25.926 17.19 1.23 39.94 2.15
286 287 9.894783 CATGGATTTGCAAAAATGTTTTCATAA 57.105 25.926 17.19 0.00 39.94 1.90
288 289 9.118300 TGGATTTGCAAAAATGTTTTCATAAGT 57.882 25.926 17.19 0.00 39.94 2.24
289 290 9.949174 GGATTTGCAAAAATGTTTTCATAAGTT 57.051 25.926 17.19 0.00 39.94 2.66
316 317 6.425577 AAAATTCATGGATTGGAAATTGCG 57.574 33.333 0.00 0.00 0.00 4.85
317 318 5.341872 AATTCATGGATTGGAAATTGCGA 57.658 34.783 0.00 0.00 0.00 5.10
318 319 4.797800 TTCATGGATTGGAAATTGCGAA 57.202 36.364 0.00 0.00 0.00 4.70
319 320 5.341872 TTCATGGATTGGAAATTGCGAAT 57.658 34.783 0.00 0.00 0.00 3.34
320 321 5.341872 TCATGGATTGGAAATTGCGAATT 57.658 34.783 0.00 0.00 0.00 2.17
321 322 5.732633 TCATGGATTGGAAATTGCGAATTT 58.267 33.333 0.00 6.57 43.43 1.82
322 323 5.581479 TCATGGATTGGAAATTGCGAATTTG 59.419 36.000 10.33 0.00 40.97 2.32
323 324 4.892433 TGGATTGGAAATTGCGAATTTGT 58.108 34.783 10.33 0.00 40.97 2.83
324 325 5.303971 TGGATTGGAAATTGCGAATTTGTT 58.696 33.333 10.33 0.00 40.97 2.83
325 326 5.762218 TGGATTGGAAATTGCGAATTTGTTT 59.238 32.000 10.33 0.00 40.97 2.83
326 327 6.073331 TGGATTGGAAATTGCGAATTTGTTTC 60.073 34.615 10.33 1.15 40.97 2.78
327 328 6.073331 GGATTGGAAATTGCGAATTTGTTTCA 60.073 34.615 10.33 3.58 40.97 2.69
328 329 6.857777 TTGGAAATTGCGAATTTGTTTCAT 57.142 29.167 10.33 0.00 40.97 2.57
329 330 6.225703 TGGAAATTGCGAATTTGTTTCATG 57.774 33.333 10.33 0.00 40.97 3.07
330 331 5.987953 TGGAAATTGCGAATTTGTTTCATGA 59.012 32.000 10.33 0.00 40.97 3.07
331 332 6.481313 TGGAAATTGCGAATTTGTTTCATGAA 59.519 30.769 3.38 3.38 40.97 2.57
332 333 7.172875 TGGAAATTGCGAATTTGTTTCATGAAT 59.827 29.630 9.40 0.00 40.97 2.57
333 334 8.016801 GGAAATTGCGAATTTGTTTCATGAATT 58.983 29.630 9.40 0.00 40.97 2.17
398 399 8.655935 AAAAATGTCCTCCATCTGTAAAGAAT 57.344 30.769 0.00 0.00 31.75 2.40
399 400 8.655935 AAAATGTCCTCCATCTGTAAAGAATT 57.344 30.769 0.00 0.00 31.75 2.17
400 401 7.636150 AATGTCCTCCATCTGTAAAGAATTG 57.364 36.000 0.00 0.00 31.75 2.32
401 402 6.126863 TGTCCTCCATCTGTAAAGAATTGT 57.873 37.500 0.00 0.00 0.00 2.71
402 403 7.252612 TGTCCTCCATCTGTAAAGAATTGTA 57.747 36.000 0.00 0.00 0.00 2.41
403 404 7.685481 TGTCCTCCATCTGTAAAGAATTGTAA 58.315 34.615 0.00 0.00 0.00 2.41
404 405 7.824289 TGTCCTCCATCTGTAAAGAATTGTAAG 59.176 37.037 0.00 0.00 0.00 2.34
405 406 8.041323 GTCCTCCATCTGTAAAGAATTGTAAGA 58.959 37.037 0.00 0.00 0.00 2.10
406 407 8.260818 TCCTCCATCTGTAAAGAATTGTAAGAG 58.739 37.037 0.00 0.00 0.00 2.85
407 408 7.011857 CCTCCATCTGTAAAGAATTGTAAGAGC 59.988 40.741 0.00 0.00 0.00 4.09
408 409 6.535150 TCCATCTGTAAAGAATTGTAAGAGCG 59.465 38.462 0.00 0.00 0.00 5.03
409 410 6.313905 CCATCTGTAAAGAATTGTAAGAGCGT 59.686 38.462 0.00 0.00 0.00 5.07
410 411 6.946229 TCTGTAAAGAATTGTAAGAGCGTC 57.054 37.500 0.00 0.00 0.00 5.19
411 412 6.688578 TCTGTAAAGAATTGTAAGAGCGTCT 58.311 36.000 0.00 0.00 0.00 4.18
412 413 7.823665 TCTGTAAAGAATTGTAAGAGCGTCTA 58.176 34.615 0.00 0.00 0.00 2.59
413 414 7.968956 TCTGTAAAGAATTGTAAGAGCGTCTAG 59.031 37.037 0.00 0.00 0.00 2.43
414 415 7.600065 TGTAAAGAATTGTAAGAGCGTCTAGT 58.400 34.615 0.00 0.00 0.00 2.57
415 416 8.733458 TGTAAAGAATTGTAAGAGCGTCTAGTA 58.267 33.333 0.00 0.00 0.00 1.82
416 417 9.008289 GTAAAGAATTGTAAGAGCGTCTAGTAC 57.992 37.037 0.00 0.00 0.00 2.73
417 418 6.754702 AGAATTGTAAGAGCGTCTAGTACA 57.245 37.500 0.00 0.00 0.00 2.90
418 419 7.336161 AGAATTGTAAGAGCGTCTAGTACAT 57.664 36.000 0.00 0.00 0.00 2.29
419 420 7.773149 AGAATTGTAAGAGCGTCTAGTACATT 58.227 34.615 0.00 0.00 0.00 2.71
420 421 7.916450 AGAATTGTAAGAGCGTCTAGTACATTC 59.084 37.037 0.00 0.00 0.00 2.67
421 422 6.505044 TTGTAAGAGCGTCTAGTACATTCA 57.495 37.500 0.00 0.00 0.00 2.57
422 423 6.694877 TGTAAGAGCGTCTAGTACATTCAT 57.305 37.500 0.00 0.00 0.00 2.57
423 424 7.096884 TGTAAGAGCGTCTAGTACATTCATT 57.903 36.000 0.00 0.00 0.00 2.57
424 425 7.544622 TGTAAGAGCGTCTAGTACATTCATTT 58.455 34.615 0.00 0.00 0.00 2.32
425 426 8.033038 TGTAAGAGCGTCTAGTACATTCATTTT 58.967 33.333 0.00 0.00 0.00 1.82
426 427 9.512435 GTAAGAGCGTCTAGTACATTCATTTTA 57.488 33.333 0.00 0.00 0.00 1.52
427 428 8.997621 AAGAGCGTCTAGTACATTCATTTTAA 57.002 30.769 0.00 0.00 0.00 1.52
428 429 8.997621 AGAGCGTCTAGTACATTCATTTTAAA 57.002 30.769 0.00 0.00 0.00 1.52
429 430 9.431887 AGAGCGTCTAGTACATTCATTTTAAAA 57.568 29.630 2.51 2.51 0.00 1.52
527 528 3.643159 AAAACCAGGCGTGAAATCTTC 57.357 42.857 8.24 0.00 0.00 2.87
528 529 2.568623 AACCAGGCGTGAAATCTTCT 57.431 45.000 8.24 0.00 0.00 2.85
529 530 1.813513 ACCAGGCGTGAAATCTTCTG 58.186 50.000 8.24 0.00 0.00 3.02
530 531 1.089920 CCAGGCGTGAAATCTTCTGG 58.910 55.000 8.24 0.00 36.28 3.86
531 532 1.339055 CCAGGCGTGAAATCTTCTGGA 60.339 52.381 8.24 0.00 43.05 3.86
532 533 2.426522 CAGGCGTGAAATCTTCTGGAA 58.573 47.619 0.00 0.00 0.00 3.53
533 534 3.012518 CAGGCGTGAAATCTTCTGGAAT 58.987 45.455 0.00 0.00 0.00 3.01
534 535 3.064545 CAGGCGTGAAATCTTCTGGAATC 59.935 47.826 0.00 0.00 0.00 2.52
535 536 3.054802 AGGCGTGAAATCTTCTGGAATCT 60.055 43.478 0.00 0.00 0.00 2.40
536 537 3.691609 GGCGTGAAATCTTCTGGAATCTT 59.308 43.478 0.00 0.00 0.00 2.40
537 538 4.201861 GGCGTGAAATCTTCTGGAATCTTC 60.202 45.833 0.00 0.00 0.00 2.87
538 539 4.393062 GCGTGAAATCTTCTGGAATCTTCA 59.607 41.667 0.00 0.00 0.00 3.02
539 540 5.672321 GCGTGAAATCTTCTGGAATCTTCAC 60.672 44.000 14.99 14.99 37.97 3.18
540 541 5.409520 CGTGAAATCTTCTGGAATCTTCACA 59.590 40.000 19.82 0.00 39.44 3.58
541 542 6.073058 CGTGAAATCTTCTGGAATCTTCACAA 60.073 38.462 19.82 0.00 39.44 3.33
542 543 7.520453 CGTGAAATCTTCTGGAATCTTCACAAA 60.520 37.037 19.82 0.00 39.44 2.83
543 544 8.137437 GTGAAATCTTCTGGAATCTTCACAAAA 58.863 33.333 17.54 0.00 39.37 2.44
544 545 8.137437 TGAAATCTTCTGGAATCTTCACAAAAC 58.863 33.333 0.00 0.00 0.00 2.43
545 546 6.581171 ATCTTCTGGAATCTTCACAAAACC 57.419 37.500 0.00 0.00 0.00 3.27
546 547 4.515191 TCTTCTGGAATCTTCACAAAACCG 59.485 41.667 0.00 0.00 0.00 4.44
547 548 3.815809 TCTGGAATCTTCACAAAACCGT 58.184 40.909 0.00 0.00 0.00 4.83
548 549 4.204012 TCTGGAATCTTCACAAAACCGTT 58.796 39.130 0.00 0.00 0.00 4.44
549 550 4.274950 TCTGGAATCTTCACAAAACCGTTC 59.725 41.667 0.00 0.00 0.00 3.95
550 551 4.204012 TGGAATCTTCACAAAACCGTTCT 58.796 39.130 0.00 0.00 0.00 3.01
551 552 4.274950 TGGAATCTTCACAAAACCGTTCTC 59.725 41.667 0.00 0.00 0.00 2.87
552 553 4.455124 GAATCTTCACAAAACCGTTCTCG 58.545 43.478 0.00 0.00 0.00 4.04
553 554 1.595794 TCTTCACAAAACCGTTCTCGC 59.404 47.619 0.00 0.00 35.54 5.03
554 555 1.597663 CTTCACAAAACCGTTCTCGCT 59.402 47.619 0.00 0.00 35.54 4.93
555 556 2.512485 TCACAAAACCGTTCTCGCTA 57.488 45.000 0.00 0.00 35.54 4.26
556 557 2.400399 TCACAAAACCGTTCTCGCTAG 58.600 47.619 0.00 0.00 35.54 3.42
557 558 2.034939 TCACAAAACCGTTCTCGCTAGA 59.965 45.455 0.00 0.00 35.54 2.43
558 559 2.408704 CACAAAACCGTTCTCGCTAGAG 59.591 50.000 0.00 0.00 45.69 2.43
567 568 3.197614 TCGCTAGAGAAGGGCACG 58.802 61.111 0.00 0.00 38.04 5.34
568 569 2.583593 CGCTAGAGAAGGGCACGC 60.584 66.667 0.00 0.00 0.00 5.34
569 570 2.583593 GCTAGAGAAGGGCACGCG 60.584 66.667 3.53 3.53 0.00 6.01
570 571 2.105128 CTAGAGAAGGGCACGCGG 59.895 66.667 12.47 0.00 0.00 6.46
571 572 3.432051 CTAGAGAAGGGCACGCGGG 62.432 68.421 12.47 7.92 0.00 6.13
580 581 3.127533 GCACGCGGGCAGAAGAAT 61.128 61.111 31.74 0.00 0.00 2.40
581 582 2.690778 GCACGCGGGCAGAAGAATT 61.691 57.895 31.74 0.00 0.00 2.17
582 583 1.366111 GCACGCGGGCAGAAGAATTA 61.366 55.000 31.74 0.00 0.00 1.40
583 584 1.299541 CACGCGGGCAGAAGAATTAT 58.700 50.000 12.47 0.00 0.00 1.28
584 585 1.261619 CACGCGGGCAGAAGAATTATC 59.738 52.381 12.47 0.00 0.00 1.75
585 586 0.868406 CGCGGGCAGAAGAATTATCC 59.132 55.000 0.00 0.00 0.00 2.59
586 587 1.810031 CGCGGGCAGAAGAATTATCCA 60.810 52.381 0.00 0.00 0.00 3.41
587 588 2.297701 GCGGGCAGAAGAATTATCCAA 58.702 47.619 0.00 0.00 0.00 3.53
588 589 2.291741 GCGGGCAGAAGAATTATCCAAG 59.708 50.000 0.00 0.00 0.00 3.61
595 596 1.972872 AGAATTATCCAAGCCCAGCG 58.027 50.000 0.00 0.00 0.00 5.18
636 639 2.743928 GCTCCTCCGCCACAACAG 60.744 66.667 0.00 0.00 0.00 3.16
720 733 5.364157 ACCGGCAGAGTAGATATTTCTTTCT 59.636 40.000 0.00 0.00 33.17 2.52
721 734 6.127026 ACCGGCAGAGTAGATATTTCTTTCTT 60.127 38.462 0.00 0.00 33.17 2.52
722 735 6.763610 CCGGCAGAGTAGATATTTCTTTCTTT 59.236 38.462 0.00 0.00 33.17 2.52
723 736 7.042389 CCGGCAGAGTAGATATTTCTTTCTTTC 60.042 40.741 0.00 0.00 33.17 2.62
724 737 7.708752 CGGCAGAGTAGATATTTCTTTCTTTCT 59.291 37.037 0.00 0.00 33.17 2.52
750 763 4.551702 AAAATAAGACCAACCCAATGGC 57.448 40.909 0.00 0.00 44.75 4.40
751 764 3.473113 AATAAGACCAACCCAATGGCT 57.527 42.857 0.00 0.00 44.75 4.75
752 765 4.601406 AATAAGACCAACCCAATGGCTA 57.399 40.909 0.00 0.00 44.75 3.93
753 766 2.990740 AAGACCAACCCAATGGCTAA 57.009 45.000 0.00 0.00 44.75 3.09
754 767 3.473113 AAGACCAACCCAATGGCTAAT 57.527 42.857 0.00 0.00 44.75 1.73
755 768 2.738743 AGACCAACCCAATGGCTAATG 58.261 47.619 0.00 0.00 44.75 1.90
756 769 1.136891 GACCAACCCAATGGCTAATGC 59.863 52.381 0.00 0.00 44.75 3.56
757 770 1.273211 ACCAACCCAATGGCTAATGCT 60.273 47.619 0.00 0.00 44.75 3.79
758 771 1.832998 CCAACCCAATGGCTAATGCTT 59.167 47.619 0.00 0.00 39.59 3.91
759 772 3.030291 CCAACCCAATGGCTAATGCTTA 58.970 45.455 0.00 0.00 39.59 3.09
760 773 3.642848 CCAACCCAATGGCTAATGCTTAT 59.357 43.478 0.00 0.00 39.59 1.73
761 774 4.101430 CCAACCCAATGGCTAATGCTTATT 59.899 41.667 0.00 0.00 39.59 1.40
762 775 4.942761 ACCCAATGGCTAATGCTTATTG 57.057 40.909 0.00 0.00 40.18 1.90
764 777 3.656559 CCAATGGCTAATGCTTATTGGC 58.343 45.455 17.25 5.02 46.01 4.52
765 778 3.069872 CCAATGGCTAATGCTTATTGGCA 59.930 43.478 17.25 3.09 46.01 4.92
792 805 7.956420 TTTTATAGAAGAAACTTCACGAGCA 57.044 32.000 12.86 0.00 0.00 4.26
793 806 6.946229 TTATAGAAGAAACTTCACGAGCAC 57.054 37.500 12.86 0.00 0.00 4.40
794 807 2.484889 AGAAGAAACTTCACGAGCACC 58.515 47.619 12.86 0.00 0.00 5.01
795 808 2.158957 AGAAGAAACTTCACGAGCACCA 60.159 45.455 12.86 0.00 0.00 4.17
796 809 1.583054 AGAAACTTCACGAGCACCAC 58.417 50.000 0.00 0.00 0.00 4.16
797 810 1.134521 AGAAACTTCACGAGCACCACA 60.135 47.619 0.00 0.00 0.00 4.17
798 811 1.873591 GAAACTTCACGAGCACCACAT 59.126 47.619 0.00 0.00 0.00 3.21
799 812 1.229428 AACTTCACGAGCACCACATG 58.771 50.000 0.00 0.00 0.00 3.21
800 813 0.106708 ACTTCACGAGCACCACATGT 59.893 50.000 0.00 0.00 0.00 3.21
801 814 0.792640 CTTCACGAGCACCACATGTC 59.207 55.000 0.00 0.00 0.00 3.06
802 815 0.602638 TTCACGAGCACCACATGTCC 60.603 55.000 0.00 0.00 0.00 4.02
803 816 1.301637 CACGAGCACCACATGTCCA 60.302 57.895 0.00 0.00 0.00 4.02
804 817 0.884259 CACGAGCACCACATGTCCAA 60.884 55.000 0.00 0.00 0.00 3.53
805 818 0.603707 ACGAGCACCACATGTCCAAG 60.604 55.000 0.00 0.00 0.00 3.61
806 819 1.878775 GAGCACCACATGTCCAAGC 59.121 57.895 0.00 0.00 0.00 4.01
807 820 1.589716 GAGCACCACATGTCCAAGCC 61.590 60.000 0.00 0.00 0.00 4.35
808 821 2.981560 GCACCACATGTCCAAGCCG 61.982 63.158 0.00 0.00 0.00 5.52
809 822 1.302431 CACCACATGTCCAAGCCGA 60.302 57.895 0.00 0.00 0.00 5.54
810 823 0.888736 CACCACATGTCCAAGCCGAA 60.889 55.000 0.00 0.00 0.00 4.30
811 824 0.179004 ACCACATGTCCAAGCCGAAA 60.179 50.000 0.00 0.00 0.00 3.46
812 825 0.958091 CCACATGTCCAAGCCGAAAA 59.042 50.000 0.00 0.00 0.00 2.29
813 826 1.545582 CCACATGTCCAAGCCGAAAAT 59.454 47.619 0.00 0.00 0.00 1.82
814 827 2.029110 CCACATGTCCAAGCCGAAAATT 60.029 45.455 0.00 0.00 0.00 1.82
815 828 2.988493 CACATGTCCAAGCCGAAAATTG 59.012 45.455 0.00 0.00 0.00 2.32
816 829 2.890311 ACATGTCCAAGCCGAAAATTGA 59.110 40.909 0.00 0.00 0.00 2.57
817 830 3.320541 ACATGTCCAAGCCGAAAATTGAA 59.679 39.130 0.00 0.00 0.00 2.69
818 831 3.363341 TGTCCAAGCCGAAAATTGAAC 57.637 42.857 0.00 0.00 0.00 3.18
819 832 2.955660 TGTCCAAGCCGAAAATTGAACT 59.044 40.909 0.00 0.00 0.00 3.01
820 833 3.383185 TGTCCAAGCCGAAAATTGAACTT 59.617 39.130 0.00 0.00 0.00 2.66
821 834 3.735746 GTCCAAGCCGAAAATTGAACTTG 59.264 43.478 0.00 0.00 35.43 3.16
822 835 3.634448 TCCAAGCCGAAAATTGAACTTGA 59.366 39.130 0.00 0.00 37.32 3.02
823 836 4.098654 TCCAAGCCGAAAATTGAACTTGAA 59.901 37.500 0.00 0.00 37.32 2.69
824 837 4.990426 CCAAGCCGAAAATTGAACTTGAAT 59.010 37.500 0.00 0.00 37.32 2.57
825 838 5.107375 CCAAGCCGAAAATTGAACTTGAATG 60.107 40.000 0.00 0.00 37.32 2.67
826 839 5.452078 AGCCGAAAATTGAACTTGAATGA 57.548 34.783 0.00 0.00 0.00 2.57
827 840 5.841810 AGCCGAAAATTGAACTTGAATGAA 58.158 33.333 0.00 0.00 0.00 2.57
828 841 6.458210 AGCCGAAAATTGAACTTGAATGAAT 58.542 32.000 0.00 0.00 0.00 2.57
829 842 6.930722 AGCCGAAAATTGAACTTGAATGAATT 59.069 30.769 0.00 0.00 0.00 2.17
830 843 8.087750 AGCCGAAAATTGAACTTGAATGAATTA 58.912 29.630 0.00 0.00 0.00 1.40
831 844 8.375465 GCCGAAAATTGAACTTGAATGAATTAG 58.625 33.333 0.00 0.00 0.00 1.73
832 845 8.375465 CCGAAAATTGAACTTGAATGAATTAGC 58.625 33.333 0.00 0.00 0.00 3.09
833 846 8.914654 CGAAAATTGAACTTGAATGAATTAGCA 58.085 29.630 0.00 0.00 0.00 3.49
835 848 7.823149 AATTGAACTTGAATGAATTAGCAGC 57.177 32.000 0.00 0.00 0.00 5.25
836 849 5.963176 TGAACTTGAATGAATTAGCAGCA 57.037 34.783 0.00 0.00 0.00 4.41
837 850 6.330004 TGAACTTGAATGAATTAGCAGCAA 57.670 33.333 0.00 0.00 0.00 3.91
838 851 6.151691 TGAACTTGAATGAATTAGCAGCAAC 58.848 36.000 0.00 0.00 0.00 4.17
839 852 5.064441 ACTTGAATGAATTAGCAGCAACC 57.936 39.130 0.00 0.00 0.00 3.77
840 853 4.768968 ACTTGAATGAATTAGCAGCAACCT 59.231 37.500 0.00 0.00 0.00 3.50
841 854 4.970662 TGAATGAATTAGCAGCAACCTC 57.029 40.909 0.00 0.00 0.00 3.85
842 855 4.334552 TGAATGAATTAGCAGCAACCTCA 58.665 39.130 0.00 0.00 0.00 3.86
843 856 4.397103 TGAATGAATTAGCAGCAACCTCAG 59.603 41.667 0.00 0.00 0.00 3.35
844 857 2.086869 TGAATTAGCAGCAACCTCAGC 58.913 47.619 0.00 0.00 0.00 4.26
845 858 2.290514 TGAATTAGCAGCAACCTCAGCT 60.291 45.455 0.00 0.00 44.62 4.24
850 863 3.573229 AGCAACCTCAGCTGCCCA 61.573 61.111 9.47 0.00 41.61 5.36
851 864 3.060615 GCAACCTCAGCTGCCCAG 61.061 66.667 9.47 0.70 32.18 4.45
875 888 4.222847 GGTCGACGGCCCATCCTC 62.223 72.222 7.42 0.00 0.00 3.71
876 889 3.458163 GTCGACGGCCCATCCTCA 61.458 66.667 0.00 0.00 0.00 3.86
877 890 2.682136 TCGACGGCCCATCCTCAA 60.682 61.111 0.00 0.00 0.00 3.02
878 891 2.063979 TCGACGGCCCATCCTCAAT 61.064 57.895 0.00 0.00 0.00 2.57
879 892 0.757561 TCGACGGCCCATCCTCAATA 60.758 55.000 0.00 0.00 0.00 1.90
880 893 0.321671 CGACGGCCCATCCTCAATAT 59.678 55.000 0.00 0.00 0.00 1.28
881 894 1.270839 CGACGGCCCATCCTCAATATT 60.271 52.381 0.00 0.00 0.00 1.28
882 895 2.810400 CGACGGCCCATCCTCAATATTT 60.810 50.000 0.00 0.00 0.00 1.40
883 896 2.814336 GACGGCCCATCCTCAATATTTC 59.186 50.000 0.00 0.00 0.00 2.17
884 897 2.443255 ACGGCCCATCCTCAATATTTCT 59.557 45.455 0.00 0.00 0.00 2.52
885 898 3.117512 ACGGCCCATCCTCAATATTTCTT 60.118 43.478 0.00 0.00 0.00 2.52
886 899 3.891366 CGGCCCATCCTCAATATTTCTTT 59.109 43.478 0.00 0.00 0.00 2.52
887 900 4.022849 CGGCCCATCCTCAATATTTCTTTC 60.023 45.833 0.00 0.00 0.00 2.62
888 901 5.143369 GGCCCATCCTCAATATTTCTTTCT 58.857 41.667 0.00 0.00 0.00 2.52
889 902 5.600069 GGCCCATCCTCAATATTTCTTTCTT 59.400 40.000 0.00 0.00 0.00 2.52
890 903 6.462067 GGCCCATCCTCAATATTTCTTTCTTG 60.462 42.308 0.00 0.00 0.00 3.02
891 904 6.322201 GCCCATCCTCAATATTTCTTTCTTGA 59.678 38.462 0.00 0.00 0.00 3.02
892 905 7.469732 GCCCATCCTCAATATTTCTTTCTTGAG 60.470 40.741 4.56 4.56 42.61 3.02
893 906 7.559170 CCCATCCTCAATATTTCTTTCTTGAGT 59.441 37.037 9.52 0.00 41.82 3.41
894 907 8.964772 CCATCCTCAATATTTCTTTCTTGAGTT 58.035 33.333 9.52 0.00 41.82 3.01
896 909 9.972106 ATCCTCAATATTTCTTTCTTGAGTTCT 57.028 29.630 9.52 0.00 41.82 3.01
897 910 9.442047 TCCTCAATATTTCTTTCTTGAGTTCTC 57.558 33.333 9.52 0.00 41.82 2.87
898 911 9.224267 CCTCAATATTTCTTTCTTGAGTTCTCA 57.776 33.333 9.52 0.00 41.82 3.27
999 1012 1.131638 AACCTCTCACCTCTGCACAA 58.868 50.000 0.00 0.00 0.00 3.33
1001 1014 1.701847 ACCTCTCACCTCTGCACAAAT 59.298 47.619 0.00 0.00 0.00 2.32
1002 1015 2.082231 CCTCTCACCTCTGCACAAATG 58.918 52.381 0.00 0.00 0.00 2.32
1003 1016 2.289882 CCTCTCACCTCTGCACAAATGA 60.290 50.000 0.00 0.00 0.00 2.57
1227 1254 2.282887 ACGGGTGGCAATTGGGTC 60.283 61.111 7.72 0.00 0.00 4.46
1228 1255 2.035626 CGGGTGGCAATTGGGTCT 59.964 61.111 7.72 0.00 0.00 3.85
1229 1256 2.046285 CGGGTGGCAATTGGGTCTC 61.046 63.158 7.72 0.00 0.00 3.36
1353 1384 0.611062 TCGTCAACGATGGGGAGACT 60.611 55.000 0.22 0.00 44.22 3.24
1433 1464 0.630673 TTCCTGCAATGCTGGGGTAT 59.369 50.000 27.00 0.00 45.66 2.73
1507 1538 6.769134 TCTACTGGATTGTACAAGATCGAA 57.231 37.500 14.65 0.00 0.00 3.71
1657 1688 8.097038 GGAATGAAGGTATGCTGATACAGAATA 58.903 37.037 2.81 0.00 36.85 1.75
1691 1727 9.231297 TCTATATTTCTTGGTTTGGAAAGTCAG 57.769 33.333 0.00 0.00 35.37 3.51
1726 1762 9.139174 GTTTTTGGTATAATGAACATTGACAGG 57.861 33.333 9.87 0.00 32.50 4.00
1768 3061 9.474313 AACCTAAACCTGCATCTGAATATTTTA 57.526 29.630 0.00 0.00 0.00 1.52
1843 3136 1.210478 GGGAGGACTGCTGATGCTTTA 59.790 52.381 0.00 0.00 40.48 1.85
1892 3185 5.989777 CGGGAGGTATGGTTTATCAGTTAAG 59.010 44.000 0.00 0.00 0.00 1.85
1898 3191 8.157476 AGGTATGGTTTATCAGTTAAGCTATGG 58.843 37.037 0.00 0.00 0.00 2.74
1927 3220 8.565896 TGAATGTTTCTGTATGTTCTTAGCAT 57.434 30.769 0.00 0.00 0.00 3.79
1972 3265 3.866651 TGCTGCCTTCTAGATTGAAGAC 58.133 45.455 5.73 0.00 44.40 3.01
1987 3280 6.832384 AGATTGAAGACCATGAAATAGCACAT 59.168 34.615 0.00 0.00 0.00 3.21
2170 3463 6.055588 CCTCTCACCTTTCTTTGTGACTAAA 58.944 40.000 0.00 0.00 36.62 1.85
2686 3979 5.127031 AGAGTTCTTAGGCTCTGCTTCTAAG 59.873 44.000 0.00 0.00 40.24 2.18
2796 4089 5.690865 CCAAGTTGAGGTATAGCCCAATAA 58.309 41.667 3.87 0.00 38.26 1.40
2887 4180 3.869912 GCTTCTTGAAGCTACCATGGACA 60.870 47.826 21.47 4.53 42.32 4.02
2923 4216 8.564574 GGTCATCTTAATGCGGTCATATTTTTA 58.435 33.333 0.00 0.00 32.58 1.52
3037 4331 5.023452 AGGTCATCAGGTGTCACAAGTATA 58.977 41.667 5.12 0.00 0.00 1.47
3042 4336 9.547753 GTCATCAGGTGTCACAAGTATATTTAT 57.452 33.333 5.12 0.00 0.00 1.40
3080 4385 1.136110 CCTTTTGTGCCGTTTGGACTT 59.864 47.619 0.00 0.00 37.49 3.01
3101 4406 7.148018 GGACTTCATGATTCTAAAAATCTGGCA 60.148 37.037 0.00 0.00 0.00 4.92
3155 4460 7.333921 ACAGTCATTGAGCTGAAAGATAAGAAG 59.666 37.037 17.51 0.00 34.07 2.85
3179 4484 5.449725 GCTGAGAATTGAAGATGCCCTTAAC 60.450 44.000 0.00 0.00 34.68 2.01
3238 4543 1.335597 TGCGAGGTTCTGTGAAGTACG 60.336 52.381 0.00 0.00 0.00 3.67
3404 4710 7.613801 AGGTAACATACTATGGTTTCATTTGCA 59.386 33.333 1.11 0.00 41.41 4.08
3462 4768 5.014333 TGGCCCTAATTACCACTGTAGAAAA 59.986 40.000 0.00 0.00 0.00 2.29
3464 4770 6.039382 GGCCCTAATTACCACTGTAGAAAATG 59.961 42.308 0.00 0.00 0.00 2.32
3526 4832 6.879962 TGAGCACACATTACTAAACGTTTAC 58.120 36.000 16.59 3.59 0.00 2.01
3632 4938 1.002468 GGCAACATCATCCCGATTTCG 60.002 52.381 0.00 0.00 39.44 3.46
3652 4958 2.175202 GTTGCACAATTACCCCATCCA 58.825 47.619 0.00 0.00 0.00 3.41
3694 5000 1.235724 GAAGTACCCCAGTGCACAAC 58.764 55.000 21.04 6.96 0.00 3.32
3757 5064 6.588204 TCAGTATTCCAAAATGCCGTACTAT 58.412 36.000 0.00 0.00 0.00 2.12
3768 5075 7.817418 AAATGCCGTACTATACATGGATTTT 57.183 32.000 0.00 0.00 31.75 1.82
3816 5123 0.376152 GCTGTGTGCAATCTCGATGG 59.624 55.000 0.00 0.00 42.31 3.51
3842 5149 5.862323 TCGACTAGCTCTTTACATTGTGTTC 59.138 40.000 0.00 0.00 0.00 3.18
3853 5160 3.813443 ACATTGTGTTCTTGCAGAGACT 58.187 40.909 0.00 0.00 33.02 3.24
3876 5185 3.941483 GGGTACTTGGTGTCATCTTGATG 59.059 47.826 4.35 4.35 0.00 3.07
3968 5277 8.719596 TCCTACTCTGGCTCCTTATATCTATAG 58.280 40.741 0.00 0.00 0.00 1.31
4057 5366 1.209504 TGGCCTACTGGTGCAACTATC 59.790 52.381 2.04 0.00 36.74 2.08
4130 5439 3.301794 TCCATGGATACTGCAGCAATT 57.698 42.857 15.27 0.00 37.61 2.32
4131 5440 2.953648 TCCATGGATACTGCAGCAATTG 59.046 45.455 15.27 0.00 37.61 2.32
4148 5457 8.733458 GCAGCAATTGATATATAGTTTGGATGA 58.267 33.333 10.34 0.00 0.00 2.92
4328 5637 1.935933 AAGGTTACCAATAGCGAGCG 58.064 50.000 3.51 0.00 0.00 5.03
4345 5654 0.442699 GCGGTAGCTCTTTTGGTTCG 59.557 55.000 0.00 0.00 41.01 3.95
4467 5779 2.097304 TGCAAGTTATGGCTACAATGCG 59.903 45.455 0.00 0.00 34.99 4.73
4532 5844 5.016831 GGACCCATCAAAGGTTAGTGAAAT 58.983 41.667 0.00 0.00 37.88 2.17
4544 5856 9.753674 AAAGGTTAGTGAAATAATGATGGAAGA 57.246 29.630 0.00 0.00 0.00 2.87
4549 5861 7.047460 AGTGAAATAATGATGGAAGAATGGC 57.953 36.000 0.00 0.00 0.00 4.40
4561 5873 7.784073 TGATGGAAGAATGGCTAAAATAATCCA 59.216 33.333 0.00 0.00 37.61 3.41
4571 5883 6.772716 TGGCTAAAATAATCCAATGTCTCTCC 59.227 38.462 0.00 0.00 0.00 3.71
4606 5918 1.378531 TAACGCTGAATGGCATCACC 58.621 50.000 0.00 0.00 39.84 4.02
4733 6045 1.211190 GGAGGCGCAAGAAAGCAAG 59.789 57.895 10.83 0.00 43.02 4.01
4743 6055 2.903547 GAAAGCAAGCCGGTTCGCA 61.904 57.895 3.39 0.00 33.06 5.10
4770 6082 1.289244 CCCAATGCCCCCTAGGAACT 61.289 60.000 11.48 0.00 46.37 3.01
4820 6132 9.116067 GGTAACAACTATATTTGCACCTTCATA 57.884 33.333 14.90 0.00 34.34 2.15
4918 6245 1.978782 GTAGCATGCACGCTTTTGTTC 59.021 47.619 14.57 0.00 43.56 3.18
4934 6261 1.072489 TGTTCGGAGCCACCACAAATA 59.928 47.619 0.00 0.00 38.90 1.40
4935 6262 2.290641 TGTTCGGAGCCACCACAAATAT 60.291 45.455 0.00 0.00 38.90 1.28
4936 6263 2.036958 TCGGAGCCACCACAAATATG 57.963 50.000 0.00 0.00 38.90 1.78
4937 6264 1.024271 CGGAGCCACCACAAATATGG 58.976 55.000 0.00 0.00 46.10 2.74
4946 6273 3.830744 CCACAAATATGGTACCGAGGA 57.169 47.619 7.57 0.00 34.77 3.71
4947 6274 3.463944 CCACAAATATGGTACCGAGGAC 58.536 50.000 7.57 0.00 34.77 3.85
4948 6275 3.118555 CCACAAATATGGTACCGAGGACA 60.119 47.826 7.57 0.00 34.77 4.02
4949 6276 4.444306 CCACAAATATGGTACCGAGGACAT 60.444 45.833 7.57 0.00 34.77 3.06
4950 6277 4.511454 CACAAATATGGTACCGAGGACATG 59.489 45.833 7.57 3.13 0.00 3.21
4951 6278 4.407621 ACAAATATGGTACCGAGGACATGA 59.592 41.667 7.57 0.00 0.00 3.07
4952 6279 5.104693 ACAAATATGGTACCGAGGACATGAA 60.105 40.000 7.57 0.00 0.00 2.57
4953 6280 5.623956 AATATGGTACCGAGGACATGAAA 57.376 39.130 7.57 0.00 0.00 2.69
4954 6281 3.992943 ATGGTACCGAGGACATGAAAA 57.007 42.857 7.57 0.00 0.00 2.29
4963 6290 0.826062 GGACATGAAAATGCCTGGGG 59.174 55.000 0.00 0.00 0.00 4.96
4983 6310 4.505742 GGGGTGAATAATTTTGTGGGCAAA 60.506 41.667 0.00 0.00 42.25 3.68
4998 6325 4.641989 GTGGGCAAATCTGTCAAGATATGT 59.358 41.667 0.00 0.00 42.60 2.29
5000 6327 4.037208 GGGCAAATCTGTCAAGATATGTGG 59.963 45.833 0.00 0.00 42.60 4.17
5001 6328 4.037208 GGCAAATCTGTCAAGATATGTGGG 59.963 45.833 0.00 0.00 42.60 4.61
5002 6329 4.641989 GCAAATCTGTCAAGATATGTGGGT 59.358 41.667 0.00 0.00 42.60 4.51
5003 6330 5.822519 GCAAATCTGTCAAGATATGTGGGTA 59.177 40.000 0.00 0.00 42.60 3.69
5004 6331 6.488006 GCAAATCTGTCAAGATATGTGGGTAT 59.512 38.462 0.00 0.00 42.60 2.73
5005 6332 7.013655 GCAAATCTGTCAAGATATGTGGGTATT 59.986 37.037 0.00 0.00 42.60 1.89
5006 6333 8.562892 CAAATCTGTCAAGATATGTGGGTATTC 58.437 37.037 0.00 0.00 42.60 1.75
5007 6334 5.842907 TCTGTCAAGATATGTGGGTATTCG 58.157 41.667 0.00 0.00 0.00 3.34
5008 6335 5.596772 TCTGTCAAGATATGTGGGTATTCGA 59.403 40.000 0.00 0.00 0.00 3.71
5009 6336 5.842907 TGTCAAGATATGTGGGTATTCGAG 58.157 41.667 0.00 0.00 0.00 4.04
5010 6337 5.362717 TGTCAAGATATGTGGGTATTCGAGT 59.637 40.000 0.00 0.00 0.00 4.18
5011 6338 5.692204 GTCAAGATATGTGGGTATTCGAGTG 59.308 44.000 0.00 0.00 0.00 3.51
5012 6339 5.362717 TCAAGATATGTGGGTATTCGAGTGT 59.637 40.000 0.00 0.00 0.00 3.55
5013 6340 6.548251 TCAAGATATGTGGGTATTCGAGTGTA 59.452 38.462 0.00 0.00 0.00 2.90
5014 6341 6.576662 AGATATGTGGGTATTCGAGTGTAG 57.423 41.667 0.00 0.00 0.00 2.74
5015 6342 2.953466 TGTGGGTATTCGAGTGTAGC 57.047 50.000 0.00 0.00 0.00 3.58
5016 6343 2.172679 TGTGGGTATTCGAGTGTAGCA 58.827 47.619 0.00 0.00 0.00 3.49
5017 6344 2.764010 TGTGGGTATTCGAGTGTAGCAT 59.236 45.455 0.00 0.00 0.00 3.79
5018 6345 3.196901 TGTGGGTATTCGAGTGTAGCATT 59.803 43.478 0.00 0.00 0.00 3.56
5019 6346 4.189231 GTGGGTATTCGAGTGTAGCATTT 58.811 43.478 0.00 0.00 0.00 2.32
5020 6347 4.634443 GTGGGTATTCGAGTGTAGCATTTT 59.366 41.667 0.00 0.00 0.00 1.82
5021 6348 5.123344 GTGGGTATTCGAGTGTAGCATTTTT 59.877 40.000 0.00 0.00 0.00 1.94
5099 6426 4.465446 TCCTCCTCCTCAGGCCGG 62.465 72.222 0.00 0.00 40.12 6.13
5144 6478 4.823157 GAGAAGAACTCAAGAAGGTACCC 58.177 47.826 8.74 0.00 44.36 3.69
5157 6491 3.000819 TACCCACCAGAGTGCCCG 61.001 66.667 0.00 0.00 43.09 6.13
5188 6522 0.725117 CGGGAAATTCGTACAGGCAC 59.275 55.000 0.00 0.00 0.00 5.01
5212 6546 1.394917 CACTACAGCTGCGGTTCAATC 59.605 52.381 15.27 0.00 0.00 2.67
5262 6603 5.603596 GCAAATAGCATCCCATCATTTTGA 58.396 37.500 0.00 0.00 44.79 2.69
5443 6800 3.714391 CACATCTCATGATCGAGAAGCA 58.286 45.455 0.00 0.00 44.92 3.91
5745 7118 0.252881 TCATCTCCTTGGGACCTGCT 60.253 55.000 0.00 0.00 0.00 4.24
5870 7243 3.036084 CCGCACGTTGAAGTCGCT 61.036 61.111 0.00 0.00 0.00 4.93
5898 7271 2.644992 GTGGTTTCGCCCAGCAAG 59.355 61.111 0.00 0.00 34.43 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.094785 GAAAAGCCGCTAGCCAATGA 58.905 50.000 9.66 0.00 45.47 2.57
1 2 0.248215 CGAAAAGCCGCTAGCCAATG 60.248 55.000 9.66 0.00 45.47 2.82
2 3 2.098293 CGAAAAGCCGCTAGCCAAT 58.902 52.632 9.66 0.00 45.47 3.16
3 4 3.573558 CGAAAAGCCGCTAGCCAA 58.426 55.556 9.66 0.00 45.47 4.52
14 15 3.002348 ACAGAAAAAGGTCGAGCGAAAAG 59.998 43.478 9.28 0.36 0.00 2.27
15 16 2.940410 ACAGAAAAAGGTCGAGCGAAAA 59.060 40.909 9.28 0.00 0.00 2.29
16 17 2.557317 ACAGAAAAAGGTCGAGCGAAA 58.443 42.857 9.28 0.00 0.00 3.46
17 18 2.234300 ACAGAAAAAGGTCGAGCGAA 57.766 45.000 9.28 0.00 0.00 4.70
18 19 2.234300 AACAGAAAAAGGTCGAGCGA 57.766 45.000 9.28 0.00 0.00 4.93
19 20 3.035942 CAAAACAGAAAAAGGTCGAGCG 58.964 45.455 9.28 0.00 0.00 5.03
20 21 3.181490 ACCAAAACAGAAAAAGGTCGAGC 60.181 43.478 6.48 6.48 0.00 5.03
21 22 4.632538 ACCAAAACAGAAAAAGGTCGAG 57.367 40.909 0.00 0.00 0.00 4.04
22 23 4.142337 GGAACCAAAACAGAAAAAGGTCGA 60.142 41.667 0.00 0.00 0.00 4.20
23 24 4.109766 GGAACCAAAACAGAAAAAGGTCG 58.890 43.478 0.00 0.00 0.00 4.79
24 25 5.339008 AGGAACCAAAACAGAAAAAGGTC 57.661 39.130 0.00 0.00 0.00 3.85
25 26 6.192044 TCTAGGAACCAAAACAGAAAAAGGT 58.808 36.000 0.00 0.00 0.00 3.50
26 27 6.709018 TCTAGGAACCAAAACAGAAAAAGG 57.291 37.500 0.00 0.00 0.00 3.11
27 28 8.869897 GTTTTCTAGGAACCAAAACAGAAAAAG 58.130 33.333 8.42 0.00 41.22 2.27
28 29 7.542824 CGTTTTCTAGGAACCAAAACAGAAAAA 59.457 33.333 13.85 0.00 41.22 1.94
29 30 7.030768 CGTTTTCTAGGAACCAAAACAGAAAA 58.969 34.615 13.85 0.00 39.12 2.29
30 31 6.404954 CCGTTTTCTAGGAACCAAAACAGAAA 60.405 38.462 13.85 0.00 39.12 2.52
31 32 5.066764 CCGTTTTCTAGGAACCAAAACAGAA 59.933 40.000 13.85 0.00 39.12 3.02
32 33 4.577283 CCGTTTTCTAGGAACCAAAACAGA 59.423 41.667 13.85 0.00 39.12 3.41
33 34 4.577283 TCCGTTTTCTAGGAACCAAAACAG 59.423 41.667 13.85 5.88 39.12 3.16
34 35 4.336153 GTCCGTTTTCTAGGAACCAAAACA 59.664 41.667 13.85 0.00 39.12 2.83
35 36 4.577693 AGTCCGTTTTCTAGGAACCAAAAC 59.422 41.667 6.64 6.64 38.41 2.43
36 37 4.784177 AGTCCGTTTTCTAGGAACCAAAA 58.216 39.130 0.00 0.00 38.41 2.44
37 38 4.426736 AGTCCGTTTTCTAGGAACCAAA 57.573 40.909 0.00 0.00 38.41 3.28
38 39 4.344679 TGTAGTCCGTTTTCTAGGAACCAA 59.655 41.667 0.00 0.00 38.41 3.67
39 40 3.896888 TGTAGTCCGTTTTCTAGGAACCA 59.103 43.478 0.00 0.00 38.41 3.67
40 41 4.525912 TGTAGTCCGTTTTCTAGGAACC 57.474 45.455 0.00 0.00 38.41 3.62
41 42 7.430992 AAATTGTAGTCCGTTTTCTAGGAAC 57.569 36.000 0.00 0.00 38.41 3.62
42 43 8.454570 AAAAATTGTAGTCCGTTTTCTAGGAA 57.545 30.769 0.00 0.00 38.41 3.36
70 71 9.878599 GCTTTTCTTAAAATTAAGGAAAAAGGC 57.121 29.630 23.80 18.60 43.80 4.35
88 89 9.218440 TGAACTTTTCTTGATTTTGCTTTTCTT 57.782 25.926 0.00 0.00 0.00 2.52
89 90 8.776376 TGAACTTTTCTTGATTTTGCTTTTCT 57.224 26.923 0.00 0.00 0.00 2.52
90 91 9.429600 CATGAACTTTTCTTGATTTTGCTTTTC 57.570 29.630 0.00 0.00 37.08 2.29
91 92 9.165035 TCATGAACTTTTCTTGATTTTGCTTTT 57.835 25.926 0.00 0.00 38.46 2.27
92 93 8.721019 TCATGAACTTTTCTTGATTTTGCTTT 57.279 26.923 0.00 0.00 38.46 3.51
93 94 8.721019 TTCATGAACTTTTCTTGATTTTGCTT 57.279 26.923 3.38 0.00 41.58 3.91
94 95 8.897872 ATTCATGAACTTTTCTTGATTTTGCT 57.102 26.923 11.07 0.00 41.58 3.91
95 96 8.985805 AGATTCATGAACTTTTCTTGATTTTGC 58.014 29.630 11.07 0.00 41.58 3.68
107 108 9.820725 TGAACATTTTTCAGATTCATGAACTTT 57.179 25.926 11.07 0.00 38.87 2.66
108 109 9.991906 ATGAACATTTTTCAGATTCATGAACTT 57.008 25.926 11.07 0.00 38.87 2.66
146 147 9.826574 CCATGAATAATTTCAAATCCAGACATT 57.173 29.630 0.00 0.00 44.70 2.71
147 148 9.204337 TCCATGAATAATTTCAAATCCAGACAT 57.796 29.630 0.00 0.00 44.70 3.06
148 149 8.592529 TCCATGAATAATTTCAAATCCAGACA 57.407 30.769 0.00 0.00 44.70 3.41
149 150 9.688592 GATCCATGAATAATTTCAAATCCAGAC 57.311 33.333 0.00 0.00 44.70 3.51
150 151 9.650714 AGATCCATGAATAATTTCAAATCCAGA 57.349 29.630 0.00 0.00 44.70 3.86
165 166 8.929260 TGCAGACATATTTTAGATCCATGAAT 57.071 30.769 0.00 0.00 0.00 2.57
166 167 8.750515 TTGCAGACATATTTTAGATCCATGAA 57.249 30.769 0.00 0.00 0.00 2.57
167 168 8.750515 TTTGCAGACATATTTTAGATCCATGA 57.249 30.769 0.00 0.00 0.00 3.07
168 169 9.976511 AATTTGCAGACATATTTTAGATCCATG 57.023 29.630 0.00 0.00 0.00 3.66
217 218 9.878599 CGTAAACATCTTACAAATTCAGAAACT 57.121 29.630 0.00 0.00 0.00 2.66
218 219 9.872757 TCGTAAACATCTTACAAATTCAGAAAC 57.127 29.630 0.00 0.00 0.00 2.78
251 252 9.250624 CATTTTTGCAAATCCATGAACATTTTT 57.749 25.926 13.65 0.00 29.41 1.94
252 253 8.414778 ACATTTTTGCAAATCCATGAACATTTT 58.585 25.926 23.33 5.96 29.41 1.82
253 254 7.942990 ACATTTTTGCAAATCCATGAACATTT 58.057 26.923 23.33 6.46 29.41 2.32
254 255 7.513371 ACATTTTTGCAAATCCATGAACATT 57.487 28.000 23.33 6.96 29.41 2.71
255 256 7.513371 AACATTTTTGCAAATCCATGAACAT 57.487 28.000 23.33 10.56 29.41 2.71
256 257 6.939132 AACATTTTTGCAAATCCATGAACA 57.061 29.167 23.33 2.73 29.41 3.18
257 258 7.914346 TGAAAACATTTTTGCAAATCCATGAAC 59.086 29.630 23.33 14.86 29.41 3.18
258 259 7.993101 TGAAAACATTTTTGCAAATCCATGAA 58.007 26.923 23.33 12.05 29.41 2.57
259 260 7.563888 TGAAAACATTTTTGCAAATCCATGA 57.436 28.000 23.33 4.61 29.41 3.07
260 261 9.894783 TTATGAAAACATTTTTGCAAATCCATG 57.105 25.926 13.65 16.63 33.68 3.66
262 263 9.118300 ACTTATGAAAACATTTTTGCAAATCCA 57.882 25.926 13.65 0.47 33.68 3.41
263 264 9.949174 AACTTATGAAAACATTTTTGCAAATCC 57.051 25.926 13.65 0.00 33.68 3.01
292 293 6.654161 TCGCAATTTCCAATCCATGAATTTTT 59.346 30.769 0.00 0.00 0.00 1.94
293 294 6.171921 TCGCAATTTCCAATCCATGAATTTT 58.828 32.000 0.00 0.00 0.00 1.82
294 295 5.732633 TCGCAATTTCCAATCCATGAATTT 58.267 33.333 0.00 0.00 0.00 1.82
295 296 5.341872 TCGCAATTTCCAATCCATGAATT 57.658 34.783 0.00 0.00 0.00 2.17
296 297 5.341872 TTCGCAATTTCCAATCCATGAAT 57.658 34.783 0.00 0.00 0.00 2.57
297 298 4.797800 TTCGCAATTTCCAATCCATGAA 57.202 36.364 0.00 0.00 0.00 2.57
298 299 5.341872 AATTCGCAATTTCCAATCCATGA 57.658 34.783 0.00 0.00 0.00 3.07
299 300 5.352016 ACAAATTCGCAATTTCCAATCCATG 59.648 36.000 4.52 0.00 38.97 3.66
300 301 5.490159 ACAAATTCGCAATTTCCAATCCAT 58.510 33.333 4.52 0.00 38.97 3.41
301 302 4.892433 ACAAATTCGCAATTTCCAATCCA 58.108 34.783 4.52 0.00 38.97 3.41
302 303 5.861222 AACAAATTCGCAATTTCCAATCC 57.139 34.783 4.52 0.00 38.97 3.01
303 304 6.886307 TGAAACAAATTCGCAATTTCCAATC 58.114 32.000 4.52 3.36 41.18 2.67
304 305 6.857777 TGAAACAAATTCGCAATTTCCAAT 57.142 29.167 4.52 0.00 41.18 3.16
305 306 6.481313 TCATGAAACAAATTCGCAATTTCCAA 59.519 30.769 0.00 0.00 41.18 3.53
306 307 5.987953 TCATGAAACAAATTCGCAATTTCCA 59.012 32.000 0.00 0.00 41.18 3.53
307 308 6.464895 TCATGAAACAAATTCGCAATTTCC 57.535 33.333 0.00 0.00 41.18 3.13
308 309 8.938047 AATTCATGAAACAAATTCGCAATTTC 57.062 26.923 13.09 0.00 41.18 2.17
373 374 8.655935 ATTCTTTACAGATGGAGGACATTTTT 57.344 30.769 0.00 0.00 40.72 1.94
374 375 8.526147 CAATTCTTTACAGATGGAGGACATTTT 58.474 33.333 0.00 0.00 40.72 1.82
375 376 7.671398 ACAATTCTTTACAGATGGAGGACATTT 59.329 33.333 0.00 0.00 40.72 2.32
376 377 7.177878 ACAATTCTTTACAGATGGAGGACATT 58.822 34.615 0.00 0.00 40.72 2.71
377 378 6.725364 ACAATTCTTTACAGATGGAGGACAT 58.275 36.000 0.00 0.00 44.18 3.06
378 379 6.126863 ACAATTCTTTACAGATGGAGGACA 57.873 37.500 0.00 0.00 0.00 4.02
379 380 8.041323 TCTTACAATTCTTTACAGATGGAGGAC 58.959 37.037 0.00 0.00 0.00 3.85
380 381 8.146053 TCTTACAATTCTTTACAGATGGAGGA 57.854 34.615 0.00 0.00 0.00 3.71
381 382 7.011857 GCTCTTACAATTCTTTACAGATGGAGG 59.988 40.741 0.00 0.00 0.00 4.30
382 383 7.254252 CGCTCTTACAATTCTTTACAGATGGAG 60.254 40.741 0.00 0.00 0.00 3.86
383 384 6.535150 CGCTCTTACAATTCTTTACAGATGGA 59.465 38.462 0.00 0.00 0.00 3.41
384 385 6.313905 ACGCTCTTACAATTCTTTACAGATGG 59.686 38.462 0.00 0.00 0.00 3.51
385 386 7.276658 AGACGCTCTTACAATTCTTTACAGATG 59.723 37.037 0.00 0.00 0.00 2.90
386 387 7.324178 AGACGCTCTTACAATTCTTTACAGAT 58.676 34.615 0.00 0.00 0.00 2.90
387 388 6.688578 AGACGCTCTTACAATTCTTTACAGA 58.311 36.000 0.00 0.00 0.00 3.41
388 389 6.952935 AGACGCTCTTACAATTCTTTACAG 57.047 37.500 0.00 0.00 0.00 2.74
389 390 7.600065 ACTAGACGCTCTTACAATTCTTTACA 58.400 34.615 0.00 0.00 0.00 2.41
390 391 9.008289 GTACTAGACGCTCTTACAATTCTTTAC 57.992 37.037 0.00 0.00 0.00 2.01
391 392 8.733458 TGTACTAGACGCTCTTACAATTCTTTA 58.267 33.333 0.00 0.00 0.00 1.85
392 393 7.600065 TGTACTAGACGCTCTTACAATTCTTT 58.400 34.615 0.00 0.00 0.00 2.52
393 394 7.154435 TGTACTAGACGCTCTTACAATTCTT 57.846 36.000 0.00 0.00 0.00 2.52
394 395 6.754702 TGTACTAGACGCTCTTACAATTCT 57.245 37.500 0.00 0.00 0.00 2.40
395 396 7.701078 TGAATGTACTAGACGCTCTTACAATTC 59.299 37.037 0.00 1.09 27.49 2.17
396 397 7.544622 TGAATGTACTAGACGCTCTTACAATT 58.455 34.615 0.00 0.00 27.49 2.32
397 398 7.096884 TGAATGTACTAGACGCTCTTACAAT 57.903 36.000 0.00 0.00 27.49 2.71
398 399 6.505044 TGAATGTACTAGACGCTCTTACAA 57.495 37.500 0.00 0.00 27.49 2.41
399 400 6.694877 ATGAATGTACTAGACGCTCTTACA 57.305 37.500 0.00 0.00 28.02 2.41
400 401 7.988904 AAATGAATGTACTAGACGCTCTTAC 57.011 36.000 0.00 0.00 0.00 2.34
402 403 8.997621 TTAAAATGAATGTACTAGACGCTCTT 57.002 30.769 0.00 0.00 0.00 2.85
403 404 8.997621 TTTAAAATGAATGTACTAGACGCTCT 57.002 30.769 0.00 0.00 0.00 4.09
506 507 3.636764 AGAAGATTTCACGCCTGGTTTTT 59.363 39.130 0.00 0.00 0.00 1.94
507 508 3.004734 CAGAAGATTTCACGCCTGGTTTT 59.995 43.478 0.00 0.00 0.00 2.43
508 509 2.554032 CAGAAGATTTCACGCCTGGTTT 59.446 45.455 0.00 0.00 0.00 3.27
509 510 2.154462 CAGAAGATTTCACGCCTGGTT 58.846 47.619 0.00 0.00 0.00 3.67
510 511 1.611673 CCAGAAGATTTCACGCCTGGT 60.612 52.381 0.00 0.00 37.11 4.00
511 512 1.089920 CCAGAAGATTTCACGCCTGG 58.910 55.000 0.00 0.00 35.75 4.45
512 513 2.099141 TCCAGAAGATTTCACGCCTG 57.901 50.000 0.00 0.00 0.00 4.85
513 514 2.859165 TTCCAGAAGATTTCACGCCT 57.141 45.000 0.00 0.00 0.00 5.52
514 515 3.274288 AGATTCCAGAAGATTTCACGCC 58.726 45.455 0.00 0.00 0.00 5.68
515 516 4.393062 TGAAGATTCCAGAAGATTTCACGC 59.607 41.667 0.00 0.00 0.00 5.34
516 517 5.409520 TGTGAAGATTCCAGAAGATTTCACG 59.590 40.000 18.89 0.00 39.26 4.35
517 518 6.808008 TGTGAAGATTCCAGAAGATTTCAC 57.192 37.500 18.13 18.13 38.22 3.18
518 519 7.822161 TTTGTGAAGATTCCAGAAGATTTCA 57.178 32.000 0.00 1.96 0.00 2.69
519 520 7.596621 GGTTTTGTGAAGATTCCAGAAGATTTC 59.403 37.037 0.00 0.00 0.00 2.17
520 521 7.436933 GGTTTTGTGAAGATTCCAGAAGATTT 58.563 34.615 0.00 0.00 0.00 2.17
521 522 6.294176 CGGTTTTGTGAAGATTCCAGAAGATT 60.294 38.462 0.00 0.00 0.00 2.40
522 523 5.182001 CGGTTTTGTGAAGATTCCAGAAGAT 59.818 40.000 0.00 0.00 0.00 2.40
523 524 4.515191 CGGTTTTGTGAAGATTCCAGAAGA 59.485 41.667 0.00 0.00 0.00 2.87
524 525 4.275936 ACGGTTTTGTGAAGATTCCAGAAG 59.724 41.667 0.00 0.00 0.00 2.85
525 526 4.204012 ACGGTTTTGTGAAGATTCCAGAA 58.796 39.130 0.00 0.00 0.00 3.02
526 527 3.815809 ACGGTTTTGTGAAGATTCCAGA 58.184 40.909 0.00 0.00 0.00 3.86
527 528 4.275936 AGAACGGTTTTGTGAAGATTCCAG 59.724 41.667 0.00 0.00 0.00 3.86
528 529 4.204012 AGAACGGTTTTGTGAAGATTCCA 58.796 39.130 0.00 0.00 0.00 3.53
529 530 4.610680 CGAGAACGGTTTTGTGAAGATTCC 60.611 45.833 0.00 0.00 35.72 3.01
530 531 4.455124 CGAGAACGGTTTTGTGAAGATTC 58.545 43.478 0.00 0.00 35.72 2.52
531 532 3.303791 GCGAGAACGGTTTTGTGAAGATT 60.304 43.478 0.00 0.00 40.15 2.40
532 533 2.223377 GCGAGAACGGTTTTGTGAAGAT 59.777 45.455 0.00 0.00 40.15 2.40
533 534 1.595794 GCGAGAACGGTTTTGTGAAGA 59.404 47.619 0.00 0.00 40.15 2.87
534 535 2.018717 GCGAGAACGGTTTTGTGAAG 57.981 50.000 0.00 0.00 40.15 3.02
548 549 1.377366 CGTGCCCTTCTCTAGCGAGA 61.377 60.000 0.00 0.00 44.32 4.04
549 550 1.064946 CGTGCCCTTCTCTAGCGAG 59.935 63.158 0.00 0.00 38.67 5.03
550 551 3.064987 GCGTGCCCTTCTCTAGCGA 62.065 63.158 0.00 0.00 0.00 4.93
551 552 2.583593 GCGTGCCCTTCTCTAGCG 60.584 66.667 0.00 0.00 0.00 4.26
552 553 2.583593 CGCGTGCCCTTCTCTAGC 60.584 66.667 0.00 0.00 0.00 3.42
553 554 2.105128 CCGCGTGCCCTTCTCTAG 59.895 66.667 4.92 0.00 0.00 2.43
554 555 3.458163 CCCGCGTGCCCTTCTCTA 61.458 66.667 4.92 0.00 0.00 2.43
563 564 1.366111 TAATTCTTCTGCCCGCGTGC 61.366 55.000 6.62 6.62 0.00 5.34
564 565 1.261619 GATAATTCTTCTGCCCGCGTG 59.738 52.381 4.92 0.00 0.00 5.34
565 566 1.583054 GATAATTCTTCTGCCCGCGT 58.417 50.000 4.92 0.00 0.00 6.01
566 567 0.868406 GGATAATTCTTCTGCCCGCG 59.132 55.000 0.00 0.00 0.00 6.46
567 568 1.967319 TGGATAATTCTTCTGCCCGC 58.033 50.000 0.00 0.00 0.00 6.13
568 569 2.291741 GCTTGGATAATTCTTCTGCCCG 59.708 50.000 0.00 0.00 0.00 6.13
569 570 2.625314 GGCTTGGATAATTCTTCTGCCC 59.375 50.000 0.00 0.00 32.50 5.36
570 571 2.625314 GGGCTTGGATAATTCTTCTGCC 59.375 50.000 0.00 0.00 37.34 4.85
571 572 3.290710 TGGGCTTGGATAATTCTTCTGC 58.709 45.455 0.00 0.00 0.00 4.26
572 573 3.317430 GCTGGGCTTGGATAATTCTTCTG 59.683 47.826 0.00 0.00 0.00 3.02
573 574 3.560105 GCTGGGCTTGGATAATTCTTCT 58.440 45.455 0.00 0.00 0.00 2.85
574 575 2.291741 CGCTGGGCTTGGATAATTCTTC 59.708 50.000 0.00 0.00 0.00 2.87
575 576 2.092429 TCGCTGGGCTTGGATAATTCTT 60.092 45.455 0.00 0.00 0.00 2.52
576 577 1.490490 TCGCTGGGCTTGGATAATTCT 59.510 47.619 0.00 0.00 0.00 2.40
577 578 1.604278 GTCGCTGGGCTTGGATAATTC 59.396 52.381 0.00 0.00 0.00 2.17
578 579 1.212935 AGTCGCTGGGCTTGGATAATT 59.787 47.619 0.00 0.00 0.00 1.40
579 580 0.839946 AGTCGCTGGGCTTGGATAAT 59.160 50.000 0.00 0.00 0.00 1.28
580 581 0.107703 CAGTCGCTGGGCTTGGATAA 60.108 55.000 0.00 0.00 0.00 1.75
581 582 1.522092 CAGTCGCTGGGCTTGGATA 59.478 57.895 0.00 0.00 0.00 2.59
582 583 2.270205 CAGTCGCTGGGCTTGGAT 59.730 61.111 0.00 0.00 0.00 3.41
583 584 4.704833 GCAGTCGCTGGGCTTGGA 62.705 66.667 8.57 0.00 34.30 3.53
630 632 2.667536 CGAGGCAGCAGCTGTTGT 60.668 61.111 28.21 12.49 41.70 3.32
689 692 3.278072 TACTCTGCCGGTCCCGTCT 62.278 63.158 1.90 0.00 37.81 4.18
691 694 2.569218 ATCTACTCTGCCGGTCCCGT 62.569 60.000 1.90 0.00 37.81 5.28
698 711 7.708752 AGAAAGAAAGAAATATCTACTCTGCCG 59.291 37.037 0.00 0.00 33.77 5.69
728 741 4.597075 AGCCATTGGGTTGGTCTTATTTTT 59.403 37.500 0.36 0.00 39.11 1.94
729 742 4.167319 AGCCATTGGGTTGGTCTTATTTT 58.833 39.130 0.36 0.00 39.11 1.82
730 743 3.790126 AGCCATTGGGTTGGTCTTATTT 58.210 40.909 0.36 0.00 39.11 1.40
731 744 3.473113 AGCCATTGGGTTGGTCTTATT 57.527 42.857 0.36 0.00 39.11 1.40
732 745 4.601406 TTAGCCATTGGGTTGGTCTTAT 57.399 40.909 13.49 0.00 39.11 1.73
733 746 4.277476 CATTAGCCATTGGGTTGGTCTTA 58.723 43.478 13.49 0.00 39.11 2.10
734 747 2.990740 TTAGCCATTGGGTTGGTCTT 57.009 45.000 13.49 0.00 39.11 3.01
735 748 2.738743 CATTAGCCATTGGGTTGGTCT 58.261 47.619 13.49 0.00 39.11 3.85
736 749 1.136891 GCATTAGCCATTGGGTTGGTC 59.863 52.381 13.49 0.00 39.11 4.02
737 750 1.194218 GCATTAGCCATTGGGTTGGT 58.806 50.000 13.49 0.00 39.11 3.67
738 751 1.488390 AGCATTAGCCATTGGGTTGG 58.512 50.000 13.49 4.40 43.56 3.77
739 752 4.942761 ATAAGCATTAGCCATTGGGTTG 57.057 40.909 13.49 7.45 43.56 3.77
740 753 5.280654 CAATAAGCATTAGCCATTGGGTT 57.719 39.130 13.49 0.00 43.56 4.11
741 754 4.942761 CAATAAGCATTAGCCATTGGGT 57.057 40.909 12.79 12.79 43.56 4.51
744 757 4.325028 TGCCAATAAGCATTAGCCATTG 57.675 40.909 0.00 0.00 43.56 2.82
767 780 8.280497 GTGCTCGTGAAGTTTCTTCTATAAAAA 58.720 33.333 10.21 0.00 0.00 1.94
768 781 7.095355 GGTGCTCGTGAAGTTTCTTCTATAAAA 60.095 37.037 10.21 0.00 0.00 1.52
769 782 6.367969 GGTGCTCGTGAAGTTTCTTCTATAAA 59.632 38.462 10.21 0.00 0.00 1.40
770 783 5.867716 GGTGCTCGTGAAGTTTCTTCTATAA 59.132 40.000 10.21 0.00 0.00 0.98
771 784 5.047590 TGGTGCTCGTGAAGTTTCTTCTATA 60.048 40.000 10.21 0.00 0.00 1.31
772 785 4.246458 GGTGCTCGTGAAGTTTCTTCTAT 58.754 43.478 10.21 0.00 0.00 1.98
773 786 3.069016 TGGTGCTCGTGAAGTTTCTTCTA 59.931 43.478 10.21 0.00 0.00 2.10
774 787 2.158957 TGGTGCTCGTGAAGTTTCTTCT 60.159 45.455 10.21 0.00 0.00 2.85
775 788 2.032808 GTGGTGCTCGTGAAGTTTCTTC 60.033 50.000 2.95 2.95 0.00 2.87
776 789 1.940613 GTGGTGCTCGTGAAGTTTCTT 59.059 47.619 0.00 0.00 0.00 2.52
777 790 1.134521 TGTGGTGCTCGTGAAGTTTCT 60.135 47.619 0.00 0.00 0.00 2.52
778 791 1.295792 TGTGGTGCTCGTGAAGTTTC 58.704 50.000 0.00 0.00 0.00 2.78
779 792 1.603802 CATGTGGTGCTCGTGAAGTTT 59.396 47.619 0.00 0.00 0.00 2.66
780 793 1.229428 CATGTGGTGCTCGTGAAGTT 58.771 50.000 0.00 0.00 0.00 2.66
781 794 0.106708 ACATGTGGTGCTCGTGAAGT 59.893 50.000 0.00 0.00 0.00 3.01
782 795 0.792640 GACATGTGGTGCTCGTGAAG 59.207 55.000 1.15 0.00 0.00 3.02
783 796 0.602638 GGACATGTGGTGCTCGTGAA 60.603 55.000 1.15 0.00 34.56 3.18
784 797 1.005037 GGACATGTGGTGCTCGTGA 60.005 57.895 1.15 0.00 34.56 4.35
785 798 0.884259 TTGGACATGTGGTGCTCGTG 60.884 55.000 1.15 0.00 38.87 4.35
786 799 0.603707 CTTGGACATGTGGTGCTCGT 60.604 55.000 1.15 0.00 38.87 4.18
787 800 1.915614 GCTTGGACATGTGGTGCTCG 61.916 60.000 1.15 0.00 38.87 5.03
788 801 1.589716 GGCTTGGACATGTGGTGCTC 61.590 60.000 1.15 0.00 38.87 4.26
789 802 1.604593 GGCTTGGACATGTGGTGCT 60.605 57.895 1.15 0.00 38.87 4.40
790 803 2.964978 GGCTTGGACATGTGGTGC 59.035 61.111 1.15 1.93 38.51 5.01
791 804 0.888736 TTCGGCTTGGACATGTGGTG 60.889 55.000 1.15 0.00 0.00 4.17
792 805 0.179004 TTTCGGCTTGGACATGTGGT 60.179 50.000 1.15 0.00 0.00 4.16
793 806 0.958091 TTTTCGGCTTGGACATGTGG 59.042 50.000 1.15 0.00 0.00 4.17
794 807 2.988493 CAATTTTCGGCTTGGACATGTG 59.012 45.455 1.15 0.00 0.00 3.21
795 808 2.890311 TCAATTTTCGGCTTGGACATGT 59.110 40.909 0.00 0.00 0.00 3.21
796 809 3.574284 TCAATTTTCGGCTTGGACATG 57.426 42.857 0.00 0.00 0.00 3.21
797 810 3.573967 AGTTCAATTTTCGGCTTGGACAT 59.426 39.130 0.00 0.00 33.99 3.06
798 811 2.955660 AGTTCAATTTTCGGCTTGGACA 59.044 40.909 0.00 0.00 33.99 4.02
799 812 3.643159 AGTTCAATTTTCGGCTTGGAC 57.357 42.857 0.00 0.00 32.07 4.02
800 813 3.634448 TCAAGTTCAATTTTCGGCTTGGA 59.366 39.130 0.00 0.00 35.43 3.53
801 814 3.976169 TCAAGTTCAATTTTCGGCTTGG 58.024 40.909 0.00 0.00 35.43 3.61
802 815 5.691305 TCATTCAAGTTCAATTTTCGGCTTG 59.309 36.000 0.00 0.00 35.86 4.01
803 816 5.841810 TCATTCAAGTTCAATTTTCGGCTT 58.158 33.333 0.00 0.00 0.00 4.35
804 817 5.452078 TCATTCAAGTTCAATTTTCGGCT 57.548 34.783 0.00 0.00 0.00 5.52
805 818 6.710692 ATTCATTCAAGTTCAATTTTCGGC 57.289 33.333 0.00 0.00 0.00 5.54
806 819 8.375465 GCTAATTCATTCAAGTTCAATTTTCGG 58.625 33.333 0.00 0.00 0.00 4.30
807 820 8.914654 TGCTAATTCATTCAAGTTCAATTTTCG 58.085 29.630 0.00 0.00 0.00 3.46
809 822 8.715088 GCTGCTAATTCATTCAAGTTCAATTTT 58.285 29.630 0.00 0.00 0.00 1.82
810 823 7.874016 TGCTGCTAATTCATTCAAGTTCAATTT 59.126 29.630 0.00 0.00 0.00 1.82
811 824 7.380536 TGCTGCTAATTCATTCAAGTTCAATT 58.619 30.769 0.00 0.00 0.00 2.32
812 825 6.927416 TGCTGCTAATTCATTCAAGTTCAAT 58.073 32.000 0.00 0.00 0.00 2.57
813 826 6.330004 TGCTGCTAATTCATTCAAGTTCAA 57.670 33.333 0.00 0.00 0.00 2.69
814 827 5.963176 TGCTGCTAATTCATTCAAGTTCA 57.037 34.783 0.00 0.00 0.00 3.18
815 828 5.574443 GGTTGCTGCTAATTCATTCAAGTTC 59.426 40.000 0.00 0.00 0.00 3.01
816 829 5.244626 AGGTTGCTGCTAATTCATTCAAGTT 59.755 36.000 0.00 0.00 0.00 2.66
817 830 4.768968 AGGTTGCTGCTAATTCATTCAAGT 59.231 37.500 0.00 0.00 0.00 3.16
818 831 5.106038 TGAGGTTGCTGCTAATTCATTCAAG 60.106 40.000 0.00 0.00 0.00 3.02
819 832 4.766373 TGAGGTTGCTGCTAATTCATTCAA 59.234 37.500 0.00 0.00 0.00 2.69
820 833 4.334552 TGAGGTTGCTGCTAATTCATTCA 58.665 39.130 0.00 0.00 0.00 2.57
821 834 4.732938 GCTGAGGTTGCTGCTAATTCATTC 60.733 45.833 0.00 0.00 0.00 2.67
822 835 3.129988 GCTGAGGTTGCTGCTAATTCATT 59.870 43.478 0.00 0.00 0.00 2.57
823 836 2.686915 GCTGAGGTTGCTGCTAATTCAT 59.313 45.455 0.00 0.00 0.00 2.57
824 837 2.086869 GCTGAGGTTGCTGCTAATTCA 58.913 47.619 0.00 0.25 0.00 2.57
825 838 2.363683 AGCTGAGGTTGCTGCTAATTC 58.636 47.619 0.00 0.00 40.62 2.17
826 839 2.503895 AGCTGAGGTTGCTGCTAATT 57.496 45.000 0.00 0.00 40.62 1.40
833 846 3.564345 CTGGGCAGCTGAGGTTGCT 62.564 63.158 20.43 0.00 46.51 3.91
834 847 3.060615 CTGGGCAGCTGAGGTTGC 61.061 66.667 20.43 0.23 46.58 4.17
858 871 4.222847 GAGGATGGGCCGTCGACC 62.223 72.222 19.19 6.76 43.43 4.79
859 872 2.311688 ATTGAGGATGGGCCGTCGAC 62.312 60.000 19.19 15.11 43.43 4.20
860 873 0.757561 TATTGAGGATGGGCCGTCGA 60.758 55.000 19.19 6.00 43.43 4.20
861 874 0.321671 ATATTGAGGATGGGCCGTCG 59.678 55.000 19.19 0.00 43.43 5.12
862 875 2.568623 AATATTGAGGATGGGCCGTC 57.431 50.000 17.76 17.76 43.43 4.79
863 876 2.443255 AGAAATATTGAGGATGGGCCGT 59.557 45.455 0.00 0.00 43.43 5.68
864 877 3.146104 AGAAATATTGAGGATGGGCCG 57.854 47.619 0.00 0.00 43.43 6.13
865 878 5.143369 AGAAAGAAATATTGAGGATGGGCC 58.857 41.667 0.00 0.00 0.00 5.80
866 879 6.322201 TCAAGAAAGAAATATTGAGGATGGGC 59.678 38.462 0.00 0.00 0.00 5.36
867 880 7.886629 TCAAGAAAGAAATATTGAGGATGGG 57.113 36.000 0.00 0.00 0.00 4.00
888 901 3.733684 GCCAAAAAGCGTTGAGAACTCAA 60.734 43.478 12.40 12.40 46.27 3.02
889 902 2.223479 GCCAAAAAGCGTTGAGAACTCA 60.223 45.455 0.00 0.00 37.91 3.41
890 903 2.385315 GCCAAAAAGCGTTGAGAACTC 58.615 47.619 0.00 0.00 0.00 3.01
891 904 2.492019 GCCAAAAAGCGTTGAGAACT 57.508 45.000 0.08 0.00 0.00 3.01
932 945 2.416107 CTGTTGCTGGGAGGAAGGCA 62.416 60.000 0.00 0.00 0.00 4.75
999 1012 0.538584 TCCTCGACATGCTGCTCATT 59.461 50.000 0.00 0.00 31.79 2.57
1001 1014 0.179092 CATCCTCGACATGCTGCTCA 60.179 55.000 0.00 0.00 0.00 4.26
1002 1015 1.497223 GCATCCTCGACATGCTGCTC 61.497 60.000 14.73 0.00 42.95 4.26
1003 1016 1.523258 GCATCCTCGACATGCTGCT 60.523 57.895 14.73 0.00 42.95 4.24
1044 1057 2.606587 GGGCTTGCTGGAGAGGGAA 61.607 63.158 0.00 0.00 0.00 3.97
1227 1254 4.834453 CCAGCCTGCAGAGCGGAG 62.834 72.222 17.39 11.75 37.02 4.63
1507 1538 0.918983 TTTCCAGCGGATCCTCCAAT 59.081 50.000 10.75 0.00 35.91 3.16
1657 1688 9.892130 CCAAACCAAGAAATATAGAGAACTACT 57.108 33.333 0.00 0.00 0.00 2.57
1691 1727 7.391148 TCATTATACCAAAAACTTCTCCTGC 57.609 36.000 0.00 0.00 0.00 4.85
1726 1762 6.019075 GGTTTAGGTTTCAGAATTGTTTGTGC 60.019 38.462 0.00 0.00 0.00 4.57
1892 3185 7.173907 ACATACAGAAACATTCATAGCCATAGC 59.826 37.037 0.00 0.00 40.32 2.97
1972 3265 2.691526 AGCCACATGTGCTATTTCATGG 59.308 45.455 20.81 3.79 43.68 3.66
1987 3280 3.049674 GCGCTAACTGCAGCCACA 61.050 61.111 15.27 0.00 43.06 4.17
2005 3298 1.597663 CCGACAGCGTAATCATTTCCC 59.402 52.381 0.00 0.00 35.23 3.97
2170 3463 0.662619 CCGCGGACATATTTGCATGT 59.337 50.000 24.07 0.00 41.83 3.21
2686 3979 9.220767 AGTGTTGAATCTTTCTTGACTATTACC 57.779 33.333 0.00 0.00 0.00 2.85
2743 4036 2.294512 CTGAGCAACCCTTTTCTCAACC 59.705 50.000 0.00 0.00 35.44 3.77
2796 4089 6.149807 GGACAATTCCATGTTTTGCATCAAAT 59.850 34.615 0.00 0.00 42.30 2.32
2829 4122 9.798994 AGTTTCTCCAGTACGTACATATAAAAG 57.201 33.333 26.55 13.31 0.00 2.27
2887 4180 8.049117 ACCGCATTAAGATGACCATATTCATAT 58.951 33.333 0.00 0.00 36.30 1.78
2923 4216 8.940397 TCCTTTGAGTTCTGGAAATTAGAATT 57.060 30.769 0.00 0.00 36.63 2.17
3042 4336 8.248945 CACAAAAGGCTAGTTACTAGTTAGCTA 58.751 37.037 19.12 10.98 39.70 3.32
3043 4337 7.097834 CACAAAAGGCTAGTTACTAGTTAGCT 58.902 38.462 19.12 10.52 39.70 3.32
3044 4338 6.183360 GCACAAAAGGCTAGTTACTAGTTAGC 60.183 42.308 19.12 14.25 36.53 3.09
3080 4385 7.885009 TGATGCCAGATTTTTAGAATCATGA 57.115 32.000 0.00 0.00 0.00 3.07
3101 4406 4.561326 GCACCAACCTGCAATTAACTTGAT 60.561 41.667 0.00 0.00 36.97 2.57
3155 4460 2.652590 AGGGCATCTTCAATTCTCAGC 58.347 47.619 0.00 0.00 0.00 4.26
3179 4484 2.612212 GGTTAGTGATACCATGGTTGCG 59.388 50.000 25.38 0.00 35.67 4.85
3464 4770 6.520272 TCGGTAGTACTATAGTCCTTCAGAC 58.480 44.000 9.12 0.00 46.71 3.51
3526 4832 8.400184 TCCAGAAATTAGCAAGATGGATATTG 57.600 34.615 0.00 0.00 30.63 1.90
3632 4938 2.175202 TGGATGGGGTAATTGTGCAAC 58.825 47.619 0.00 0.00 37.35 4.17
3712 5019 6.260050 ACTGATTGTCGTATTGTGAGTTGTTT 59.740 34.615 0.00 0.00 0.00 2.83
3757 5064 4.895889 TGGTGGACAAACAAAATCCATGTA 59.104 37.500 0.00 0.00 44.21 2.29
3768 5075 3.916359 TCACTACTTGGTGGACAAACA 57.084 42.857 0.00 0.00 38.91 2.83
3842 5149 2.613977 CCAAGTACCCAGTCTCTGCAAG 60.614 54.545 0.00 0.00 0.00 4.01
3853 5160 2.976185 TCAAGATGACACCAAGTACCCA 59.024 45.455 0.00 0.00 0.00 4.51
4057 5366 2.293399 GCACCTTGACCACTACAAAAGG 59.707 50.000 0.00 0.00 42.57 3.11
4316 5625 1.364171 AGCTACCGCTCGCTATTGG 59.636 57.895 0.00 0.00 45.15 3.16
4328 5637 2.180432 ACCGAACCAAAAGAGCTACC 57.820 50.000 0.00 0.00 0.00 3.18
4345 5654 3.255642 ACCAGACAAATGTGCATGTAACC 59.744 43.478 0.00 0.00 0.00 2.85
4544 5856 8.773033 AGAGACATTGGATTATTTTAGCCATT 57.227 30.769 0.00 0.00 0.00 3.16
4549 5861 9.401058 AGTTGGAGAGACATTGGATTATTTTAG 57.599 33.333 0.00 0.00 0.00 1.85
4561 5873 8.934023 TTAATTGGTTTAGTTGGAGAGACATT 57.066 30.769 0.00 0.00 0.00 2.71
4571 5883 8.958175 TTCAGCGTTATTAATTGGTTTAGTTG 57.042 30.769 0.00 0.00 0.00 3.16
4733 6045 3.583086 GGCCTTATGCGAACCGGC 61.583 66.667 0.00 0.00 42.61 6.13
4770 6082 0.977108 GCAGGCATTGGGGGAATCAA 60.977 55.000 0.00 0.00 0.00 2.57
4848 6165 3.514309 GGACCAGGGTAAGCACGATATAT 59.486 47.826 0.00 0.00 0.00 0.86
4849 6166 2.895404 GGACCAGGGTAAGCACGATATA 59.105 50.000 0.00 0.00 0.00 0.86
4864 6191 1.813513 AACTGAAAGCATCGGACCAG 58.186 50.000 5.46 0.00 37.60 4.00
4912 6239 0.394488 TTGTGGTGGCTCCGAACAAA 60.394 50.000 8.53 0.00 39.52 2.83
4918 6245 1.024271 CCATATTTGTGGTGGCTCCG 58.976 55.000 0.53 0.00 39.52 4.63
4934 6261 3.992943 TTTTCATGTCCTCGGTACCAT 57.007 42.857 13.54 0.00 0.00 3.55
4935 6262 3.605634 CATTTTCATGTCCTCGGTACCA 58.394 45.455 13.54 0.00 0.00 3.25
4936 6263 2.354821 GCATTTTCATGTCCTCGGTACC 59.645 50.000 0.16 0.16 32.28 3.34
4937 6264 2.354821 GGCATTTTCATGTCCTCGGTAC 59.645 50.000 0.00 0.00 32.28 3.34
4938 6265 2.238646 AGGCATTTTCATGTCCTCGGTA 59.761 45.455 0.00 0.00 35.36 4.02
4939 6266 1.004745 AGGCATTTTCATGTCCTCGGT 59.995 47.619 0.00 0.00 35.36 4.69
4940 6267 1.402968 CAGGCATTTTCATGTCCTCGG 59.597 52.381 0.00 0.00 35.36 4.63
4941 6268 1.402968 CCAGGCATTTTCATGTCCTCG 59.597 52.381 0.00 0.00 35.36 4.63
4942 6269 1.753073 CCCAGGCATTTTCATGTCCTC 59.247 52.381 0.00 0.00 35.36 3.71
4943 6270 1.620524 CCCCAGGCATTTTCATGTCCT 60.621 52.381 0.00 0.00 35.36 3.85
4944 6271 0.826062 CCCCAGGCATTTTCATGTCC 59.174 55.000 0.00 0.00 35.36 4.02
4945 6272 1.205417 CACCCCAGGCATTTTCATGTC 59.795 52.381 0.00 0.00 34.94 3.06
4946 6273 1.203162 TCACCCCAGGCATTTTCATGT 60.203 47.619 0.00 0.00 32.28 3.21
4947 6274 1.559368 TCACCCCAGGCATTTTCATG 58.441 50.000 0.00 0.00 0.00 3.07
4948 6275 2.323999 TTCACCCCAGGCATTTTCAT 57.676 45.000 0.00 0.00 0.00 2.57
4949 6276 2.323999 ATTCACCCCAGGCATTTTCA 57.676 45.000 0.00 0.00 0.00 2.69
4950 6277 5.357742 AATTATTCACCCCAGGCATTTTC 57.642 39.130 0.00 0.00 0.00 2.29
4951 6278 5.777526 AAATTATTCACCCCAGGCATTTT 57.222 34.783 0.00 0.00 0.00 1.82
4952 6279 5.014018 ACAAAATTATTCACCCCAGGCATTT 59.986 36.000 0.00 0.00 0.00 2.32
4953 6280 4.535692 ACAAAATTATTCACCCCAGGCATT 59.464 37.500 0.00 0.00 0.00 3.56
4954 6281 4.080975 CACAAAATTATTCACCCCAGGCAT 60.081 41.667 0.00 0.00 0.00 4.40
4983 6310 6.267699 TCGAATACCCACATATCTTGACAGAT 59.732 38.462 0.00 0.00 42.83 2.90
4998 6325 4.481368 AAATGCTACACTCGAATACCCA 57.519 40.909 0.00 0.00 0.00 4.51
5000 6327 6.417191 TCAAAAATGCTACACTCGAATACC 57.583 37.500 0.00 0.00 0.00 2.73
5001 6328 7.739295 TCTTCAAAAATGCTACACTCGAATAC 58.261 34.615 0.00 0.00 0.00 1.89
5002 6329 7.899178 TCTTCAAAAATGCTACACTCGAATA 57.101 32.000 0.00 0.00 0.00 1.75
5003 6330 6.801539 TCTTCAAAAATGCTACACTCGAAT 57.198 33.333 0.00 0.00 0.00 3.34
5004 6331 6.612247 TTCTTCAAAAATGCTACACTCGAA 57.388 33.333 0.00 0.00 0.00 3.71
5005 6332 6.481976 TCTTTCTTCAAAAATGCTACACTCGA 59.518 34.615 0.00 0.00 0.00 4.04
5006 6333 6.658831 TCTTTCTTCAAAAATGCTACACTCG 58.341 36.000 0.00 0.00 0.00 4.18
5007 6334 9.468532 AAATCTTTCTTCAAAAATGCTACACTC 57.531 29.630 0.00 0.00 0.00 3.51
5090 6417 4.641645 TTGCACACCCGGCCTGAG 62.642 66.667 0.00 0.00 0.00 3.35
5091 6418 4.947147 GTTGCACACCCGGCCTGA 62.947 66.667 0.00 0.00 0.00 3.86
5099 6426 0.316689 CGAGGAAAACGTTGCACACC 60.317 55.000 0.00 1.50 0.00 4.16
5157 6491 1.250840 ATTTCCCGGAAAGCAGCCAC 61.251 55.000 17.51 0.00 34.92 5.01
5162 6496 2.078392 GTACGAATTTCCCGGAAAGCA 58.922 47.619 17.51 0.00 34.92 3.91
5166 6500 1.676615 GCCTGTACGAATTTCCCGGAA 60.677 52.381 0.73 0.00 0.00 4.30
5188 6522 0.880278 AACCGCAGCTGTAGTGTGTG 60.880 55.000 16.64 0.00 0.00 3.82
5212 6546 6.074623 CGCATAAACTTGTCTGTATGCTCTAG 60.075 42.308 11.47 0.00 44.26 2.43
5443 6800 2.417719 CTACTTTCAGTTCGCCAGCTT 58.582 47.619 0.00 0.00 0.00 3.74
5643 7016 2.985847 AAGTGCTTCTTGGGCGCC 60.986 61.111 21.18 21.18 40.59 6.53
5787 7160 1.214589 CGACGAGTTCCAACCCGAT 59.785 57.895 0.00 0.00 34.08 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.