Multiple sequence alignment - TraesCS2B01G327800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G327800 chr2B 100.000 4530 0 0 1 4530 470028040 470032569 0.000000e+00 8366
1 TraesCS2B01G327800 chr2B 93.818 550 25 7 3984 4530 90437313 90436770 0.000000e+00 819
2 TraesCS2B01G327800 chr2B 93.273 550 28 7 3984 4530 161216273 161215730 0.000000e+00 802
3 TraesCS2B01G327800 chr2B 96.324 136 5 0 3849 3984 26158703 26158838 1.640000e-54 224
4 TraesCS2B01G327800 chr2B 94.118 136 8 0 3849 3984 629117008 629116873 1.650000e-49 207
5 TraesCS2B01G327800 chr2B 91.724 145 11 1 3840 3984 451530011 451529868 2.760000e-47 200
6 TraesCS2B01G327800 chr2B 91.489 141 12 0 3841 3981 476716179 476716319 1.290000e-45 195
7 TraesCS2B01G327800 chr2D 91.228 1425 81 20 2196 3606 396650577 396651971 0.000000e+00 1899
8 TraesCS2B01G327800 chr2D 91.434 572 31 9 895 1463 396648712 396649268 0.000000e+00 769
9 TraesCS2B01G327800 chr2D 84.651 645 56 17 1490 2129 396649810 396650416 1.800000e-168 603
10 TraesCS2B01G327800 chr2D 87.324 426 52 2 461 884 396646543 396646968 1.890000e-133 486
11 TraesCS2B01G327800 chr2D 82.812 448 43 13 1 441 396525655 396526075 1.990000e-98 370
12 TraesCS2B01G327800 chr2D 91.257 183 11 5 3672 3850 396652123 396652304 1.260000e-60 244
13 TraesCS2B01G327800 chr2A 93.436 975 47 5 1791 2765 534621342 534622299 0.000000e+00 1430
14 TraesCS2B01G327800 chr2A 90.194 826 42 17 901 1717 534619266 534620061 0.000000e+00 1040
15 TraesCS2B01G327800 chr2A 89.036 830 52 20 2793 3606 534622294 534623100 0.000000e+00 992
16 TraesCS2B01G327800 chr2A 83.259 448 42 13 1 441 534618041 534618462 9.200000e-102 381
17 TraesCS2B01G327800 chr2A 89.796 196 12 5 3662 3850 534623243 534623437 1.260000e-60 244
18 TraesCS2B01G327800 chr4A 95.446 549 20 3 3984 4530 705552981 705553526 0.000000e+00 870
19 TraesCS2B01G327800 chr1A 93.601 547 26 7 3984 4527 507992131 507991591 0.000000e+00 808
20 TraesCS2B01G327800 chr1A 94.808 520 19 3 3984 4501 113887963 113887450 0.000000e+00 804
21 TraesCS2B01G327800 chr1A 92.909 550 29 8 3984 4530 485335878 485335336 0.000000e+00 791
22 TraesCS2B01G327800 chr5A 93.091 550 29 7 3984 4530 666323287 666322744 0.000000e+00 797
23 TraesCS2B01G327800 chr5A 91.608 143 12 0 3842 3984 600290844 600290986 9.940000e-47 198
24 TraesCS2B01G327800 chr1B 93.091 550 29 7 3984 4530 30537718 30537175 0.000000e+00 797
25 TraesCS2B01G327800 chr1B 92.754 138 10 0 3847 3984 688782058 688782195 2.760000e-47 200
26 TraesCS2B01G327800 chr1B 91.549 142 12 0 3843 3984 322398029 322397888 3.580000e-46 196
27 TraesCS2B01G327800 chr3A 93.843 536 18 5 3984 4517 11584091 11583569 0.000000e+00 793
28 TraesCS2B01G327800 chr3D 85.714 378 36 15 3953 4325 584748245 584748609 2.560000e-102 383
29 TraesCS2B01G327800 chr3B 94.030 134 8 0 3851 3984 260841985 260841852 2.140000e-48 204
30 TraesCS2B01G327800 chr6B 92.029 138 11 0 3847 3984 568192035 568191898 1.290000e-45 195


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G327800 chr2B 470028040 470032569 4529 False 8366.0 8366 100.0000 1 4530 1 chr2B.!!$F2 4529
1 TraesCS2B01G327800 chr2B 90436770 90437313 543 True 819.0 819 93.8180 3984 4530 1 chr2B.!!$R1 546
2 TraesCS2B01G327800 chr2B 161215730 161216273 543 True 802.0 802 93.2730 3984 4530 1 chr2B.!!$R2 546
3 TraesCS2B01G327800 chr2D 396646543 396652304 5761 False 800.2 1899 89.1788 461 3850 5 chr2D.!!$F2 3389
4 TraesCS2B01G327800 chr2A 534618041 534623437 5396 False 817.4 1430 89.1442 1 3850 5 chr2A.!!$F1 3849
5 TraesCS2B01G327800 chr4A 705552981 705553526 545 False 870.0 870 95.4460 3984 4530 1 chr4A.!!$F1 546
6 TraesCS2B01G327800 chr1A 507991591 507992131 540 True 808.0 808 93.6010 3984 4527 1 chr1A.!!$R3 543
7 TraesCS2B01G327800 chr1A 113887450 113887963 513 True 804.0 804 94.8080 3984 4501 1 chr1A.!!$R1 517
8 TraesCS2B01G327800 chr1A 485335336 485335878 542 True 791.0 791 92.9090 3984 4530 1 chr1A.!!$R2 546
9 TraesCS2B01G327800 chr5A 666322744 666323287 543 True 797.0 797 93.0910 3984 4530 1 chr5A.!!$R1 546
10 TraesCS2B01G327800 chr1B 30537175 30537718 543 True 797.0 797 93.0910 3984 4530 1 chr1B.!!$R1 546
11 TraesCS2B01G327800 chr3A 11583569 11584091 522 True 793.0 793 93.8430 3984 4517 1 chr3A.!!$R1 533

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
201 202 0.039074 CGACCTACGATCCCAGATGC 60.039 60.0 0.00 0.0 45.77 3.91 F
236 237 0.107508 CCGATGCTGGAACTGGTGAT 60.108 55.0 0.00 0.0 0.00 3.06 F
1137 2923 0.108186 CTAATGCGCTCACCCTCACA 60.108 55.0 9.73 0.0 0.00 3.58 F
1744 4070 0.320374 TGTGTACTCAGGCCTTTCGG 59.680 55.0 0.00 0.0 0.00 4.30 F
3175 6875 0.033796 CTCAGGCATGGGTGGTGATT 60.034 55.0 0.00 0.0 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1656 3967 0.251916 TTGCTCCCACAGGGTATTCG 59.748 55.000 1.36 0.00 44.74 3.34 R
1753 4079 0.397941 CTGAGAGGCAGGTGGACAAA 59.602 55.000 0.00 0.00 41.07 2.83 R
3051 6751 1.591703 CTTCTCTGCAGGTACCGCA 59.408 57.895 23.63 23.63 37.88 5.69 R
3307 7007 0.035725 TGCACTTCAGCATCTCCCTG 60.036 55.000 0.00 0.00 40.11 4.45 R
4182 8006 0.601841 GGACGTGGGCGAAAGAAGAA 60.602 55.000 0.00 0.00 42.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.612950 TGCAACCAACTATGTTGGCTG 59.387 47.619 24.26 22.85 43.23 4.85
39 40 2.512515 CTGCTACAAGCTCGGGGC 60.513 66.667 0.00 0.00 42.97 5.80
97 98 3.378339 CAACGGTCCTATATGTCGGAAC 58.622 50.000 0.00 0.00 33.60 3.62
98 99 1.959282 ACGGTCCTATATGTCGGAACC 59.041 52.381 0.00 0.00 33.35 3.62
144 145 2.286294 CGATGTTGGATGCTACAAGCTC 59.714 50.000 5.52 0.00 42.97 4.09
146 147 1.275010 TGTTGGATGCTACAAGCTCGA 59.725 47.619 0.00 0.00 42.97 4.04
156 157 0.827925 ACAAGCTCGAGGTGGAGACA 60.828 55.000 25.39 0.00 36.08 3.41
182 183 1.473434 GGTGCAGTGATAGGGTGCTAC 60.473 57.143 0.00 0.00 38.09 3.58
187 188 1.063867 AGTGATAGGGTGCTACGACCT 60.064 52.381 0.00 0.00 36.14 3.85
189 190 2.292845 GTGATAGGGTGCTACGACCTAC 59.707 54.545 0.00 0.00 39.50 3.18
197 198 0.592148 GCTACGACCTACGATCCCAG 59.408 60.000 0.00 0.00 45.77 4.45
198 199 1.813092 GCTACGACCTACGATCCCAGA 60.813 57.143 0.00 0.00 45.77 3.86
199 200 2.780714 CTACGACCTACGATCCCAGAT 58.219 52.381 0.00 0.00 45.77 2.90
200 201 1.319541 ACGACCTACGATCCCAGATG 58.680 55.000 0.00 0.00 45.77 2.90
201 202 0.039074 CGACCTACGATCCCAGATGC 60.039 60.000 0.00 0.00 45.77 3.91
202 203 1.333177 GACCTACGATCCCAGATGCT 58.667 55.000 0.00 0.00 0.00 3.79
203 204 2.515854 GACCTACGATCCCAGATGCTA 58.484 52.381 0.00 0.00 0.00 3.49
204 205 2.490115 GACCTACGATCCCAGATGCTAG 59.510 54.545 0.00 0.00 0.00 3.42
205 206 2.108425 ACCTACGATCCCAGATGCTAGA 59.892 50.000 0.00 0.00 0.00 2.43
206 207 3.157881 CCTACGATCCCAGATGCTAGAA 58.842 50.000 0.00 0.00 0.00 2.10
207 208 3.057174 CCTACGATCCCAGATGCTAGAAC 60.057 52.174 0.00 0.00 0.00 3.01
208 209 2.672098 ACGATCCCAGATGCTAGAACT 58.328 47.619 0.00 0.00 0.00 3.01
209 210 3.833732 ACGATCCCAGATGCTAGAACTA 58.166 45.455 0.00 0.00 0.00 2.24
210 211 3.823873 ACGATCCCAGATGCTAGAACTAG 59.176 47.826 0.00 4.67 36.29 2.57
211 212 3.823873 CGATCCCAGATGCTAGAACTAGT 59.176 47.826 10.03 0.00 35.65 2.57
212 213 4.320861 CGATCCCAGATGCTAGAACTAGTG 60.321 50.000 0.00 1.72 35.65 2.74
213 214 4.251103 TCCCAGATGCTAGAACTAGTGA 57.749 45.455 0.00 0.00 35.65 3.41
214 215 3.954904 TCCCAGATGCTAGAACTAGTGAC 59.045 47.826 0.00 0.00 35.65 3.67
215 216 3.068873 CCCAGATGCTAGAACTAGTGACC 59.931 52.174 0.00 0.00 35.65 4.02
216 217 3.068873 CCAGATGCTAGAACTAGTGACCC 59.931 52.174 0.00 0.00 35.65 4.46
217 218 3.068873 CAGATGCTAGAACTAGTGACCCC 59.931 52.174 0.00 0.00 35.65 4.95
218 219 1.861982 TGCTAGAACTAGTGACCCCC 58.138 55.000 0.00 0.00 35.65 5.40
230 231 2.610859 ACCCCCGATGCTGGAACT 60.611 61.111 0.00 0.00 0.00 3.01
236 237 0.107508 CCGATGCTGGAACTGGTGAT 60.108 55.000 0.00 0.00 0.00 3.06
255 256 1.965935 TGTTTGCTGCTACAAGCTCA 58.034 45.000 0.00 0.00 42.97 4.26
258 259 0.321919 TTGCTGCTACAAGCTCAGGG 60.322 55.000 0.00 0.00 42.97 4.45
259 260 1.298014 GCTGCTACAAGCTCAGGGT 59.702 57.895 0.03 0.00 42.97 4.34
260 261 1.023513 GCTGCTACAAGCTCAGGGTG 61.024 60.000 0.03 0.00 42.97 4.61
266 267 1.920325 CAAGCTCAGGGTGGAGGGA 60.920 63.158 0.00 0.00 35.41 4.20
267 268 1.920835 AAGCTCAGGGTGGAGGGAC 60.921 63.158 0.00 0.00 35.41 4.46
269 270 2.037367 CTCAGGGTGGAGGGACGA 59.963 66.667 0.00 0.00 0.00 4.20
270 271 1.381872 CTCAGGGTGGAGGGACGAT 60.382 63.158 0.00 0.00 0.00 3.73
310 317 4.301027 GGCCGGCGACCCTAGATG 62.301 72.222 22.54 0.00 0.00 2.90
333 340 1.202428 GGAACTAGTGACCCTCGATGC 60.202 57.143 0.00 0.00 0.00 3.91
349 356 3.111853 GATGCTGGAACCATCGATGTA 57.888 47.619 23.27 4.37 30.88 2.29
352 359 1.871080 CTGGAACCATCGATGTAGGC 58.129 55.000 23.27 9.89 0.00 3.93
369 376 2.512515 CTGCTACAAGCTCGGGGC 60.513 66.667 0.00 0.00 42.97 5.80
378 385 4.292178 GCTCGGGGCGGAGAGATG 62.292 72.222 8.21 0.00 36.65 2.90
390 397 2.436646 GAGATGGCCGGTGTGGTG 60.437 66.667 1.90 0.00 41.21 4.17
395 402 2.047560 GGCCGGTGTGGTGACTAC 60.048 66.667 1.90 0.00 41.21 2.73
397 404 3.045142 CCGGTGTGGTGACTACGT 58.955 61.111 0.00 0.00 0.00 3.57
408 415 1.068748 GTGACTACGTCGACATGGTGT 60.069 52.381 17.16 7.32 34.95 4.16
411 418 0.713883 CTACGTCGACATGGTGTTGC 59.286 55.000 17.16 0.00 31.81 4.17
416 423 2.983030 GACATGGTGTTGCGGCCA 60.983 61.111 2.24 0.00 39.33 5.36
425 432 4.424711 TTGCGGCCAGTGATCCCC 62.425 66.667 2.24 0.00 0.00 4.81
442 480 1.949525 CCCCGATGCTGGAACTAATTG 59.050 52.381 0.00 0.00 0.00 2.32
446 484 4.067896 CCGATGCTGGAACTAATTGCTAT 58.932 43.478 0.00 0.00 0.00 2.97
455 493 4.691216 GGAACTAATTGCTATAAGCTCGGG 59.309 45.833 0.03 0.00 42.97 5.14
477 515 1.419374 AGAGTGTCGTTCGATGTTGC 58.581 50.000 0.00 0.00 0.00 4.17
496 534 1.266989 GCAACTGACAAACCCTAGTGC 59.733 52.381 0.00 0.00 0.00 4.40
521 559 3.142838 GGCAATGGTGGCTGCGAT 61.143 61.111 0.00 0.00 46.62 4.58
522 560 2.103538 GCAATGGTGGCTGCGATG 59.896 61.111 0.00 0.00 0.00 3.84
559 597 2.879907 GCCGGTGCTACGACTACA 59.120 61.111 1.90 0.00 35.47 2.74
562 600 0.795735 CCGGTGCTACGACTACAACG 60.796 60.000 0.00 0.00 43.89 4.10
607 646 3.333414 CGTAGCATGGCAATCGGG 58.667 61.111 0.00 0.00 0.00 5.14
611 650 4.557605 GCATGGCAATCGGGTGCG 62.558 66.667 0.00 0.00 45.91 5.34
621 660 4.308458 CGGGTGCGAGGGTGACAA 62.308 66.667 0.00 0.00 0.00 3.18
626 665 2.028484 GCGAGGGTGACAACGACA 59.972 61.111 0.00 0.00 33.50 4.35
654 693 2.750237 GGCAAAGCGGGGTACAGG 60.750 66.667 0.00 0.00 0.00 4.00
676 715 1.882780 GCATGAGCCTGCTATGCTGAT 60.883 52.381 18.18 0.00 42.84 2.90
678 717 0.534427 TGAGCCTGCTATGCTGATGC 60.534 55.000 0.00 0.00 39.69 3.91
690 729 3.506059 CTGATGCCTCGCCTACCGG 62.506 68.421 0.00 0.00 37.59 5.28
743 783 1.335182 GTCGGAGATGAGATGAAGCGA 59.665 52.381 0.00 0.00 40.67 4.93
772 819 3.802948 ATCCAATGGTCGTACTCACTC 57.197 47.619 0.00 0.00 0.00 3.51
804 851 0.179081 GTTAGGCAGGTGACCGATCC 60.179 60.000 0.00 0.00 0.00 3.36
805 852 1.672854 TTAGGCAGGTGACCGATCCG 61.673 60.000 0.00 0.00 0.00 4.18
818 865 1.583986 GATCCGGAGCTCAGATCGG 59.416 63.158 22.79 21.26 43.42 4.18
897 2419 1.183549 TCCTAACCGGAGCTTCAGTC 58.816 55.000 9.46 0.00 36.69 3.51
898 2420 0.179134 CCTAACCGGAGCTTCAGTCG 60.179 60.000 9.46 0.00 33.16 4.18
927 2706 4.796231 GCCGCGATGACGACCACT 62.796 66.667 8.23 0.00 42.66 4.00
1104 2884 2.829003 CGAGCTGGACCTCGCCTA 60.829 66.667 0.00 0.00 46.69 3.93
1120 2906 4.488136 TACCCCGCCGCTCGTCTA 62.488 66.667 0.00 0.00 36.19 2.59
1137 2923 0.108186 CTAATGCGCTCACCCTCACA 60.108 55.000 9.73 0.00 0.00 3.58
1218 3004 1.956170 CAGCAGCGTCCTGTCGTTT 60.956 57.895 0.00 0.00 41.26 3.60
1265 3051 1.092345 GTAACTAGCTGCTGCCTGCC 61.092 60.000 13.43 0.00 42.00 4.85
1285 3071 6.173191 TGCCGCAGTTAGTTTTCTTTATAC 57.827 37.500 0.00 0.00 0.00 1.47
1286 3072 5.935789 TGCCGCAGTTAGTTTTCTTTATACT 59.064 36.000 0.00 0.00 0.00 2.12
1287 3073 6.091713 TGCCGCAGTTAGTTTTCTTTATACTC 59.908 38.462 0.00 0.00 0.00 2.59
1288 3074 6.456584 GCCGCAGTTAGTTTTCTTTATACTCC 60.457 42.308 0.00 0.00 0.00 3.85
1289 3075 6.817140 CCGCAGTTAGTTTTCTTTATACTCCT 59.183 38.462 0.00 0.00 0.00 3.69
1291 3077 8.718734 CGCAGTTAGTTTTCTTTATACTCCTTT 58.281 33.333 0.00 0.00 0.00 3.11
1319 3105 9.941664 CATATAAATCAAACTAACTGCTTCAGG 57.058 33.333 0.00 0.00 35.51 3.86
1324 3110 5.437060 TCAAACTAACTGCTTCAGGTTCTT 58.563 37.500 0.00 0.00 35.51 2.52
1358 3146 5.091261 TGGGTGTTTGCTAAAAATGTGTT 57.909 34.783 0.00 0.00 0.00 3.32
1359 3147 5.491982 TGGGTGTTTGCTAAAAATGTGTTT 58.508 33.333 0.00 0.00 0.00 2.83
1483 3271 6.046593 TGGTACTGTATTCGCAAAATCCTAG 58.953 40.000 0.00 0.00 0.00 3.02
1494 3282 5.041287 CGCAAAATCCTAGATCGACACTAA 58.959 41.667 0.00 0.00 0.00 2.24
1496 3284 6.861572 CGCAAAATCCTAGATCGACACTAATA 59.138 38.462 0.00 0.00 0.00 0.98
1497 3285 7.381408 CGCAAAATCCTAGATCGACACTAATAA 59.619 37.037 0.00 0.00 0.00 1.40
1498 3286 8.704234 GCAAAATCCTAGATCGACACTAATAAG 58.296 37.037 0.00 0.00 0.00 1.73
1529 3836 2.351738 GGGAAGAAAAATGACCAGCACG 60.352 50.000 0.00 0.00 0.00 5.34
1656 3967 5.861787 GCAACAGGTGAAATTGTTACCATAC 59.138 40.000 0.00 0.00 35.86 2.39
1717 4043 9.691362 CTAATACTGTAATTGGTGCAAAAGTTT 57.309 29.630 0.00 0.00 0.00 2.66
1718 4044 8.587952 AATACTGTAATTGGTGCAAAAGTTTC 57.412 30.769 0.00 0.00 0.00 2.78
1719 4045 6.220726 ACTGTAATTGGTGCAAAAGTTTCT 57.779 33.333 0.00 0.00 0.00 2.52
1720 4046 6.273071 ACTGTAATTGGTGCAAAAGTTTCTC 58.727 36.000 0.00 0.00 0.00 2.87
1721 4047 6.096846 ACTGTAATTGGTGCAAAAGTTTCTCT 59.903 34.615 0.00 0.00 0.00 3.10
1722 4048 6.872920 TGTAATTGGTGCAAAAGTTTCTCTT 58.127 32.000 0.00 0.00 38.10 2.85
1723 4049 6.756074 TGTAATTGGTGCAAAAGTTTCTCTTG 59.244 34.615 0.00 0.00 36.40 3.02
1724 4050 5.596836 ATTGGTGCAAAAGTTTCTCTTGA 57.403 34.783 0.00 0.00 36.40 3.02
1725 4051 5.596836 TTGGTGCAAAAGTTTCTCTTGAT 57.403 34.783 0.00 0.00 36.40 2.57
1726 4052 4.935702 TGGTGCAAAAGTTTCTCTTGATG 58.064 39.130 0.00 0.00 36.40 3.07
1727 4053 4.402155 TGGTGCAAAAGTTTCTCTTGATGT 59.598 37.500 0.00 0.00 36.40 3.06
1728 4054 4.741676 GGTGCAAAAGTTTCTCTTGATGTG 59.258 41.667 0.00 0.00 36.40 3.21
1729 4055 5.343249 GTGCAAAAGTTTCTCTTGATGTGT 58.657 37.500 0.00 0.00 36.40 3.72
1730 4056 6.459573 GGTGCAAAAGTTTCTCTTGATGTGTA 60.460 38.462 0.00 0.00 36.40 2.90
1731 4057 6.414987 GTGCAAAAGTTTCTCTTGATGTGTAC 59.585 38.462 0.00 0.00 36.40 2.90
1732 4058 6.318648 TGCAAAAGTTTCTCTTGATGTGTACT 59.681 34.615 0.00 0.00 36.40 2.73
1733 4059 6.853362 GCAAAAGTTTCTCTTGATGTGTACTC 59.147 38.462 0.00 0.00 36.40 2.59
1734 4060 7.467267 GCAAAAGTTTCTCTTGATGTGTACTCA 60.467 37.037 0.00 0.00 36.40 3.41
1735 4061 7.721286 AAAGTTTCTCTTGATGTGTACTCAG 57.279 36.000 3.75 0.00 36.40 3.35
1736 4062 5.788450 AGTTTCTCTTGATGTGTACTCAGG 58.212 41.667 3.75 0.00 0.00 3.86
1737 4063 3.876274 TCTCTTGATGTGTACTCAGGC 57.124 47.619 3.75 0.00 0.00 4.85
1738 4064 2.497675 TCTCTTGATGTGTACTCAGGCC 59.502 50.000 0.00 0.00 0.00 5.19
1739 4065 2.499289 CTCTTGATGTGTACTCAGGCCT 59.501 50.000 0.00 0.00 0.00 5.19
1740 4066 2.906389 TCTTGATGTGTACTCAGGCCTT 59.094 45.455 0.00 0.00 0.00 4.35
1741 4067 3.327757 TCTTGATGTGTACTCAGGCCTTT 59.672 43.478 0.00 0.00 0.00 3.11
1742 4068 3.334583 TGATGTGTACTCAGGCCTTTC 57.665 47.619 0.00 0.00 0.00 2.62
1743 4069 2.271800 GATGTGTACTCAGGCCTTTCG 58.728 52.381 0.00 0.00 0.00 3.46
1744 4070 0.320374 TGTGTACTCAGGCCTTTCGG 59.680 55.000 0.00 0.00 0.00 4.30
1843 5415 3.232213 TCAAGTTTAGCTAGACTGCCG 57.768 47.619 17.01 9.42 0.00 5.69
1854 5426 1.002624 GACTGCCGTGGGGATCAAA 60.003 57.895 0.00 0.00 34.06 2.69
1870 5442 4.260948 GGATCAAATGTTGCAGCTAGTAGC 60.261 45.833 14.62 14.62 42.84 3.58
2136 5708 5.104374 TCATTCGTTCCTACAACCGTATTC 58.896 41.667 0.00 0.00 0.00 1.75
2231 5897 9.143631 GCAATATATGTCAAGGATTAAATTGCC 57.856 33.333 0.00 0.00 39.50 4.52
2245 5912 4.607293 AAATTGCCTTTCCTTTGGACTC 57.393 40.909 0.00 0.00 0.00 3.36
2336 6003 2.236146 GGTTTATCCTTGCCCAAAAGGG 59.764 50.000 3.27 0.00 45.85 3.95
2511 6178 2.449464 TGGCACCATTTCTTCTCATGG 58.551 47.619 0.00 0.00 45.01 3.66
2512 6179 2.041485 TGGCACCATTTCTTCTCATGGA 59.959 45.455 5.18 0.00 42.49 3.41
2672 6339 2.093658 GTGACAGTGGGTAGTACCATGG 60.094 54.545 20.97 11.19 43.59 3.66
2681 6348 3.630311 GGGTAGTACCATGGAAGGACTCT 60.630 52.174 21.47 7.83 41.02 3.24
2722 6389 6.520272 TGTTGGCATACAAAACAATAGCTTT 58.480 32.000 0.00 0.00 41.58 3.51
2765 6465 7.174426 GTGGCTAACTTCCTGTTTGTATAGTTT 59.826 37.037 0.00 0.00 39.89 2.66
2766 6466 8.377034 TGGCTAACTTCCTGTTTGTATAGTTTA 58.623 33.333 0.00 0.00 39.89 2.01
2767 6467 8.880750 GGCTAACTTCCTGTTTGTATAGTTTAG 58.119 37.037 0.00 0.00 39.89 1.85
2768 6468 9.433153 GCTAACTTCCTGTTTGTATAGTTTAGT 57.567 33.333 0.00 0.00 39.89 2.24
2786 6486 7.598189 GTTTAGTAAAACTAGCTGCTAAGCT 57.402 36.000 11.02 5.45 46.93 3.74
2952 6652 4.371624 TCACTTGTCCATTCCAGTCATT 57.628 40.909 0.00 0.00 0.00 2.57
2962 6662 7.071071 TGTCCATTCCAGTCATTCTATGATACA 59.929 37.037 0.00 0.00 42.04 2.29
3051 6751 0.963962 CAATGTGGAGCAAAGCTGGT 59.036 50.000 0.00 0.00 39.88 4.00
3124 6824 0.827368 AACCCTTCTCTCCTCGATGC 59.173 55.000 0.00 0.00 0.00 3.91
3131 6831 3.238108 TCTCTCCTCGATGCACTTTTC 57.762 47.619 0.00 0.00 0.00 2.29
3132 6832 2.828520 TCTCTCCTCGATGCACTTTTCT 59.171 45.455 0.00 0.00 0.00 2.52
3133 6833 2.928757 CTCTCCTCGATGCACTTTTCTG 59.071 50.000 0.00 0.00 0.00 3.02
3134 6834 2.300152 TCTCCTCGATGCACTTTTCTGT 59.700 45.455 0.00 0.00 0.00 3.41
3145 6845 3.330267 CACTTTTCTGTAGGAGTCAGCC 58.670 50.000 0.00 0.00 33.48 4.85
3158 6858 5.679601 AGGAGTCAGCCATATTTTCTTCTC 58.320 41.667 0.00 0.00 0.00 2.87
3160 6860 5.526846 GGAGTCAGCCATATTTTCTTCTCAG 59.473 44.000 0.00 0.00 0.00 3.35
3161 6861 5.435291 AGTCAGCCATATTTTCTTCTCAGG 58.565 41.667 0.00 0.00 0.00 3.86
3162 6862 4.036144 GTCAGCCATATTTTCTTCTCAGGC 59.964 45.833 0.00 0.00 41.08 4.85
3164 6864 4.583489 CAGCCATATTTTCTTCTCAGGCAT 59.417 41.667 0.00 0.00 43.13 4.40
3166 6866 4.261909 GCCATATTTTCTTCTCAGGCATGG 60.262 45.833 0.00 0.00 40.50 3.66
3168 6868 2.978156 TTTTCTTCTCAGGCATGGGT 57.022 45.000 0.00 0.00 0.00 4.51
3170 6870 0.329261 TTCTTCTCAGGCATGGGTGG 59.671 55.000 0.00 0.00 0.00 4.61
3171 6871 0.842030 TCTTCTCAGGCATGGGTGGT 60.842 55.000 0.00 0.00 0.00 4.16
3172 6872 0.679002 CTTCTCAGGCATGGGTGGTG 60.679 60.000 0.00 0.00 0.00 4.17
3173 6873 1.133181 TTCTCAGGCATGGGTGGTGA 61.133 55.000 0.00 0.00 0.00 4.02
3174 6874 0.915872 TCTCAGGCATGGGTGGTGAT 60.916 55.000 0.00 0.00 0.00 3.06
3175 6875 0.033796 CTCAGGCATGGGTGGTGATT 60.034 55.000 0.00 0.00 0.00 2.57
3176 6876 0.034186 TCAGGCATGGGTGGTGATTC 60.034 55.000 0.00 0.00 0.00 2.52
3179 6879 0.748450 GGCATGGGTGGTGATTCATG 59.252 55.000 0.00 0.00 39.74 3.07
3197 6897 1.999051 GCAGTACGCAAGGATCGTG 59.001 57.895 5.07 0.00 46.39 4.35
3238 6938 0.100861 GAGCTCCCTTACGTTCTCCG 59.899 60.000 0.87 0.00 44.03 4.63
3305 7005 6.478588 CGTAGCAAATTCTAAGCAGGTAAAG 58.521 40.000 0.00 0.00 0.00 1.85
3307 7007 6.502136 AGCAAATTCTAAGCAGGTAAAGTC 57.498 37.500 0.00 0.00 0.00 3.01
3310 7010 6.623767 GCAAATTCTAAGCAGGTAAAGTCAGG 60.624 42.308 0.00 0.00 0.00 3.86
3331 7031 2.089980 GAGATGCTGAAGTGCAATGGT 58.910 47.619 0.00 0.00 46.61 3.55
3332 7032 3.273434 GAGATGCTGAAGTGCAATGGTA 58.727 45.455 0.00 0.00 46.61 3.25
3333 7033 3.881688 GAGATGCTGAAGTGCAATGGTAT 59.118 43.478 0.00 0.00 46.61 2.73
3334 7034 5.039920 AGATGCTGAAGTGCAATGGTATA 57.960 39.130 0.00 0.00 46.61 1.47
3335 7035 5.439721 AGATGCTGAAGTGCAATGGTATAA 58.560 37.500 0.00 0.00 46.61 0.98
3336 7036 4.963276 TGCTGAAGTGCAATGGTATAAC 57.037 40.909 0.00 0.00 40.29 1.89
3337 7037 3.694072 TGCTGAAGTGCAATGGTATAACC 59.306 43.478 0.00 0.00 40.29 2.85
3349 7049 9.944376 TGCAATGGTATAACCTATAAGAGAATC 57.056 33.333 0.00 0.00 39.58 2.52
3366 7066 5.108187 AGAATCTGCAGGCATAGAAAGAA 57.892 39.130 15.13 0.00 0.00 2.52
3373 7073 3.250521 GCAGGCATAGAAAGAAGCTGATC 59.749 47.826 0.00 0.00 0.00 2.92
3379 7079 5.504337 GCATAGAAAGAAGCTGATCTGCAAG 60.504 44.000 24.33 0.28 34.99 4.01
3394 7094 5.420725 TCTGCAAGAAAATACTCCTAGCA 57.579 39.130 0.00 0.00 42.31 3.49
3395 7095 5.178797 TCTGCAAGAAAATACTCCTAGCAC 58.821 41.667 0.00 0.00 42.31 4.40
3396 7096 3.932710 TGCAAGAAAATACTCCTAGCACG 59.067 43.478 0.00 0.00 0.00 5.34
3397 7097 3.242446 GCAAGAAAATACTCCTAGCACGC 60.242 47.826 0.00 0.00 0.00 5.34
3398 7098 3.887621 AGAAAATACTCCTAGCACGCA 57.112 42.857 0.00 0.00 0.00 5.24
3399 7099 3.522553 AGAAAATACTCCTAGCACGCAC 58.477 45.455 0.00 0.00 0.00 5.34
3420 7120 2.657427 CGATGTGATAACGCGCTTGATG 60.657 50.000 5.73 0.00 0.00 3.07
3421 7121 0.373370 TGTGATAACGCGCTTGATGC 59.627 50.000 5.73 0.00 38.57 3.91
3424 7127 1.327460 TGATAACGCGCTTGATGCTTC 59.673 47.619 5.73 0.00 40.11 3.86
3546 7249 4.512484 GGCTAGCTTGTCTCTCAAATCTT 58.488 43.478 15.72 0.00 35.48 2.40
3559 7272 6.153680 TCTCTCAAATCTTTAGACACCTCTCC 59.846 42.308 0.00 0.00 0.00 3.71
3562 7275 4.722361 AATCTTTAGACACCTCTCCGAC 57.278 45.455 0.00 0.00 0.00 4.79
3608 7333 5.011090 AGAGCAAGCGTGTATATTTGAGA 57.989 39.130 0.59 0.00 0.00 3.27
3626 7351 6.932356 TTGAGATTGGCTCTGAAATATCAC 57.068 37.500 0.00 0.00 44.27 3.06
3633 7358 3.879892 GGCTCTGAAATATCACTGGGTTC 59.120 47.826 0.00 0.00 0.00 3.62
3634 7359 4.384647 GGCTCTGAAATATCACTGGGTTCT 60.385 45.833 0.00 0.00 0.00 3.01
3635 7360 5.163301 GGCTCTGAAATATCACTGGGTTCTA 60.163 44.000 0.00 0.00 0.00 2.10
3636 7361 5.988561 GCTCTGAAATATCACTGGGTTCTAG 59.011 44.000 0.00 0.00 0.00 2.43
3637 7362 6.407525 GCTCTGAAATATCACTGGGTTCTAGT 60.408 42.308 0.00 0.00 0.00 2.57
3638 7363 7.201920 GCTCTGAAATATCACTGGGTTCTAGTA 60.202 40.741 0.00 0.00 0.00 1.82
3639 7364 8.008513 TCTGAAATATCACTGGGTTCTAGTAC 57.991 38.462 0.00 0.00 0.00 2.73
3640 7365 7.618117 TCTGAAATATCACTGGGTTCTAGTACA 59.382 37.037 1.69 0.00 0.00 2.90
3641 7366 7.782049 TGAAATATCACTGGGTTCTAGTACAG 58.218 38.462 1.69 3.57 37.01 2.74
3669 7480 9.970553 AGAATTCTCAACATATATGGTATGCAT 57.029 29.630 16.96 3.79 0.00 3.96
3767 7590 3.382803 GAGAGAGGCGGCACTGCAT 62.383 63.158 14.78 0.00 36.28 3.96
3841 7665 7.064253 GGTTGTCTTCTTTACATACGCTACAAT 59.936 37.037 0.00 0.00 0.00 2.71
3853 7677 8.773404 ACATACGCTACAATAAAAGAAAGAGT 57.227 30.769 0.00 0.00 0.00 3.24
3854 7678 9.216117 ACATACGCTACAATAAAAGAAAGAGTT 57.784 29.630 0.00 0.00 0.00 3.01
3884 7708 9.832445 ACCACTATTGATACATAAACTTGTAGG 57.168 33.333 0.00 0.00 35.65 3.18
3885 7709 9.273016 CCACTATTGATACATAAACTTGTAGGG 57.727 37.037 0.00 0.00 35.65 3.53
3886 7710 9.273016 CACTATTGATACATAAACTTGTAGGGG 57.727 37.037 0.00 0.00 35.65 4.79
3887 7711 8.999895 ACTATTGATACATAAACTTGTAGGGGT 58.000 33.333 0.00 0.00 35.65 4.95
3888 7712 9.273016 CTATTGATACATAAACTTGTAGGGGTG 57.727 37.037 0.00 0.00 35.65 4.61
3889 7713 5.996644 TGATACATAAACTTGTAGGGGTGG 58.003 41.667 0.00 0.00 35.65 4.61
3890 7714 5.727279 TGATACATAAACTTGTAGGGGTGGA 59.273 40.000 0.00 0.00 35.65 4.02
3891 7715 6.215841 TGATACATAAACTTGTAGGGGTGGAA 59.784 38.462 0.00 0.00 35.65 3.53
3892 7716 5.327737 ACATAAACTTGTAGGGGTGGAAA 57.672 39.130 0.00 0.00 0.00 3.13
3893 7717 5.074804 ACATAAACTTGTAGGGGTGGAAAC 58.925 41.667 0.00 0.00 0.00 2.78
3894 7718 3.673543 AAACTTGTAGGGGTGGAAACA 57.326 42.857 0.00 0.00 38.70 2.83
3895 7719 2.951229 ACTTGTAGGGGTGGAAACAG 57.049 50.000 0.00 0.00 44.46 3.16
3896 7720 2.132686 ACTTGTAGGGGTGGAAACAGT 58.867 47.619 0.00 0.00 44.46 3.55
3897 7721 2.512476 ACTTGTAGGGGTGGAAACAGTT 59.488 45.455 0.00 0.00 44.46 3.16
3898 7722 3.053170 ACTTGTAGGGGTGGAAACAGTTT 60.053 43.478 0.00 0.00 44.46 2.66
3899 7723 3.217681 TGTAGGGGTGGAAACAGTTTC 57.782 47.619 16.63 16.63 44.46 2.78
3900 7724 2.781174 TGTAGGGGTGGAAACAGTTTCT 59.219 45.455 22.60 7.12 44.46 2.52
3901 7725 3.203487 TGTAGGGGTGGAAACAGTTTCTT 59.797 43.478 22.60 7.24 44.46 2.52
3902 7726 4.412858 TGTAGGGGTGGAAACAGTTTCTTA 59.587 41.667 22.60 11.50 44.46 2.10
3903 7727 3.828921 AGGGGTGGAAACAGTTTCTTAC 58.171 45.455 22.60 20.05 44.46 2.34
3904 7728 3.203487 AGGGGTGGAAACAGTTTCTTACA 59.797 43.478 22.60 11.60 44.46 2.41
3905 7729 3.568430 GGGGTGGAAACAGTTTCTTACAG 59.432 47.826 22.60 0.00 44.46 2.74
3906 7730 4.457466 GGGTGGAAACAGTTTCTTACAGA 58.543 43.478 22.60 1.44 44.46 3.41
3907 7731 4.885325 GGGTGGAAACAGTTTCTTACAGAA 59.115 41.667 22.60 1.46 44.46 3.02
3908 7732 5.358725 GGGTGGAAACAGTTTCTTACAGAAA 59.641 40.000 22.60 0.00 44.46 2.52
3922 7746 9.816787 TTTCTTACAGAAACTATAAAACCCCAT 57.183 29.630 0.00 0.00 39.13 4.00
3928 7752 9.596308 ACAGAAACTATAAAACCCCATAAAACT 57.404 29.630 0.00 0.00 0.00 2.66
3929 7753 9.855021 CAGAAACTATAAAACCCCATAAAACTG 57.145 33.333 0.00 0.00 0.00 3.16
3930 7754 8.528643 AGAAACTATAAAACCCCATAAAACTGC 58.471 33.333 0.00 0.00 0.00 4.40
3931 7755 6.785337 ACTATAAAACCCCATAAAACTGCC 57.215 37.500 0.00 0.00 0.00 4.85
3932 7756 5.659525 ACTATAAAACCCCATAAAACTGCCC 59.340 40.000 0.00 0.00 0.00 5.36
3933 7757 1.651737 AAACCCCATAAAACTGCCCC 58.348 50.000 0.00 0.00 0.00 5.80
3934 7758 0.790339 AACCCCATAAAACTGCCCCT 59.210 50.000 0.00 0.00 0.00 4.79
3935 7759 0.335019 ACCCCATAAAACTGCCCCTC 59.665 55.000 0.00 0.00 0.00 4.30
3936 7760 0.397114 CCCCATAAAACTGCCCCTCC 60.397 60.000 0.00 0.00 0.00 4.30
3937 7761 0.334676 CCCATAAAACTGCCCCTCCA 59.665 55.000 0.00 0.00 0.00 3.86
3938 7762 1.272985 CCCATAAAACTGCCCCTCCAA 60.273 52.381 0.00 0.00 0.00 3.53
3939 7763 1.824852 CCATAAAACTGCCCCTCCAAC 59.175 52.381 0.00 0.00 0.00 3.77
3940 7764 2.557452 CCATAAAACTGCCCCTCCAACT 60.557 50.000 0.00 0.00 0.00 3.16
3941 7765 3.165071 CATAAAACTGCCCCTCCAACTT 58.835 45.455 0.00 0.00 0.00 2.66
3942 7766 1.413118 AAAACTGCCCCTCCAACTTG 58.587 50.000 0.00 0.00 0.00 3.16
3943 7767 0.261696 AAACTGCCCCTCCAACTTGT 59.738 50.000 0.00 0.00 0.00 3.16
3944 7768 0.178990 AACTGCCCCTCCAACTTGTC 60.179 55.000 0.00 0.00 0.00 3.18
3945 7769 1.062488 ACTGCCCCTCCAACTTGTCT 61.062 55.000 0.00 0.00 0.00 3.41
3946 7770 0.607489 CTGCCCCTCCAACTTGTCTG 60.607 60.000 0.00 0.00 0.00 3.51
3947 7771 1.973812 GCCCCTCCAACTTGTCTGC 60.974 63.158 0.00 0.00 0.00 4.26
3948 7772 1.763770 CCCCTCCAACTTGTCTGCT 59.236 57.895 0.00 0.00 0.00 4.24
3949 7773 0.607489 CCCCTCCAACTTGTCTGCTG 60.607 60.000 0.00 0.00 0.00 4.41
3950 7774 0.109342 CCCTCCAACTTGTCTGCTGT 59.891 55.000 0.00 0.00 0.00 4.40
3951 7775 1.347707 CCCTCCAACTTGTCTGCTGTA 59.652 52.381 0.00 0.00 0.00 2.74
3952 7776 2.224523 CCCTCCAACTTGTCTGCTGTAA 60.225 50.000 0.00 0.00 0.00 2.41
3953 7777 2.808543 CCTCCAACTTGTCTGCTGTAAC 59.191 50.000 0.00 0.00 0.00 2.50
3954 7778 3.466836 CTCCAACTTGTCTGCTGTAACA 58.533 45.455 0.00 0.00 0.00 2.41
3955 7779 3.876914 CTCCAACTTGTCTGCTGTAACAA 59.123 43.478 0.00 0.00 34.41 2.83
3956 7780 4.265893 TCCAACTTGTCTGCTGTAACAAA 58.734 39.130 0.69 0.00 35.13 2.83
3957 7781 4.702612 TCCAACTTGTCTGCTGTAACAAAA 59.297 37.500 0.69 0.00 35.13 2.44
3958 7782 5.359576 TCCAACTTGTCTGCTGTAACAAAAT 59.640 36.000 0.69 0.00 35.13 1.82
3959 7783 5.687285 CCAACTTGTCTGCTGTAACAAAATC 59.313 40.000 0.69 0.00 35.13 2.17
3960 7784 6.264832 CAACTTGTCTGCTGTAACAAAATCA 58.735 36.000 0.69 0.00 35.13 2.57
3961 7785 6.639632 ACTTGTCTGCTGTAACAAAATCAT 57.360 33.333 0.69 0.00 35.13 2.45
3962 7786 7.744087 ACTTGTCTGCTGTAACAAAATCATA 57.256 32.000 0.69 0.00 35.13 2.15
3963 7787 7.584987 ACTTGTCTGCTGTAACAAAATCATAC 58.415 34.615 0.69 0.00 35.13 2.39
3964 7788 7.228507 ACTTGTCTGCTGTAACAAAATCATACA 59.771 33.333 0.69 0.00 35.13 2.29
3965 7789 7.503521 TGTCTGCTGTAACAAAATCATACAA 57.496 32.000 0.00 0.00 0.00 2.41
3966 7790 7.935520 TGTCTGCTGTAACAAAATCATACAAA 58.064 30.769 0.00 0.00 0.00 2.83
3967 7791 8.409371 TGTCTGCTGTAACAAAATCATACAAAA 58.591 29.630 0.00 0.00 0.00 2.44
3968 7792 8.690840 GTCTGCTGTAACAAAATCATACAAAAC 58.309 33.333 0.00 0.00 0.00 2.43
3969 7793 7.865385 TCTGCTGTAACAAAATCATACAAAACC 59.135 33.333 0.00 0.00 0.00 3.27
3970 7794 7.492524 TGCTGTAACAAAATCATACAAAACCA 58.507 30.769 0.00 0.00 0.00 3.67
3971 7795 7.436673 TGCTGTAACAAAATCATACAAAACCAC 59.563 33.333 0.00 0.00 0.00 4.16
3972 7796 7.095816 GCTGTAACAAAATCATACAAAACCACC 60.096 37.037 0.00 0.00 0.00 4.61
3973 7797 7.210873 TGTAACAAAATCATACAAAACCACCC 58.789 34.615 0.00 0.00 0.00 4.61
3974 7798 5.222079 ACAAAATCATACAAAACCACCCC 57.778 39.130 0.00 0.00 0.00 4.95
3975 7799 4.241681 CAAAATCATACAAAACCACCCCG 58.758 43.478 0.00 0.00 0.00 5.73
3976 7800 3.443145 AATCATACAAAACCACCCCGA 57.557 42.857 0.00 0.00 0.00 5.14
3977 7801 2.953284 TCATACAAAACCACCCCGAA 57.047 45.000 0.00 0.00 0.00 4.30
3978 7802 2.506444 TCATACAAAACCACCCCGAAC 58.494 47.619 0.00 0.00 0.00 3.95
3979 7803 2.106857 TCATACAAAACCACCCCGAACT 59.893 45.455 0.00 0.00 0.00 3.01
3980 7804 1.970092 TACAAAACCACCCCGAACTG 58.030 50.000 0.00 0.00 0.00 3.16
3981 7805 1.362355 CAAAACCACCCCGAACTGC 59.638 57.895 0.00 0.00 0.00 4.40
3982 7806 1.076632 AAAACCACCCCGAACTGCA 60.077 52.632 0.00 0.00 0.00 4.41
3995 7819 2.017049 GAACTGCACCAACTTGTCTGT 58.983 47.619 0.00 0.00 0.00 3.41
4005 7829 6.153067 CACCAACTTGTCTGTTGTAACAAAA 58.847 36.000 6.63 0.00 44.01 2.44
4021 7845 8.012957 TGTAACAAAATCATACAAAACCACCT 57.987 30.769 0.00 0.00 0.00 4.00
4033 7857 0.108585 AACCACCTCGAACTGCACAT 59.891 50.000 0.00 0.00 0.00 3.21
4069 7893 4.460683 TTTGTCGGGCCCGGATCG 62.461 66.667 42.36 18.55 40.25 3.69
4181 8005 1.348064 CCCCTTCCAAAACCTTTCCC 58.652 55.000 0.00 0.00 0.00 3.97
4182 8006 1.132849 CCCCTTCCAAAACCTTTCCCT 60.133 52.381 0.00 0.00 0.00 4.20
4183 8007 2.689658 CCCTTCCAAAACCTTTCCCTT 58.310 47.619 0.00 0.00 0.00 3.95
4224 8049 1.001631 TTCCTCCTCATCTCGCCCA 59.998 57.895 0.00 0.00 0.00 5.36
4332 8157 1.692519 CCCTCCTGAATACGGTAAGGG 59.307 57.143 6.07 6.07 37.30 3.95
4383 8209 2.771328 CTTCCCCTGTTCCTGCACCC 62.771 65.000 0.00 0.00 0.00 4.61
4425 8251 0.390340 CGATCATGCCGATGTAGGGG 60.390 60.000 1.81 0.00 33.17 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.297033 AGCCAACATAGTTGGTTGCAAG 59.703 45.455 24.90 3.87 43.24 4.01
14 15 2.632377 GAGCTTGTAGCAGCCAACATA 58.368 47.619 1.09 0.00 45.56 2.29
24 25 4.143333 TCGCCCCGAGCTTGTAGC 62.143 66.667 0.00 1.26 42.84 3.58
77 78 2.363359 GGTTCCGACATATAGGACCGTT 59.637 50.000 0.00 0.00 36.06 4.44
81 82 1.959282 ACCGGTTCCGACATATAGGAC 59.041 52.381 13.08 0.00 36.06 3.85
87 88 1.606885 GGGTCACCGGTTCCGACATA 61.607 60.000 21.23 0.00 0.00 2.29
112 113 1.635663 CCAACATCGTCGGTTCTGGC 61.636 60.000 0.00 0.00 0.00 4.85
114 115 1.660607 CATCCAACATCGTCGGTTCTG 59.339 52.381 0.00 0.00 0.00 3.02
144 145 2.567049 GGTCGTGTCTCCACCTCG 59.433 66.667 0.00 0.00 38.41 4.63
146 147 2.989824 CCGGTCGTGTCTCCACCT 60.990 66.667 0.00 0.00 38.41 4.00
156 157 1.511305 CTATCACTGCACCGGTCGT 59.489 57.895 2.59 0.00 0.00 4.34
159 160 1.612442 ACCCTATCACTGCACCGGT 60.612 57.895 0.00 0.00 0.00 5.28
167 168 1.063867 AGGTCGTAGCACCCTATCACT 60.064 52.381 0.00 0.00 37.09 3.41
169 170 2.579873 GTAGGTCGTAGCACCCTATCA 58.420 52.381 0.00 0.00 37.09 2.15
182 183 0.039074 GCATCTGGGATCGTAGGTCG 60.039 60.000 0.00 0.00 41.41 4.79
187 188 3.833732 AGTTCTAGCATCTGGGATCGTA 58.166 45.455 0.00 0.00 0.00 3.43
189 190 3.823873 ACTAGTTCTAGCATCTGGGATCG 59.176 47.826 6.75 0.00 0.00 3.69
197 198 2.365941 GGGGGTCACTAGTTCTAGCATC 59.634 54.545 6.75 0.00 0.00 3.91
198 199 2.399580 GGGGGTCACTAGTTCTAGCAT 58.600 52.381 6.75 0.00 0.00 3.79
199 200 1.861982 GGGGGTCACTAGTTCTAGCA 58.138 55.000 6.75 0.00 0.00 3.49
200 201 0.745468 CGGGGGTCACTAGTTCTAGC 59.255 60.000 6.75 0.00 0.00 3.42
201 202 2.431954 TCGGGGGTCACTAGTTCTAG 57.568 55.000 0.00 5.43 0.00 2.43
202 203 2.662866 CATCGGGGGTCACTAGTTCTA 58.337 52.381 0.00 0.00 0.00 2.10
203 204 1.486211 CATCGGGGGTCACTAGTTCT 58.514 55.000 0.00 0.00 0.00 3.01
204 205 0.179081 GCATCGGGGGTCACTAGTTC 60.179 60.000 0.00 0.00 0.00 3.01
205 206 0.617820 AGCATCGGGGGTCACTAGTT 60.618 55.000 0.00 0.00 0.00 2.24
206 207 1.001760 AGCATCGGGGGTCACTAGT 59.998 57.895 0.00 0.00 0.00 2.57
207 208 1.443407 CAGCATCGGGGGTCACTAG 59.557 63.158 0.00 0.00 0.00 2.57
208 209 2.063979 CCAGCATCGGGGGTCACTA 61.064 63.158 0.00 0.00 0.00 2.74
209 210 3.402681 CCAGCATCGGGGGTCACT 61.403 66.667 0.00 0.00 0.00 3.41
210 211 2.966732 TTCCAGCATCGGGGGTCAC 61.967 63.158 0.00 0.00 0.00 3.67
211 212 2.609299 TTCCAGCATCGGGGGTCA 60.609 61.111 0.00 0.00 0.00 4.02
212 213 2.124695 GTTCCAGCATCGGGGGTC 60.125 66.667 0.00 0.00 0.00 4.46
213 214 2.610859 AGTTCCAGCATCGGGGGT 60.611 61.111 0.00 0.00 0.00 4.95
214 215 2.124570 CAGTTCCAGCATCGGGGG 60.125 66.667 0.00 0.00 0.00 5.40
215 216 2.124570 CCAGTTCCAGCATCGGGG 60.125 66.667 0.00 0.00 0.00 5.73
216 217 1.746615 CACCAGTTCCAGCATCGGG 60.747 63.158 0.00 0.00 0.00 5.14
217 218 0.107508 ATCACCAGTTCCAGCATCGG 60.108 55.000 0.00 0.00 0.00 4.18
218 219 1.012086 CATCACCAGTTCCAGCATCG 58.988 55.000 0.00 0.00 0.00 3.84
230 231 2.268762 TGTAGCAGCAAACATCACCA 57.731 45.000 0.00 0.00 0.00 4.17
236 237 1.875514 CTGAGCTTGTAGCAGCAAACA 59.124 47.619 0.00 0.00 45.56 2.83
255 256 1.995626 CCAATCGTCCCTCCACCCT 60.996 63.158 0.00 0.00 0.00 4.34
258 259 1.745489 GCACCAATCGTCCCTCCAC 60.745 63.158 0.00 0.00 0.00 4.02
259 260 2.668632 GCACCAATCGTCCCTCCA 59.331 61.111 0.00 0.00 0.00 3.86
260 261 2.511600 CGCACCAATCGTCCCTCC 60.512 66.667 0.00 0.00 0.00 4.30
266 267 3.950794 ATGTCGCCGCACCAATCGT 62.951 57.895 0.00 0.00 0.00 3.73
267 268 3.195002 ATGTCGCCGCACCAATCG 61.195 61.111 0.00 0.00 0.00 3.34
269 270 3.133464 CCATGTCGCCGCACCAAT 61.133 61.111 0.00 0.00 0.00 3.16
270 271 4.634703 ACCATGTCGCCGCACCAA 62.635 61.111 0.00 0.00 0.00 3.67
295 302 3.227276 AGCATCTAGGGTCGCCGG 61.227 66.667 0.00 0.00 0.00 6.13
310 317 0.173708 CGAGGGTCACTAGTTCCAGC 59.826 60.000 13.73 2.47 0.00 4.85
333 340 1.414181 AGCCTACATCGATGGTTCCAG 59.586 52.381 28.09 15.72 0.00 3.86
349 356 2.581354 CCGAGCTTGTAGCAGCCT 59.419 61.111 0.00 0.00 45.56 4.58
352 359 2.512515 GCCCCGAGCTTGTAGCAG 60.513 66.667 7.42 0.00 45.56 4.24
369 376 3.461773 ACACCGGCCATCTCTCCG 61.462 66.667 0.00 0.00 44.89 4.63
374 381 2.927856 TCACCACACCGGCCATCT 60.928 61.111 0.00 0.00 39.03 2.90
377 384 2.524640 TAGTCACCACACCGGCCA 60.525 61.111 0.00 0.00 39.03 5.36
378 385 2.047560 GTAGTCACCACACCGGCC 60.048 66.667 0.00 0.00 39.03 6.13
395 402 2.469847 CGCAACACCATGTCGACG 59.530 61.111 11.62 0.00 0.00 5.12
397 404 3.047280 GCCGCAACACCATGTCGA 61.047 61.111 0.00 0.00 0.00 4.20
408 415 4.424711 GGGGATCACTGGCCGCAA 62.425 66.667 0.00 0.00 37.11 4.85
411 418 3.550431 ATCGGGGATCACTGGCCG 61.550 66.667 3.36 0.00 0.00 6.13
416 423 0.982852 TTCCAGCATCGGGGATCACT 60.983 55.000 0.00 0.00 32.15 3.41
425 432 6.619446 GCTTATAGCAATTAGTTCCAGCATCG 60.619 42.308 0.00 0.00 41.89 3.84
442 480 2.229302 CACTCTACCCCGAGCTTATAGC 59.771 54.545 0.00 0.00 42.84 2.97
446 484 1.760192 GACACTCTACCCCGAGCTTA 58.240 55.000 0.00 0.00 34.35 3.09
455 493 2.915463 CAACATCGAACGACACTCTACC 59.085 50.000 0.00 0.00 0.00 3.18
477 515 2.549754 CAGCACTAGGGTTTGTCAGTTG 59.450 50.000 0.00 0.00 0.00 3.16
496 534 2.751436 CACCATTGCCGGTCCCAG 60.751 66.667 1.90 0.00 37.07 4.45
519 557 1.450312 CCTTCACCCCGTGCTCATC 60.450 63.158 0.00 0.00 32.98 2.92
521 559 3.636231 CCCTTCACCCCGTGCTCA 61.636 66.667 0.00 0.00 32.98 4.26
522 560 4.410400 CCCCTTCACCCCGTGCTC 62.410 72.222 0.00 0.00 32.98 4.26
559 597 1.522130 GTCACAACACCCCGTCGTT 60.522 57.895 0.00 0.00 0.00 3.85
562 600 0.320160 GTAGGTCACAACACCCCGTC 60.320 60.000 0.00 0.00 37.09 4.79
574 613 0.540133 TACGCAGGTGGTGTAGGTCA 60.540 55.000 0.00 0.00 41.39 4.02
602 641 3.771160 GTCACCCTCGCACCCGAT 61.771 66.667 0.00 0.00 43.47 4.18
607 646 2.028484 TCGTTGTCACCCTCGCAC 59.972 61.111 0.00 0.00 0.00 5.34
611 650 1.219522 CGGTTGTCGTTGTCACCCTC 61.220 60.000 0.00 0.00 0.00 4.30
620 659 4.675029 CGCCCCTCGGTTGTCGTT 62.675 66.667 0.00 0.00 40.32 3.85
711 751 1.299850 CTCCGACAGTCAACGCACA 60.300 57.895 0.41 0.00 0.00 4.57
743 783 4.519906 ACGACCATTGGATTATTCCCTT 57.480 40.909 10.37 0.00 41.83 3.95
772 819 0.381801 GCCTAACACCATTGGATGCG 59.618 55.000 10.37 0.00 0.00 4.73
804 851 4.637489 CGGCCGATCTGAGCTCCG 62.637 72.222 24.07 4.74 0.00 4.63
805 852 3.219928 TCGGCCGATCTGAGCTCC 61.220 66.667 27.28 0.00 0.00 4.70
849 896 2.740714 GCGATTCACGGACCTGCAC 61.741 63.158 0.00 0.00 42.83 4.57
886 2408 2.817396 GCTGGCGACTGAAGCTCC 60.817 66.667 0.00 0.00 34.05 4.70
1119 2905 0.391130 GTGTGAGGGTGAGCGCATTA 60.391 55.000 11.47 0.00 0.00 1.90
1120 2906 1.672356 GTGTGAGGGTGAGCGCATT 60.672 57.895 11.47 0.00 0.00 3.56
1210 2996 1.657181 GCGGGCACAAAAACGACAG 60.657 57.895 0.00 0.00 0.00 3.51
1218 3004 0.465460 ACTTGAGAAGCGGGCACAAA 60.465 50.000 0.00 0.00 0.00 2.83
1265 3051 7.829378 AGGAGTATAAAGAAAACTAACTGCG 57.171 36.000 0.00 0.00 0.00 5.18
1293 3079 9.941664 CCTGAAGCAGTTAGTTTGATTTATATG 57.058 33.333 0.00 0.00 0.00 1.78
1295 3081 9.515226 AACCTGAAGCAGTTAGTTTGATTTATA 57.485 29.630 0.00 0.00 0.00 0.98
1297 3083 7.719633 AGAACCTGAAGCAGTTAGTTTGATTTA 59.280 33.333 0.00 0.00 0.00 1.40
1298 3084 6.547510 AGAACCTGAAGCAGTTAGTTTGATTT 59.452 34.615 0.00 0.00 0.00 2.17
1299 3085 6.064717 AGAACCTGAAGCAGTTAGTTTGATT 58.935 36.000 0.00 0.00 0.00 2.57
1300 3086 5.625150 AGAACCTGAAGCAGTTAGTTTGAT 58.375 37.500 0.00 0.00 0.00 2.57
1301 3087 5.036117 AGAACCTGAAGCAGTTAGTTTGA 57.964 39.130 0.00 0.00 0.00 2.69
1302 3088 5.278022 GGAAGAACCTGAAGCAGTTAGTTTG 60.278 44.000 0.00 0.00 35.41 2.93
1358 3146 5.350914 CCTGCATTTCAGTTCACAAAAACAA 59.649 36.000 0.00 0.00 41.25 2.83
1359 3147 4.869297 CCTGCATTTCAGTTCACAAAAACA 59.131 37.500 0.00 0.00 41.25 2.83
1483 3271 8.071368 CCTTCTGAGTACTTATTAGTGTCGATC 58.929 40.741 0.00 0.00 35.78 3.69
1494 3282 9.454859 CATTTTTCTTCCCTTCTGAGTACTTAT 57.545 33.333 0.00 0.00 0.00 1.73
1496 3284 7.445707 GTCATTTTTCTTCCCTTCTGAGTACTT 59.554 37.037 0.00 0.00 0.00 2.24
1497 3285 6.937465 GTCATTTTTCTTCCCTTCTGAGTACT 59.063 38.462 0.00 0.00 0.00 2.73
1498 3286 6.149640 GGTCATTTTTCTTCCCTTCTGAGTAC 59.850 42.308 0.00 0.00 0.00 2.73
1500 3288 5.073428 GGTCATTTTTCTTCCCTTCTGAGT 58.927 41.667 0.00 0.00 0.00 3.41
1501 3289 5.072741 TGGTCATTTTTCTTCCCTTCTGAG 58.927 41.667 0.00 0.00 0.00 3.35
1656 3967 0.251916 TTGCTCCCACAGGGTATTCG 59.748 55.000 1.36 0.00 44.74 3.34
1717 4043 2.497675 GGCCTGAGTACACATCAAGAGA 59.502 50.000 0.00 0.00 0.00 3.10
1718 4044 2.499289 AGGCCTGAGTACACATCAAGAG 59.501 50.000 3.11 0.00 0.00 2.85
1719 4045 2.540383 AGGCCTGAGTACACATCAAGA 58.460 47.619 3.11 0.00 0.00 3.02
1720 4046 3.340814 AAGGCCTGAGTACACATCAAG 57.659 47.619 5.69 0.00 0.00 3.02
1721 4047 3.674997 GAAAGGCCTGAGTACACATCAA 58.325 45.455 5.69 0.00 0.00 2.57
1722 4048 2.353704 CGAAAGGCCTGAGTACACATCA 60.354 50.000 5.69 0.00 0.00 3.07
1723 4049 2.271800 CGAAAGGCCTGAGTACACATC 58.728 52.381 5.69 0.00 0.00 3.06
1724 4050 2.386661 CGAAAGGCCTGAGTACACAT 57.613 50.000 5.69 0.00 0.00 3.21
1725 4051 3.906660 CGAAAGGCCTGAGTACACA 57.093 52.632 5.69 0.00 0.00 3.72
1738 4064 3.243367 TGGACAAAAATCAGTGCCGAAAG 60.243 43.478 0.00 0.00 0.00 2.62
1739 4065 2.690497 TGGACAAAAATCAGTGCCGAAA 59.310 40.909 0.00 0.00 0.00 3.46
1740 4066 2.034053 GTGGACAAAAATCAGTGCCGAA 59.966 45.455 0.00 0.00 0.00 4.30
1741 4067 1.606668 GTGGACAAAAATCAGTGCCGA 59.393 47.619 0.00 0.00 0.00 5.54
1742 4068 1.335872 GGTGGACAAAAATCAGTGCCG 60.336 52.381 0.00 0.00 0.00 5.69
1743 4069 1.963515 AGGTGGACAAAAATCAGTGCC 59.036 47.619 0.00 0.00 0.00 5.01
1744 4070 2.863704 GCAGGTGGACAAAAATCAGTGC 60.864 50.000 0.00 0.00 0.00 4.40
1745 4071 2.288395 GGCAGGTGGACAAAAATCAGTG 60.288 50.000 0.00 0.00 0.00 3.66
1746 4072 1.963515 GGCAGGTGGACAAAAATCAGT 59.036 47.619 0.00 0.00 0.00 3.41
1747 4073 2.229784 GAGGCAGGTGGACAAAAATCAG 59.770 50.000 0.00 0.00 0.00 2.90
1748 4074 2.158475 AGAGGCAGGTGGACAAAAATCA 60.158 45.455 0.00 0.00 0.00 2.57
1749 4075 2.489722 GAGAGGCAGGTGGACAAAAATC 59.510 50.000 0.00 0.00 0.00 2.17
1750 4076 2.158475 TGAGAGGCAGGTGGACAAAAAT 60.158 45.455 0.00 0.00 0.00 1.82
1751 4077 1.214175 TGAGAGGCAGGTGGACAAAAA 59.786 47.619 0.00 0.00 0.00 1.94
1752 4078 0.843309 TGAGAGGCAGGTGGACAAAA 59.157 50.000 0.00 0.00 0.00 2.44
1753 4079 0.397941 CTGAGAGGCAGGTGGACAAA 59.602 55.000 0.00 0.00 41.07 2.83
1754 4080 2.061220 CTGAGAGGCAGGTGGACAA 58.939 57.895 0.00 0.00 41.07 3.18
1755 4081 3.797331 CTGAGAGGCAGGTGGACA 58.203 61.111 0.00 0.00 41.07 4.02
1843 5415 1.404583 GCTGCAACATTTGATCCCCAC 60.405 52.381 0.00 0.00 0.00 4.61
1854 5426 2.234661 TCTGTGCTACTAGCTGCAACAT 59.765 45.455 11.14 0.00 42.97 2.71
1870 5442 3.386486 TGGTGTACTAACGCTTTCTGTG 58.614 45.455 0.00 0.00 36.33 3.66
2152 5736 6.486993 AGGAGAACAGTGATTTTCCTAAACAC 59.513 38.462 12.70 0.00 40.50 3.32
2169 5764 4.671831 TGCAATTCCCATAAAGGAGAACA 58.328 39.130 0.00 0.00 41.22 3.18
2231 5897 7.693969 ATCATGTTAAGAGTCCAAAGGAAAG 57.306 36.000 0.00 0.00 31.38 2.62
2336 6003 3.492309 CCACATCTCTATGCCTCAGTGAC 60.492 52.174 0.00 0.00 36.50 3.67
2457 6124 6.427547 CCAAAAATGTTAACCATGAATGCAGT 59.572 34.615 2.48 0.00 32.82 4.40
2551 6218 8.410141 CAACAAGAAGTGGAAACCTGTATAAAA 58.590 33.333 0.00 0.00 0.00 1.52
2681 6348 8.729805 ATGCCAACAAATAAAGAGTTTCAAAA 57.270 26.923 0.00 0.00 0.00 2.44
2722 6389 9.914834 AGTTAGCCACCTTAAACATAATAATGA 57.085 29.630 0.00 0.00 36.54 2.57
2742 6409 9.433153 ACTAAACTATACAAACAGGAAGTTAGC 57.567 33.333 0.00 0.00 40.26 3.09
2777 6477 8.973378 GTATCTGTCTATGTTTTAGCTTAGCAG 58.027 37.037 7.07 0.00 0.00 4.24
2778 6478 8.696374 AGTATCTGTCTATGTTTTAGCTTAGCA 58.304 33.333 7.07 0.00 0.00 3.49
2779 6479 8.973378 CAGTATCTGTCTATGTTTTAGCTTAGC 58.027 37.037 0.00 0.00 0.00 3.09
2787 6487 9.265901 GCACATATCAGTATCTGTCTATGTTTT 57.734 33.333 16.58 3.67 38.25 2.43
2788 6488 7.875041 GGCACATATCAGTATCTGTCTATGTTT 59.125 37.037 16.58 4.10 38.25 2.83
2789 6489 7.382110 GGCACATATCAGTATCTGTCTATGTT 58.618 38.462 16.58 7.44 38.25 2.71
2790 6490 6.071108 GGGCACATATCAGTATCTGTCTATGT 60.071 42.308 14.95 14.95 39.44 2.29
2791 6491 6.154192 AGGGCACATATCAGTATCTGTCTATG 59.846 42.308 0.00 14.17 35.95 2.23
2792 6492 6.154192 CAGGGCACATATCAGTATCTGTCTAT 59.846 42.308 0.00 0.00 32.61 1.98
2793 6493 5.478332 CAGGGCACATATCAGTATCTGTCTA 59.522 44.000 0.00 0.00 32.61 2.59
2794 6494 4.282957 CAGGGCACATATCAGTATCTGTCT 59.717 45.833 0.00 0.00 32.61 3.41
2795 6495 4.281941 TCAGGGCACATATCAGTATCTGTC 59.718 45.833 0.00 0.00 32.61 3.51
2796 6496 4.226384 TCAGGGCACATATCAGTATCTGT 58.774 43.478 0.00 0.00 32.61 3.41
2797 6497 4.879197 TCAGGGCACATATCAGTATCTG 57.121 45.455 0.00 0.00 0.00 2.90
2952 6652 8.054152 TGCAAAAAGCTTGATTGTATCATAGA 57.946 30.769 20.29 0.00 45.94 1.98
2962 6662 7.790823 AAATTGTACTGCAAAAAGCTTGATT 57.209 28.000 0.00 0.00 45.94 2.57
3051 6751 1.591703 CTTCTCTGCAGGTACCGCA 59.408 57.895 23.63 23.63 37.88 5.69
3093 6793 2.827921 GAGAAGGGTTCCTACGGTGTTA 59.172 50.000 0.00 0.00 31.13 2.41
3099 6799 2.025898 GAGGAGAGAAGGGTTCCTACG 58.974 57.143 0.00 0.00 41.32 3.51
3124 6824 3.244215 TGGCTGACTCCTACAGAAAAGTG 60.244 47.826 0.00 0.00 37.54 3.16
3131 6831 5.923204 AGAAAATATGGCTGACTCCTACAG 58.077 41.667 0.00 0.00 38.27 2.74
3132 6832 5.957771 AGAAAATATGGCTGACTCCTACA 57.042 39.130 0.00 0.00 0.00 2.74
3133 6833 6.587273 AGAAGAAAATATGGCTGACTCCTAC 58.413 40.000 0.00 0.00 0.00 3.18
3134 6834 6.384015 TGAGAAGAAAATATGGCTGACTCCTA 59.616 38.462 0.00 0.00 0.00 2.94
3145 6845 4.891756 ACCCATGCCTGAGAAGAAAATATG 59.108 41.667 0.00 0.00 0.00 1.78
3158 6858 0.323633 TGAATCACCACCCATGCCTG 60.324 55.000 0.00 0.00 0.00 4.85
3160 6860 0.748450 CATGAATCACCACCCATGCC 59.252 55.000 0.00 0.00 31.43 4.40
3162 6862 1.407618 CTGCATGAATCACCACCCATG 59.592 52.381 0.00 0.00 39.35 3.66
3164 6864 0.405198 ACTGCATGAATCACCACCCA 59.595 50.000 0.00 0.00 0.00 4.51
3166 6866 1.665679 CGTACTGCATGAATCACCACC 59.334 52.381 0.00 0.00 0.00 4.61
3168 6868 1.368641 GCGTACTGCATGAATCACCA 58.631 50.000 0.00 0.00 45.45 4.17
3179 6879 1.999051 CACGATCCTTGCGTACTGC 59.001 57.895 0.00 3.22 40.44 4.40
3194 6894 3.108289 CACAGAGCCTCACGCACG 61.108 66.667 0.00 0.00 41.38 5.34
3197 6897 0.671781 ATTCACACAGAGCCTCACGC 60.672 55.000 0.00 0.00 37.98 5.34
3238 6938 3.246880 ACCCCTGTCCCACGTTCC 61.247 66.667 0.00 0.00 0.00 3.62
3249 6949 0.101399 CTCATCTTCGACGACCCCTG 59.899 60.000 0.00 0.00 0.00 4.45
3282 6982 7.119262 TGACTTTACCTGCTTAGAATTTGCTAC 59.881 37.037 0.00 0.00 0.00 3.58
3288 6988 5.250774 TCCCTGACTTTACCTGCTTAGAATT 59.749 40.000 0.00 0.00 0.00 2.17
3289 6989 4.783227 TCCCTGACTTTACCTGCTTAGAAT 59.217 41.667 0.00 0.00 0.00 2.40
3305 7005 2.011046 GCACTTCAGCATCTCCCTGAC 61.011 57.143 0.00 0.00 38.93 3.51
3307 7007 0.035725 TGCACTTCAGCATCTCCCTG 60.036 55.000 0.00 0.00 40.11 4.45
3310 7010 1.404391 CCATTGCACTTCAGCATCTCC 59.596 52.381 0.00 0.00 45.19 3.71
3331 7031 7.454694 TGCCTGCAGATTCTCTTATAGGTTATA 59.545 37.037 17.39 0.00 0.00 0.98
3332 7032 6.270927 TGCCTGCAGATTCTCTTATAGGTTAT 59.729 38.462 17.39 0.00 0.00 1.89
3333 7033 5.602561 TGCCTGCAGATTCTCTTATAGGTTA 59.397 40.000 17.39 0.00 0.00 2.85
3334 7034 4.410228 TGCCTGCAGATTCTCTTATAGGTT 59.590 41.667 17.39 0.00 0.00 3.50
3335 7035 3.969976 TGCCTGCAGATTCTCTTATAGGT 59.030 43.478 17.39 0.00 0.00 3.08
3336 7036 4.613925 TGCCTGCAGATTCTCTTATAGG 57.386 45.455 17.39 0.00 0.00 2.57
3337 7037 7.167924 TCTATGCCTGCAGATTCTCTTATAG 57.832 40.000 17.39 10.30 0.00 1.31
3349 7049 2.355132 CAGCTTCTTTCTATGCCTGCAG 59.645 50.000 6.78 6.78 0.00 4.41
3359 7059 4.283363 TCTTGCAGATCAGCTTCTTTCT 57.717 40.909 11.68 0.00 34.99 2.52
3366 7066 4.880696 GGAGTATTTTCTTGCAGATCAGCT 59.119 41.667 11.68 0.00 34.99 4.24
3373 7073 4.033358 CGTGCTAGGAGTATTTTCTTGCAG 59.967 45.833 0.00 0.00 39.18 4.41
3379 7079 2.281762 CGTGCGTGCTAGGAGTATTTTC 59.718 50.000 0.00 0.00 0.00 2.29
3382 7082 1.100510 TCGTGCGTGCTAGGAGTATT 58.899 50.000 0.00 0.00 0.00 1.89
3384 7084 0.380733 CATCGTGCGTGCTAGGAGTA 59.619 55.000 0.00 0.00 0.00 2.59
3385 7085 1.139734 CATCGTGCGTGCTAGGAGT 59.860 57.895 0.00 0.00 0.00 3.85
3386 7086 1.139734 ACATCGTGCGTGCTAGGAG 59.860 57.895 0.00 0.00 0.00 3.69
3387 7087 1.153842 CACATCGTGCGTGCTAGGA 60.154 57.895 0.00 0.00 0.00 2.94
3388 7088 0.528466 ATCACATCGTGCGTGCTAGG 60.528 55.000 0.00 0.00 34.27 3.02
3389 7089 2.119671 TATCACATCGTGCGTGCTAG 57.880 50.000 0.00 0.00 34.27 3.42
3391 7091 0.999406 GTTATCACATCGTGCGTGCT 59.001 50.000 0.00 0.00 34.27 4.40
3392 7092 0.314259 CGTTATCACATCGTGCGTGC 60.314 55.000 0.00 0.00 34.27 5.34
3393 7093 0.314259 GCGTTATCACATCGTGCGTG 60.314 55.000 0.00 0.00 32.98 5.34
3394 7094 1.739093 CGCGTTATCACATCGTGCGT 61.739 55.000 0.00 0.00 39.31 5.24
3395 7095 1.084915 CGCGTTATCACATCGTGCG 60.085 57.895 0.00 0.00 38.04 5.34
3396 7096 4.851989 CGCGTTATCACATCGTGC 57.148 55.556 0.00 0.00 32.98 5.34
3397 7097 0.645355 AAGCGCGTTATCACATCGTG 59.355 50.000 8.43 0.00 37.98 4.35
3398 7098 0.645355 CAAGCGCGTTATCACATCGT 59.355 50.000 8.43 0.00 0.00 3.73
3399 7099 0.920664 TCAAGCGCGTTATCACATCG 59.079 50.000 8.43 0.00 0.00 3.84
3420 7120 0.788391 CGGTACCTGAAACACGAAGC 59.212 55.000 10.90 0.00 0.00 3.86
3421 7121 2.144482 ACGGTACCTGAAACACGAAG 57.856 50.000 10.90 0.00 0.00 3.79
3424 7127 3.119743 TCAGATACGGTACCTGAAACACG 60.120 47.826 9.83 0.00 34.38 4.49
3536 7239 5.105716 CGGAGAGGTGTCTAAAGATTTGAGA 60.106 44.000 0.00 0.00 30.97 3.27
3546 7249 1.835494 CCTGTCGGAGAGGTGTCTAA 58.165 55.000 12.86 0.00 36.95 2.10
3559 7272 1.569493 CGGACAAAACAGCCTGTCG 59.431 57.895 0.00 0.00 42.40 4.35
3562 7275 1.156736 CTACCGGACAAAACAGCCTG 58.843 55.000 9.46 0.00 0.00 4.85
3608 7333 4.079558 ACCCAGTGATATTTCAGAGCCAAT 60.080 41.667 0.00 0.00 30.85 3.16
3626 7351 7.339721 TGAGAATTCTACTGTACTAGAACCCAG 59.660 40.741 8.25 0.00 35.92 4.45
3858 7682 9.832445 CCTACAAGTTTATGTATCAATAGTGGT 57.168 33.333 0.00 0.00 35.37 4.16
3859 7683 9.273016 CCCTACAAGTTTATGTATCAATAGTGG 57.727 37.037 0.00 0.00 35.37 4.00
3860 7684 9.273016 CCCCTACAAGTTTATGTATCAATAGTG 57.727 37.037 0.00 0.00 35.37 2.74
3861 7685 8.999895 ACCCCTACAAGTTTATGTATCAATAGT 58.000 33.333 0.00 0.00 35.37 2.12
3862 7686 9.273016 CACCCCTACAAGTTTATGTATCAATAG 57.727 37.037 0.00 0.00 35.37 1.73
3863 7687 8.215050 CCACCCCTACAAGTTTATGTATCAATA 58.785 37.037 0.00 0.00 35.37 1.90
3864 7688 7.060421 CCACCCCTACAAGTTTATGTATCAAT 58.940 38.462 0.00 0.00 35.37 2.57
3865 7689 6.215841 TCCACCCCTACAAGTTTATGTATCAA 59.784 38.462 0.00 0.00 35.37 2.57
3866 7690 5.727279 TCCACCCCTACAAGTTTATGTATCA 59.273 40.000 0.00 0.00 35.37 2.15
3867 7691 6.243216 TCCACCCCTACAAGTTTATGTATC 57.757 41.667 0.00 0.00 35.37 2.24
3868 7692 6.645884 TTCCACCCCTACAAGTTTATGTAT 57.354 37.500 0.00 0.00 35.37 2.29
3869 7693 6.183361 TGTTTCCACCCCTACAAGTTTATGTA 60.183 38.462 0.00 0.00 34.75 2.29
3870 7694 5.074804 GTTTCCACCCCTACAAGTTTATGT 58.925 41.667 0.00 0.00 37.32 2.29
3871 7695 5.074115 TGTTTCCACCCCTACAAGTTTATG 58.926 41.667 0.00 0.00 0.00 1.90
3872 7696 5.163023 ACTGTTTCCACCCCTACAAGTTTAT 60.163 40.000 0.00 0.00 0.00 1.40
3873 7697 4.166531 ACTGTTTCCACCCCTACAAGTTTA 59.833 41.667 0.00 0.00 0.00 2.01
3874 7698 3.053170 ACTGTTTCCACCCCTACAAGTTT 60.053 43.478 0.00 0.00 0.00 2.66
3875 7699 2.512476 ACTGTTTCCACCCCTACAAGTT 59.488 45.455 0.00 0.00 0.00 2.66
3876 7700 2.132686 ACTGTTTCCACCCCTACAAGT 58.867 47.619 0.00 0.00 0.00 3.16
3877 7701 2.951229 ACTGTTTCCACCCCTACAAG 57.049 50.000 0.00 0.00 0.00 3.16
3878 7702 3.203487 AGAAACTGTTTCCACCCCTACAA 59.797 43.478 25.22 0.00 40.54 2.41
3879 7703 2.781174 AGAAACTGTTTCCACCCCTACA 59.219 45.455 25.22 0.00 40.54 2.74
3880 7704 3.503800 AGAAACTGTTTCCACCCCTAC 57.496 47.619 25.22 2.72 40.54 3.18
3881 7705 4.412858 TGTAAGAAACTGTTTCCACCCCTA 59.587 41.667 25.22 8.72 40.54 3.53
3882 7706 3.203487 TGTAAGAAACTGTTTCCACCCCT 59.797 43.478 25.22 7.07 40.54 4.79
3883 7707 3.558033 TGTAAGAAACTGTTTCCACCCC 58.442 45.455 25.22 12.32 40.54 4.95
3884 7708 4.457466 TCTGTAAGAAACTGTTTCCACCC 58.543 43.478 25.22 13.76 42.31 4.61
3902 7726 9.596308 AGTTTTATGGGGTTTTATAGTTTCTGT 57.404 29.630 0.00 0.00 0.00 3.41
3903 7727 9.855021 CAGTTTTATGGGGTTTTATAGTTTCTG 57.145 33.333 0.00 0.00 0.00 3.02
3904 7728 8.528643 GCAGTTTTATGGGGTTTTATAGTTTCT 58.471 33.333 0.00 0.00 0.00 2.52
3905 7729 7.762615 GGCAGTTTTATGGGGTTTTATAGTTTC 59.237 37.037 0.00 0.00 0.00 2.78
3906 7730 7.310796 GGGCAGTTTTATGGGGTTTTATAGTTT 60.311 37.037 0.00 0.00 0.00 2.66
3907 7731 6.155565 GGGCAGTTTTATGGGGTTTTATAGTT 59.844 38.462 0.00 0.00 0.00 2.24
3908 7732 5.659525 GGGCAGTTTTATGGGGTTTTATAGT 59.340 40.000 0.00 0.00 0.00 2.12
3909 7733 5.069914 GGGGCAGTTTTATGGGGTTTTATAG 59.930 44.000 0.00 0.00 0.00 1.31
3910 7734 4.963628 GGGGCAGTTTTATGGGGTTTTATA 59.036 41.667 0.00 0.00 0.00 0.98
3911 7735 3.778075 GGGGCAGTTTTATGGGGTTTTAT 59.222 43.478 0.00 0.00 0.00 1.40
3912 7736 3.174779 GGGGCAGTTTTATGGGGTTTTA 58.825 45.455 0.00 0.00 0.00 1.52
3913 7737 1.982226 GGGGCAGTTTTATGGGGTTTT 59.018 47.619 0.00 0.00 0.00 2.43
3914 7738 1.151199 AGGGGCAGTTTTATGGGGTTT 59.849 47.619 0.00 0.00 0.00 3.27
3915 7739 0.790339 AGGGGCAGTTTTATGGGGTT 59.210 50.000 0.00 0.00 0.00 4.11
3916 7740 0.335019 GAGGGGCAGTTTTATGGGGT 59.665 55.000 0.00 0.00 0.00 4.95
3917 7741 0.397114 GGAGGGGCAGTTTTATGGGG 60.397 60.000 0.00 0.00 0.00 4.96
3918 7742 0.334676 TGGAGGGGCAGTTTTATGGG 59.665 55.000 0.00 0.00 0.00 4.00
3919 7743 1.824852 GTTGGAGGGGCAGTTTTATGG 59.175 52.381 0.00 0.00 0.00 2.74
3920 7744 2.807676 AGTTGGAGGGGCAGTTTTATG 58.192 47.619 0.00 0.00 0.00 1.90
3921 7745 3.165071 CAAGTTGGAGGGGCAGTTTTAT 58.835 45.455 0.00 0.00 0.00 1.40
3922 7746 2.091555 ACAAGTTGGAGGGGCAGTTTTA 60.092 45.455 7.96 0.00 0.00 1.52
3923 7747 1.342975 ACAAGTTGGAGGGGCAGTTTT 60.343 47.619 7.96 0.00 0.00 2.43
3924 7748 0.261696 ACAAGTTGGAGGGGCAGTTT 59.738 50.000 7.96 0.00 0.00 2.66
3925 7749 0.178990 GACAAGTTGGAGGGGCAGTT 60.179 55.000 7.96 0.00 0.00 3.16
3926 7750 1.062488 AGACAAGTTGGAGGGGCAGT 61.062 55.000 7.96 0.00 0.00 4.40
3927 7751 0.607489 CAGACAAGTTGGAGGGGCAG 60.607 60.000 7.96 0.00 0.00 4.85
3928 7752 1.455849 CAGACAAGTTGGAGGGGCA 59.544 57.895 7.96 0.00 0.00 5.36
3929 7753 1.973812 GCAGACAAGTTGGAGGGGC 60.974 63.158 7.96 0.00 0.00 5.80
3930 7754 0.607489 CAGCAGACAAGTTGGAGGGG 60.607 60.000 7.96 0.00 0.00 4.79
3931 7755 0.109342 ACAGCAGACAAGTTGGAGGG 59.891 55.000 7.96 0.00 0.00 4.30
3932 7756 2.808543 GTTACAGCAGACAAGTTGGAGG 59.191 50.000 7.96 0.00 0.00 4.30
3933 7757 3.466836 TGTTACAGCAGACAAGTTGGAG 58.533 45.455 7.96 0.00 0.00 3.86
3934 7758 3.552132 TGTTACAGCAGACAAGTTGGA 57.448 42.857 7.96 0.00 0.00 3.53
3935 7759 4.630894 TTTGTTACAGCAGACAAGTTGG 57.369 40.909 7.96 0.00 37.12 3.77
3936 7760 6.264832 TGATTTTGTTACAGCAGACAAGTTG 58.735 36.000 0.00 0.00 37.12 3.16
3937 7761 6.449635 TGATTTTGTTACAGCAGACAAGTT 57.550 33.333 0.00 0.00 37.12 2.66
3938 7762 6.639632 ATGATTTTGTTACAGCAGACAAGT 57.360 33.333 0.00 0.00 37.12 3.16
3939 7763 7.584108 TGTATGATTTTGTTACAGCAGACAAG 58.416 34.615 0.00 0.00 37.12 3.16
3940 7764 7.503521 TGTATGATTTTGTTACAGCAGACAA 57.496 32.000 0.00 0.00 34.22 3.18
3941 7765 7.503521 TTGTATGATTTTGTTACAGCAGACA 57.496 32.000 0.00 0.00 0.00 3.41
3942 7766 8.690840 GTTTTGTATGATTTTGTTACAGCAGAC 58.309 33.333 0.00 0.00 0.00 3.51
3943 7767 7.865385 GGTTTTGTATGATTTTGTTACAGCAGA 59.135 33.333 0.00 0.00 0.00 4.26
3944 7768 7.651304 TGGTTTTGTATGATTTTGTTACAGCAG 59.349 33.333 0.00 0.00 0.00 4.24
3945 7769 7.436673 GTGGTTTTGTATGATTTTGTTACAGCA 59.563 33.333 0.00 0.00 0.00 4.41
3946 7770 7.095816 GGTGGTTTTGTATGATTTTGTTACAGC 60.096 37.037 0.00 0.00 0.00 4.40
3947 7771 7.383843 GGGTGGTTTTGTATGATTTTGTTACAG 59.616 37.037 0.00 0.00 0.00 2.74
3948 7772 7.210873 GGGTGGTTTTGTATGATTTTGTTACA 58.789 34.615 0.00 0.00 0.00 2.41
3949 7773 6.647481 GGGGTGGTTTTGTATGATTTTGTTAC 59.353 38.462 0.00 0.00 0.00 2.50
3950 7774 6.516860 CGGGGTGGTTTTGTATGATTTTGTTA 60.517 38.462 0.00 0.00 0.00 2.41
3951 7775 5.616270 GGGGTGGTTTTGTATGATTTTGTT 58.384 37.500 0.00 0.00 0.00 2.83
3952 7776 4.262249 CGGGGTGGTTTTGTATGATTTTGT 60.262 41.667 0.00 0.00 0.00 2.83
3953 7777 4.021894 TCGGGGTGGTTTTGTATGATTTTG 60.022 41.667 0.00 0.00 0.00 2.44
3954 7778 4.153411 TCGGGGTGGTTTTGTATGATTTT 58.847 39.130 0.00 0.00 0.00 1.82
3955 7779 3.768878 TCGGGGTGGTTTTGTATGATTT 58.231 40.909 0.00 0.00 0.00 2.17
3956 7780 3.443145 TCGGGGTGGTTTTGTATGATT 57.557 42.857 0.00 0.00 0.00 2.57
3957 7781 3.086282 GTTCGGGGTGGTTTTGTATGAT 58.914 45.455 0.00 0.00 0.00 2.45
3958 7782 2.106857 AGTTCGGGGTGGTTTTGTATGA 59.893 45.455 0.00 0.00 0.00 2.15
3959 7783 2.227865 CAGTTCGGGGTGGTTTTGTATG 59.772 50.000 0.00 0.00 0.00 2.39
3960 7784 2.510613 CAGTTCGGGGTGGTTTTGTAT 58.489 47.619 0.00 0.00 0.00 2.29
3961 7785 1.970092 CAGTTCGGGGTGGTTTTGTA 58.030 50.000 0.00 0.00 0.00 2.41
3962 7786 1.388837 GCAGTTCGGGGTGGTTTTGT 61.389 55.000 0.00 0.00 0.00 2.83
3963 7787 1.362355 GCAGTTCGGGGTGGTTTTG 59.638 57.895 0.00 0.00 0.00 2.44
3964 7788 1.076632 TGCAGTTCGGGGTGGTTTT 60.077 52.632 0.00 0.00 0.00 2.43
3965 7789 1.826487 GTGCAGTTCGGGGTGGTTT 60.826 57.895 0.00 0.00 0.00 3.27
3966 7790 2.203294 GTGCAGTTCGGGGTGGTT 60.203 61.111 0.00 0.00 0.00 3.67
3967 7791 4.265056 GGTGCAGTTCGGGGTGGT 62.265 66.667 0.00 0.00 0.00 4.16
3968 7792 3.783362 TTGGTGCAGTTCGGGGTGG 62.783 63.158 0.00 0.00 0.00 4.61
3969 7793 2.203280 TTGGTGCAGTTCGGGGTG 60.203 61.111 0.00 0.00 0.00 4.61
3970 7794 2.203294 GTTGGTGCAGTTCGGGGT 60.203 61.111 0.00 0.00 0.00 4.95
3971 7795 1.528309 AAGTTGGTGCAGTTCGGGG 60.528 57.895 0.00 0.00 0.00 5.73
3972 7796 1.101049 ACAAGTTGGTGCAGTTCGGG 61.101 55.000 7.96 0.00 0.00 5.14
3973 7797 0.307760 GACAAGTTGGTGCAGTTCGG 59.692 55.000 7.96 0.00 0.00 4.30
3974 7798 1.003545 CAGACAAGTTGGTGCAGTTCG 60.004 52.381 7.96 0.00 0.00 3.95
3975 7799 2.017049 ACAGACAAGTTGGTGCAGTTC 58.983 47.619 7.96 0.00 0.00 3.01
3976 7800 2.128771 ACAGACAAGTTGGTGCAGTT 57.871 45.000 7.96 0.00 0.00 3.16
3977 7801 1.745087 CAACAGACAAGTTGGTGCAGT 59.255 47.619 7.96 0.00 43.89 4.40
3978 7802 2.480224 CAACAGACAAGTTGGTGCAG 57.520 50.000 7.96 0.00 43.89 4.41
3995 7819 8.478877 AGGTGGTTTTGTATGATTTTGTTACAA 58.521 29.630 0.00 0.00 34.84 2.41
4005 7829 4.695455 CAGTTCGAGGTGGTTTTGTATGAT 59.305 41.667 0.00 0.00 0.00 2.45
4021 7845 1.227793 TGCCACATGTGCAGTTCGA 60.228 52.632 20.81 0.00 34.05 3.71
4069 7893 3.727227 CGAGGGTTTCTTTGTAAAAACGC 59.273 43.478 6.86 6.86 44.23 4.84
4181 8005 0.790814 GACGTGGGCGAAAGAAGAAG 59.209 55.000 0.00 0.00 42.00 2.85
4182 8006 0.601841 GGACGTGGGCGAAAGAAGAA 60.602 55.000 0.00 0.00 42.00 2.52
4183 8007 1.005394 GGACGTGGGCGAAAGAAGA 60.005 57.895 0.00 0.00 42.00 2.87
4332 8157 1.010685 GAAGCGCGAATAAGCAGGC 60.011 57.895 12.10 0.00 36.85 4.85
4383 8209 1.126846 CTGAAAAACTCTAGTGCGCCG 59.873 52.381 4.18 0.00 0.00 6.46
4394 8220 1.474077 GCATGATCGGCCTGAAAAACT 59.526 47.619 0.00 0.00 0.00 2.66
4425 8251 2.749621 AGCAGATCGACCCAATTTTCAC 59.250 45.455 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.