Multiple sequence alignment - TraesCS2B01G327000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G327000 chr2B 100.000 2729 0 0 770 3498 468443989 468446717 0.000000e+00 5040.0
1 TraesCS2B01G327000 chr2B 100.000 581 0 0 3671 4251 468446890 468447470 0.000000e+00 1074.0
2 TraesCS2B01G327000 chr2B 100.000 461 0 0 1 461 468443220 468443680 0.000000e+00 852.0
3 TraesCS2B01G327000 chr2A 95.938 2659 95 5 770 3415 533536296 533538954 0.000000e+00 4300.0
4 TraesCS2B01G327000 chr2A 93.019 573 31 5 3682 4251 533539319 533539885 0.000000e+00 828.0
5 TraesCS2B01G327000 chr2D 96.172 2612 91 6 893 3497 395277998 395280607 0.000000e+00 4261.0
6 TraesCS2B01G327000 chr2D 94.404 554 24 2 3701 4249 395280949 395281500 0.000000e+00 845.0
7 TraesCS2B01G327000 chr2D 86.308 409 42 9 1 404 469197606 469197207 2.350000e-117 433.0
8 TraesCS2B01G327000 chr2D 90.182 275 23 3 126 400 427517276 427517546 5.230000e-94 355.0
9 TraesCS2B01G327000 chr2D 90.182 275 23 3 126 400 427534306 427534576 5.230000e-94 355.0
10 TraesCS2B01G327000 chr2D 90.943 265 21 2 129 393 427535715 427535454 1.880000e-93 353.0
11 TraesCS2B01G327000 chr3B 94.667 375 18 2 1 373 708606125 708605751 7.920000e-162 580.0
12 TraesCS2B01G327000 chr3B 85.990 414 36 8 1 393 14243482 14243894 1.410000e-114 424.0
13 TraesCS2B01G327000 chr7B 90.024 411 26 8 1 398 401048738 401048330 6.300000e-143 518.0
14 TraesCS2B01G327000 chr1A 88.698 407 30 8 1 393 56609118 56608714 2.300000e-132 483.0
15 TraesCS2B01G327000 chr1A 81.664 589 70 15 3671 4251 421035376 421034818 5.010000e-124 455.0
16 TraesCS2B01G327000 chr3A 88.366 404 31 8 4 393 519212618 519212217 4.980000e-129 472.0
17 TraesCS2B01G327000 chr1D 90.977 266 21 2 129 394 217005368 217005106 5.230000e-94 355.0
18 TraesCS2B01G327000 chr1D 90.909 121 9 2 1 121 4730987 4730869 1.220000e-35 161.0
19 TraesCS2B01G327000 chr7A 93.548 124 8 0 1 124 727270341 727270464 7.260000e-43 185.0
20 TraesCS2B01G327000 chr7A 93.548 124 8 0 1 124 727295763 727295886 7.260000e-43 185.0
21 TraesCS2B01G327000 chr5B 97.059 34 1 0 365 398 293663426 293663393 1.650000e-04 58.4
22 TraesCS2B01G327000 chr5A 82.353 68 7 4 1 63 12901703 12901636 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G327000 chr2B 468443220 468447470 4250 False 2322 5040 100.0000 1 4251 3 chr2B.!!$F1 4250
1 TraesCS2B01G327000 chr2A 533536296 533539885 3589 False 2564 4300 94.4785 770 4251 2 chr2A.!!$F1 3481
2 TraesCS2B01G327000 chr2D 395277998 395281500 3502 False 2553 4261 95.2880 893 4249 2 chr2D.!!$F3 3356
3 TraesCS2B01G327000 chr1A 421034818 421035376 558 True 455 455 81.6640 3671 4251 1 chr1A.!!$R2 580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
427 428 0.031515 TATTCTCCTTCAGGCCGGGA 60.032 55.000 2.18 6.35 34.44 5.14 F
428 429 0.695803 ATTCTCCTTCAGGCCGGGAT 60.696 55.000 2.18 0.00 34.44 3.85 F
1638 1643 0.688087 GGAGGTTCGACCAGGAGGAT 60.688 60.000 0.00 0.00 41.95 3.24 F
1721 1726 1.335597 TGACTACACCAAAGACGCGAG 60.336 52.381 15.93 0.00 0.00 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1470 1475 0.673956 TCCTGTCTCTGTCCGAGTCG 60.674 60.000 5.29 5.29 40.75 4.18 R
2344 2353 0.811281 CCTGCCGAAAAATGTCCTCC 59.189 55.000 0.00 0.00 0.00 4.30 R
2441 2450 1.421268 TGGTCACCTGCTCAATGAAGT 59.579 47.619 0.00 0.00 0.00 3.01 R
3397 3413 1.970640 GGCCCCAAAATTTGACTGAGT 59.029 47.619 7.37 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.308530 CTTGTGTTGAAGGGATTTTCGC 58.691 45.455 0.00 0.00 0.00 4.70
22 23 2.582052 TGTGTTGAAGGGATTTTCGCT 58.418 42.857 0.00 0.00 41.77 4.93
28 29 2.286365 AAGGGATTTTCGCTTGGTCA 57.714 45.000 6.08 0.00 46.08 4.02
29 30 1.826385 AGGGATTTTCGCTTGGTCAG 58.174 50.000 0.00 0.00 36.11 3.51
30 31 1.351017 AGGGATTTTCGCTTGGTCAGA 59.649 47.619 0.00 0.00 36.11 3.27
31 32 1.468914 GGGATTTTCGCTTGGTCAGAC 59.531 52.381 0.00 0.00 0.00 3.51
32 33 2.427506 GGATTTTCGCTTGGTCAGACT 58.572 47.619 0.00 0.00 0.00 3.24
33 34 2.416893 GGATTTTCGCTTGGTCAGACTC 59.583 50.000 0.00 0.00 0.00 3.36
34 35 2.910688 TTTTCGCTTGGTCAGACTCT 57.089 45.000 0.00 0.00 0.00 3.24
35 36 2.910688 TTTCGCTTGGTCAGACTCTT 57.089 45.000 0.00 0.00 0.00 2.85
36 37 4.330944 TTTTCGCTTGGTCAGACTCTTA 57.669 40.909 0.00 0.00 0.00 2.10
37 38 3.299340 TTCGCTTGGTCAGACTCTTAC 57.701 47.619 0.00 0.00 0.00 2.34
38 39 1.544691 TCGCTTGGTCAGACTCTTACC 59.455 52.381 0.00 2.75 0.00 2.85
39 40 1.546476 CGCTTGGTCAGACTCTTACCT 59.454 52.381 10.23 0.00 34.23 3.08
40 41 2.028930 CGCTTGGTCAGACTCTTACCTT 60.029 50.000 10.23 0.00 34.23 3.50
41 42 3.555168 CGCTTGGTCAGACTCTTACCTTT 60.555 47.826 10.23 0.00 34.23 3.11
42 43 4.390264 GCTTGGTCAGACTCTTACCTTTT 58.610 43.478 10.23 0.00 34.23 2.27
43 44 5.548406 GCTTGGTCAGACTCTTACCTTTTA 58.452 41.667 10.23 0.00 34.23 1.52
44 45 6.174049 GCTTGGTCAGACTCTTACCTTTTAT 58.826 40.000 10.23 0.00 34.23 1.40
45 46 6.655425 GCTTGGTCAGACTCTTACCTTTTATT 59.345 38.462 10.23 0.00 34.23 1.40
46 47 7.822822 GCTTGGTCAGACTCTTACCTTTTATTA 59.177 37.037 10.23 0.00 34.23 0.98
47 48 9.892130 CTTGGTCAGACTCTTACCTTTTATTAT 57.108 33.333 10.23 0.00 34.23 1.28
90 91 3.882131 GCAGTAGCAGGGGATGAAA 57.118 52.632 0.00 0.00 41.58 2.69
91 92 1.383523 GCAGTAGCAGGGGATGAAAC 58.616 55.000 0.00 0.00 41.58 2.78
92 93 1.065126 GCAGTAGCAGGGGATGAAACT 60.065 52.381 0.00 0.00 41.58 2.66
93 94 2.170607 GCAGTAGCAGGGGATGAAACTA 59.829 50.000 0.00 0.00 41.58 2.24
94 95 3.181450 GCAGTAGCAGGGGATGAAACTAT 60.181 47.826 0.00 0.00 41.58 2.12
95 96 4.687219 GCAGTAGCAGGGGATGAAACTATT 60.687 45.833 0.00 0.00 41.58 1.73
96 97 5.454755 GCAGTAGCAGGGGATGAAACTATTA 60.455 44.000 0.00 0.00 41.58 0.98
97 98 6.591935 CAGTAGCAGGGGATGAAACTATTAA 58.408 40.000 0.00 0.00 0.00 1.40
98 99 7.054124 CAGTAGCAGGGGATGAAACTATTAAA 58.946 38.462 0.00 0.00 0.00 1.52
99 100 7.556275 CAGTAGCAGGGGATGAAACTATTAAAA 59.444 37.037 0.00 0.00 0.00 1.52
100 101 8.113462 AGTAGCAGGGGATGAAACTATTAAAAA 58.887 33.333 0.00 0.00 0.00 1.94
143 144 6.739331 AAAAACCACTTCCATACATTTGGA 57.261 33.333 0.00 0.00 44.08 3.53
144 145 5.722021 AAACCACTTCCATACATTTGGAC 57.278 39.130 0.00 0.00 45.42 4.02
145 146 4.657814 ACCACTTCCATACATTTGGACT 57.342 40.909 0.00 0.00 45.42 3.85
146 147 5.772393 ACCACTTCCATACATTTGGACTA 57.228 39.130 0.00 0.00 45.42 2.59
147 148 6.134535 ACCACTTCCATACATTTGGACTAA 57.865 37.500 0.00 0.00 45.42 2.24
148 149 6.731467 ACCACTTCCATACATTTGGACTAAT 58.269 36.000 0.00 0.00 45.42 1.73
149 150 6.603201 ACCACTTCCATACATTTGGACTAATG 59.397 38.462 5.21 5.21 45.42 1.90
150 151 6.603201 CCACTTCCATACATTTGGACTAATGT 59.397 38.462 14.54 14.54 45.42 2.71
151 152 7.122650 CCACTTCCATACATTTGGACTAATGTT 59.877 37.037 15.16 3.96 45.42 2.71
152 153 8.184192 CACTTCCATACATTTGGACTAATGTTC 58.816 37.037 15.16 0.00 45.42 3.18
153 154 8.109634 ACTTCCATACATTTGGACTAATGTTCT 58.890 33.333 15.16 3.92 45.42 3.01
154 155 7.864108 TCCATACATTTGGACTAATGTTCTG 57.136 36.000 15.16 12.89 44.18 3.02
155 156 7.402054 TCCATACATTTGGACTAATGTTCTGT 58.598 34.615 15.16 0.00 44.18 3.41
156 157 8.544622 TCCATACATTTGGACTAATGTTCTGTA 58.455 33.333 15.16 0.88 44.18 2.74
157 158 9.342308 CCATACATTTGGACTAATGTTCTGTAT 57.658 33.333 15.16 2.86 44.18 2.29
159 160 7.865706 ACATTTGGACTAATGTTCTGTATCC 57.134 36.000 6.35 0.00 44.18 2.59
160 161 7.402054 ACATTTGGACTAATGTTCTGTATCCA 58.598 34.615 6.35 0.00 44.18 3.41
161 162 8.055181 ACATTTGGACTAATGTTCTGTATCCAT 58.945 33.333 6.35 0.00 44.18 3.41
162 163 8.906867 CATTTGGACTAATGTTCTGTATCCATT 58.093 33.333 0.00 0.00 34.82 3.16
163 164 8.877864 TTTGGACTAATGTTCTGTATCCATTT 57.122 30.769 0.00 0.00 34.82 2.32
164 165 8.877864 TTGGACTAATGTTCTGTATCCATTTT 57.122 30.769 0.00 0.00 34.82 1.82
165 166 9.967451 TTGGACTAATGTTCTGTATCCATTTTA 57.033 29.630 0.00 0.00 34.82 1.52
166 167 9.613428 TGGACTAATGTTCTGTATCCATTTTAG 57.387 33.333 0.00 0.00 31.63 1.85
167 168 9.057089 GGACTAATGTTCTGTATCCATTTTAGG 57.943 37.037 0.00 0.00 31.63 2.69
168 169 9.614792 GACTAATGTTCTGTATCCATTTTAGGT 57.385 33.333 0.00 0.00 31.63 3.08
169 170 9.975218 ACTAATGTTCTGTATCCATTTTAGGTT 57.025 29.630 0.00 0.00 31.63 3.50
172 173 7.921786 TGTTCTGTATCCATTTTAGGTTCTG 57.078 36.000 0.00 0.00 0.00 3.02
173 174 7.685481 TGTTCTGTATCCATTTTAGGTTCTGA 58.315 34.615 0.00 0.00 0.00 3.27
174 175 8.160765 TGTTCTGTATCCATTTTAGGTTCTGAA 58.839 33.333 0.00 0.00 0.00 3.02
175 176 9.010029 GTTCTGTATCCATTTTAGGTTCTGAAA 57.990 33.333 0.00 0.00 0.00 2.69
176 177 9.581289 TTCTGTATCCATTTTAGGTTCTGAAAA 57.419 29.630 0.00 0.00 0.00 2.29
177 178 9.581289 TCTGTATCCATTTTAGGTTCTGAAAAA 57.419 29.630 0.00 0.00 0.00 1.94
185 186 9.815936 CATTTTAGGTTCTGAAAAATGAAATGC 57.184 29.630 15.30 0.00 46.32 3.56
186 187 7.636259 TTTAGGTTCTGAAAAATGAAATGCG 57.364 32.000 0.00 0.00 0.00 4.73
187 188 4.559153 AGGTTCTGAAAAATGAAATGCGG 58.441 39.130 0.00 0.00 0.00 5.69
188 189 4.039124 AGGTTCTGAAAAATGAAATGCGGT 59.961 37.500 0.00 0.00 0.00 5.68
189 190 5.242838 AGGTTCTGAAAAATGAAATGCGGTA 59.757 36.000 0.00 0.00 0.00 4.02
190 191 5.923684 GGTTCTGAAAAATGAAATGCGGTAA 59.076 36.000 0.00 0.00 0.00 2.85
191 192 6.422400 GGTTCTGAAAAATGAAATGCGGTAAA 59.578 34.615 0.00 0.00 0.00 2.01
192 193 7.042389 GGTTCTGAAAAATGAAATGCGGTAAAA 60.042 33.333 0.00 0.00 0.00 1.52
193 194 8.331742 GTTCTGAAAAATGAAATGCGGTAAAAA 58.668 29.630 0.00 0.00 0.00 1.94
194 195 8.071122 TCTGAAAAATGAAATGCGGTAAAAAG 57.929 30.769 0.00 0.00 0.00 2.27
195 196 7.708752 TCTGAAAAATGAAATGCGGTAAAAAGT 59.291 29.630 0.00 0.00 0.00 2.66
196 197 8.873215 TGAAAAATGAAATGCGGTAAAAAGTA 57.127 26.923 0.00 0.00 0.00 2.24
197 198 9.314321 TGAAAAATGAAATGCGGTAAAAAGTAA 57.686 25.926 0.00 0.00 0.00 2.24
200 201 6.944557 ATGAAATGCGGTAAAAAGTAAAGC 57.055 33.333 0.00 0.00 0.00 3.51
201 202 6.079424 TGAAATGCGGTAAAAAGTAAAGCT 57.921 33.333 0.00 0.00 0.00 3.74
202 203 6.508777 TGAAATGCGGTAAAAAGTAAAGCTT 58.491 32.000 0.00 0.00 39.52 3.74
203 204 7.649973 TGAAATGCGGTAAAAAGTAAAGCTTA 58.350 30.769 0.00 0.00 36.17 3.09
204 205 7.806014 TGAAATGCGGTAAAAAGTAAAGCTTAG 59.194 33.333 0.00 0.00 36.17 2.18
205 206 6.812879 ATGCGGTAAAAAGTAAAGCTTAGT 57.187 33.333 0.00 0.00 36.17 2.24
206 207 6.622833 TGCGGTAAAAAGTAAAGCTTAGTT 57.377 33.333 0.00 0.00 36.17 2.24
207 208 6.432107 TGCGGTAAAAAGTAAAGCTTAGTTG 58.568 36.000 0.00 0.00 36.17 3.16
208 209 5.341462 GCGGTAAAAAGTAAAGCTTAGTTGC 59.659 40.000 0.00 0.00 36.17 4.17
209 210 6.432107 CGGTAAAAAGTAAAGCTTAGTTGCA 58.568 36.000 0.00 0.00 36.17 4.08
210 211 6.577427 CGGTAAAAAGTAAAGCTTAGTTGCAG 59.423 38.462 0.00 0.00 36.17 4.41
211 212 6.362551 GGTAAAAAGTAAAGCTTAGTTGCAGC 59.637 38.462 0.00 0.00 36.17 5.25
212 213 5.514274 AAAAGTAAAGCTTAGTTGCAGCA 57.486 34.783 0.00 0.00 39.99 4.41
213 214 5.514274 AAAGTAAAGCTTAGTTGCAGCAA 57.486 34.783 2.83 2.83 39.99 3.91
214 215 4.489679 AGTAAAGCTTAGTTGCAGCAAC 57.510 40.909 28.02 28.02 43.83 4.17
215 216 3.882888 AGTAAAGCTTAGTTGCAGCAACA 59.117 39.130 34.38 20.24 45.66 3.33
216 217 4.520492 AGTAAAGCTTAGTTGCAGCAACAT 59.480 37.500 34.38 22.89 45.66 2.71
217 218 3.293311 AAGCTTAGTTGCAGCAACATG 57.707 42.857 34.38 24.42 45.66 3.21
218 219 2.233271 AGCTTAGTTGCAGCAACATGT 58.767 42.857 34.38 19.77 45.66 3.21
219 220 2.624838 AGCTTAGTTGCAGCAACATGTT 59.375 40.909 34.38 19.44 45.66 2.71
220 221 3.068590 AGCTTAGTTGCAGCAACATGTTT 59.931 39.130 34.38 19.10 45.66 2.83
221 222 4.278170 AGCTTAGTTGCAGCAACATGTTTA 59.722 37.500 34.38 18.14 45.66 2.01
222 223 4.618489 GCTTAGTTGCAGCAACATGTTTAG 59.382 41.667 34.38 22.08 45.66 1.85
223 224 5.562696 GCTTAGTTGCAGCAACATGTTTAGA 60.563 40.000 34.38 13.19 45.66 2.10
224 225 4.228912 AGTTGCAGCAACATGTTTAGAC 57.771 40.909 34.38 9.51 45.66 2.59
225 226 3.885297 AGTTGCAGCAACATGTTTAGACT 59.115 39.130 34.38 11.65 45.66 3.24
226 227 3.902261 TGCAGCAACATGTTTAGACTG 57.098 42.857 8.77 14.39 0.00 3.51
227 228 2.030893 TGCAGCAACATGTTTAGACTGC 60.031 45.455 28.64 28.64 46.98 4.40
228 229 2.030893 GCAGCAACATGTTTAGACTGCA 60.031 45.455 29.52 0.00 46.28 4.41
229 230 3.550639 GCAGCAACATGTTTAGACTGCAA 60.551 43.478 29.52 0.00 46.28 4.08
230 231 4.801891 CAGCAACATGTTTAGACTGCAAT 58.198 39.130 17.63 0.00 32.21 3.56
231 232 4.619760 CAGCAACATGTTTAGACTGCAATG 59.380 41.667 17.63 6.72 32.21 2.82
232 233 4.520111 AGCAACATGTTTAGACTGCAATGA 59.480 37.500 17.63 0.00 32.21 2.57
233 234 5.009911 AGCAACATGTTTAGACTGCAATGAA 59.990 36.000 17.63 0.00 32.21 2.57
234 235 5.865552 GCAACATGTTTAGACTGCAATGAAT 59.134 36.000 8.77 0.00 0.00 2.57
235 236 7.028962 GCAACATGTTTAGACTGCAATGAATA 58.971 34.615 8.77 0.00 0.00 1.75
236 237 7.219535 GCAACATGTTTAGACTGCAATGAATAG 59.780 37.037 8.77 0.00 0.00 1.73
237 238 7.325660 ACATGTTTAGACTGCAATGAATAGG 57.674 36.000 0.00 0.00 0.00 2.57
238 239 6.319658 ACATGTTTAGACTGCAATGAATAGGG 59.680 38.462 0.00 0.00 0.00 3.53
239 240 5.192927 TGTTTAGACTGCAATGAATAGGGG 58.807 41.667 0.00 0.00 0.00 4.79
240 241 5.193679 GTTTAGACTGCAATGAATAGGGGT 58.806 41.667 0.00 0.00 0.00 4.95
241 242 5.450818 TTAGACTGCAATGAATAGGGGTT 57.549 39.130 0.00 0.00 0.00 4.11
242 243 6.569127 TTAGACTGCAATGAATAGGGGTTA 57.431 37.500 0.00 0.00 0.00 2.85
243 244 5.653255 AGACTGCAATGAATAGGGGTTAT 57.347 39.130 0.00 0.00 0.00 1.89
244 245 6.018433 AGACTGCAATGAATAGGGGTTATT 57.982 37.500 0.00 0.00 34.65 1.40
245 246 5.829924 AGACTGCAATGAATAGGGGTTATTG 59.170 40.000 0.00 0.00 32.09 1.90
246 247 5.518865 ACTGCAATGAATAGGGGTTATTGT 58.481 37.500 0.00 0.00 32.09 2.71
247 248 5.957774 ACTGCAATGAATAGGGGTTATTGTT 59.042 36.000 0.00 0.00 32.09 2.83
248 249 6.127366 ACTGCAATGAATAGGGGTTATTGTTG 60.127 38.462 0.00 0.00 32.09 3.33
249 250 5.954752 TGCAATGAATAGGGGTTATTGTTGA 59.045 36.000 0.00 0.00 32.09 3.18
250 251 6.610830 TGCAATGAATAGGGGTTATTGTTGAT 59.389 34.615 0.00 0.00 32.09 2.57
251 252 7.147976 GCAATGAATAGGGGTTATTGTTGATC 58.852 38.462 0.00 0.00 32.09 2.92
252 253 7.201902 GCAATGAATAGGGGTTATTGTTGATCA 60.202 37.037 0.00 0.00 32.09 2.92
253 254 8.355169 CAATGAATAGGGGTTATTGTTGATCAG 58.645 37.037 0.00 0.00 32.09 2.90
254 255 5.827797 TGAATAGGGGTTATTGTTGATCAGC 59.172 40.000 2.05 2.05 32.09 4.26
255 256 3.018423 AGGGGTTATTGTTGATCAGCC 57.982 47.619 7.13 0.00 0.00 4.85
256 257 2.582636 AGGGGTTATTGTTGATCAGCCT 59.417 45.455 7.13 0.00 31.56 4.58
257 258 2.689983 GGGGTTATTGTTGATCAGCCTG 59.310 50.000 7.13 0.00 31.56 4.85
258 259 3.356290 GGGTTATTGTTGATCAGCCTGT 58.644 45.455 7.13 0.00 0.00 4.00
259 260 4.523083 GGGTTATTGTTGATCAGCCTGTA 58.477 43.478 7.13 0.00 0.00 2.74
260 261 4.947388 GGGTTATTGTTGATCAGCCTGTAA 59.053 41.667 7.13 1.45 0.00 2.41
261 262 5.066505 GGGTTATTGTTGATCAGCCTGTAAG 59.933 44.000 7.13 0.00 0.00 2.34
282 283 9.005777 TGTAAGGTCAATAAACAATGTTAGTCC 57.994 33.333 0.00 0.00 0.00 3.85
283 284 9.005777 GTAAGGTCAATAAACAATGTTAGTCCA 57.994 33.333 0.00 0.00 0.00 4.02
284 285 8.650143 AAGGTCAATAAACAATGTTAGTCCAT 57.350 30.769 0.00 0.00 0.00 3.41
285 286 9.747898 AAGGTCAATAAACAATGTTAGTCCATA 57.252 29.630 0.00 0.00 0.00 2.74
286 287 9.747898 AGGTCAATAAACAATGTTAGTCCATAA 57.252 29.630 0.00 0.00 0.00 1.90
336 337 8.633075 ATGAAAGATATATTTTTGCACGGTTG 57.367 30.769 5.99 0.00 0.00 3.77
337 338 7.821652 TGAAAGATATATTTTTGCACGGTTGA 58.178 30.769 5.99 0.00 0.00 3.18
338 339 8.465999 TGAAAGATATATTTTTGCACGGTTGAT 58.534 29.630 5.99 0.00 0.00 2.57
339 340 9.944663 GAAAGATATATTTTTGCACGGTTGATA 57.055 29.630 5.99 0.00 0.00 2.15
342 343 9.897744 AGATATATTTTTGCACGGTTGATAATG 57.102 29.630 0.00 0.00 0.00 1.90
343 344 9.891828 GATATATTTTTGCACGGTTGATAATGA 57.108 29.630 0.00 0.00 0.00 2.57
345 346 6.704512 ATTTTTGCACGGTTGATAATGAAC 57.295 33.333 0.00 0.00 0.00 3.18
346 347 3.840890 TTGCACGGTTGATAATGAACC 57.159 42.857 0.00 0.00 39.71 3.62
347 348 3.066291 TGCACGGTTGATAATGAACCT 57.934 42.857 4.13 0.00 40.77 3.50
348 349 3.006940 TGCACGGTTGATAATGAACCTC 58.993 45.455 4.13 0.00 40.77 3.85
349 350 3.270877 GCACGGTTGATAATGAACCTCT 58.729 45.455 4.13 0.00 40.77 3.69
350 351 4.081365 TGCACGGTTGATAATGAACCTCTA 60.081 41.667 4.13 0.00 40.77 2.43
351 352 4.873827 GCACGGTTGATAATGAACCTCTAA 59.126 41.667 4.13 0.00 40.77 2.10
352 353 5.353123 GCACGGTTGATAATGAACCTCTAAA 59.647 40.000 4.13 0.00 40.77 1.85
353 354 6.128117 GCACGGTTGATAATGAACCTCTAAAA 60.128 38.462 4.13 0.00 40.77 1.52
354 355 7.415206 GCACGGTTGATAATGAACCTCTAAAAT 60.415 37.037 4.13 0.00 40.77 1.82
355 356 9.104965 CACGGTTGATAATGAACCTCTAAAATA 57.895 33.333 4.13 0.00 40.77 1.40
356 357 9.106070 ACGGTTGATAATGAACCTCTAAAATAC 57.894 33.333 4.13 0.00 40.77 1.89
357 358 9.326413 CGGTTGATAATGAACCTCTAAAATACT 57.674 33.333 4.13 0.00 40.77 2.12
366 367 7.723324 TGAACCTCTAAAATACTTAGATCCCG 58.277 38.462 0.00 0.00 31.36 5.14
367 368 6.667558 ACCTCTAAAATACTTAGATCCCGG 57.332 41.667 0.00 0.00 31.36 5.73
368 369 6.141790 ACCTCTAAAATACTTAGATCCCGGT 58.858 40.000 0.00 0.00 31.36 5.28
369 370 6.041751 ACCTCTAAAATACTTAGATCCCGGTG 59.958 42.308 0.00 0.00 29.87 4.94
370 371 5.850614 TCTAAAATACTTAGATCCCGGTGC 58.149 41.667 0.00 0.00 0.00 5.01
371 372 4.497291 AAAATACTTAGATCCCGGTGCA 57.503 40.909 0.00 0.00 0.00 4.57
372 373 4.497291 AAATACTTAGATCCCGGTGCAA 57.503 40.909 0.00 0.00 0.00 4.08
373 374 2.973694 TACTTAGATCCCGGTGCAAC 57.026 50.000 0.00 0.00 0.00 4.17
374 375 0.981183 ACTTAGATCCCGGTGCAACA 59.019 50.000 0.98 0.00 39.98 3.33
375 376 1.338769 ACTTAGATCCCGGTGCAACAC 60.339 52.381 0.98 0.00 39.98 3.32
376 377 0.687920 TTAGATCCCGGTGCAACACA 59.312 50.000 0.98 0.00 39.98 3.72
384 385 2.727544 GTGCAACACACGGGCAAT 59.272 55.556 0.00 0.00 40.07 3.56
385 386 1.067250 GTGCAACACACGGGCAATT 59.933 52.632 0.00 0.00 40.07 2.32
386 387 0.312416 GTGCAACACACGGGCAATTA 59.688 50.000 0.00 0.00 40.07 1.40
387 388 0.312416 TGCAACACACGGGCAATTAC 59.688 50.000 0.00 0.00 34.05 1.89
388 389 0.388006 GCAACACACGGGCAATTACC 60.388 55.000 0.00 0.00 0.00 2.85
389 390 1.243902 CAACACACGGGCAATTACCT 58.756 50.000 0.00 0.00 0.00 3.08
390 391 2.428491 CAACACACGGGCAATTACCTA 58.572 47.619 0.00 0.00 0.00 3.08
391 392 2.396590 ACACACGGGCAATTACCTAG 57.603 50.000 0.00 0.00 0.00 3.02
392 393 1.626825 ACACACGGGCAATTACCTAGT 59.373 47.619 0.00 0.00 0.00 2.57
393 394 2.833338 ACACACGGGCAATTACCTAGTA 59.167 45.455 0.00 0.00 0.00 1.82
394 395 3.261390 ACACACGGGCAATTACCTAGTAA 59.739 43.478 0.00 0.00 32.36 2.24
395 396 4.080751 ACACACGGGCAATTACCTAGTAAT 60.081 41.667 0.00 0.00 39.98 1.89
396 397 5.129155 ACACACGGGCAATTACCTAGTAATA 59.871 40.000 0.65 0.00 37.69 0.98
397 398 6.050432 CACACGGGCAATTACCTAGTAATAA 58.950 40.000 0.65 0.00 37.69 1.40
398 399 6.539464 CACACGGGCAATTACCTAGTAATAAA 59.461 38.462 0.65 0.00 37.69 1.40
399 400 7.066043 CACACGGGCAATTACCTAGTAATAAAA 59.934 37.037 0.65 0.00 37.69 1.52
400 401 7.611079 ACACGGGCAATTACCTAGTAATAAAAA 59.389 33.333 0.65 0.00 37.69 1.94
401 402 8.626526 CACGGGCAATTACCTAGTAATAAAAAT 58.373 33.333 0.65 0.00 37.69 1.82
402 403 8.626526 ACGGGCAATTACCTAGTAATAAAAATG 58.373 33.333 0.65 0.00 37.69 2.32
403 404 8.626526 CGGGCAATTACCTAGTAATAAAAATGT 58.373 33.333 0.65 0.00 37.69 2.71
404 405 9.744468 GGGCAATTACCTAGTAATAAAAATGTG 57.256 33.333 0.65 0.00 37.69 3.21
421 422 8.567285 AAAAATGTGTACTATTCTCCTTCAGG 57.433 34.615 0.00 0.00 0.00 3.86
422 423 4.737855 TGTGTACTATTCTCCTTCAGGC 57.262 45.455 0.00 0.00 34.44 4.85
423 424 3.451178 TGTGTACTATTCTCCTTCAGGCC 59.549 47.826 0.00 0.00 34.44 5.19
424 425 2.693591 TGTACTATTCTCCTTCAGGCCG 59.306 50.000 0.00 0.00 34.44 6.13
425 426 1.123928 ACTATTCTCCTTCAGGCCGG 58.876 55.000 0.00 0.00 34.44 6.13
426 427 0.394565 CTATTCTCCTTCAGGCCGGG 59.605 60.000 2.18 1.75 34.44 5.73
427 428 0.031515 TATTCTCCTTCAGGCCGGGA 60.032 55.000 2.18 6.35 34.44 5.14
428 429 0.695803 ATTCTCCTTCAGGCCGGGAT 60.696 55.000 2.18 0.00 34.44 3.85
429 430 1.626356 TTCTCCTTCAGGCCGGGATG 61.626 60.000 2.18 4.79 34.44 3.51
430 431 3.764160 CTCCTTCAGGCCGGGATGC 62.764 68.421 2.18 0.00 34.44 3.91
431 432 4.113815 CCTTCAGGCCGGGATGCA 62.114 66.667 2.18 0.00 0.00 3.96
432 433 2.194056 CTTCAGGCCGGGATGCAT 59.806 61.111 2.18 0.00 0.00 3.96
433 434 1.895707 CTTCAGGCCGGGATGCATC 60.896 63.158 18.81 18.81 0.00 3.91
434 435 2.613660 CTTCAGGCCGGGATGCATCA 62.614 60.000 27.25 1.86 0.00 3.07
435 436 2.891941 TTCAGGCCGGGATGCATCAC 62.892 60.000 27.25 23.62 0.00 3.06
444 445 2.838736 GGGATGCATCACGACATTACT 58.161 47.619 27.25 0.00 0.00 2.24
445 446 2.802816 GGGATGCATCACGACATTACTC 59.197 50.000 27.25 5.88 0.00 2.59
446 447 2.802816 GGATGCATCACGACATTACTCC 59.197 50.000 27.25 3.63 0.00 3.85
447 448 3.457234 GATGCATCACGACATTACTCCA 58.543 45.455 21.92 0.00 0.00 3.86
448 449 2.616960 TGCATCACGACATTACTCCAC 58.383 47.619 0.00 0.00 0.00 4.02
449 450 2.028567 TGCATCACGACATTACTCCACA 60.029 45.455 0.00 0.00 0.00 4.17
450 451 2.348666 GCATCACGACATTACTCCACAC 59.651 50.000 0.00 0.00 0.00 3.82
451 452 3.584834 CATCACGACATTACTCCACACA 58.415 45.455 0.00 0.00 0.00 3.72
452 453 3.297830 TCACGACATTACTCCACACAG 57.702 47.619 0.00 0.00 0.00 3.66
453 454 2.626266 TCACGACATTACTCCACACAGT 59.374 45.455 0.00 0.00 0.00 3.55
454 455 3.069016 TCACGACATTACTCCACACAGTT 59.931 43.478 0.00 0.00 0.00 3.16
455 456 3.428870 CACGACATTACTCCACACAGTTC 59.571 47.826 0.00 0.00 0.00 3.01
456 457 2.661675 CGACATTACTCCACACAGTTCG 59.338 50.000 0.00 0.00 0.00 3.95
457 458 2.412089 GACATTACTCCACACAGTTCGC 59.588 50.000 0.00 0.00 0.00 4.70
458 459 1.732259 CATTACTCCACACAGTTCGCC 59.268 52.381 0.00 0.00 0.00 5.54
459 460 1.045407 TTACTCCACACAGTTCGCCT 58.955 50.000 0.00 0.00 0.00 5.52
883 884 1.726791 CCACCGTCGTCATCTCAAAAG 59.273 52.381 0.00 0.00 0.00 2.27
914 915 3.132289 CCCTTTGTATTACGCCTCTCTCA 59.868 47.826 0.00 0.00 0.00 3.27
925 926 1.339151 GCCTCTCTCAACCCATTTCGT 60.339 52.381 0.00 0.00 0.00 3.85
1033 1038 4.144727 GCGGGGAGGAGGGAGAGA 62.145 72.222 0.00 0.00 0.00 3.10
1470 1475 1.226888 GGCGTACCGTGTCATCTCC 60.227 63.158 0.00 0.00 0.00 3.71
1638 1643 0.688087 GGAGGTTCGACCAGGAGGAT 60.688 60.000 0.00 0.00 41.95 3.24
1643 1648 2.035632 GTTCGACCAGGAGGATGAGAT 58.964 52.381 0.00 0.00 38.69 2.75
1657 1662 3.181475 GGATGAGATTGTCGACCTGCTTA 60.181 47.826 14.12 4.44 0.00 3.09
1706 1711 7.451731 AGGATCCCAATTTCAAGTATGACTA 57.548 36.000 8.55 0.00 34.61 2.59
1719 1724 1.710013 ATGACTACACCAAAGACGCG 58.290 50.000 3.53 3.53 0.00 6.01
1721 1726 1.335597 TGACTACACCAAAGACGCGAG 60.336 52.381 15.93 0.00 0.00 5.03
1729 1734 2.607892 AAAGACGCGAGCAACTGCC 61.608 57.895 15.93 0.00 43.38 4.85
1740 1745 3.624861 CGAGCAACTGCCTTGAGAATATT 59.375 43.478 0.00 0.00 43.38 1.28
1797 1802 4.917385 AGGTATTTGGTGATGCTGTTGTA 58.083 39.130 0.00 0.00 0.00 2.41
1963 1968 2.884639 ACCATTGAGGGTGAAAAACTCG 59.115 45.455 0.00 0.00 43.89 4.18
1964 1969 2.884639 CCATTGAGGGTGAAAAACTCGT 59.115 45.455 0.00 0.00 32.83 4.18
1965 1970 3.304659 CCATTGAGGGTGAAAAACTCGTG 60.305 47.826 0.00 0.00 32.83 4.35
1991 2000 5.771666 TCCTCTTTACAACCGTTCTCTTAGA 59.228 40.000 0.00 0.00 0.00 2.10
2000 2009 6.479331 ACAACCGTTCTCTTAGAAAGTCTTTC 59.521 38.462 16.24 16.24 35.75 2.62
2106 2115 4.021981 GCAGTTCAAAAGGAGCTACCAAAT 60.022 41.667 0.00 0.00 42.04 2.32
2141 2150 2.158623 TCTCCATCGGGCTTATTGCATT 60.159 45.455 0.00 0.00 45.15 3.56
2142 2151 3.072330 TCTCCATCGGGCTTATTGCATTA 59.928 43.478 0.00 0.00 45.15 1.90
2148 2157 3.630312 TCGGGCTTATTGCATTAAGGTTC 59.370 43.478 23.12 11.22 45.15 3.62
2215 2224 4.142004 GGGAAAACGAGTTCTATAGGCTGA 60.142 45.833 0.00 0.00 0.00 4.26
2357 2366 5.359756 GCCATATTTGGGAGGACATTTTTC 58.640 41.667 4.23 0.00 43.84 2.29
2441 2450 1.708993 GCCCAGACATGCCTATCCCA 61.709 60.000 0.00 0.00 0.00 4.37
2442 2451 0.109342 CCCAGACATGCCTATCCCAC 59.891 60.000 0.00 0.00 0.00 4.61
2491 2501 6.007076 TCTCATGTTTACCAAATGCCAAGTA 58.993 36.000 0.00 0.00 0.00 2.24
2532 2542 6.993079 AGAAAAATTGTGATACCCTTTCACC 58.007 36.000 1.73 0.00 42.25 4.02
2688 2701 4.085107 GGAACAACAAATAGCGCAACAAAG 60.085 41.667 11.47 0.00 0.00 2.77
2691 2704 3.369546 ACAAATAGCGCAACAAAGCTT 57.630 38.095 11.47 0.00 44.15 3.74
2755 2768 2.133742 CTGCAGCTGTTTTCACCCCG 62.134 60.000 16.64 0.00 0.00 5.73
2797 2810 1.138661 GATGAGCTTGTAGAGGCTGCT 59.861 52.381 0.00 0.00 39.05 4.24
3036 3049 1.886222 GCATAGAACCCAGCCACAACA 60.886 52.381 0.00 0.00 0.00 3.33
3160 3173 1.043116 AGGAACGGATGGATCTCGCA 61.043 55.000 0.00 0.00 0.00 5.10
3277 3293 1.749258 GGTAGCTTTCCAAGGGGCG 60.749 63.158 0.00 0.00 0.00 6.13
3296 3312 2.350772 GCGACCATTTTGAACTGTCCAG 60.351 50.000 0.00 0.00 0.00 3.86
3308 3324 3.127425 ACTGTCCAGCCAGTTCTTTAC 57.873 47.619 0.00 0.00 42.99 2.01
3418 3434 1.969923 CTCAGTCAAATTTTGGGGCCA 59.030 47.619 4.39 0.00 0.00 5.36
3428 3444 4.541250 ATTTTGGGGCCATTAGATCTGA 57.459 40.909 4.39 0.00 0.00 3.27
3431 3447 1.776667 TGGGGCCATTAGATCTGAAGG 59.223 52.381 4.39 4.77 0.00 3.46
3471 3487 4.393062 TGATTCTGAAAGCATCCGTCTTTC 59.607 41.667 8.15 8.15 45.78 2.62
3487 3503 4.675933 CGTCTTTCTTGGTTTCGGGTTTTT 60.676 41.667 0.00 0.00 0.00 1.94
3488 3504 5.448904 CGTCTTTCTTGGTTTCGGGTTTTTA 60.449 40.000 0.00 0.00 0.00 1.52
3489 3505 6.509656 GTCTTTCTTGGTTTCGGGTTTTTAT 58.490 36.000 0.00 0.00 0.00 1.40
3490 3506 7.520292 CGTCTTTCTTGGTTTCGGGTTTTTATA 60.520 37.037 0.00 0.00 0.00 0.98
3492 3508 8.862085 TCTTTCTTGGTTTCGGGTTTTTATATT 58.138 29.630 0.00 0.00 0.00 1.28
3493 3509 9.135843 CTTTCTTGGTTTCGGGTTTTTATATTC 57.864 33.333 0.00 0.00 0.00 1.75
3494 3510 6.844254 TCTTGGTTTCGGGTTTTTATATTCG 58.156 36.000 0.00 0.00 0.00 3.34
3495 3511 6.430616 TCTTGGTTTCGGGTTTTTATATTCGT 59.569 34.615 0.00 0.00 0.00 3.85
3496 3512 5.940595 TGGTTTCGGGTTTTTATATTCGTG 58.059 37.500 0.00 0.00 0.00 4.35
3497 3513 5.106237 TGGTTTCGGGTTTTTATATTCGTGG 60.106 40.000 0.00 0.00 0.00 4.94
3699 3813 6.825721 TCTTCTCTTTCTGGATTTTCCTATGC 59.174 38.462 0.00 0.00 37.46 3.14
3742 3897 2.367512 GTCCCCAGCCCAGGAGAT 60.368 66.667 0.00 0.00 31.17 2.75
3767 3924 1.524482 GAGCTGCTAGTTGGGGGAG 59.476 63.158 0.15 0.00 0.00 4.30
3822 3982 2.408241 GCAGCGAGGTAGTCTCCGT 61.408 63.158 0.00 0.00 39.30 4.69
3862 4027 3.644966 AAATCAGCCGGTTTGGATCTA 57.355 42.857 1.90 0.00 42.00 1.98
3914 4079 1.021968 GGTGTGGTTTGTGTGGAGAC 58.978 55.000 0.00 0.00 0.00 3.36
3956 4122 2.540383 AGGGAGCTGTTCTGTACATGA 58.460 47.619 0.00 0.00 35.85 3.07
3989 4155 2.516227 AGAGTAGCCAGCTCTGTGTA 57.484 50.000 0.00 0.00 41.32 2.90
4004 4170 7.598118 CAGCTCTGTGTATTCTCATCGATTTAT 59.402 37.037 0.00 0.00 0.00 1.40
4111 4277 5.070001 CCCAACCTAGTTTTCTTGATGTGA 58.930 41.667 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.004734 AGCGAAAATCCCTTCAACACAAG 59.995 43.478 0.00 0.00 0.00 3.16
1 2 2.955660 AGCGAAAATCCCTTCAACACAA 59.044 40.909 0.00 0.00 0.00 3.33
2 3 2.582052 AGCGAAAATCCCTTCAACACA 58.418 42.857 0.00 0.00 0.00 3.72
3 4 3.308530 CAAGCGAAAATCCCTTCAACAC 58.691 45.455 0.00 0.00 0.00 3.32
4 5 2.295909 CCAAGCGAAAATCCCTTCAACA 59.704 45.455 0.00 0.00 0.00 3.33
5 6 2.296190 ACCAAGCGAAAATCCCTTCAAC 59.704 45.455 0.00 0.00 0.00 3.18
6 7 2.556622 GACCAAGCGAAAATCCCTTCAA 59.443 45.455 0.00 0.00 0.00 2.69
7 8 2.159382 GACCAAGCGAAAATCCCTTCA 58.841 47.619 0.00 0.00 0.00 3.02
8 9 2.159382 TGACCAAGCGAAAATCCCTTC 58.841 47.619 0.00 0.00 0.00 3.46
9 10 2.162681 CTGACCAAGCGAAAATCCCTT 58.837 47.619 0.00 0.00 0.00 3.95
10 11 1.351017 TCTGACCAAGCGAAAATCCCT 59.649 47.619 0.00 0.00 0.00 4.20
11 12 1.468914 GTCTGACCAAGCGAAAATCCC 59.531 52.381 0.00 0.00 0.00 3.85
12 13 2.416893 GAGTCTGACCAAGCGAAAATCC 59.583 50.000 3.76 0.00 0.00 3.01
13 14 3.330267 AGAGTCTGACCAAGCGAAAATC 58.670 45.455 3.76 0.00 0.00 2.17
14 15 3.409026 AGAGTCTGACCAAGCGAAAAT 57.591 42.857 3.76 0.00 0.00 1.82
15 16 2.910688 AGAGTCTGACCAAGCGAAAA 57.089 45.000 3.76 0.00 0.00 2.29
16 17 2.910688 AAGAGTCTGACCAAGCGAAA 57.089 45.000 3.76 0.00 0.00 3.46
17 18 2.029290 GGTAAGAGTCTGACCAAGCGAA 60.029 50.000 20.62 0.00 33.16 4.70
18 19 1.544691 GGTAAGAGTCTGACCAAGCGA 59.455 52.381 20.62 0.00 33.16 4.93
19 20 1.546476 AGGTAAGAGTCTGACCAAGCG 59.454 52.381 26.14 0.00 35.56 4.68
20 21 3.686916 AAGGTAAGAGTCTGACCAAGC 57.313 47.619 26.14 1.77 35.56 4.01
21 22 9.892130 ATAATAAAAGGTAAGAGTCTGACCAAG 57.108 33.333 26.14 0.00 35.56 3.61
72 73 1.065126 AGTTTCATCCCCTGCTACTGC 60.065 52.381 0.00 0.00 40.20 4.40
73 74 4.696479 ATAGTTTCATCCCCTGCTACTG 57.304 45.455 0.00 0.00 0.00 2.74
74 75 6.824958 TTAATAGTTTCATCCCCTGCTACT 57.175 37.500 0.00 0.00 0.00 2.57
75 76 7.875327 TTTTAATAGTTTCATCCCCTGCTAC 57.125 36.000 0.00 0.00 0.00 3.58
120 121 6.739331 TCCAAATGTATGGAAGTGGTTTTT 57.261 33.333 0.00 0.00 46.36 1.94
130 131 7.402054 ACAGAACATTAGTCCAAATGTATGGA 58.598 34.615 14.31 0.16 46.72 3.41
131 132 7.630242 ACAGAACATTAGTCCAAATGTATGG 57.370 36.000 14.31 0.00 46.72 2.74
133 134 9.561069 GGATACAGAACATTAGTCCAAATGTAT 57.439 33.333 2.89 0.00 46.72 2.29
134 135 8.544622 TGGATACAGAACATTAGTCCAAATGTA 58.455 33.333 2.89 0.00 45.05 2.29
135 136 7.402054 TGGATACAGAACATTAGTCCAAATGT 58.598 34.615 0.00 0.00 46.57 2.71
136 137 7.864108 TGGATACAGAACATTAGTCCAAATG 57.136 36.000 0.00 0.00 46.17 2.32
159 160 9.815936 GCATTTCATTTTTCAGAACCTAAAATG 57.184 29.630 10.15 10.15 44.59 2.32
160 161 8.711457 CGCATTTCATTTTTCAGAACCTAAAAT 58.289 29.630 0.00 0.00 33.12 1.82
161 162 7.170658 CCGCATTTCATTTTTCAGAACCTAAAA 59.829 33.333 0.00 0.00 0.00 1.52
162 163 6.644592 CCGCATTTCATTTTTCAGAACCTAAA 59.355 34.615 0.00 0.00 0.00 1.85
163 164 6.155827 CCGCATTTCATTTTTCAGAACCTAA 58.844 36.000 0.00 0.00 0.00 2.69
164 165 5.242838 ACCGCATTTCATTTTTCAGAACCTA 59.757 36.000 0.00 0.00 0.00 3.08
165 166 4.039124 ACCGCATTTCATTTTTCAGAACCT 59.961 37.500 0.00 0.00 0.00 3.50
166 167 4.306600 ACCGCATTTCATTTTTCAGAACC 58.693 39.130 0.00 0.00 0.00 3.62
167 168 7.401484 TTTACCGCATTTCATTTTTCAGAAC 57.599 32.000 0.00 0.00 0.00 3.01
168 169 8.425577 TTTTTACCGCATTTCATTTTTCAGAA 57.574 26.923 0.00 0.00 0.00 3.02
169 170 7.708752 ACTTTTTACCGCATTTCATTTTTCAGA 59.291 29.630 0.00 0.00 0.00 3.27
170 171 7.850501 ACTTTTTACCGCATTTCATTTTTCAG 58.149 30.769 0.00 0.00 0.00 3.02
171 172 7.778470 ACTTTTTACCGCATTTCATTTTTCA 57.222 28.000 0.00 0.00 0.00 2.69
174 175 8.279800 GCTTTACTTTTTACCGCATTTCATTTT 58.720 29.630 0.00 0.00 0.00 1.82
175 176 7.655732 AGCTTTACTTTTTACCGCATTTCATTT 59.344 29.630 0.00 0.00 0.00 2.32
176 177 7.151976 AGCTTTACTTTTTACCGCATTTCATT 58.848 30.769 0.00 0.00 0.00 2.57
177 178 6.687604 AGCTTTACTTTTTACCGCATTTCAT 58.312 32.000 0.00 0.00 0.00 2.57
178 179 6.079424 AGCTTTACTTTTTACCGCATTTCA 57.921 33.333 0.00 0.00 0.00 2.69
179 180 7.806487 ACTAAGCTTTACTTTTTACCGCATTTC 59.194 33.333 3.20 0.00 39.97 2.17
180 181 7.654568 ACTAAGCTTTACTTTTTACCGCATTT 58.345 30.769 3.20 0.00 39.97 2.32
181 182 7.210718 ACTAAGCTTTACTTTTTACCGCATT 57.789 32.000 3.20 0.00 39.97 3.56
182 183 6.812879 ACTAAGCTTTACTTTTTACCGCAT 57.187 33.333 3.20 0.00 39.97 4.73
183 184 6.432107 CAACTAAGCTTTACTTTTTACCGCA 58.568 36.000 3.20 0.00 39.97 5.69
184 185 5.341462 GCAACTAAGCTTTACTTTTTACCGC 59.659 40.000 3.20 0.00 39.97 5.68
185 186 6.432107 TGCAACTAAGCTTTACTTTTTACCG 58.568 36.000 3.20 0.00 39.97 4.02
186 187 6.362551 GCTGCAACTAAGCTTTACTTTTTACC 59.637 38.462 3.20 0.00 39.97 2.85
187 188 6.915843 TGCTGCAACTAAGCTTTACTTTTTAC 59.084 34.615 3.20 0.00 41.42 2.01
188 189 7.033530 TGCTGCAACTAAGCTTTACTTTTTA 57.966 32.000 3.20 0.00 41.42 1.52
189 190 5.901552 TGCTGCAACTAAGCTTTACTTTTT 58.098 33.333 3.20 0.00 41.42 1.94
190 191 5.514274 TGCTGCAACTAAGCTTTACTTTT 57.486 34.783 3.20 0.00 41.42 2.27
191 192 5.163561 TGTTGCTGCAACTAAGCTTTACTTT 60.164 36.000 36.41 0.00 43.85 2.66
192 193 4.338118 TGTTGCTGCAACTAAGCTTTACTT 59.662 37.500 36.41 0.00 43.85 2.24
193 194 3.882888 TGTTGCTGCAACTAAGCTTTACT 59.117 39.130 36.41 0.00 43.85 2.24
194 195 4.223320 TGTTGCTGCAACTAAGCTTTAC 57.777 40.909 36.41 15.22 43.85 2.01
195 196 4.278170 ACATGTTGCTGCAACTAAGCTTTA 59.722 37.500 36.41 20.13 43.85 1.85
196 197 3.068590 ACATGTTGCTGCAACTAAGCTTT 59.931 39.130 36.41 16.95 43.85 3.51
197 198 2.624838 ACATGTTGCTGCAACTAAGCTT 59.375 40.909 36.41 17.82 43.85 3.74
198 199 2.233271 ACATGTTGCTGCAACTAAGCT 58.767 42.857 36.41 18.58 43.85 3.74
199 200 2.712057 ACATGTTGCTGCAACTAAGC 57.288 45.000 36.41 17.65 43.85 3.09
200 201 5.853282 GTCTAAACATGTTGCTGCAACTAAG 59.147 40.000 36.41 28.38 43.85 2.18
201 202 5.530915 AGTCTAAACATGTTGCTGCAACTAA 59.469 36.000 36.41 23.33 43.85 2.24
202 203 5.049474 CAGTCTAAACATGTTGCTGCAACTA 60.049 40.000 36.41 25.99 43.85 2.24
203 204 3.885297 AGTCTAAACATGTTGCTGCAACT 59.115 39.130 36.41 23.14 43.85 3.16
204 205 3.976942 CAGTCTAAACATGTTGCTGCAAC 59.023 43.478 32.58 32.58 43.78 4.17
205 206 3.550639 GCAGTCTAAACATGTTGCTGCAA 60.551 43.478 30.77 11.69 44.81 4.08
206 207 2.030893 GCAGTCTAAACATGTTGCTGCA 60.031 45.455 30.77 0.00 44.81 4.41
207 208 2.030893 TGCAGTCTAAACATGTTGCTGC 60.031 45.455 29.97 29.97 45.42 5.25
208 209 3.902261 TGCAGTCTAAACATGTTGCTG 57.098 42.857 12.82 17.30 33.00 4.41
209 210 4.520111 TCATTGCAGTCTAAACATGTTGCT 59.480 37.500 12.82 5.70 33.00 3.91
210 211 4.797471 TCATTGCAGTCTAAACATGTTGC 58.203 39.130 12.82 11.38 0.00 4.17
211 212 7.699391 CCTATTCATTGCAGTCTAAACATGTTG 59.301 37.037 12.82 0.12 0.00 3.33
212 213 7.148018 CCCTATTCATTGCAGTCTAAACATGTT 60.148 37.037 4.92 4.92 0.00 2.71
213 214 6.319658 CCCTATTCATTGCAGTCTAAACATGT 59.680 38.462 0.00 0.00 0.00 3.21
214 215 6.238842 CCCCTATTCATTGCAGTCTAAACATG 60.239 42.308 0.00 0.00 0.00 3.21
215 216 5.829924 CCCCTATTCATTGCAGTCTAAACAT 59.170 40.000 0.00 0.00 0.00 2.71
216 217 5.192927 CCCCTATTCATTGCAGTCTAAACA 58.807 41.667 0.00 0.00 0.00 2.83
217 218 5.193679 ACCCCTATTCATTGCAGTCTAAAC 58.806 41.667 0.00 0.00 0.00 2.01
218 219 5.450818 ACCCCTATTCATTGCAGTCTAAA 57.549 39.130 0.00 0.00 0.00 1.85
219 220 5.450818 AACCCCTATTCATTGCAGTCTAA 57.549 39.130 0.00 0.00 0.00 2.10
220 221 6.763715 ATAACCCCTATTCATTGCAGTCTA 57.236 37.500 0.00 0.00 0.00 2.59
221 222 5.653255 ATAACCCCTATTCATTGCAGTCT 57.347 39.130 0.00 0.00 0.00 3.24
222 223 5.594317 ACAATAACCCCTATTCATTGCAGTC 59.406 40.000 0.00 0.00 31.28 3.51
223 224 5.518865 ACAATAACCCCTATTCATTGCAGT 58.481 37.500 0.00 0.00 31.28 4.40
224 225 6.096705 TCAACAATAACCCCTATTCATTGCAG 59.903 38.462 0.00 0.00 30.07 4.41
225 226 5.954752 TCAACAATAACCCCTATTCATTGCA 59.045 36.000 0.00 0.00 30.07 4.08
226 227 6.463995 TCAACAATAACCCCTATTCATTGC 57.536 37.500 0.00 0.00 30.07 3.56
227 228 8.236585 TGATCAACAATAACCCCTATTCATTG 57.763 34.615 0.00 0.00 33.75 2.82
228 229 7.014615 GCTGATCAACAATAACCCCTATTCATT 59.985 37.037 0.00 0.00 0.00 2.57
229 230 6.491403 GCTGATCAACAATAACCCCTATTCAT 59.509 38.462 0.00 0.00 0.00 2.57
230 231 5.827797 GCTGATCAACAATAACCCCTATTCA 59.172 40.000 0.00 0.00 0.00 2.57
231 232 5.241728 GGCTGATCAACAATAACCCCTATTC 59.758 44.000 0.00 0.00 0.00 1.75
232 233 5.103515 AGGCTGATCAACAATAACCCCTATT 60.104 40.000 0.00 0.00 0.00 1.73
233 234 4.416848 AGGCTGATCAACAATAACCCCTAT 59.583 41.667 0.00 0.00 0.00 2.57
234 235 3.785887 AGGCTGATCAACAATAACCCCTA 59.214 43.478 0.00 0.00 0.00 3.53
235 236 2.582636 AGGCTGATCAACAATAACCCCT 59.417 45.455 0.00 0.00 0.00 4.79
236 237 2.689983 CAGGCTGATCAACAATAACCCC 59.310 50.000 9.42 0.00 0.00 4.95
237 238 3.356290 ACAGGCTGATCAACAATAACCC 58.644 45.455 23.66 0.00 0.00 4.11
238 239 5.066505 CCTTACAGGCTGATCAACAATAACC 59.933 44.000 23.66 0.00 0.00 2.85
239 240 5.648092 ACCTTACAGGCTGATCAACAATAAC 59.352 40.000 23.66 0.00 39.63 1.89
240 241 5.815581 ACCTTACAGGCTGATCAACAATAA 58.184 37.500 23.66 5.66 39.63 1.40
241 242 5.045942 TGACCTTACAGGCTGATCAACAATA 60.046 40.000 23.66 0.00 39.63 1.90
242 243 4.263462 TGACCTTACAGGCTGATCAACAAT 60.263 41.667 23.66 0.00 39.63 2.71
243 244 3.072330 TGACCTTACAGGCTGATCAACAA 59.928 43.478 23.66 4.15 39.63 2.83
244 245 2.637382 TGACCTTACAGGCTGATCAACA 59.363 45.455 23.66 10.73 39.63 3.33
245 246 3.334583 TGACCTTACAGGCTGATCAAC 57.665 47.619 23.66 8.27 39.63 3.18
246 247 4.574674 ATTGACCTTACAGGCTGATCAA 57.425 40.909 23.66 19.85 39.63 2.57
247 248 5.692115 TTATTGACCTTACAGGCTGATCA 57.308 39.130 23.66 12.90 39.63 2.92
248 249 5.880332 TGTTTATTGACCTTACAGGCTGATC 59.120 40.000 23.66 10.51 39.63 2.92
249 250 5.815581 TGTTTATTGACCTTACAGGCTGAT 58.184 37.500 23.66 8.18 39.63 2.90
250 251 5.235850 TGTTTATTGACCTTACAGGCTGA 57.764 39.130 23.66 1.56 39.63 4.26
251 252 5.957842 TTGTTTATTGACCTTACAGGCTG 57.042 39.130 14.16 14.16 39.63 4.85
252 253 6.010219 ACATTGTTTATTGACCTTACAGGCT 58.990 36.000 0.00 0.00 39.63 4.58
253 254 6.267496 ACATTGTTTATTGACCTTACAGGC 57.733 37.500 0.00 0.00 39.63 4.85
254 255 9.010029 ACTAACATTGTTTATTGACCTTACAGG 57.990 33.333 7.45 0.00 42.49 4.00
256 257 9.005777 GGACTAACATTGTTTATTGACCTTACA 57.994 33.333 7.45 0.00 0.00 2.41
257 258 9.005777 TGGACTAACATTGTTTATTGACCTTAC 57.994 33.333 7.45 0.00 0.00 2.34
258 259 9.747898 ATGGACTAACATTGTTTATTGACCTTA 57.252 29.630 7.45 0.00 0.00 2.69
259 260 8.650143 ATGGACTAACATTGTTTATTGACCTT 57.350 30.769 7.45 2.69 0.00 3.50
260 261 9.747898 TTATGGACTAACATTGTTTATTGACCT 57.252 29.630 7.45 1.12 32.39 3.85
310 311 9.729023 CAACCGTGCAAAAATATATCTTTCATA 57.271 29.630 0.00 0.00 0.00 2.15
311 312 8.465999 TCAACCGTGCAAAAATATATCTTTCAT 58.534 29.630 0.00 0.00 0.00 2.57
312 313 7.821652 TCAACCGTGCAAAAATATATCTTTCA 58.178 30.769 0.00 0.00 0.00 2.69
313 314 8.856490 ATCAACCGTGCAAAAATATATCTTTC 57.144 30.769 0.00 0.00 0.00 2.62
316 317 9.897744 CATTATCAACCGTGCAAAAATATATCT 57.102 29.630 0.00 0.00 0.00 1.98
317 318 9.891828 TCATTATCAACCGTGCAAAAATATATC 57.108 29.630 0.00 0.00 0.00 1.63
319 320 9.509855 GTTCATTATCAACCGTGCAAAAATATA 57.490 29.630 0.00 0.00 0.00 0.86
320 321 7.491048 GGTTCATTATCAACCGTGCAAAAATAT 59.509 33.333 0.00 0.00 34.21 1.28
321 322 6.809196 GGTTCATTATCAACCGTGCAAAAATA 59.191 34.615 0.00 0.00 34.21 1.40
322 323 5.637387 GGTTCATTATCAACCGTGCAAAAAT 59.363 36.000 0.00 0.00 34.21 1.82
323 324 4.985409 GGTTCATTATCAACCGTGCAAAAA 59.015 37.500 0.00 0.00 34.21 1.94
324 325 4.279671 AGGTTCATTATCAACCGTGCAAAA 59.720 37.500 0.00 0.00 46.98 2.44
325 326 3.823873 AGGTTCATTATCAACCGTGCAAA 59.176 39.130 0.00 0.00 46.98 3.68
326 327 3.417101 AGGTTCATTATCAACCGTGCAA 58.583 40.909 0.00 0.00 46.98 4.08
327 328 3.006940 GAGGTTCATTATCAACCGTGCA 58.993 45.455 0.00 0.00 46.98 4.57
328 329 3.270877 AGAGGTTCATTATCAACCGTGC 58.729 45.455 0.00 0.00 46.98 5.34
329 330 6.978343 TTTAGAGGTTCATTATCAACCGTG 57.022 37.500 0.00 0.00 46.98 4.94
330 331 9.106070 GTATTTTAGAGGTTCATTATCAACCGT 57.894 33.333 0.00 0.00 46.98 4.83
331 332 9.326413 AGTATTTTAGAGGTTCATTATCAACCG 57.674 33.333 0.00 0.00 46.98 4.44
340 341 8.368668 CGGGATCTAAGTATTTTAGAGGTTCAT 58.631 37.037 0.00 0.00 34.84 2.57
341 342 7.201974 CCGGGATCTAAGTATTTTAGAGGTTCA 60.202 40.741 0.00 0.00 34.84 3.18
342 343 7.153315 CCGGGATCTAAGTATTTTAGAGGTTC 58.847 42.308 0.00 0.00 34.84 3.62
343 344 6.614496 ACCGGGATCTAAGTATTTTAGAGGTT 59.386 38.462 6.32 0.00 34.84 3.50
344 345 6.041751 CACCGGGATCTAAGTATTTTAGAGGT 59.958 42.308 6.32 2.53 34.84 3.85
345 346 6.456501 CACCGGGATCTAAGTATTTTAGAGG 58.543 44.000 6.32 2.03 34.84 3.69
346 347 5.927115 GCACCGGGATCTAAGTATTTTAGAG 59.073 44.000 6.32 0.00 34.84 2.43
347 348 5.364446 TGCACCGGGATCTAAGTATTTTAGA 59.636 40.000 6.32 0.00 35.71 2.10
348 349 5.607477 TGCACCGGGATCTAAGTATTTTAG 58.393 41.667 6.32 0.00 0.00 1.85
349 350 5.617528 TGCACCGGGATCTAAGTATTTTA 57.382 39.130 6.32 0.00 0.00 1.52
350 351 4.497291 TGCACCGGGATCTAAGTATTTT 57.503 40.909 6.32 0.00 0.00 1.82
351 352 4.196971 GTTGCACCGGGATCTAAGTATTT 58.803 43.478 6.32 0.00 0.00 1.40
352 353 3.199071 TGTTGCACCGGGATCTAAGTATT 59.801 43.478 6.32 0.00 0.00 1.89
353 354 2.769663 TGTTGCACCGGGATCTAAGTAT 59.230 45.455 6.32 0.00 0.00 2.12
354 355 2.093869 GTGTTGCACCGGGATCTAAGTA 60.094 50.000 6.32 0.00 0.00 2.24
355 356 0.981183 TGTTGCACCGGGATCTAAGT 59.019 50.000 6.32 0.00 0.00 2.24
356 357 1.338674 TGTGTTGCACCGGGATCTAAG 60.339 52.381 6.32 0.00 32.73 2.18
357 358 0.687920 TGTGTTGCACCGGGATCTAA 59.312 50.000 6.32 0.00 32.73 2.10
358 359 0.036765 GTGTGTTGCACCGGGATCTA 60.037 55.000 6.32 0.00 42.10 1.98
359 360 1.302511 GTGTGTTGCACCGGGATCT 60.303 57.895 6.32 0.00 42.10 2.75
360 361 2.677003 CGTGTGTTGCACCGGGATC 61.677 63.158 6.32 0.00 44.97 3.36
361 362 2.668212 CGTGTGTTGCACCGGGAT 60.668 61.111 6.32 0.00 44.97 3.85
362 363 4.920112 CCGTGTGTTGCACCGGGA 62.920 66.667 6.32 0.00 44.97 5.14
366 367 2.362329 AATTGCCCGTGTGTTGCACC 62.362 55.000 0.00 0.00 44.97 5.01
367 368 0.312416 TAATTGCCCGTGTGTTGCAC 59.688 50.000 0.00 0.00 44.36 4.57
368 369 0.312416 GTAATTGCCCGTGTGTTGCA 59.688 50.000 0.00 0.00 0.00 4.08
369 370 0.388006 GGTAATTGCCCGTGTGTTGC 60.388 55.000 0.16 0.00 0.00 4.17
370 371 1.243902 AGGTAATTGCCCGTGTGTTG 58.756 50.000 9.20 0.00 0.00 3.33
371 372 2.039348 ACTAGGTAATTGCCCGTGTGTT 59.961 45.455 9.20 0.00 0.00 3.32
372 373 1.626825 ACTAGGTAATTGCCCGTGTGT 59.373 47.619 9.20 0.00 0.00 3.72
373 374 2.396590 ACTAGGTAATTGCCCGTGTG 57.603 50.000 9.20 0.00 0.00 3.82
374 375 4.765813 ATTACTAGGTAATTGCCCGTGT 57.234 40.909 9.20 8.22 35.50 4.49
375 376 7.556733 TTTTATTACTAGGTAATTGCCCGTG 57.443 36.000 9.20 2.50 39.18 4.94
376 377 8.626526 CATTTTTATTACTAGGTAATTGCCCGT 58.373 33.333 9.20 9.36 39.18 5.28
377 378 8.626526 ACATTTTTATTACTAGGTAATTGCCCG 58.373 33.333 9.20 3.52 39.18 6.13
378 379 9.744468 CACATTTTTATTACTAGGTAATTGCCC 57.256 33.333 9.20 0.00 39.18 5.36
395 396 9.667107 CCTGAAGGAGAATAGTACACATTTTTA 57.333 33.333 0.00 0.00 37.39 1.52
396 397 7.121315 GCCTGAAGGAGAATAGTACACATTTTT 59.879 37.037 0.00 0.00 37.39 1.94
397 398 6.599638 GCCTGAAGGAGAATAGTACACATTTT 59.400 38.462 0.00 0.00 37.39 1.82
398 399 6.116126 GCCTGAAGGAGAATAGTACACATTT 58.884 40.000 0.00 0.00 37.39 2.32
399 400 5.396884 GGCCTGAAGGAGAATAGTACACATT 60.397 44.000 0.00 0.00 37.39 2.71
400 401 4.101741 GGCCTGAAGGAGAATAGTACACAT 59.898 45.833 0.00 0.00 37.39 3.21
401 402 3.451178 GGCCTGAAGGAGAATAGTACACA 59.549 47.826 0.00 0.00 37.39 3.72
402 403 3.491104 CGGCCTGAAGGAGAATAGTACAC 60.491 52.174 0.00 0.00 37.39 2.90
403 404 2.693591 CGGCCTGAAGGAGAATAGTACA 59.306 50.000 0.00 0.00 37.39 2.90
404 405 2.036089 CCGGCCTGAAGGAGAATAGTAC 59.964 54.545 0.00 0.00 37.39 2.73
405 406 2.317040 CCGGCCTGAAGGAGAATAGTA 58.683 52.381 0.00 0.00 37.39 1.82
406 407 1.123928 CCGGCCTGAAGGAGAATAGT 58.876 55.000 0.00 0.00 37.39 2.12
407 408 0.394565 CCCGGCCTGAAGGAGAATAG 59.605 60.000 0.00 0.00 37.39 1.73
408 409 0.031515 TCCCGGCCTGAAGGAGAATA 60.032 55.000 0.00 0.00 37.39 1.75
409 410 0.695803 ATCCCGGCCTGAAGGAGAAT 60.696 55.000 0.00 0.00 37.39 2.40
410 411 1.306997 ATCCCGGCCTGAAGGAGAA 60.307 57.895 0.00 0.00 37.39 2.87
411 412 2.066393 CATCCCGGCCTGAAGGAGA 61.066 63.158 0.00 0.00 37.39 3.71
412 413 2.507944 CATCCCGGCCTGAAGGAG 59.492 66.667 0.00 0.00 37.39 3.69
413 414 3.797353 GCATCCCGGCCTGAAGGA 61.797 66.667 0.00 1.66 37.39 3.36
414 415 3.426309 ATGCATCCCGGCCTGAAGG 62.426 63.158 0.00 0.00 38.53 3.46
415 416 1.895707 GATGCATCCCGGCCTGAAG 60.896 63.158 16.23 0.00 0.00 3.02
416 417 2.192979 GATGCATCCCGGCCTGAA 59.807 61.111 16.23 0.00 0.00 3.02
417 418 3.089217 TGATGCATCCCGGCCTGA 61.089 61.111 23.67 0.00 0.00 3.86
418 419 2.903855 GTGATGCATCCCGGCCTG 60.904 66.667 23.67 0.00 0.00 4.85
419 420 4.552365 CGTGATGCATCCCGGCCT 62.552 66.667 21.92 0.00 0.00 5.19
420 421 4.545706 TCGTGATGCATCCCGGCC 62.546 66.667 27.43 8.99 0.00 6.13
421 422 3.272334 GTCGTGATGCATCCCGGC 61.272 66.667 27.43 23.93 0.00 6.13
422 423 0.815213 AATGTCGTGATGCATCCCGG 60.815 55.000 27.43 15.23 0.00 5.73
423 424 1.526887 GTAATGTCGTGATGCATCCCG 59.473 52.381 23.36 23.36 0.00 5.14
424 425 2.802816 GAGTAATGTCGTGATGCATCCC 59.197 50.000 23.67 11.89 0.00 3.85
425 426 2.802816 GGAGTAATGTCGTGATGCATCC 59.197 50.000 23.67 13.71 0.00 3.51
426 427 3.246226 GTGGAGTAATGTCGTGATGCATC 59.754 47.826 20.14 20.14 0.00 3.91
427 428 3.198068 GTGGAGTAATGTCGTGATGCAT 58.802 45.455 0.00 0.00 0.00 3.96
428 429 2.028567 TGTGGAGTAATGTCGTGATGCA 60.029 45.455 0.00 0.00 0.00 3.96
429 430 2.348666 GTGTGGAGTAATGTCGTGATGC 59.651 50.000 0.00 0.00 0.00 3.91
430 431 3.584834 TGTGTGGAGTAATGTCGTGATG 58.415 45.455 0.00 0.00 0.00 3.07
431 432 3.258372 ACTGTGTGGAGTAATGTCGTGAT 59.742 43.478 0.00 0.00 0.00 3.06
432 433 2.626266 ACTGTGTGGAGTAATGTCGTGA 59.374 45.455 0.00 0.00 0.00 4.35
433 434 3.026630 ACTGTGTGGAGTAATGTCGTG 57.973 47.619 0.00 0.00 0.00 4.35
434 435 3.650139 GAACTGTGTGGAGTAATGTCGT 58.350 45.455 0.00 0.00 0.00 4.34
435 436 2.661675 CGAACTGTGTGGAGTAATGTCG 59.338 50.000 0.00 0.00 0.00 4.35
436 437 2.412089 GCGAACTGTGTGGAGTAATGTC 59.588 50.000 0.00 0.00 0.00 3.06
437 438 2.413837 GCGAACTGTGTGGAGTAATGT 58.586 47.619 0.00 0.00 0.00 2.71
438 439 1.732259 GGCGAACTGTGTGGAGTAATG 59.268 52.381 0.00 0.00 0.00 1.90
439 440 1.623811 AGGCGAACTGTGTGGAGTAAT 59.376 47.619 0.00 0.00 0.00 1.89
440 441 1.045407 AGGCGAACTGTGTGGAGTAA 58.955 50.000 0.00 0.00 0.00 2.24
441 442 0.317160 CAGGCGAACTGTGTGGAGTA 59.683 55.000 0.00 0.00 42.42 2.59
442 443 1.069765 CAGGCGAACTGTGTGGAGT 59.930 57.895 0.00 0.00 42.42 3.85
443 444 3.957260 CAGGCGAACTGTGTGGAG 58.043 61.111 0.00 0.00 42.42 3.86
847 848 0.038892 GTGGTCGGTAGTCTTCGCAA 60.039 55.000 0.00 0.00 0.00 4.85
883 884 4.062991 CGTAATACAAAGGGGGCATAGAC 58.937 47.826 0.00 0.00 0.00 2.59
914 915 2.346803 CAGATCACGACGAAATGGGTT 58.653 47.619 0.00 0.00 0.00 4.11
925 926 2.755876 AGCGGAGGCAGATCACGA 60.756 61.111 0.00 0.00 43.41 4.35
1052 1057 1.791103 CGTCTCCAGCGAGATCCTCC 61.791 65.000 0.00 0.00 46.75 4.30
1131 1136 3.580193 TAGAGCTCGTACGCCGCC 61.580 66.667 20.61 14.15 36.19 6.13
1368 1373 3.314331 CGCCACTCCAGACCACCT 61.314 66.667 0.00 0.00 0.00 4.00
1371 1376 2.203640 ACTCGCCACTCCAGACCA 60.204 61.111 0.00 0.00 0.00 4.02
1470 1475 0.673956 TCCTGTCTCTGTCCGAGTCG 60.674 60.000 5.29 5.29 40.75 4.18
1571 1576 7.293299 TCACATCCTTATCAGTAAATGGGAGAT 59.707 37.037 0.00 0.00 0.00 2.75
1572 1577 6.615316 TCACATCCTTATCAGTAAATGGGAGA 59.385 38.462 0.00 0.00 0.00 3.71
1629 1634 2.034878 TCGACAATCTCATCCTCCTGG 58.965 52.381 0.00 0.00 0.00 4.45
1638 1643 3.509967 TCTTAAGCAGGTCGACAATCTCA 59.490 43.478 18.91 0.00 0.00 3.27
1643 1648 3.325870 CACATCTTAAGCAGGTCGACAA 58.674 45.455 18.91 0.39 0.00 3.18
1657 1662 6.240894 TCTCCTTAACATTTCTGCACATCTT 58.759 36.000 0.00 0.00 0.00 2.40
1706 1711 1.522806 TTGCTCGCGTCTTTGGTGT 60.523 52.632 5.77 0.00 0.00 4.16
1719 1724 4.732938 GCAATATTCTCAAGGCAGTTGCTC 60.733 45.833 3.88 0.00 41.70 4.26
1721 1726 3.442100 GCAATATTCTCAAGGCAGTTGC 58.558 45.455 0.00 0.00 35.94 4.17
1729 1734 3.535561 ACGACCAGGCAATATTCTCAAG 58.464 45.455 0.00 0.00 0.00 3.02
1740 1745 1.955495 ATGATGCGTACGACCAGGCA 61.955 55.000 21.65 10.94 42.85 4.75
1797 1802 1.003580 AGCCGATGAGTGGTGTCAAAT 59.996 47.619 0.00 0.00 0.00 2.32
1963 1968 2.538512 ACGGTTGTAAAGAGGACCAC 57.461 50.000 0.00 0.00 32.41 4.16
1964 1969 2.701951 AGAACGGTTGTAAAGAGGACCA 59.298 45.455 0.00 0.00 32.41 4.02
1965 1970 3.006644 AGAGAACGGTTGTAAAGAGGACC 59.993 47.826 0.00 0.00 0.00 4.46
1991 2000 7.881775 AATACCTGTCAACAAGAAAGACTTT 57.118 32.000 0.00 0.00 36.61 2.66
2106 2115 0.991146 TGGAGAGGGCATGCTTTGTA 59.009 50.000 18.92 0.00 0.00 2.41
2148 2157 2.173519 ACTGCATTGAACCAAGATGGG 58.826 47.619 0.87 0.00 43.37 4.00
2215 2224 3.387374 TCCATTGTGCTTTCCATGTTGTT 59.613 39.130 0.00 0.00 0.00 2.83
2344 2353 0.811281 CCTGCCGAAAAATGTCCTCC 59.189 55.000 0.00 0.00 0.00 4.30
2441 2450 1.421268 TGGTCACCTGCTCAATGAAGT 59.579 47.619 0.00 0.00 0.00 3.01
2442 2451 2.189594 TGGTCACCTGCTCAATGAAG 57.810 50.000 0.00 0.00 0.00 3.02
2497 2507 4.651503 TCACAATTTTTCTTACAAGGGGCA 59.348 37.500 0.00 0.00 0.00 5.36
2688 2701 6.524586 CGTCTTGAGAATTGTATTTTCCAAGC 59.475 38.462 0.00 0.00 34.67 4.01
2691 2704 5.106317 GCCGTCTTGAGAATTGTATTTTCCA 60.106 40.000 0.00 0.00 0.00 3.53
2755 2768 8.253810 TCATCCTGTAGCTTATAGAATGCATAC 58.746 37.037 0.00 0.00 0.00 2.39
2797 2810 6.000246 TCCAAGTGGAAGTATGCATAATGA 58.000 37.500 8.28 0.00 42.18 2.57
3036 3049 2.159198 GCGCCAATCAATGACTTGGAAT 60.159 45.455 20.70 0.00 43.83 3.01
3277 3293 2.029918 GGCTGGACAGTTCAAAATGGTC 60.030 50.000 0.82 0.00 0.00 4.02
3308 3324 5.182001 ACTGCAAACTGAGCCTAAATACTTG 59.818 40.000 0.00 0.00 0.00 3.16
3341 3357 9.086336 AGCAAAAATGATCAAATAAACCATACG 57.914 29.630 0.00 0.00 0.00 3.06
3397 3413 1.970640 GGCCCCAAAATTTGACTGAGT 59.029 47.619 7.37 0.00 0.00 3.41
3418 3434 2.988010 TGTGCGCCTTCAGATCTAAT 57.012 45.000 4.18 0.00 0.00 1.73
3428 3444 2.816958 CGCTGAGATGTGCGCCTT 60.817 61.111 4.18 0.00 45.50 4.35
3448 3464 3.616956 AGACGGATGCTTTCAGAATCA 57.383 42.857 0.00 0.00 31.55 2.57
3471 3487 6.525280 CACGAATATAAAAACCCGAAACCAAG 59.475 38.462 0.00 0.00 0.00 3.61
3676 3692 5.586243 CGCATAGGAAAATCCAGAAAGAGAA 59.414 40.000 0.00 0.00 39.61 2.87
3699 3813 2.794910 ACGAAACTGATGAAGTGACACG 59.205 45.455 0.00 0.00 39.81 4.49
3742 3897 1.381327 AACTAGCAGCTCGCCCCTA 60.381 57.895 0.00 0.00 44.04 3.53
3767 3924 1.703411 CCTCCATCTCCACCTCTCTC 58.297 60.000 0.00 0.00 0.00 3.20
3802 3959 2.052690 GGAGACTACCTCGCTGCCA 61.053 63.158 0.00 0.00 42.89 4.92
3862 4027 4.282703 ACCTCAACCGTGTCAAGTACTAAT 59.717 41.667 0.00 0.00 0.00 1.73
3914 4079 1.463674 CGATTTCCTGAAACCCCTGG 58.536 55.000 0.00 0.00 32.51 4.45
3956 4122 4.895889 TGGCTACTCTACATACAAGCAGAT 59.104 41.667 0.00 0.00 0.00 2.90
3989 4155 6.765036 AGCACTTGACATAAATCGATGAGAAT 59.235 34.615 0.00 0.00 0.00 2.40
4004 4170 4.498241 CACTTCTAGCATAGCACTTGACA 58.502 43.478 0.00 0.00 38.99 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.