Multiple sequence alignment - TraesCS2B01G327200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G327200 chr2B 100.000 3853 0 0 1 3853 468554016 468550164 0.000000e+00 7116.0
1 TraesCS2B01G327200 chr2B 91.391 151 11 2 2828 2976 548773757 548773607 5.050000e-49 206.0
2 TraesCS2B01G327200 chr2B 90.850 153 12 2 2828 2978 401276582 401276430 1.810000e-48 204.0
3 TraesCS2B01G327200 chr2D 93.681 2089 79 13 754 2826 395558991 395556940 0.000000e+00 3077.0
4 TraesCS2B01G327200 chr2D 92.249 658 39 5 3197 3853 395556811 395556165 0.000000e+00 922.0
5 TraesCS2B01G327200 chr2D 90.116 516 35 7 217 729 395559550 395559048 0.000000e+00 656.0
6 TraesCS2B01G327200 chr2D 89.865 148 5 5 2976 3115 395556955 395556810 8.500000e-42 182.0
7 TraesCS2B01G327200 chr2A 95.111 1309 49 5 1520 2826 533831574 533830279 0.000000e+00 2049.0
8 TraesCS2B01G327200 chr2A 93.032 775 43 7 747 1514 533837509 533836739 0.000000e+00 1122.0
9 TraesCS2B01G327200 chr2A 90.810 457 20 10 217 669 533837947 533837509 3.310000e-165 592.0
10 TraesCS2B01G327200 chr2A 88.221 399 46 1 3246 3643 533830103 533829705 3.480000e-130 475.0
11 TraesCS2B01G327200 chr2A 89.571 163 14 3 2821 2980 768200855 768200693 1.810000e-48 204.0
12 TraesCS2B01G327200 chr2A 87.629 97 9 1 3740 3833 533696202 533696106 4.070000e-20 110.0
13 TraesCS2B01G327200 chr6B 85.454 1918 178 64 935 2825 116747799 116745956 0.000000e+00 1903.0
14 TraesCS2B01G327200 chr6B 92.667 150 9 2 2828 2975 561645358 561645209 8.380000e-52 215.0
15 TraesCS2B01G327200 chr6B 92.000 150 10 2 2829 2976 413647558 413647409 3.900000e-50 209.0
16 TraesCS2B01G327200 chr6B 91.860 86 5 2 3114 3198 154182744 154182828 6.760000e-23 119.0
17 TraesCS2B01G327200 chr6D 88.327 1482 145 15 1359 2825 54238648 54240116 0.000000e+00 1753.0
18 TraesCS2B01G327200 chr6D 87.123 365 37 6 935 1290 54238256 54238619 4.640000e-109 405.0
19 TraesCS2B01G327200 chr6D 82.176 432 46 11 1867 2294 54021555 54021959 3.690000e-90 342.0
20 TraesCS2B01G327200 chr6A 87.367 1504 143 25 1359 2825 61007512 61006019 0.000000e+00 1681.0
21 TraesCS2B01G327200 chr6A 89.272 261 23 3 1037 1293 61007797 61007538 4.800000e-84 322.0
22 TraesCS2B01G327200 chr5B 91.333 150 11 2 2829 2976 449000577 449000726 1.810000e-48 204.0
23 TraesCS2B01G327200 chr5B 74.873 394 86 13 1364 1749 314193696 314193308 2.380000e-37 167.0
24 TraesCS2B01G327200 chr5B 74.619 394 87 12 1364 1749 314276967 314277355 1.110000e-35 161.0
25 TraesCS2B01G327200 chr4B 90.850 153 11 3 2827 2976 568662299 568662147 6.530000e-48 202.0
26 TraesCS2B01G327200 chr4B 91.667 48 3 1 3162 3209 311235354 311235308 8.940000e-07 65.8
27 TraesCS2B01G327200 chr3B 88.304 171 16 4 2815 2982 114830472 114830641 6.530000e-48 202.0
28 TraesCS2B01G327200 chr1B 89.809 157 13 3 2824 2977 640069936 640069780 8.440000e-47 198.0
29 TraesCS2B01G327200 chr5A 75.949 395 80 15 1364 1749 365253857 365254245 5.080000e-44 189.0
30 TraesCS2B01G327200 chr7B 74.118 340 74 12 1378 1710 409712022 409711690 1.120000e-25 128.0
31 TraesCS2B01G327200 chr7B 91.011 89 6 2 3111 3198 159515856 159515943 6.760000e-23 119.0
32 TraesCS2B01G327200 chr1D 81.366 161 24 6 1595 1752 445589090 445589247 4.040000e-25 126.0
33 TraesCS2B01G327200 chrUn 91.860 86 5 2 3114 3198 234102935 234103019 6.760000e-23 119.0
34 TraesCS2B01G327200 chr4A 86.022 93 10 3 3110 3201 694846507 694846417 3.170000e-16 97.1
35 TraesCS2B01G327200 chr3D 91.304 46 2 2 3155 3198 67464416 67464461 1.160000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G327200 chr2B 468550164 468554016 3852 True 7116.00 7116 100.00000 1 3853 1 chr2B.!!$R2 3852
1 TraesCS2B01G327200 chr2D 395556165 395559550 3385 True 1209.25 3077 91.47775 217 3853 4 chr2D.!!$R1 3636
2 TraesCS2B01G327200 chr2A 533829705 533831574 1869 True 1262.00 2049 91.66600 1520 3643 2 chr2A.!!$R3 2123
3 TraesCS2B01G327200 chr2A 533836739 533837947 1208 True 857.00 1122 91.92100 217 1514 2 chr2A.!!$R4 1297
4 TraesCS2B01G327200 chr6B 116745956 116747799 1843 True 1903.00 1903 85.45400 935 2825 1 chr6B.!!$R1 1890
5 TraesCS2B01G327200 chr6D 54238256 54240116 1860 False 1079.00 1753 87.72500 935 2825 2 chr6D.!!$F2 1890
6 TraesCS2B01G327200 chr6A 61006019 61007797 1778 True 1001.50 1681 88.31950 1037 2825 2 chr6A.!!$R1 1788

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
153 154 0.037303 AGGCCCTCACTTGACATGTG 59.963 55.0 1.15 13.85 36.82 3.21 F
209 210 0.179056 CGGCCGGTTGATGGTAATCT 60.179 55.0 20.10 0.00 33.61 2.40 F
1945 2018 0.320421 TAGTGCTCCTGCGTGTTTCC 60.320 55.0 0.00 0.00 43.34 3.13 F
2827 2945 0.673644 GCGGGCAGCTACAAGAAAGA 60.674 55.0 1.25 0.00 44.04 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1338 1396 0.107214 CAAGTACGCCCATCCACCAT 60.107 55.000 0.00 0.00 0.00 3.55 R
1954 2027 2.101185 CACACCGTGCACGCAAAA 59.899 55.556 33.17 0.00 38.18 2.44 R
2840 2958 0.036306 ACGAGGGTTAGCCTTGGTTG 59.964 55.000 20.44 4.72 28.84 3.77 R
3833 3967 0.171007 CGGAAAAGATTGCCATGCGT 59.829 50.000 0.00 0.00 0.00 5.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.566760 TTTTCAACTAAGATCTTGTTGCAGA 57.433 32.000 27.89 18.62 40.34 4.26
27 28 7.566760 TTTCAACTAAGATCTTGTTGCAGAA 57.433 32.000 27.89 22.15 40.34 3.02
28 29 7.750229 TTCAACTAAGATCTTGTTGCAGAAT 57.250 32.000 27.89 10.46 40.34 2.40
29 30 7.750229 TCAACTAAGATCTTGTTGCAGAATT 57.250 32.000 27.89 8.24 40.34 2.17
30 31 8.169977 TCAACTAAGATCTTGTTGCAGAATTT 57.830 30.769 27.89 7.73 40.34 1.82
31 32 8.632679 TCAACTAAGATCTTGTTGCAGAATTTT 58.367 29.630 27.89 7.48 40.34 1.82
32 33 9.252962 CAACTAAGATCTTGTTGCAGAATTTTT 57.747 29.630 24.63 4.47 35.39 1.94
33 34 9.468532 AACTAAGATCTTGTTGCAGAATTTTTC 57.531 29.630 18.47 0.00 0.00 2.29
34 35 6.998258 AAGATCTTGTTGCAGAATTTTTCG 57.002 33.333 7.30 0.00 34.02 3.46
35 36 4.919754 AGATCTTGTTGCAGAATTTTTCGC 59.080 37.500 0.00 0.00 34.02 4.70
36 37 4.039151 TCTTGTTGCAGAATTTTTCGCA 57.961 36.364 0.00 0.00 37.40 5.10
37 38 4.428209 TCTTGTTGCAGAATTTTTCGCAA 58.572 34.783 12.20 12.20 42.38 4.85
38 39 4.503734 TCTTGTTGCAGAATTTTTCGCAAG 59.496 37.500 14.86 0.00 43.85 4.01
52 53 3.552604 TCGCAAGATAGGTTTTGTTGC 57.447 42.857 0.00 0.00 45.01 4.17
53 54 2.881513 TCGCAAGATAGGTTTTGTTGCA 59.118 40.909 6.22 0.00 45.01 4.08
54 55 3.316588 TCGCAAGATAGGTTTTGTTGCAA 59.683 39.130 0.00 0.00 45.01 4.08
55 56 4.047822 CGCAAGATAGGTTTTGTTGCAAA 58.952 39.130 0.00 0.00 42.96 3.68
56 57 4.505922 CGCAAGATAGGTTTTGTTGCAAAA 59.494 37.500 0.00 0.00 42.96 2.44
57 58 5.556194 CGCAAGATAGGTTTTGTTGCAAAAC 60.556 40.000 22.07 22.07 42.96 2.43
58 59 5.293079 GCAAGATAGGTTTTGTTGCAAAACA 59.707 36.000 27.57 15.56 42.48 2.83
59 60 6.018016 GCAAGATAGGTTTTGTTGCAAAACAT 60.018 34.615 27.57 24.88 42.48 2.71
60 61 7.170658 GCAAGATAGGTTTTGTTGCAAAACATA 59.829 33.333 27.57 25.81 42.48 2.29
61 62 9.039870 CAAGATAGGTTTTGTTGCAAAACATAA 57.960 29.630 27.57 17.46 39.03 1.90
62 63 9.606631 AAGATAGGTTTTGTTGCAAAACATAAA 57.393 25.926 27.57 14.62 39.03 1.40
63 64 9.040939 AGATAGGTTTTGTTGCAAAACATAAAC 57.959 29.630 27.57 22.74 39.03 2.01
64 65 6.429791 AGGTTTTGTTGCAAAACATAAACC 57.570 33.333 27.57 20.18 43.82 3.27
65 66 5.355630 AGGTTTTGTTGCAAAACATAAACCC 59.644 36.000 27.57 15.27 44.10 4.11
66 67 5.123979 GGTTTTGTTGCAAAACATAAACCCA 59.876 36.000 27.57 0.08 41.45 4.51
67 68 6.183360 GGTTTTGTTGCAAAACATAAACCCAT 60.183 34.615 27.57 0.00 41.45 4.00
68 69 6.610741 TTTGTTGCAAAACATAAACCCATC 57.389 33.333 0.00 0.00 32.01 3.51
69 70 5.282055 TGTTGCAAAACATAAACCCATCA 57.718 34.783 0.00 0.00 0.00 3.07
70 71 5.862845 TGTTGCAAAACATAAACCCATCAT 58.137 33.333 0.00 0.00 0.00 2.45
71 72 6.997655 TGTTGCAAAACATAAACCCATCATA 58.002 32.000 0.00 0.00 0.00 2.15
72 73 7.095910 TGTTGCAAAACATAAACCCATCATAG 58.904 34.615 0.00 0.00 0.00 2.23
73 74 7.039434 TGTTGCAAAACATAAACCCATCATAGA 60.039 33.333 0.00 0.00 0.00 1.98
74 75 7.658525 TGCAAAACATAAACCCATCATAGAT 57.341 32.000 0.00 0.00 0.00 1.98
75 76 7.715657 TGCAAAACATAAACCCATCATAGATC 58.284 34.615 0.00 0.00 0.00 2.75
76 77 7.341512 TGCAAAACATAAACCCATCATAGATCA 59.658 33.333 0.00 0.00 0.00 2.92
77 78 8.362639 GCAAAACATAAACCCATCATAGATCAT 58.637 33.333 0.00 0.00 0.00 2.45
80 81 7.458409 ACATAAACCCATCATAGATCATTGC 57.542 36.000 0.00 0.00 0.00 3.56
81 82 7.005902 ACATAAACCCATCATAGATCATTGCA 58.994 34.615 0.00 0.00 0.00 4.08
82 83 7.506599 ACATAAACCCATCATAGATCATTGCAA 59.493 33.333 0.00 0.00 0.00 4.08
83 84 5.779529 AACCCATCATAGATCATTGCAAC 57.220 39.130 0.00 0.00 0.00 4.17
84 85 4.795469 ACCCATCATAGATCATTGCAACA 58.205 39.130 0.00 0.00 0.00 3.33
85 86 4.581824 ACCCATCATAGATCATTGCAACAC 59.418 41.667 0.00 0.00 0.00 3.32
86 87 4.022589 CCCATCATAGATCATTGCAACACC 60.023 45.833 0.00 0.00 0.00 4.16
87 88 4.319984 CCATCATAGATCATTGCAACACCG 60.320 45.833 0.00 0.00 0.00 4.94
88 89 2.613595 TCATAGATCATTGCAACACCGC 59.386 45.455 0.00 0.00 0.00 5.68
89 90 2.401583 TAGATCATTGCAACACCGCT 57.598 45.000 0.00 0.00 0.00 5.52
90 91 1.538047 AGATCATTGCAACACCGCTT 58.462 45.000 0.00 0.00 0.00 4.68
91 92 2.710377 AGATCATTGCAACACCGCTTA 58.290 42.857 0.00 0.00 0.00 3.09
92 93 3.282021 AGATCATTGCAACACCGCTTAT 58.718 40.909 0.00 0.00 0.00 1.73
93 94 2.917701 TCATTGCAACACCGCTTATG 57.082 45.000 0.00 0.00 0.00 1.90
94 95 2.158559 TCATTGCAACACCGCTTATGT 58.841 42.857 0.00 0.00 0.00 2.29
95 96 2.556189 TCATTGCAACACCGCTTATGTT 59.444 40.909 0.00 0.00 40.95 2.71
96 97 3.005261 TCATTGCAACACCGCTTATGTTT 59.995 39.130 0.00 0.00 38.22 2.83
97 98 2.697431 TGCAACACCGCTTATGTTTC 57.303 45.000 0.00 0.00 38.22 2.78
98 99 1.950216 TGCAACACCGCTTATGTTTCA 59.050 42.857 0.00 0.00 38.22 2.69
99 100 2.359214 TGCAACACCGCTTATGTTTCAA 59.641 40.909 0.00 0.00 38.22 2.69
100 101 3.181486 TGCAACACCGCTTATGTTTCAAA 60.181 39.130 0.00 0.00 38.22 2.69
101 102 3.799420 GCAACACCGCTTATGTTTCAAAA 59.201 39.130 0.00 0.00 38.22 2.44
102 103 4.085107 GCAACACCGCTTATGTTTCAAAAG 60.085 41.667 0.00 0.00 38.22 2.27
103 104 3.638484 ACACCGCTTATGTTTCAAAAGC 58.362 40.909 0.00 0.00 41.71 3.51
104 105 3.067461 ACACCGCTTATGTTTCAAAAGCA 59.933 39.130 7.03 0.00 44.62 3.91
105 106 4.236935 CACCGCTTATGTTTCAAAAGCAT 58.763 39.130 7.03 0.00 44.62 3.79
106 107 5.048364 ACACCGCTTATGTTTCAAAAGCATA 60.048 36.000 7.03 0.00 44.62 3.14
107 108 5.512788 CACCGCTTATGTTTCAAAAGCATAG 59.487 40.000 7.03 0.00 44.62 2.23
108 109 5.183140 ACCGCTTATGTTTCAAAAGCATAGT 59.817 36.000 7.03 0.00 44.62 2.12
109 110 5.739161 CCGCTTATGTTTCAAAAGCATAGTC 59.261 40.000 7.03 0.00 44.62 2.59
110 111 5.739161 CGCTTATGTTTCAAAAGCATAGTCC 59.261 40.000 7.03 0.00 44.62 3.85
111 112 6.036470 GCTTATGTTTCAAAAGCATAGTCCC 58.964 40.000 1.62 0.00 43.98 4.46
112 113 6.127619 GCTTATGTTTCAAAAGCATAGTCCCT 60.128 38.462 1.62 0.00 43.98 4.20
113 114 5.649782 ATGTTTCAAAAGCATAGTCCCTG 57.350 39.130 0.00 0.00 0.00 4.45
114 115 4.469657 TGTTTCAAAAGCATAGTCCCTGT 58.530 39.130 0.00 0.00 0.00 4.00
115 116 4.892934 TGTTTCAAAAGCATAGTCCCTGTT 59.107 37.500 0.00 0.00 0.00 3.16
116 117 5.221224 TGTTTCAAAAGCATAGTCCCTGTTG 60.221 40.000 0.00 0.00 0.00 3.33
117 118 2.819608 TCAAAAGCATAGTCCCTGTTGC 59.180 45.455 0.00 0.00 35.34 4.17
118 119 2.557924 CAAAAGCATAGTCCCTGTTGCA 59.442 45.455 0.00 0.00 37.56 4.08
119 120 2.814805 AAGCATAGTCCCTGTTGCAT 57.185 45.000 0.00 0.00 37.56 3.96
120 121 3.931907 AAGCATAGTCCCTGTTGCATA 57.068 42.857 0.00 0.00 37.56 3.14
121 122 4.443978 AAGCATAGTCCCTGTTGCATAT 57.556 40.909 0.00 0.00 37.56 1.78
122 123 5.567037 AAGCATAGTCCCTGTTGCATATA 57.433 39.130 0.00 0.00 37.56 0.86
123 124 5.157940 AGCATAGTCCCTGTTGCATATAG 57.842 43.478 0.00 0.00 37.56 1.31
124 125 4.019860 AGCATAGTCCCTGTTGCATATAGG 60.020 45.833 4.81 4.81 37.56 2.57
125 126 4.020218 GCATAGTCCCTGTTGCATATAGGA 60.020 45.833 11.72 2.98 35.22 2.94
126 127 5.338708 GCATAGTCCCTGTTGCATATAGGAT 60.339 44.000 11.72 2.52 35.22 3.24
127 128 4.630644 AGTCCCTGTTGCATATAGGATG 57.369 45.455 11.72 0.00 33.33 3.51
128 129 4.234550 AGTCCCTGTTGCATATAGGATGA 58.765 43.478 11.72 1.18 33.33 2.92
129 130 4.848660 AGTCCCTGTTGCATATAGGATGAT 59.151 41.667 11.72 0.00 33.33 2.45
130 131 6.025539 AGTCCCTGTTGCATATAGGATGATA 58.974 40.000 11.72 0.00 33.33 2.15
131 132 6.675746 AGTCCCTGTTGCATATAGGATGATAT 59.324 38.462 11.72 0.00 33.33 1.63
132 133 7.846311 AGTCCCTGTTGCATATAGGATGATATA 59.154 37.037 11.72 0.00 33.33 0.86
133 134 8.654997 GTCCCTGTTGCATATAGGATGATATAT 58.345 37.037 11.72 0.00 33.33 0.86
134 135 9.897040 TCCCTGTTGCATATAGGATGATATATA 57.103 33.333 11.72 0.00 33.33 0.86
137 138 9.650539 CTGTTGCATATAGGATGATATATAGGC 57.349 37.037 6.78 6.78 40.37 3.93
138 139 8.597167 TGTTGCATATAGGATGATATATAGGCC 58.403 37.037 0.00 0.00 39.63 5.19
139 140 7.739995 TGCATATAGGATGATATATAGGCCC 57.260 40.000 0.00 0.00 39.63 5.80
140 141 7.490811 TGCATATAGGATGATATATAGGCCCT 58.509 38.462 0.00 0.00 39.63 5.19
141 142 7.621285 TGCATATAGGATGATATATAGGCCCTC 59.379 40.741 0.00 0.00 39.63 4.30
142 143 7.621285 GCATATAGGATGATATATAGGCCCTCA 59.379 40.741 0.00 0.00 36.27 3.86
143 144 8.976353 CATATAGGATGATATATAGGCCCTCAC 58.024 40.741 0.00 0.00 29.20 3.51
144 145 5.495710 AGGATGATATATAGGCCCTCACT 57.504 43.478 0.00 0.00 0.00 3.41
145 146 5.859429 AGGATGATATATAGGCCCTCACTT 58.141 41.667 0.00 0.00 0.00 3.16
146 147 5.664908 AGGATGATATATAGGCCCTCACTTG 59.335 44.000 0.00 0.00 0.00 3.16
147 148 5.663106 GGATGATATATAGGCCCTCACTTGA 59.337 44.000 0.00 0.00 0.00 3.02
148 149 6.407525 GGATGATATATAGGCCCTCACTTGAC 60.408 46.154 0.00 0.00 0.00 3.18
149 150 5.402630 TGATATATAGGCCCTCACTTGACA 58.597 41.667 0.00 0.00 0.00 3.58
150 151 6.025539 TGATATATAGGCCCTCACTTGACAT 58.974 40.000 0.00 0.00 0.00 3.06
151 152 4.630644 ATATAGGCCCTCACTTGACATG 57.369 45.455 0.00 0.00 0.00 3.21
152 153 1.656587 TAGGCCCTCACTTGACATGT 58.343 50.000 0.00 0.00 0.00 3.21
153 154 0.037303 AGGCCCTCACTTGACATGTG 59.963 55.000 1.15 13.85 36.82 3.21
154 155 0.250901 GGCCCTCACTTGACATGTGT 60.251 55.000 18.05 0.00 36.83 3.72
155 156 1.160137 GCCCTCACTTGACATGTGTC 58.840 55.000 18.05 6.21 44.97 3.67
166 167 3.482722 GACATGTGTCATTCAGGCAAG 57.517 47.619 1.15 0.00 44.18 4.01
167 168 2.163010 GACATGTGTCATTCAGGCAAGG 59.837 50.000 1.15 0.00 44.18 3.61
168 169 2.165167 CATGTGTCATTCAGGCAAGGT 58.835 47.619 0.00 0.00 30.62 3.50
169 170 1.608055 TGTGTCATTCAGGCAAGGTG 58.392 50.000 0.00 0.00 30.62 4.00
170 171 0.883833 GTGTCATTCAGGCAAGGTGG 59.116 55.000 0.00 0.00 30.62 4.61
171 172 0.895100 TGTCATTCAGGCAAGGTGGC 60.895 55.000 0.00 0.00 44.10 5.01
199 200 4.481112 GCTGCAATCGGCCGGTTG 62.481 66.667 40.30 40.30 43.89 3.77
200 201 2.745884 CTGCAATCGGCCGGTTGA 60.746 61.111 46.37 31.19 43.89 3.18
201 202 2.045438 TGCAATCGGCCGGTTGAT 60.045 55.556 46.37 22.69 43.89 2.57
202 203 2.327002 CTGCAATCGGCCGGTTGATG 62.327 60.000 46.37 33.70 43.89 3.07
203 204 3.110139 CAATCGGCCGGTTGATGG 58.890 61.111 41.57 18.45 0.00 3.51
204 205 1.748879 CAATCGGCCGGTTGATGGT 60.749 57.895 41.57 9.11 0.00 3.55
205 206 0.462937 CAATCGGCCGGTTGATGGTA 60.463 55.000 41.57 13.00 0.00 3.25
206 207 0.253610 AATCGGCCGGTTGATGGTAA 59.746 50.000 25.77 0.00 0.00 2.85
207 208 0.472471 ATCGGCCGGTTGATGGTAAT 59.528 50.000 27.83 3.72 0.00 1.89
208 209 0.179067 TCGGCCGGTTGATGGTAATC 60.179 55.000 27.83 0.00 0.00 1.75
209 210 0.179056 CGGCCGGTTGATGGTAATCT 60.179 55.000 20.10 0.00 33.61 2.40
210 211 1.745827 CGGCCGGTTGATGGTAATCTT 60.746 52.381 20.10 0.00 33.61 2.40
211 212 2.375146 GGCCGGTTGATGGTAATCTTT 58.625 47.619 1.90 0.00 33.61 2.52
212 213 2.758423 GGCCGGTTGATGGTAATCTTTT 59.242 45.455 1.90 0.00 33.61 2.27
213 214 3.181490 GGCCGGTTGATGGTAATCTTTTC 60.181 47.826 1.90 0.00 33.61 2.29
214 215 3.181490 GCCGGTTGATGGTAATCTTTTCC 60.181 47.826 1.90 0.00 33.61 3.13
215 216 3.380320 CCGGTTGATGGTAATCTTTTCCC 59.620 47.826 0.00 0.00 33.61 3.97
220 221 6.605594 GGTTGATGGTAATCTTTTCCCATACA 59.394 38.462 0.00 0.00 37.81 2.29
277 278 7.819900 AGTTTGACTAAAAGATGTAGTAGGCAG 59.180 37.037 0.00 0.00 33.23 4.85
321 323 6.537660 GGGTAGTAATCACGTGCTTCTTATTT 59.462 38.462 11.67 2.55 0.00 1.40
322 324 7.707893 GGGTAGTAATCACGTGCTTCTTATTTA 59.292 37.037 11.67 0.00 0.00 1.40
323 325 9.257651 GGTAGTAATCACGTGCTTCTTATTTAT 57.742 33.333 11.67 0.00 0.00 1.40
373 375 3.396560 TCAGTCAGACATGCTTCAGTTG 58.603 45.455 2.66 0.00 0.00 3.16
427 430 4.611943 CCACGAGATGACCTACATTACAG 58.388 47.826 0.00 0.00 39.56 2.74
437 440 4.759782 ACCTACATTACAGATGAGTGTGC 58.240 43.478 0.00 0.00 31.46 4.57
489 492 0.962356 CAGCAAGGCCGGTCAAGATT 60.962 55.000 9.71 0.00 0.00 2.40
521 524 1.394618 CTTCTCCCTCTCCGTCGATT 58.605 55.000 0.00 0.00 0.00 3.34
531 534 1.145156 CCGTCGATTACCATGGCCA 59.855 57.895 13.04 8.56 0.00 5.36
695 698 2.452105 GACAGAGCGATTACGAGAACC 58.548 52.381 0.00 0.00 42.66 3.62
696 699 1.202154 ACAGAGCGATTACGAGAACCG 60.202 52.381 0.00 0.00 42.66 4.44
697 700 1.063616 CAGAGCGATTACGAGAACCGA 59.936 52.381 0.00 0.00 42.66 4.69
698 701 1.948145 AGAGCGATTACGAGAACCGAT 59.052 47.619 0.00 0.00 42.66 4.18
699 702 2.031857 AGAGCGATTACGAGAACCGATC 60.032 50.000 0.00 0.00 42.66 3.69
720 723 3.316029 TCACTTTCACAGCAACAATCCAG 59.684 43.478 0.00 0.00 0.00 3.86
724 727 2.229792 TCACAGCAACAATCCAGAACC 58.770 47.619 0.00 0.00 0.00 3.62
726 729 2.361757 CACAGCAACAATCCAGAACCAA 59.638 45.455 0.00 0.00 0.00 3.67
727 730 2.624838 ACAGCAACAATCCAGAACCAAG 59.375 45.455 0.00 0.00 0.00 3.61
728 731 2.624838 CAGCAACAATCCAGAACCAAGT 59.375 45.455 0.00 0.00 0.00 3.16
731 734 3.181476 GCAACAATCCAGAACCAAGTGTT 60.181 43.478 0.00 0.00 40.81 3.32
752 786 7.448469 AGTGTTCCTTGCCCATTATATAACATC 59.552 37.037 0.00 0.00 0.00 3.06
759 793 4.631169 GCCCATTATATAACATCCCCTGGG 60.631 50.000 18.12 18.12 43.00 4.45
799 833 0.604780 GACCCCATGATCCATCGCTG 60.605 60.000 0.00 0.00 0.00 5.18
891 931 5.514274 TCCAGATTAATTTGGCGAAATCC 57.486 39.130 18.16 0.00 34.38 3.01
956 997 4.763793 ACTCTATAAATCATGGCCATGCAC 59.236 41.667 36.47 0.00 38.65 4.57
1040 1090 0.585357 GCATCATCATCACGCTCACC 59.415 55.000 0.00 0.00 0.00 4.02
1114 1167 2.280552 GCCGGACACCCTGACTACA 61.281 63.158 5.05 0.00 0.00 2.74
1126 1179 3.318539 GACTACACCGACGCGCTCA 62.319 63.158 5.73 0.00 0.00 4.26
1246 1299 1.722507 GCAAACGTGAGCAAGCGAC 60.723 57.895 7.53 0.00 0.00 5.19
1290 1348 1.200716 CTACTTGTGGCACATGCTTGG 59.799 52.381 27.52 11.86 44.52 3.61
1336 1394 3.414549 TTTGACTTTTGTTGACTCGGC 57.585 42.857 0.00 0.00 0.00 5.54
1338 1396 3.462483 TGACTTTTGTTGACTCGGCTA 57.538 42.857 0.00 0.00 0.00 3.93
1424 1488 2.621526 ACGTCAAGTTCAATTTCCCCAC 59.378 45.455 0.00 0.00 0.00 4.61
1470 1534 0.669077 GGAGCATCATCGAGTACGGT 59.331 55.000 0.00 0.00 37.13 4.83
1945 2018 0.320421 TAGTGCTCCTGCGTGTTTCC 60.320 55.000 0.00 0.00 43.34 3.13
2199 2293 1.465689 CCAGCTAACAAATTGCGTCCG 60.466 52.381 0.00 0.00 0.00 4.79
2200 2294 1.196808 CAGCTAACAAATTGCGTCCGT 59.803 47.619 0.00 0.00 0.00 4.69
2201 2295 1.463444 AGCTAACAAATTGCGTCCGTC 59.537 47.619 0.00 0.00 0.00 4.79
2202 2296 1.465187 GCTAACAAATTGCGTCCGTCC 60.465 52.381 0.00 0.00 0.00 4.79
2203 2297 0.791422 TAACAAATTGCGTCCGTCCG 59.209 50.000 0.00 0.00 0.00 4.79
2216 2325 2.750637 GTCCGGTCCGAGCAGAGA 60.751 66.667 14.39 0.00 0.00 3.10
2237 2346 1.149627 CCTGTTGGACGGGGACAAA 59.850 57.895 0.00 0.00 41.01 2.83
2246 2355 1.228429 CGGGGACAAAAGGCTGGAA 60.228 57.895 0.00 0.00 0.00 3.53
2249 2358 1.185618 GGGACAAAAGGCTGGAACCC 61.186 60.000 0.00 0.00 0.00 4.11
2312 2421 2.683933 TCCAGCTCCCCTTCGTCC 60.684 66.667 0.00 0.00 0.00 4.79
2431 2543 1.195442 TACATGGCCGTCTCCAACCA 61.195 55.000 0.00 0.00 39.96 3.67
2469 2587 0.903454 CCTCCCCGTCACCTACAAGT 60.903 60.000 0.00 0.00 0.00 3.16
2480 2598 0.909610 CCTACAAGTCCCTGAGGGCA 60.910 60.000 14.20 0.00 43.94 5.36
2552 2670 1.335132 CCTACATGGTGGGCTACGGT 61.335 60.000 0.00 0.00 0.00 4.83
2601 2719 3.770040 CGTCCTCCATGCCGTCCA 61.770 66.667 0.00 0.00 0.00 4.02
2661 2779 0.752009 CCAGAGCTACCTCTACGCCA 60.752 60.000 0.00 0.00 46.59 5.69
2786 2904 1.964373 GTACACCAACGCACCCCTG 60.964 63.158 0.00 0.00 0.00 4.45
2826 2944 1.796796 GCGGGCAGCTACAAGAAAG 59.203 57.895 1.25 0.00 44.04 2.62
2827 2945 0.673644 GCGGGCAGCTACAAGAAAGA 60.674 55.000 1.25 0.00 44.04 2.52
2829 2947 2.151202 CGGGCAGCTACAAGAAAGAAA 58.849 47.619 0.00 0.00 0.00 2.52
2830 2948 2.552315 CGGGCAGCTACAAGAAAGAAAA 59.448 45.455 0.00 0.00 0.00 2.29
2831 2949 3.004315 CGGGCAGCTACAAGAAAGAAAAA 59.996 43.478 0.00 0.00 0.00 1.94
2850 2968 2.755952 AAAAGAGACCAACCAAGGCT 57.244 45.000 0.00 0.00 0.00 4.58
2851 2969 3.876309 AAAAGAGACCAACCAAGGCTA 57.124 42.857 0.00 0.00 0.00 3.93
2852 2970 3.876309 AAAGAGACCAACCAAGGCTAA 57.124 42.857 0.00 0.00 0.00 3.09
2853 2971 2.861147 AGAGACCAACCAAGGCTAAC 57.139 50.000 0.00 0.00 0.00 2.34
2854 2972 1.351350 AGAGACCAACCAAGGCTAACC 59.649 52.381 0.00 0.00 0.00 2.85
2855 2973 0.404426 AGACCAACCAAGGCTAACCC 59.596 55.000 0.00 0.00 36.11 4.11
2857 2975 0.404426 ACCAACCAAGGCTAACCCTC 59.596 55.000 0.00 0.00 45.62 4.30
2858 2976 0.676782 CCAACCAAGGCTAACCCTCG 60.677 60.000 0.00 0.00 45.62 4.63
2859 2977 0.036306 CAACCAAGGCTAACCCTCGT 59.964 55.000 0.00 0.00 45.62 4.18
2860 2978 0.769247 AACCAAGGCTAACCCTCGTT 59.231 50.000 0.00 0.00 45.62 3.85
2861 2979 0.036306 ACCAAGGCTAACCCTCGTTG 59.964 55.000 0.00 0.00 45.62 4.10
2862 2980 0.676782 CCAAGGCTAACCCTCGTTGG 60.677 60.000 0.00 0.00 45.62 3.77
2871 2989 5.576447 CTAACCCTCGTTGGCATTTATTT 57.424 39.130 0.00 0.00 33.17 1.40
2872 2990 6.687081 CTAACCCTCGTTGGCATTTATTTA 57.313 37.500 0.00 0.00 33.17 1.40
2873 2991 7.272037 CTAACCCTCGTTGGCATTTATTTAT 57.728 36.000 0.00 0.00 33.17 1.40
2874 2992 8.385898 CTAACCCTCGTTGGCATTTATTTATA 57.614 34.615 0.00 0.00 33.17 0.98
2875 2993 6.877611 ACCCTCGTTGGCATTTATTTATAG 57.122 37.500 0.00 0.00 0.00 1.31
2876 2994 6.597562 ACCCTCGTTGGCATTTATTTATAGA 58.402 36.000 0.00 0.00 0.00 1.98
2877 2995 7.057894 ACCCTCGTTGGCATTTATTTATAGAA 58.942 34.615 0.00 0.00 0.00 2.10
2878 2996 7.228706 ACCCTCGTTGGCATTTATTTATAGAAG 59.771 37.037 0.00 0.00 0.00 2.85
2879 2997 7.444183 CCCTCGTTGGCATTTATTTATAGAAGA 59.556 37.037 0.00 0.00 0.00 2.87
2880 2998 8.836413 CCTCGTTGGCATTTATTTATAGAAGAA 58.164 33.333 0.00 0.00 0.00 2.52
2882 3000 9.997482 TCGTTGGCATTTATTTATAGAAGAAAC 57.003 29.630 0.00 0.00 0.00 2.78
2886 3004 8.836413 TGGCATTTATTTATAGAAGAAACTCCG 58.164 33.333 0.00 0.00 0.00 4.63
2887 3005 7.803659 GGCATTTATTTATAGAAGAAACTCCGC 59.196 37.037 0.00 0.00 0.00 5.54
2888 3006 7.530861 GCATTTATTTATAGAAGAAACTCCGCG 59.469 37.037 0.00 0.00 0.00 6.46
2889 3007 8.761497 CATTTATTTATAGAAGAAACTCCGCGA 58.239 33.333 8.23 0.00 0.00 5.87
2890 3008 7.925703 TTATTTATAGAAGAAACTCCGCGAG 57.074 36.000 8.23 5.77 35.52 5.03
2891 3009 2.211353 ATAGAAGAAACTCCGCGAGC 57.789 50.000 8.23 0.00 32.04 5.03
2892 3010 0.885879 TAGAAGAAACTCCGCGAGCA 59.114 50.000 8.23 0.00 32.04 4.26
2893 3011 0.247736 AGAAGAAACTCCGCGAGCAT 59.752 50.000 8.23 0.00 32.04 3.79
2894 3012 0.647925 GAAGAAACTCCGCGAGCATC 59.352 55.000 8.23 5.48 32.04 3.91
2895 3013 0.037326 AAGAAACTCCGCGAGCATCA 60.037 50.000 8.23 0.00 32.04 3.07
2896 3014 0.737715 AGAAACTCCGCGAGCATCAC 60.738 55.000 8.23 0.00 32.04 3.06
2897 3015 2.014093 GAAACTCCGCGAGCATCACG 62.014 60.000 8.23 0.00 40.96 4.35
2907 3025 4.725758 GCATCACGCGTTCAAGTC 57.274 55.556 10.22 0.00 0.00 3.01
2908 3026 1.225475 GCATCACGCGTTCAAGTCG 60.225 57.895 10.22 0.00 0.00 4.18
2909 3027 1.416049 CATCACGCGTTCAAGTCGG 59.584 57.895 10.22 0.00 0.00 4.79
2910 3028 1.736645 ATCACGCGTTCAAGTCGGG 60.737 57.895 10.22 0.00 44.52 5.14
2911 3029 2.149803 ATCACGCGTTCAAGTCGGGA 62.150 55.000 10.22 0.00 42.30 5.14
2912 3030 1.736645 CACGCGTTCAAGTCGGGAT 60.737 57.895 10.22 0.00 42.30 3.85
2913 3031 1.005394 ACGCGTTCAAGTCGGGATT 60.005 52.632 5.58 0.00 42.30 3.01
2914 3032 0.601841 ACGCGTTCAAGTCGGGATTT 60.602 50.000 5.58 0.00 42.30 2.17
2915 3033 0.179225 CGCGTTCAAGTCGGGATTTG 60.179 55.000 0.00 0.00 42.30 2.32
2916 3034 1.153353 GCGTTCAAGTCGGGATTTGA 58.847 50.000 2.89 2.89 35.64 2.69
2917 3035 1.533731 GCGTTCAAGTCGGGATTTGAA 59.466 47.619 13.30 13.30 42.26 2.69
2918 3036 2.161609 GCGTTCAAGTCGGGATTTGAAT 59.838 45.455 18.28 0.00 44.77 2.57
2919 3037 3.365969 GCGTTCAAGTCGGGATTTGAATT 60.366 43.478 18.28 0.00 44.77 2.17
2920 3038 4.403453 CGTTCAAGTCGGGATTTGAATTC 58.597 43.478 18.28 0.00 44.77 2.17
2921 3039 4.403453 GTTCAAGTCGGGATTTGAATTCG 58.597 43.478 18.28 0.00 44.77 3.34
2922 3040 3.006940 TCAAGTCGGGATTTGAATTCGG 58.993 45.455 4.39 0.00 34.72 4.30
2923 3041 3.006940 CAAGTCGGGATTTGAATTCGGA 58.993 45.455 0.04 0.00 30.67 4.55
2924 3042 3.560636 AGTCGGGATTTGAATTCGGAT 57.439 42.857 0.04 0.00 0.00 4.18
2925 3043 3.206150 AGTCGGGATTTGAATTCGGATG 58.794 45.455 0.04 0.00 0.00 3.51
2926 3044 2.290641 GTCGGGATTTGAATTCGGATGG 59.709 50.000 0.04 0.00 0.00 3.51
2927 3045 1.608590 CGGGATTTGAATTCGGATGGG 59.391 52.381 0.04 0.00 0.00 4.00
2928 3046 1.341209 GGGATTTGAATTCGGATGGGC 59.659 52.381 0.04 0.00 0.00 5.36
2929 3047 2.310538 GGATTTGAATTCGGATGGGCT 58.689 47.619 0.04 0.00 0.00 5.19
2930 3048 3.486383 GGATTTGAATTCGGATGGGCTA 58.514 45.455 0.04 0.00 0.00 3.93
2931 3049 3.503748 GGATTTGAATTCGGATGGGCTAG 59.496 47.826 0.04 0.00 0.00 3.42
2932 3050 1.967319 TTGAATTCGGATGGGCTAGC 58.033 50.000 6.04 6.04 0.00 3.42
2933 3051 0.836606 TGAATTCGGATGGGCTAGCA 59.163 50.000 18.24 0.00 0.00 3.49
2934 3052 1.202687 TGAATTCGGATGGGCTAGCAG 60.203 52.381 18.24 0.27 0.00 4.24
2935 3053 0.536006 AATTCGGATGGGCTAGCAGC 60.536 55.000 18.24 0.00 41.46 5.25
2936 3054 1.699054 ATTCGGATGGGCTAGCAGCA 61.699 55.000 18.24 0.00 44.75 4.41
2937 3055 1.909459 TTCGGATGGGCTAGCAGCAA 61.909 55.000 18.24 0.00 44.75 3.91
2938 3056 2.182842 CGGATGGGCTAGCAGCAAC 61.183 63.158 18.24 2.44 44.75 4.17
2939 3057 1.825622 GGATGGGCTAGCAGCAACC 60.826 63.158 18.24 8.58 44.75 3.77
2940 3058 1.225704 GATGGGCTAGCAGCAACCT 59.774 57.895 18.24 0.00 44.75 3.50
2941 3059 0.817229 GATGGGCTAGCAGCAACCTC 60.817 60.000 18.24 4.24 44.75 3.85
2942 3060 1.565390 ATGGGCTAGCAGCAACCTCA 61.565 55.000 18.24 1.82 44.75 3.86
2943 3061 1.451028 GGGCTAGCAGCAACCTCAG 60.451 63.158 18.24 0.00 44.75 3.35
2944 3062 2.111582 GGCTAGCAGCAACCTCAGC 61.112 63.158 18.24 0.00 44.75 4.26
2945 3063 1.078567 GCTAGCAGCAACCTCAGCT 60.079 57.895 10.63 0.00 41.89 4.24
2950 3068 2.517414 AGCAACCTCAGCTGCCAA 59.483 55.556 9.47 0.00 41.61 4.52
2951 3069 1.602888 AGCAACCTCAGCTGCCAAG 60.603 57.895 9.47 0.70 41.61 3.61
2961 3079 3.365265 CTGCCAAGCCAACGGGTC 61.365 66.667 0.00 0.00 36.17 4.46
2964 3082 3.047877 CCAAGCCAACGGGTCGAC 61.048 66.667 7.13 7.13 36.17 4.20
2965 3083 3.411351 CAAGCCAACGGGTCGACG 61.411 66.667 9.92 1.01 40.31 5.12
2975 3093 4.222847 GGTCGACGCCCCATCCTC 62.223 72.222 9.92 0.00 0.00 3.71
2976 3094 4.570663 GTCGACGCCCCATCCTCG 62.571 72.222 0.00 0.00 0.00 4.63
2983 3101 2.844362 CCCCATCCTCGGCAGCTA 60.844 66.667 0.00 0.00 0.00 3.32
2984 3102 2.423446 CCCATCCTCGGCAGCTAC 59.577 66.667 0.00 0.00 0.00 3.58
2985 3103 2.434843 CCCATCCTCGGCAGCTACA 61.435 63.158 0.00 0.00 0.00 2.74
2986 3104 1.522092 CCATCCTCGGCAGCTACAA 59.478 57.895 0.00 0.00 0.00 2.41
2987 3105 0.531532 CCATCCTCGGCAGCTACAAG 60.532 60.000 0.00 0.00 0.00 3.16
2988 3106 0.461548 CATCCTCGGCAGCTACAAGA 59.538 55.000 0.00 0.00 0.00 3.02
2989 3107 1.134699 CATCCTCGGCAGCTACAAGAA 60.135 52.381 0.00 0.00 0.00 2.52
2993 3111 2.621338 CTCGGCAGCTACAAGAAATGA 58.379 47.619 0.00 0.00 0.00 2.57
2998 3116 3.307242 GGCAGCTACAAGAAATGACTACG 59.693 47.826 0.00 0.00 0.00 3.51
3003 3121 5.122869 AGCTACAAGAAATGACTACGACGTA 59.877 40.000 7.60 7.60 0.00 3.57
3116 3248 9.796180 ATATTCTGAGACGAGGTAATTACTACT 57.204 33.333 15.05 4.93 0.00 2.57
3117 3249 7.551035 TTCTGAGACGAGGTAATTACTACTC 57.449 40.000 15.05 12.35 0.00 2.59
3118 3250 6.054295 TCTGAGACGAGGTAATTACTACTCC 58.946 44.000 15.05 0.00 0.00 3.85
3119 3251 5.128919 TGAGACGAGGTAATTACTACTCCC 58.871 45.833 15.05 7.78 0.00 4.30
3120 3252 5.104193 TGAGACGAGGTAATTACTACTCCCT 60.104 44.000 15.05 11.49 0.00 4.20
3121 3253 5.375773 AGACGAGGTAATTACTACTCCCTC 58.624 45.833 15.05 10.70 0.00 4.30
3122 3254 4.468713 ACGAGGTAATTACTACTCCCTCC 58.531 47.826 15.05 0.00 0.00 4.30
3123 3255 3.501445 CGAGGTAATTACTACTCCCTCCG 59.499 52.174 15.05 5.61 0.00 4.63
3124 3256 4.468713 GAGGTAATTACTACTCCCTCCGT 58.531 47.826 15.05 0.00 0.00 4.69
3125 3257 4.468713 AGGTAATTACTACTCCCTCCGTC 58.531 47.826 15.05 0.00 0.00 4.79
3126 3258 3.571828 GGTAATTACTACTCCCTCCGTCC 59.428 52.174 15.05 0.00 0.00 4.79
3127 3259 2.378378 ATTACTACTCCCTCCGTCCC 57.622 55.000 0.00 0.00 0.00 4.46
3128 3260 1.302907 TTACTACTCCCTCCGTCCCT 58.697 55.000 0.00 0.00 0.00 4.20
3129 3261 1.302907 TACTACTCCCTCCGTCCCTT 58.697 55.000 0.00 0.00 0.00 3.95
3130 3262 1.302907 ACTACTCCCTCCGTCCCTTA 58.697 55.000 0.00 0.00 0.00 2.69
3131 3263 1.642762 ACTACTCCCTCCGTCCCTTAA 59.357 52.381 0.00 0.00 0.00 1.85
3132 3264 2.246849 ACTACTCCCTCCGTCCCTTAAT 59.753 50.000 0.00 0.00 0.00 1.40
3133 3265 1.497161 ACTCCCTCCGTCCCTTAATG 58.503 55.000 0.00 0.00 0.00 1.90
3134 3266 1.273666 ACTCCCTCCGTCCCTTAATGT 60.274 52.381 0.00 0.00 0.00 2.71
3135 3267 2.023695 ACTCCCTCCGTCCCTTAATGTA 60.024 50.000 0.00 0.00 0.00 2.29
3136 3268 3.036091 CTCCCTCCGTCCCTTAATGTAA 58.964 50.000 0.00 0.00 0.00 2.41
3137 3269 3.036091 TCCCTCCGTCCCTTAATGTAAG 58.964 50.000 0.00 0.00 35.56 2.34
3138 3270 3.036091 CCCTCCGTCCCTTAATGTAAGA 58.964 50.000 0.00 0.00 38.02 2.10
3139 3271 3.646637 CCCTCCGTCCCTTAATGTAAGAT 59.353 47.826 0.00 0.00 38.02 2.40
3140 3272 4.503296 CCCTCCGTCCCTTAATGTAAGATG 60.503 50.000 0.00 0.00 38.02 2.90
3141 3273 4.101119 CCTCCGTCCCTTAATGTAAGATGT 59.899 45.833 0.00 0.00 38.02 3.06
3142 3274 5.396436 CCTCCGTCCCTTAATGTAAGATGTT 60.396 44.000 0.00 0.00 38.02 2.71
3143 3275 6.057321 TCCGTCCCTTAATGTAAGATGTTT 57.943 37.500 0.00 0.00 38.02 2.83
3144 3276 6.478129 TCCGTCCCTTAATGTAAGATGTTTT 58.522 36.000 0.00 0.00 38.02 2.43
3145 3277 6.943718 TCCGTCCCTTAATGTAAGATGTTTTT 59.056 34.615 0.00 0.00 38.02 1.94
3187 3319 9.863845 TGTCAAAATACGTCTTACATTATGAGA 57.136 29.630 0.00 0.00 0.00 3.27
3194 3326 5.769484 GTCTTACATTATGAGACGGAGGA 57.231 43.478 0.00 0.00 34.53 3.71
3195 3327 5.764131 GTCTTACATTATGAGACGGAGGAG 58.236 45.833 0.00 0.00 34.53 3.69
3196 3328 5.299782 GTCTTACATTATGAGACGGAGGAGT 59.700 44.000 0.00 0.00 34.53 3.85
3197 3329 6.485984 GTCTTACATTATGAGACGGAGGAGTA 59.514 42.308 0.00 0.00 34.53 2.59
3241 3374 5.777850 ACCAAGGTGTTTATTAAGCGTTT 57.222 34.783 0.00 0.00 0.00 3.60
3305 3438 3.378427 GCAGTAATGAAACCATCTGGACC 59.622 47.826 2.55 0.00 38.94 4.46
3340 3474 1.577468 ATTGCTTCACGAACGACACA 58.423 45.000 0.14 0.00 0.00 3.72
3371 3505 3.385193 TCGTGAGAAGCAAATCTGACA 57.615 42.857 5.08 0.00 33.74 3.58
3399 3533 3.948719 GCGTTGGGTGGGAGGTGA 61.949 66.667 0.00 0.00 0.00 4.02
3447 3581 6.421485 ACCATCTAGACTGCATTTGAATCTT 58.579 36.000 0.00 0.00 0.00 2.40
3461 3595 7.307514 GCATTTGAATCTTGAAATTGCTTCACA 60.308 33.333 0.00 0.00 43.90 3.58
3462 3596 8.717821 CATTTGAATCTTGAAATTGCTTCACAT 58.282 29.630 0.00 0.00 43.90 3.21
3475 3609 3.445805 TGCTTCACATACGACACCATCTA 59.554 43.478 0.00 0.00 0.00 1.98
3505 3639 0.984230 TCCTTCCCAACTGCACTAGG 59.016 55.000 0.00 0.00 0.00 3.02
3519 3653 4.592942 TGCACTAGGATCAGCTTTGAATT 58.407 39.130 0.00 0.00 0.00 2.17
3523 3657 7.992608 TGCACTAGGATCAGCTTTGAATTATTA 59.007 33.333 0.00 0.00 0.00 0.98
3551 3685 0.944386 CTAAACGCTGTTGGTGCTGT 59.056 50.000 0.00 0.00 0.00 4.40
3564 3698 2.163613 TGGTGCTGTCACGTAGTATCAG 59.836 50.000 0.00 0.00 41.61 2.90
3567 3701 1.860399 GCTGTCACGTAGTATCAGGCG 60.860 57.143 0.00 0.00 41.61 5.52
3593 3727 4.509970 CGTCGGGCACAAAATTATCATCTA 59.490 41.667 0.00 0.00 0.00 1.98
3616 3750 8.976353 TCTATGTAGAAGAGCTCTTTGAATCTT 58.024 33.333 29.02 16.72 36.11 2.40
3738 3872 3.730662 CGCTTTCTCTCTTCTCTCCTTCG 60.731 52.174 0.00 0.00 0.00 3.79
3753 3887 2.243994 TCCTTCGTCTTATCCCTCCTCA 59.756 50.000 0.00 0.00 0.00 3.86
3754 3888 2.362717 CCTTCGTCTTATCCCTCCTCAC 59.637 54.545 0.00 0.00 0.00 3.51
3764 3898 2.103143 CTCCTCACCGCAGCGTAG 59.897 66.667 15.05 8.01 0.00 3.51
3792 3926 2.750637 GGTCGCCCGTCTCTCTCA 60.751 66.667 0.00 0.00 0.00 3.27
3838 3972 3.952508 TGGTCAGCCCACACGCAT 61.953 61.111 0.00 0.00 38.72 4.73
3840 3974 3.434319 GTCAGCCCACACGCATGG 61.434 66.667 0.00 0.00 39.71 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.995289 TCTGCAACAAGATCTTAGTTGAAAAA 58.005 30.769 32.27 20.42 43.93 1.94
2 3 7.566760 TCTGCAACAAGATCTTAGTTGAAAA 57.433 32.000 32.27 19.45 43.93 2.29
3 4 7.566760 TTCTGCAACAAGATCTTAGTTGAAA 57.433 32.000 32.27 24.33 43.93 2.69
4 5 7.750229 ATTCTGCAACAAGATCTTAGTTGAA 57.250 32.000 32.27 26.78 43.93 2.69
5 6 7.750229 AATTCTGCAACAAGATCTTAGTTGA 57.250 32.000 32.27 22.85 43.93 3.18
6 7 8.807667 AAAATTCTGCAACAAGATCTTAGTTG 57.192 30.769 28.11 28.11 44.01 3.16
7 8 9.468532 GAAAAATTCTGCAACAAGATCTTAGTT 57.531 29.630 7.86 11.77 0.00 2.24
8 9 7.805071 CGAAAAATTCTGCAACAAGATCTTAGT 59.195 33.333 7.86 6.21 0.00 2.24
9 10 7.201299 GCGAAAAATTCTGCAACAAGATCTTAG 60.201 37.037 7.86 1.55 32.28 2.18
10 11 6.582295 GCGAAAAATTCTGCAACAAGATCTTA 59.418 34.615 7.86 0.00 32.28 2.10
11 12 5.403466 GCGAAAAATTCTGCAACAAGATCTT 59.597 36.000 0.88 0.88 32.28 2.40
12 13 4.919754 GCGAAAAATTCTGCAACAAGATCT 59.080 37.500 0.00 0.00 32.28 2.75
13 14 4.681025 TGCGAAAAATTCTGCAACAAGATC 59.319 37.500 6.99 0.00 36.68 2.75
14 15 4.619973 TGCGAAAAATTCTGCAACAAGAT 58.380 34.783 6.99 0.00 36.68 2.40
15 16 4.039151 TGCGAAAAATTCTGCAACAAGA 57.961 36.364 6.99 0.00 36.68 3.02
16 17 4.503734 TCTTGCGAAAAATTCTGCAACAAG 59.496 37.500 13.96 0.00 41.00 3.16
17 18 4.428209 TCTTGCGAAAAATTCTGCAACAA 58.572 34.783 13.96 6.89 41.00 2.83
18 19 4.039151 TCTTGCGAAAAATTCTGCAACA 57.961 36.364 13.96 6.14 41.00 3.33
19 20 5.287035 CCTATCTTGCGAAAAATTCTGCAAC 59.713 40.000 13.96 0.00 41.00 4.17
20 21 5.048083 ACCTATCTTGCGAAAAATTCTGCAA 60.048 36.000 15.80 15.80 42.38 4.08
21 22 4.458989 ACCTATCTTGCGAAAAATTCTGCA 59.541 37.500 0.00 5.83 37.40 4.41
22 23 4.986622 ACCTATCTTGCGAAAAATTCTGC 58.013 39.130 0.00 0.00 0.00 4.26
23 24 7.382218 ACAAAACCTATCTTGCGAAAAATTCTG 59.618 33.333 0.00 0.00 0.00 3.02
24 25 7.433680 ACAAAACCTATCTTGCGAAAAATTCT 58.566 30.769 0.00 0.00 0.00 2.40
25 26 7.637709 ACAAAACCTATCTTGCGAAAAATTC 57.362 32.000 0.00 0.00 0.00 2.17
26 27 7.518211 GCAACAAAACCTATCTTGCGAAAAATT 60.518 33.333 0.00 0.00 0.00 1.82
27 28 6.073819 GCAACAAAACCTATCTTGCGAAAAAT 60.074 34.615 0.00 0.00 0.00 1.82
28 29 5.233263 GCAACAAAACCTATCTTGCGAAAAA 59.767 36.000 0.00 0.00 0.00 1.94
29 30 4.742659 GCAACAAAACCTATCTTGCGAAAA 59.257 37.500 0.00 0.00 0.00 2.29
30 31 4.202060 TGCAACAAAACCTATCTTGCGAAA 60.202 37.500 0.00 0.00 40.11 3.46
31 32 3.316588 TGCAACAAAACCTATCTTGCGAA 59.683 39.130 0.00 0.00 40.11 4.70
32 33 2.881513 TGCAACAAAACCTATCTTGCGA 59.118 40.909 0.00 0.00 40.11 5.10
33 34 3.281341 TGCAACAAAACCTATCTTGCG 57.719 42.857 0.00 0.00 40.11 4.85
34 35 5.293079 TGTTTTGCAACAAAACCTATCTTGC 59.707 36.000 25.08 8.76 40.10 4.01
35 36 6.900568 TGTTTTGCAACAAAACCTATCTTG 57.099 33.333 25.08 0.00 40.10 3.02
36 37 9.606631 TTTATGTTTTGCAACAAAACCTATCTT 57.393 25.926 25.08 11.10 46.17 2.40
37 38 9.040939 GTTTATGTTTTGCAACAAAACCTATCT 57.959 29.630 25.08 12.23 46.17 1.98
38 39 8.279800 GGTTTATGTTTTGCAACAAAACCTATC 58.720 33.333 25.08 16.97 46.17 2.08
39 40 7.227711 GGGTTTATGTTTTGCAACAAAACCTAT 59.772 33.333 26.26 17.85 46.89 2.57
40 41 6.539103 GGGTTTATGTTTTGCAACAAAACCTA 59.461 34.615 26.26 19.17 46.89 3.08
41 42 5.355630 GGGTTTATGTTTTGCAACAAAACCT 59.644 36.000 26.26 19.96 46.89 3.50
42 43 5.123979 TGGGTTTATGTTTTGCAACAAAACC 59.876 36.000 25.08 23.25 46.17 3.27
43 44 6.183309 TGGGTTTATGTTTTGCAACAAAAC 57.817 33.333 22.68 22.68 46.17 2.43
44 45 6.599244 TGATGGGTTTATGTTTTGCAACAAAA 59.401 30.769 0.00 1.50 46.17 2.44
45 46 6.115446 TGATGGGTTTATGTTTTGCAACAAA 58.885 32.000 0.00 0.00 46.17 2.83
46 47 5.674525 TGATGGGTTTATGTTTTGCAACAA 58.325 33.333 0.00 0.00 46.17 2.83
48 49 7.319646 TCTATGATGGGTTTATGTTTTGCAAC 58.680 34.615 0.00 0.00 0.00 4.17
49 50 7.473735 TCTATGATGGGTTTATGTTTTGCAA 57.526 32.000 0.00 0.00 0.00 4.08
50 51 7.341512 TGATCTATGATGGGTTTATGTTTTGCA 59.658 33.333 0.00 0.00 0.00 4.08
51 52 7.715657 TGATCTATGATGGGTTTATGTTTTGC 58.284 34.615 0.00 0.00 0.00 3.68
54 55 8.362639 GCAATGATCTATGATGGGTTTATGTTT 58.637 33.333 0.00 0.00 0.00 2.83
55 56 7.506599 TGCAATGATCTATGATGGGTTTATGTT 59.493 33.333 0.00 0.00 0.00 2.71
56 57 7.005902 TGCAATGATCTATGATGGGTTTATGT 58.994 34.615 0.00 0.00 0.00 2.29
57 58 7.457024 TGCAATGATCTATGATGGGTTTATG 57.543 36.000 0.00 0.00 0.00 1.90
58 59 7.506599 TGTTGCAATGATCTATGATGGGTTTAT 59.493 33.333 0.59 0.00 0.00 1.40
59 60 6.832900 TGTTGCAATGATCTATGATGGGTTTA 59.167 34.615 0.59 0.00 0.00 2.01
60 61 5.657745 TGTTGCAATGATCTATGATGGGTTT 59.342 36.000 0.59 0.00 0.00 3.27
61 62 5.068198 GTGTTGCAATGATCTATGATGGGTT 59.932 40.000 0.59 0.00 0.00 4.11
62 63 4.581824 GTGTTGCAATGATCTATGATGGGT 59.418 41.667 0.59 0.00 0.00 4.51
63 64 4.022589 GGTGTTGCAATGATCTATGATGGG 60.023 45.833 0.59 0.00 0.00 4.00
64 65 4.319984 CGGTGTTGCAATGATCTATGATGG 60.320 45.833 0.59 0.00 0.00 3.51
65 66 4.779987 CGGTGTTGCAATGATCTATGATG 58.220 43.478 0.59 0.00 0.00 3.07
66 67 3.251729 GCGGTGTTGCAATGATCTATGAT 59.748 43.478 0.59 0.00 34.15 2.45
67 68 2.613595 GCGGTGTTGCAATGATCTATGA 59.386 45.455 0.59 0.00 34.15 2.15
68 69 2.615447 AGCGGTGTTGCAATGATCTATG 59.385 45.455 0.59 0.00 37.31 2.23
69 70 2.923121 AGCGGTGTTGCAATGATCTAT 58.077 42.857 0.59 0.00 37.31 1.98
70 71 2.401583 AGCGGTGTTGCAATGATCTA 57.598 45.000 0.59 0.00 37.31 1.98
71 72 1.538047 AAGCGGTGTTGCAATGATCT 58.462 45.000 0.59 0.00 37.31 2.75
72 73 3.181497 ACATAAGCGGTGTTGCAATGATC 60.181 43.478 0.59 0.00 35.61 2.92
73 74 2.754552 ACATAAGCGGTGTTGCAATGAT 59.245 40.909 0.59 0.00 35.61 2.45
74 75 2.158559 ACATAAGCGGTGTTGCAATGA 58.841 42.857 0.59 0.00 35.61 2.57
75 76 2.634982 ACATAAGCGGTGTTGCAATG 57.365 45.000 0.59 0.00 36.87 2.82
76 77 3.005261 TGAAACATAAGCGGTGTTGCAAT 59.995 39.130 0.59 0.00 41.07 3.56
77 78 2.359214 TGAAACATAAGCGGTGTTGCAA 59.641 40.909 9.29 0.00 41.07 4.08
78 79 1.950216 TGAAACATAAGCGGTGTTGCA 59.050 42.857 8.05 8.05 41.60 4.08
79 80 2.697431 TGAAACATAAGCGGTGTTGC 57.303 45.000 5.41 4.54 39.57 4.17
80 81 4.085107 GCTTTTGAAACATAAGCGGTGTTG 60.085 41.667 10.05 0.00 38.26 3.33
81 82 4.048504 GCTTTTGAAACATAAGCGGTGTT 58.951 39.130 10.05 0.00 38.26 3.32
82 83 3.067461 TGCTTTTGAAACATAAGCGGTGT 59.933 39.130 16.93 0.00 46.16 4.16
83 84 3.637432 TGCTTTTGAAACATAAGCGGTG 58.363 40.909 16.93 0.00 46.16 4.94
84 85 4.519540 ATGCTTTTGAAACATAAGCGGT 57.480 36.364 16.93 9.24 46.16 5.68
85 86 5.640732 ACTATGCTTTTGAAACATAAGCGG 58.359 37.500 16.93 13.17 46.16 5.52
86 87 5.739161 GGACTATGCTTTTGAAACATAAGCG 59.261 40.000 16.93 9.19 46.16 4.68
87 88 6.036470 GGGACTATGCTTTTGAAACATAAGC 58.964 40.000 15.86 15.86 44.47 3.09
88 89 7.094205 ACAGGGACTATGCTTTTGAAACATAAG 60.094 37.037 0.00 0.00 36.02 1.73
89 90 6.719370 ACAGGGACTATGCTTTTGAAACATAA 59.281 34.615 0.00 0.00 36.02 1.90
90 91 6.245408 ACAGGGACTATGCTTTTGAAACATA 58.755 36.000 0.00 0.00 36.02 2.29
91 92 5.079643 ACAGGGACTATGCTTTTGAAACAT 58.920 37.500 0.00 0.00 36.02 2.71
92 93 4.469657 ACAGGGACTATGCTTTTGAAACA 58.530 39.130 0.00 0.00 36.02 2.83
93 94 5.222631 CAACAGGGACTATGCTTTTGAAAC 58.777 41.667 0.00 0.00 36.02 2.78
94 95 4.261994 GCAACAGGGACTATGCTTTTGAAA 60.262 41.667 0.00 0.00 44.01 2.69
95 96 3.255642 GCAACAGGGACTATGCTTTTGAA 59.744 43.478 0.00 0.00 44.01 2.69
96 97 2.819608 GCAACAGGGACTATGCTTTTGA 59.180 45.455 0.00 0.00 44.01 2.69
97 98 2.557924 TGCAACAGGGACTATGCTTTTG 59.442 45.455 0.00 0.00 46.41 2.44
98 99 2.875296 TGCAACAGGGACTATGCTTTT 58.125 42.857 0.00 0.00 46.41 2.27
99 100 2.584835 TGCAACAGGGACTATGCTTT 57.415 45.000 0.00 0.00 46.41 3.51
100 101 2.814805 ATGCAACAGGGACTATGCTT 57.185 45.000 0.00 0.00 46.41 3.91
101 102 4.019860 CCTATATGCAACAGGGACTATGCT 60.020 45.833 0.00 0.00 46.41 3.79
102 103 4.020218 TCCTATATGCAACAGGGACTATGC 60.020 45.833 10.68 0.00 46.44 3.14
103 104 5.745312 TCCTATATGCAACAGGGACTATG 57.255 43.478 10.68 0.00 36.02 2.23
104 105 6.025539 TCATCCTATATGCAACAGGGACTAT 58.974 40.000 10.68 0.00 36.02 2.12
105 106 5.402630 TCATCCTATATGCAACAGGGACTA 58.597 41.667 10.68 0.00 36.02 2.59
106 107 4.234550 TCATCCTATATGCAACAGGGACT 58.765 43.478 10.68 0.00 43.88 3.85
107 108 4.623932 TCATCCTATATGCAACAGGGAC 57.376 45.455 10.68 0.00 0.00 4.46
108 109 8.803600 ATATATCATCCTATATGCAACAGGGA 57.196 34.615 10.68 7.76 0.00 4.20
111 112 9.650539 GCCTATATATCATCCTATATGCAACAG 57.349 37.037 0.00 0.00 0.00 3.16
112 113 8.597167 GGCCTATATATCATCCTATATGCAACA 58.403 37.037 0.00 0.00 0.00 3.33
113 114 8.043710 GGGCCTATATATCATCCTATATGCAAC 58.956 40.741 0.84 0.00 0.00 4.17
114 115 7.963720 AGGGCCTATATATCATCCTATATGCAA 59.036 37.037 2.82 0.00 0.00 4.08
115 116 7.490811 AGGGCCTATATATCATCCTATATGCA 58.509 38.462 2.82 0.00 0.00 3.96
116 117 7.621285 TGAGGGCCTATATATCATCCTATATGC 59.379 40.741 5.73 0.00 0.00 3.14
117 118 8.976353 GTGAGGGCCTATATATCATCCTATATG 58.024 40.741 5.73 0.00 0.00 1.78
118 119 8.920716 AGTGAGGGCCTATATATCATCCTATAT 58.079 37.037 5.73 0.00 0.00 0.86
119 120 8.307227 AGTGAGGGCCTATATATCATCCTATA 57.693 38.462 5.73 0.00 0.00 1.31
120 121 7.185863 AGTGAGGGCCTATATATCATCCTAT 57.814 40.000 5.73 0.00 0.00 2.57
121 122 6.614100 AGTGAGGGCCTATATATCATCCTA 57.386 41.667 5.73 0.00 0.00 2.94
122 123 5.495710 AGTGAGGGCCTATATATCATCCT 57.504 43.478 5.73 0.00 0.00 3.24
123 124 5.663106 TCAAGTGAGGGCCTATATATCATCC 59.337 44.000 5.73 0.00 0.00 3.51
124 125 6.155221 TGTCAAGTGAGGGCCTATATATCATC 59.845 42.308 5.73 0.00 0.00 2.92
125 126 6.025539 TGTCAAGTGAGGGCCTATATATCAT 58.974 40.000 5.73 0.00 0.00 2.45
126 127 5.402630 TGTCAAGTGAGGGCCTATATATCA 58.597 41.667 5.73 0.00 0.00 2.15
127 128 6.070538 ACATGTCAAGTGAGGGCCTATATATC 60.071 42.308 5.73 0.00 0.00 1.63
128 129 5.787494 ACATGTCAAGTGAGGGCCTATATAT 59.213 40.000 5.73 0.00 0.00 0.86
129 130 5.012046 CACATGTCAAGTGAGGGCCTATATA 59.988 44.000 5.73 0.00 39.30 0.86
130 131 3.976654 ACATGTCAAGTGAGGGCCTATAT 59.023 43.478 5.73 0.00 0.00 0.86
131 132 3.134623 CACATGTCAAGTGAGGGCCTATA 59.865 47.826 5.73 0.00 39.30 1.31
132 133 2.092753 CACATGTCAAGTGAGGGCCTAT 60.093 50.000 5.73 0.00 39.30 2.57
133 134 1.278985 CACATGTCAAGTGAGGGCCTA 59.721 52.381 5.73 0.00 39.30 3.93
134 135 0.037303 CACATGTCAAGTGAGGGCCT 59.963 55.000 5.25 5.25 39.30 5.19
135 136 0.250901 ACACATGTCAAGTGAGGGCC 60.251 55.000 14.81 0.00 40.16 5.80
136 137 1.160137 GACACATGTCAAGTGAGGGC 58.840 55.000 14.81 0.00 44.18 5.19
146 147 2.163010 CCTTGCCTGAATGACACATGTC 59.837 50.000 5.02 5.02 44.97 3.06
147 148 2.165167 CCTTGCCTGAATGACACATGT 58.835 47.619 0.00 0.00 0.00 3.21
148 149 2.094906 CACCTTGCCTGAATGACACATG 60.095 50.000 0.00 0.00 0.00 3.21
149 150 2.165167 CACCTTGCCTGAATGACACAT 58.835 47.619 0.00 0.00 0.00 3.21
150 151 1.608055 CACCTTGCCTGAATGACACA 58.392 50.000 0.00 0.00 0.00 3.72
151 152 0.883833 CCACCTTGCCTGAATGACAC 59.116 55.000 0.00 0.00 0.00 3.67
152 153 0.895100 GCCACCTTGCCTGAATGACA 60.895 55.000 0.00 0.00 0.00 3.58
153 154 1.885871 GCCACCTTGCCTGAATGAC 59.114 57.895 0.00 0.00 0.00 3.06
154 155 4.421365 GCCACCTTGCCTGAATGA 57.579 55.556 0.00 0.00 0.00 2.57
182 183 4.481112 CAACCGGCCGATTGCAGC 62.481 66.667 30.73 0.00 43.89 5.25
183 184 2.114670 ATCAACCGGCCGATTGCAG 61.115 57.895 28.19 11.57 43.89 4.41
184 185 2.045438 ATCAACCGGCCGATTGCA 60.045 55.556 28.19 16.52 43.89 4.08
185 186 2.408835 CATCAACCGGCCGATTGC 59.591 61.111 28.19 0.00 40.16 3.56
186 187 0.462937 TACCATCAACCGGCCGATTG 60.463 55.000 27.14 27.14 0.00 2.67
187 188 0.253610 TTACCATCAACCGGCCGATT 59.746 50.000 30.73 15.33 0.00 3.34
188 189 0.472471 ATTACCATCAACCGGCCGAT 59.528 50.000 30.73 6.36 0.00 4.18
189 190 0.179067 GATTACCATCAACCGGCCGA 60.179 55.000 30.73 6.75 0.00 5.54
190 191 0.179056 AGATTACCATCAACCGGCCG 60.179 55.000 21.04 21.04 0.00 6.13
191 192 2.052782 AAGATTACCATCAACCGGCC 57.947 50.000 0.00 0.00 0.00 6.13
192 193 3.181490 GGAAAAGATTACCATCAACCGGC 60.181 47.826 0.00 0.00 0.00 6.13
193 194 3.380320 GGGAAAAGATTACCATCAACCGG 59.620 47.826 0.00 0.00 39.61 5.28
194 195 4.013728 TGGGAAAAGATTACCATCAACCG 58.986 43.478 0.00 0.00 45.03 4.44
277 278 3.117776 ACCCCTTCCGTCCCAAAATATAC 60.118 47.826 0.00 0.00 0.00 1.47
337 339 2.880268 TGACTGAACTCTGCATGTTTGG 59.120 45.455 6.67 5.84 0.00 3.28
338 340 3.811497 TCTGACTGAACTCTGCATGTTTG 59.189 43.478 6.67 6.11 0.00 2.93
373 375 3.771491 CGACTGCTCTGCGTGTGC 61.771 66.667 0.00 0.00 43.20 4.57
427 430 1.537202 AGAAAAAGGCGCACACTCATC 59.463 47.619 10.83 0.00 0.00 2.92
437 440 3.904136 ACATCAGAACAGAAAAAGGCG 57.096 42.857 0.00 0.00 0.00 5.52
489 492 1.448985 GGAGAAGCGTAAATGTGGCA 58.551 50.000 0.00 0.00 0.00 4.92
521 524 1.072266 ACTCAAAGGTGGCCATGGTA 58.928 50.000 9.72 0.00 0.00 3.25
531 534 7.809880 ACTATCTTAAGGGTTACTCAAAGGT 57.190 36.000 1.85 0.00 0.00 3.50
664 667 4.744795 ATCGCTCTGTCCTGAAAACTAT 57.255 40.909 0.00 0.00 0.00 2.12
670 673 2.089201 TCGTAATCGCTCTGTCCTGAA 58.911 47.619 0.00 0.00 36.96 3.02
680 683 1.674441 TGATCGGTTCTCGTAATCGCT 59.326 47.619 1.82 0.00 40.32 4.93
695 698 3.607422 TTGTTGCTGTGAAAGTGATCG 57.393 42.857 0.00 0.00 0.00 3.69
696 699 4.022935 TGGATTGTTGCTGTGAAAGTGATC 60.023 41.667 0.00 0.00 0.00 2.92
697 700 3.890756 TGGATTGTTGCTGTGAAAGTGAT 59.109 39.130 0.00 0.00 0.00 3.06
698 701 3.286353 TGGATTGTTGCTGTGAAAGTGA 58.714 40.909 0.00 0.00 0.00 3.41
699 702 3.316029 TCTGGATTGTTGCTGTGAAAGTG 59.684 43.478 0.00 0.00 0.00 3.16
726 729 6.668645 TGTTATATAATGGGCAAGGAACACT 58.331 36.000 0.00 0.00 0.00 3.55
727 730 6.952773 TGTTATATAATGGGCAAGGAACAC 57.047 37.500 0.00 0.00 0.00 3.32
728 731 6.719370 GGATGTTATATAATGGGCAAGGAACA 59.281 38.462 0.00 0.00 0.00 3.18
731 734 5.281506 GGGGATGTTATATAATGGGCAAGGA 60.282 44.000 0.00 0.00 0.00 3.36
732 735 4.956075 GGGGATGTTATATAATGGGCAAGG 59.044 45.833 0.00 0.00 0.00 3.61
734 737 5.518189 CCAGGGGATGTTATATAATGGGCAA 60.518 44.000 0.00 0.00 0.00 4.52
735 738 4.017591 CCAGGGGATGTTATATAATGGGCA 60.018 45.833 0.00 0.00 0.00 5.36
736 739 4.536765 CCAGGGGATGTTATATAATGGGC 58.463 47.826 0.00 0.00 0.00 5.36
737 740 5.129368 CCCAGGGGATGTTATATAATGGG 57.871 47.826 11.78 11.78 38.98 4.00
738 741 5.492524 AGACCCAGGGGATGTTATATAATGG 59.507 44.000 11.37 0.68 38.96 3.16
739 742 6.012508 ACAGACCCAGGGGATGTTATATAATG 60.013 42.308 11.37 0.00 36.09 1.90
740 743 6.098446 ACAGACCCAGGGGATGTTATATAAT 58.902 40.000 11.37 0.00 36.09 1.28
744 747 3.431411 ACAGACCCAGGGGATGTTATA 57.569 47.619 11.37 0.00 36.09 0.98
745 748 2.286935 ACAGACCCAGGGGATGTTAT 57.713 50.000 11.37 0.00 36.09 1.89
752 786 3.654273 TCTAATCTAACAGACCCAGGGG 58.346 50.000 11.37 6.87 42.03 4.79
759 793 7.361894 GGGTCGAAGTATCTAATCTAACAGAC 58.638 42.308 0.00 0.00 0.00 3.51
799 833 3.112709 GAACGCGAGCTGGGTCAC 61.113 66.667 15.93 0.00 43.99 3.67
891 931 1.128724 CTCGCTGCAACGACGTCTAG 61.129 60.000 14.70 0.96 37.09 2.43
980 1030 0.741915 CTTCTCTCCCGACTGCTACC 59.258 60.000 0.00 0.00 0.00 3.18
1024 1074 1.141665 CGGGTGAGCGTGATGATGA 59.858 57.895 0.00 0.00 0.00 2.92
1040 1090 1.008538 GCAAGAAACACAGCCACGG 60.009 57.895 0.00 0.00 0.00 4.94
1126 1179 2.484889 GAAGAAGAGCAACGACTTGGT 58.515 47.619 0.00 0.00 40.91 3.67
1254 1307 3.220999 TAGAAGCGGCACAGTGCGT 62.221 57.895 19.42 3.63 46.21 5.24
1255 1308 2.432456 TAGAAGCGGCACAGTGCG 60.432 61.111 19.42 15.02 46.21 5.34
1257 1310 0.792640 CAAGTAGAAGCGGCACAGTG 59.207 55.000 1.45 0.00 0.00 3.66
1261 1314 1.912371 GCCACAAGTAGAAGCGGCAC 61.912 60.000 1.45 0.00 39.38 5.01
1266 1324 1.135575 GCATGTGCCACAAGTAGAAGC 60.136 52.381 0.00 0.00 34.31 3.86
1336 1394 1.048601 AGTACGCCCATCCACCATAG 58.951 55.000 0.00 0.00 0.00 2.23
1338 1396 0.107214 CAAGTACGCCCATCCACCAT 60.107 55.000 0.00 0.00 0.00 3.55
1779 1843 2.981560 CTGCCAAGCGAACGCCATT 61.982 57.895 15.44 1.83 43.17 3.16
1954 2027 2.101185 CACACCGTGCACGCAAAA 59.899 55.556 33.17 0.00 38.18 2.44
2112 2185 2.589720 TCAGTTACCCGTGACAGAAGA 58.410 47.619 0.00 0.00 0.00 2.87
2199 2293 2.750637 TCTCTGCTCGGACCGGAC 60.751 66.667 15.25 0.00 0.00 4.79
2200 2294 2.438614 CTCTCTGCTCGGACCGGA 60.439 66.667 15.25 1.92 0.00 5.14
2201 2295 4.200283 GCTCTCTGCTCGGACCGG 62.200 72.222 15.25 0.00 38.95 5.28
2202 2296 4.200283 GGCTCTCTGCTCGGACCG 62.200 72.222 7.84 7.84 42.39 4.79
2203 2297 3.844090 GGGCTCTCTGCTCGGACC 61.844 72.222 0.00 0.00 42.39 4.46
2216 2325 4.974438 TCCCCGTCCAACAGGGCT 62.974 66.667 0.00 0.00 46.24 5.19
2219 2328 0.466555 TTTTGTCCCCGTCCAACAGG 60.467 55.000 0.00 0.00 0.00 4.00
2431 2543 2.217038 TTCTGGCAGGAGAAGGCGT 61.217 57.895 15.73 0.00 0.00 5.68
2661 2779 2.595655 GTTGGGATTAGGGCCGCT 59.404 61.111 0.00 0.00 0.00 5.52
2732 2850 4.865761 GCATAGTCGGCGCGGTCA 62.866 66.667 15.06 1.87 0.00 4.02
2786 2904 3.625099 TAGGCGAGGCAACCTACC 58.375 61.111 0.00 0.00 37.50 3.18
2810 2928 4.584327 TTTTTCTTTCTTGTAGCTGCCC 57.416 40.909 0.00 0.00 0.00 5.36
2830 2948 3.032265 AGCCTTGGTTGGTCTCTTTTT 57.968 42.857 0.00 0.00 0.00 1.94
2831 2949 2.755952 AGCCTTGGTTGGTCTCTTTT 57.244 45.000 0.00 0.00 0.00 2.27
2832 2950 3.487372 GTTAGCCTTGGTTGGTCTCTTT 58.513 45.455 0.00 0.00 0.00 2.52
2833 2951 2.224793 GGTTAGCCTTGGTTGGTCTCTT 60.225 50.000 0.00 0.00 0.00 2.85
2834 2952 1.351350 GGTTAGCCTTGGTTGGTCTCT 59.649 52.381 0.00 0.00 0.00 3.10
2835 2953 1.613520 GGGTTAGCCTTGGTTGGTCTC 60.614 57.143 0.00 0.00 34.45 3.36
2836 2954 0.404426 GGGTTAGCCTTGGTTGGTCT 59.596 55.000 0.00 0.00 34.45 3.85
2837 2955 0.404426 AGGGTTAGCCTTGGTTGGTC 59.596 55.000 0.00 0.00 34.45 4.02
2838 2956 0.404426 GAGGGTTAGCCTTGGTTGGT 59.596 55.000 3.86 0.00 34.45 3.67
2839 2957 0.676782 CGAGGGTTAGCCTTGGTTGG 60.677 60.000 9.76 0.00 34.45 3.77
2840 2958 0.036306 ACGAGGGTTAGCCTTGGTTG 59.964 55.000 20.44 4.72 28.84 3.77
2841 2959 0.769247 AACGAGGGTTAGCCTTGGTT 59.231 50.000 20.44 16.29 37.82 3.67
2842 2960 0.036306 CAACGAGGGTTAGCCTTGGT 59.964 55.000 20.44 12.48 34.44 3.67
2843 2961 0.676782 CCAACGAGGGTTAGCCTTGG 60.677 60.000 20.44 13.07 33.72 3.61
2844 2962 1.305930 GCCAACGAGGGTTAGCCTTG 61.306 60.000 15.57 15.57 35.15 3.61
2845 2963 1.002502 GCCAACGAGGGTTAGCCTT 60.003 57.895 3.86 0.00 35.15 4.35
2846 2964 1.562672 ATGCCAACGAGGGTTAGCCT 61.563 55.000 1.19 1.19 39.61 4.58
2847 2965 0.679960 AATGCCAACGAGGGTTAGCC 60.680 55.000 0.00 0.00 39.61 3.93
2848 2966 1.173913 AAATGCCAACGAGGGTTAGC 58.826 50.000 0.00 0.00 40.57 3.09
2849 2967 5.576447 AAATAAATGCCAACGAGGGTTAG 57.424 39.130 0.00 0.00 38.09 2.34
2850 2968 8.212312 TCTATAAATAAATGCCAACGAGGGTTA 58.788 33.333 0.00 0.00 38.09 2.85
2851 2969 7.057894 TCTATAAATAAATGCCAACGAGGGTT 58.942 34.615 0.00 0.00 38.09 4.11
2852 2970 6.597562 TCTATAAATAAATGCCAACGAGGGT 58.402 36.000 0.00 0.00 38.09 4.34
2853 2971 7.444183 TCTTCTATAAATAAATGCCAACGAGGG 59.556 37.037 0.00 0.00 38.09 4.30
2854 2972 8.378172 TCTTCTATAAATAAATGCCAACGAGG 57.622 34.615 0.00 0.00 41.84 4.63
2856 2974 9.997482 GTTTCTTCTATAAATAAATGCCAACGA 57.003 29.630 0.00 0.00 0.00 3.85
2860 2978 8.836413 CGGAGTTTCTTCTATAAATAAATGCCA 58.164 33.333 0.00 0.00 0.00 4.92
2861 2979 7.803659 GCGGAGTTTCTTCTATAAATAAATGCC 59.196 37.037 0.00 0.00 0.00 4.40
2862 2980 7.530861 CGCGGAGTTTCTTCTATAAATAAATGC 59.469 37.037 0.00 0.00 0.00 3.56
2863 2981 8.761497 TCGCGGAGTTTCTTCTATAAATAAATG 58.239 33.333 6.13 0.00 0.00 2.32
2864 2982 8.882415 TCGCGGAGTTTCTTCTATAAATAAAT 57.118 30.769 6.13 0.00 0.00 1.40
2865 2983 7.042925 GCTCGCGGAGTTTCTTCTATAAATAAA 60.043 37.037 6.13 0.00 31.39 1.40
2866 2984 6.420008 GCTCGCGGAGTTTCTTCTATAAATAA 59.580 38.462 6.13 0.00 31.39 1.40
2867 2985 5.919141 GCTCGCGGAGTTTCTTCTATAAATA 59.081 40.000 6.13 0.00 31.39 1.40
2868 2986 4.745620 GCTCGCGGAGTTTCTTCTATAAAT 59.254 41.667 6.13 0.00 31.39 1.40
2869 2987 4.110482 GCTCGCGGAGTTTCTTCTATAAA 58.890 43.478 6.13 0.00 31.39 1.40
2870 2988 3.129813 TGCTCGCGGAGTTTCTTCTATAA 59.870 43.478 6.13 0.00 31.39 0.98
2871 2989 2.686405 TGCTCGCGGAGTTTCTTCTATA 59.314 45.455 6.13 0.00 31.39 1.31
2872 2990 1.476891 TGCTCGCGGAGTTTCTTCTAT 59.523 47.619 6.13 0.00 31.39 1.98
2873 2991 0.885879 TGCTCGCGGAGTTTCTTCTA 59.114 50.000 6.13 0.00 31.39 2.10
2874 2992 0.247736 ATGCTCGCGGAGTTTCTTCT 59.752 50.000 6.13 0.00 31.39 2.85
2875 2993 0.647925 GATGCTCGCGGAGTTTCTTC 59.352 55.000 6.13 0.00 31.39 2.87
2876 2994 0.037326 TGATGCTCGCGGAGTTTCTT 60.037 50.000 6.13 0.00 31.39 2.52
2877 2995 0.737715 GTGATGCTCGCGGAGTTTCT 60.738 55.000 6.13 0.00 31.39 2.52
2878 2996 1.710339 GTGATGCTCGCGGAGTTTC 59.290 57.895 6.13 4.88 31.39 2.78
2879 2997 2.094659 CGTGATGCTCGCGGAGTTT 61.095 57.895 6.13 0.00 45.61 2.66
2880 2998 2.507102 CGTGATGCTCGCGGAGTT 60.507 61.111 6.13 0.00 45.61 3.01
2887 3005 1.057822 CTTGAACGCGTGATGCTCG 59.942 57.895 14.98 0.00 43.27 5.03
2888 3006 0.093705 GACTTGAACGCGTGATGCTC 59.906 55.000 14.98 6.74 43.27 4.26
2889 3007 1.617755 CGACTTGAACGCGTGATGCT 61.618 55.000 14.98 0.00 43.27 3.79
2890 3008 1.225475 CGACTTGAACGCGTGATGC 60.225 57.895 14.98 3.32 41.47 3.91
2891 3009 1.416049 CCGACTTGAACGCGTGATG 59.584 57.895 14.98 7.71 0.00 3.07
2892 3010 1.736645 CCCGACTTGAACGCGTGAT 60.737 57.895 14.98 0.00 0.00 3.06
2893 3011 2.149803 ATCCCGACTTGAACGCGTGA 62.150 55.000 14.98 1.78 0.00 4.35
2894 3012 1.289109 AATCCCGACTTGAACGCGTG 61.289 55.000 14.98 1.65 0.00 5.34
2895 3013 0.601841 AAATCCCGACTTGAACGCGT 60.602 50.000 5.58 5.58 0.00 6.01
2896 3014 0.179225 CAAATCCCGACTTGAACGCG 60.179 55.000 3.53 3.53 0.00 6.01
2897 3015 1.153353 TCAAATCCCGACTTGAACGC 58.847 50.000 0.00 0.00 0.00 4.84
2898 3016 4.403453 GAATTCAAATCCCGACTTGAACG 58.597 43.478 3.66 0.00 42.62 3.95
2899 3017 4.403453 CGAATTCAAATCCCGACTTGAAC 58.597 43.478 6.22 0.00 42.62 3.18
2900 3018 3.438781 CCGAATTCAAATCCCGACTTGAA 59.561 43.478 6.22 4.03 43.63 2.69
2901 3019 3.006940 CCGAATTCAAATCCCGACTTGA 58.993 45.455 6.22 0.00 0.00 3.02
2902 3020 3.006940 TCCGAATTCAAATCCCGACTTG 58.993 45.455 6.22 0.00 0.00 3.16
2903 3021 3.343941 TCCGAATTCAAATCCCGACTT 57.656 42.857 6.22 0.00 0.00 3.01
2904 3022 3.206150 CATCCGAATTCAAATCCCGACT 58.794 45.455 6.22 0.00 0.00 4.18
2905 3023 2.290641 CCATCCGAATTCAAATCCCGAC 59.709 50.000 6.22 0.00 0.00 4.79
2906 3024 2.571212 CCATCCGAATTCAAATCCCGA 58.429 47.619 6.22 0.00 0.00 5.14
2907 3025 1.608590 CCCATCCGAATTCAAATCCCG 59.391 52.381 6.22 0.00 0.00 5.14
2908 3026 1.341209 GCCCATCCGAATTCAAATCCC 59.659 52.381 6.22 0.00 0.00 3.85
2909 3027 2.310538 AGCCCATCCGAATTCAAATCC 58.689 47.619 6.22 0.00 0.00 3.01
2910 3028 3.057946 GCTAGCCCATCCGAATTCAAATC 60.058 47.826 2.29 0.00 0.00 2.17
2911 3029 2.887152 GCTAGCCCATCCGAATTCAAAT 59.113 45.455 2.29 0.00 0.00 2.32
2912 3030 2.297701 GCTAGCCCATCCGAATTCAAA 58.702 47.619 2.29 0.00 0.00 2.69
2913 3031 1.211703 TGCTAGCCCATCCGAATTCAA 59.788 47.619 13.29 0.00 0.00 2.69
2914 3032 0.836606 TGCTAGCCCATCCGAATTCA 59.163 50.000 13.29 0.00 0.00 2.57
2915 3033 1.517242 CTGCTAGCCCATCCGAATTC 58.483 55.000 13.29 0.00 0.00 2.17
2916 3034 0.536006 GCTGCTAGCCCATCCGAATT 60.536 55.000 13.29 0.00 34.48 2.17
2917 3035 1.072159 GCTGCTAGCCCATCCGAAT 59.928 57.895 13.29 0.00 34.48 3.34
2918 3036 1.909459 TTGCTGCTAGCCCATCCGAA 61.909 55.000 13.29 0.00 41.51 4.30
2919 3037 2.366393 TTGCTGCTAGCCCATCCGA 61.366 57.895 13.29 0.00 41.51 4.55
2920 3038 2.182842 GTTGCTGCTAGCCCATCCG 61.183 63.158 13.29 0.00 41.51 4.18
2921 3039 1.825622 GGTTGCTGCTAGCCCATCC 60.826 63.158 13.29 13.48 41.51 3.51
2922 3040 0.817229 GAGGTTGCTGCTAGCCCATC 60.817 60.000 13.29 8.42 41.51 3.51
2923 3041 1.225704 GAGGTTGCTGCTAGCCCAT 59.774 57.895 13.29 0.00 41.51 4.00
2924 3042 2.189191 CTGAGGTTGCTGCTAGCCCA 62.189 60.000 13.29 6.67 41.51 5.36
2925 3043 1.451028 CTGAGGTTGCTGCTAGCCC 60.451 63.158 13.29 5.48 41.51 5.19
2926 3044 2.111582 GCTGAGGTTGCTGCTAGCC 61.112 63.158 13.29 0.00 41.51 3.93
2927 3045 1.078567 AGCTGAGGTTGCTGCTAGC 60.079 57.895 8.10 8.10 40.62 3.42
2933 3051 1.602888 CTTGGCAGCTGAGGTTGCT 60.603 57.895 20.43 0.00 46.51 3.91
2934 3052 2.960170 CTTGGCAGCTGAGGTTGC 59.040 61.111 20.43 0.23 46.58 4.17
2935 3053 2.633509 GGCTTGGCAGCTGAGGTTG 61.634 63.158 20.43 3.83 46.44 3.77
2936 3054 2.282745 GGCTTGGCAGCTGAGGTT 60.283 61.111 20.43 0.00 46.44 3.50
2937 3055 3.137385 TTGGCTTGGCAGCTGAGGT 62.137 57.895 20.43 0.00 46.44 3.85
2938 3056 2.282674 TTGGCTTGGCAGCTGAGG 60.283 61.111 20.43 4.59 46.44 3.86
2939 3057 2.960170 GTTGGCTTGGCAGCTGAG 59.040 61.111 20.43 7.28 46.44 3.35
2940 3058 2.979676 CGTTGGCTTGGCAGCTGA 60.980 61.111 20.43 0.00 46.44 4.26
2941 3059 4.047059 CCGTTGGCTTGGCAGCTG 62.047 66.667 10.11 10.11 46.44 4.24
2944 3062 3.365265 GACCCGTTGGCTTGGCAG 61.365 66.667 0.00 0.00 33.59 4.85
2947 3065 3.047877 GTCGACCCGTTGGCTTGG 61.048 66.667 3.51 0.00 33.59 3.61
2948 3066 3.411351 CGTCGACCCGTTGGCTTG 61.411 66.667 10.58 0.00 33.59 4.01
2958 3076 4.222847 GAGGATGGGGCGTCGACC 62.223 72.222 9.26 9.26 0.00 4.79
2959 3077 4.570663 CGAGGATGGGGCGTCGAC 62.571 72.222 5.18 5.18 45.81 4.20
2966 3084 2.844362 TAGCTGCCGAGGATGGGG 60.844 66.667 0.00 0.00 32.83 4.96
2967 3085 1.971505 TTGTAGCTGCCGAGGATGGG 61.972 60.000 0.00 0.00 36.85 4.00
2968 3086 0.531532 CTTGTAGCTGCCGAGGATGG 60.532 60.000 0.00 0.00 0.00 3.51
2969 3087 0.461548 TCTTGTAGCTGCCGAGGATG 59.538 55.000 0.00 0.00 0.00 3.51
2970 3088 1.195115 TTCTTGTAGCTGCCGAGGAT 58.805 50.000 0.00 0.00 0.00 3.24
2971 3089 0.973632 TTTCTTGTAGCTGCCGAGGA 59.026 50.000 0.00 0.00 0.00 3.71
2972 3090 1.667724 CATTTCTTGTAGCTGCCGAGG 59.332 52.381 0.00 0.00 0.00 4.63
2973 3091 2.349886 GTCATTTCTTGTAGCTGCCGAG 59.650 50.000 0.00 0.00 0.00 4.63
2974 3092 2.028112 AGTCATTTCTTGTAGCTGCCGA 60.028 45.455 0.00 0.00 0.00 5.54
2975 3093 2.350522 AGTCATTTCTTGTAGCTGCCG 58.649 47.619 0.00 0.00 0.00 5.69
2976 3094 3.307242 CGTAGTCATTTCTTGTAGCTGCC 59.693 47.826 0.00 0.00 0.00 4.85
2977 3095 4.031878 GTCGTAGTCATTTCTTGTAGCTGC 59.968 45.833 0.00 0.00 0.00 5.25
2978 3096 4.263209 CGTCGTAGTCATTTCTTGTAGCTG 59.737 45.833 0.00 0.00 0.00 4.24
2979 3097 4.082895 ACGTCGTAGTCATTTCTTGTAGCT 60.083 41.667 0.00 0.00 0.00 3.32
2980 3098 4.164294 ACGTCGTAGTCATTTCTTGTAGC 58.836 43.478 0.00 0.00 0.00 3.58
2981 3099 6.769076 TCTACGTCGTAGTCATTTCTTGTAG 58.231 40.000 27.07 4.27 37.41 2.74
2982 3100 6.726258 TCTACGTCGTAGTCATTTCTTGTA 57.274 37.500 27.07 5.32 37.41 2.41
2983 3101 5.618056 TCTACGTCGTAGTCATTTCTTGT 57.382 39.130 27.07 0.00 37.41 3.16
2984 3102 6.967767 AGATTCTACGTCGTAGTCATTTCTTG 59.032 38.462 27.07 3.85 37.41 3.02
2985 3103 7.086230 AGATTCTACGTCGTAGTCATTTCTT 57.914 36.000 27.07 8.45 37.41 2.52
2986 3104 6.680874 AGATTCTACGTCGTAGTCATTTCT 57.319 37.500 27.07 19.40 37.41 2.52
2987 3105 7.697291 AGAAAGATTCTACGTCGTAGTCATTTC 59.303 37.037 27.07 26.38 38.49 2.17
2988 3106 7.536855 AGAAAGATTCTACGTCGTAGTCATTT 58.463 34.615 27.07 21.98 38.49 2.32
2989 3107 7.086230 AGAAAGATTCTACGTCGTAGTCATT 57.914 36.000 27.07 18.55 38.49 2.57
3003 3121 3.702045 AGGTAGCGCTGTAGAAAGATTCT 59.298 43.478 22.90 0.00 43.72 2.40
3018 3136 2.295253 ATTTTGAGACCGAGGTAGCG 57.705 50.000 0.00 0.00 0.00 4.26
3075 3193 7.608761 GTCTCAGAATATAAGAGACGGAGGTAT 59.391 40.741 13.19 0.00 45.88 2.73
3076 3194 6.935771 GTCTCAGAATATAAGAGACGGAGGTA 59.064 42.308 13.19 0.00 45.88 3.08
3077 3195 5.766174 GTCTCAGAATATAAGAGACGGAGGT 59.234 44.000 13.19 0.00 45.88 3.85
3115 3247 1.497161 ACATTAAGGGACGGAGGGAG 58.503 55.000 0.00 0.00 0.00 4.30
3116 3248 2.852714 TACATTAAGGGACGGAGGGA 57.147 50.000 0.00 0.00 0.00 4.20
3117 3249 3.036091 TCTTACATTAAGGGACGGAGGG 58.964 50.000 0.00 0.00 36.45 4.30
3118 3250 4.101119 ACATCTTACATTAAGGGACGGAGG 59.899 45.833 0.00 0.00 36.45 4.30
3119 3251 5.277857 ACATCTTACATTAAGGGACGGAG 57.722 43.478 0.00 0.00 36.45 4.63
3120 3252 5.687166 AACATCTTACATTAAGGGACGGA 57.313 39.130 0.00 0.00 36.45 4.69
3121 3253 6.753107 AAAACATCTTACATTAAGGGACGG 57.247 37.500 0.00 0.00 36.45 4.79
3161 3293 9.863845 TCTCATAATGTAAGACGTATTTTGACA 57.136 29.630 0.00 0.00 0.00 3.58
3172 3304 5.299782 ACTCCTCCGTCTCATAATGTAAGAC 59.700 44.000 0.00 0.00 36.82 3.01
3173 3305 5.446860 ACTCCTCCGTCTCATAATGTAAGA 58.553 41.667 0.00 0.00 0.00 2.10
3174 3306 5.776173 ACTCCTCCGTCTCATAATGTAAG 57.224 43.478 0.00 0.00 0.00 2.34
3175 3307 7.834881 AATACTCCTCCGTCTCATAATGTAA 57.165 36.000 0.00 0.00 0.00 2.41
3176 3308 7.834881 AAATACTCCTCCGTCTCATAATGTA 57.165 36.000 0.00 0.00 0.00 2.29
3177 3309 6.732896 AAATACTCCTCCGTCTCATAATGT 57.267 37.500 0.00 0.00 0.00 2.71
3178 3310 6.809196 GCTAAATACTCCTCCGTCTCATAATG 59.191 42.308 0.00 0.00 0.00 1.90
3179 3311 6.722129 AGCTAAATACTCCTCCGTCTCATAAT 59.278 38.462 0.00 0.00 0.00 1.28
3180 3312 6.016192 CAGCTAAATACTCCTCCGTCTCATAA 60.016 42.308 0.00 0.00 0.00 1.90
3181 3313 5.473846 CAGCTAAATACTCCTCCGTCTCATA 59.526 44.000 0.00 0.00 0.00 2.15
3182 3314 4.279671 CAGCTAAATACTCCTCCGTCTCAT 59.720 45.833 0.00 0.00 0.00 2.90
3183 3315 3.632604 CAGCTAAATACTCCTCCGTCTCA 59.367 47.826 0.00 0.00 0.00 3.27
3184 3316 3.884091 TCAGCTAAATACTCCTCCGTCTC 59.116 47.826 0.00 0.00 0.00 3.36
3185 3317 3.899726 TCAGCTAAATACTCCTCCGTCT 58.100 45.455 0.00 0.00 0.00 4.18
3186 3318 4.857509 ATCAGCTAAATACTCCTCCGTC 57.142 45.455 0.00 0.00 0.00 4.79
3187 3319 6.726490 TTTATCAGCTAAATACTCCTCCGT 57.274 37.500 0.00 0.00 0.00 4.69
3188 3320 7.494625 TGTTTTTATCAGCTAAATACTCCTCCG 59.505 37.037 0.00 0.00 34.33 4.63
3189 3321 8.732746 TGTTTTTATCAGCTAAATACTCCTCC 57.267 34.615 0.00 0.00 34.33 4.30
3190 3322 9.989869 GTTGTTTTTATCAGCTAAATACTCCTC 57.010 33.333 0.00 0.00 34.33 3.71
3191 3323 9.740710 AGTTGTTTTTATCAGCTAAATACTCCT 57.259 29.630 0.00 0.00 34.33 3.69
3222 3355 7.748691 TTCCTAAACGCTTAATAAACACCTT 57.251 32.000 0.00 0.00 0.00 3.50
3241 3374 7.450014 TGCAAATTCCTGAACACTTAATTCCTA 59.550 33.333 0.00 0.00 0.00 2.94
3305 3438 1.854126 GCAATTTCGGGATCAAATGCG 59.146 47.619 0.00 0.00 0.00 4.73
3340 3474 2.534298 CTTCTCACGATCACGCAGATT 58.466 47.619 0.00 0.00 43.96 2.40
3366 3500 3.181517 CCAACGCTGTCATGTATTGTCAG 60.182 47.826 0.00 0.00 42.31 3.51
3371 3505 2.083774 CACCCAACGCTGTCATGTATT 58.916 47.619 0.00 0.00 0.00 1.89
3399 3533 8.718734 GGTTTCAATACTCGAAATTACTTCACT 58.281 33.333 0.00 0.00 35.01 3.41
3430 3564 6.367969 GCAATTTCAAGATTCAAATGCAGTCT 59.632 34.615 0.00 0.00 0.00 3.24
3447 3581 4.083537 GGTGTCGTATGTGAAGCAATTTCA 60.084 41.667 0.00 0.00 43.40 2.69
3461 3595 2.554142 TCGTCGTAGATGGTGTCGTAT 58.446 47.619 0.00 0.00 45.05 3.06
3462 3596 2.008752 TCGTCGTAGATGGTGTCGTA 57.991 50.000 0.00 0.00 45.05 3.43
3475 3609 3.197116 AGTTGGGAAGGAAATATCGTCGT 59.803 43.478 0.00 0.00 0.00 4.34
3539 3673 1.139989 CTACGTGACAGCACCAACAG 58.860 55.000 0.00 0.00 42.09 3.16
3551 3685 1.731433 GCCCGCCTGATACTACGTGA 61.731 60.000 0.00 0.00 0.00 4.35
3567 3701 1.587933 TAATTTTGTGCCCGACGCCC 61.588 55.000 0.00 0.00 36.24 6.13
3593 3727 7.710475 GCTAAGATTCAAAGAGCTCTTCTACAT 59.290 37.037 28.58 17.48 34.14 2.29
3616 3750 5.981315 CCGGACGAATATTTGTTAAGAGCTA 59.019 40.000 9.75 0.00 0.00 3.32
3687 3821 2.184579 GCCCAGAGCTACGTGACC 59.815 66.667 0.00 0.00 38.99 4.02
3738 3872 0.389757 GCGGTGAGGAGGGATAAGAC 59.610 60.000 0.00 0.00 0.00 3.01
3762 3896 0.958382 GGCGACCAAATGTGTGGCTA 60.958 55.000 0.00 0.00 43.00 3.93
3764 3898 2.258286 GGCGACCAAATGTGTGGC 59.742 61.111 0.00 0.00 43.00 5.01
3792 3926 1.886730 TTCGGAGGTGGAGGAGGGAT 61.887 60.000 0.00 0.00 0.00 3.85
3833 3967 0.171007 CGGAAAAGATTGCCATGCGT 59.829 50.000 0.00 0.00 0.00 5.24
3834 3968 2.948093 CGGAAAAGATTGCCATGCG 58.052 52.632 0.00 0.00 0.00 4.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.