Multiple sequence alignment - TraesCS2B01G326900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G326900 chr2B 100.000 7090 0 0 1 7090 468244493 468237404 0.000000e+00 13093.0
1 TraesCS2B01G326900 chr2A 94.817 2547 88 19 3718 6239 533466312 533463785 0.000000e+00 3932.0
2 TraesCS2B01G326900 chr2A 90.169 2360 118 54 740 3020 533469218 533466894 0.000000e+00 2968.0
3 TraesCS2B01G326900 chr2A 97.783 451 8 1 3235 3685 533466752 533466304 0.000000e+00 776.0
4 TraesCS2B01G326900 chr2A 88.372 387 22 9 6285 6652 533463778 533463396 1.810000e-120 444.0
5 TraesCS2B01G326900 chr2A 85.572 402 33 12 1 389 533471641 533471252 1.430000e-106 398.0
6 TraesCS2B01G326900 chr2A 82.637 455 35 18 6654 7090 533463365 533462937 5.230000e-96 363.0
7 TraesCS2B01G326900 chr2A 94.149 188 10 1 3021 3207 533466924 533466737 1.160000e-72 285.0
8 TraesCS2B01G326900 chr2A 82.051 312 28 14 394 678 533469555 533469245 2.560000e-59 241.0
9 TraesCS2B01G326900 chr2A 87.671 73 9 0 1220 1292 740852028 740851956 1.270000e-12 86.1
10 TraesCS2B01G326900 chr2D 96.550 1681 43 5 4237 5912 395132201 395130531 0.000000e+00 2769.0
11 TraesCS2B01G326900 chr2D 91.080 2074 104 41 740 2748 395135965 395133908 0.000000e+00 2730.0
12 TraesCS2B01G326900 chr2D 93.173 996 47 7 3235 4221 395133292 395132309 0.000000e+00 1443.0
13 TraesCS2B01G326900 chr2D 85.414 713 55 29 1 685 395136673 395135982 0.000000e+00 695.0
14 TraesCS2B01G326900 chr2D 89.976 419 18 11 6254 6652 395130261 395129847 2.930000e-143 520.0
15 TraesCS2B01G326900 chr2D 95.122 287 10 2 2738 3020 395133720 395133434 3.900000e-122 449.0
16 TraesCS2B01G326900 chr2D 95.122 287 9 4 5956 6239 395130530 395130246 1.400000e-121 448.0
17 TraesCS2B01G326900 chr2D 92.021 188 14 1 3021 3207 395133464 395133277 5.450000e-66 263.0
18 TraesCS2B01G326900 chr2D 86.585 82 9 2 1220 1299 608920136 608920055 9.800000e-14 89.8
19 TraesCS2B01G326900 chr3B 79.722 1509 282 18 4343 5833 133195135 133196637 0.000000e+00 1070.0
20 TraesCS2B01G326900 chr3B 87.868 272 31 2 3259 3529 133194504 133194774 1.150000e-82 318.0
21 TraesCS2B01G326900 chr3B 83.571 280 44 2 4343 4621 132004314 132004592 1.960000e-65 261.0
22 TraesCS2B01G326900 chr3B 87.113 194 25 0 2213 2406 133192549 133192742 3.330000e-53 220.0
23 TraesCS2B01G326900 chr3D 79.445 1513 281 21 4343 5832 84571561 84570056 0.000000e+00 1044.0
24 TraesCS2B01G326900 chr3D 79.445 1513 281 21 4343 5832 84589357 84587852 0.000000e+00 1044.0
25 TraesCS2B01G326900 chr3D 88.104 269 30 2 3262 3529 84572181 84571914 1.150000e-82 318.0
26 TraesCS2B01G326900 chr3D 88.104 269 30 2 3262 3529 84589977 84589710 1.150000e-82 318.0
27 TraesCS2B01G326900 chr3D 86.121 281 37 2 3262 3541 84508762 84508483 1.160000e-77 302.0
28 TraesCS2B01G326900 chr3D 83.986 281 41 4 4343 4621 84508142 84507864 4.220000e-67 267.0
29 TraesCS2B01G326900 chr3D 87.817 197 24 0 2213 2409 84573246 84573050 1.540000e-56 231.0
30 TraesCS2B01G326900 chr3D 85.340 191 28 0 2219 2409 84509987 84509797 1.560000e-46 198.0
31 TraesCS2B01G326900 chr3A 80.952 1134 216 0 4699 5832 100887466 100886333 0.000000e+00 898.0
32 TraesCS2B01G326900 chr3A 88.476 269 29 2 3262 3529 100888464 100888197 2.470000e-84 324.0
33 TraesCS2B01G326900 chr3A 87.817 197 24 0 2213 2409 100889636 100889440 1.540000e-56 231.0
34 TraesCS2B01G326900 chr5B 85.915 71 10 0 1220 1290 631894121 631894051 7.630000e-10 76.8
35 TraesCS2B01G326900 chr5A 85.915 71 10 0 1220 1290 631513782 631513712 7.630000e-10 76.8
36 TraesCS2B01G326900 chr5D 84.507 71 11 0 1220 1290 503085035 503084965 3.550000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G326900 chr2B 468237404 468244493 7089 True 13093.000000 13093 100.000000 1 7090 1 chr2B.!!$R1 7089
1 TraesCS2B01G326900 chr2A 533462937 533471641 8704 True 1175.875000 3932 89.443750 1 7090 8 chr2A.!!$R2 7089
2 TraesCS2B01G326900 chr2D 395129847 395136673 6826 True 1164.625000 2769 92.307250 1 6652 8 chr2D.!!$R2 6651
3 TraesCS2B01G326900 chr3B 133192549 133196637 4088 False 536.000000 1070 84.901000 2213 5833 3 chr3B.!!$F2 3620
4 TraesCS2B01G326900 chr3D 84587852 84589977 2125 True 681.000000 1044 83.774500 3262 5832 2 chr3D.!!$R3 2570
5 TraesCS2B01G326900 chr3D 84570056 84573246 3190 True 531.000000 1044 85.122000 2213 5832 3 chr3D.!!$R2 3619
6 TraesCS2B01G326900 chr3D 84507864 84509987 2123 True 255.666667 302 85.149000 2219 4621 3 chr3D.!!$R1 2402
7 TraesCS2B01G326900 chr3A 100886333 100889636 3303 True 484.333333 898 85.748333 2213 5832 3 chr3A.!!$R1 3619

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
320 334 0.178929 TTCCCTAGCCTAGCCTAGCC 60.179 60.000 2.10 0.00 34.74 3.93 F
845 2600 0.748005 CTGGTACGATTTGGGCCTGG 60.748 60.000 4.53 0.00 0.00 4.45 F
1627 3435 0.479589 AAGGGGGTGAAATGGGGAGA 60.480 55.000 0.00 0.00 0.00 3.71 F
1876 3698 0.165511 CGCTCTGAAAACTCTGCTGC 59.834 55.000 0.00 0.00 0.00 5.25 F
2585 4417 0.807496 CCTTTTCAGTGCTGCTAGGC 59.193 55.000 0.00 0.00 0.00 3.93 F
3023 5741 1.956477 AGCTTGTCATTTGTGGACCAC 59.044 47.619 18.28 18.28 34.36 4.16 F
3024 5742 1.956477 GCTTGTCATTTGTGGACCACT 59.044 47.619 24.81 2.35 35.11 4.00 F
4065 7757 2.092838 CGAATTCGAGTTGGTCTTCAGC 59.907 50.000 23.29 0.00 43.02 4.26 F
5147 9047 1.584380 CTGGCCTCTTTGCACTGCTC 61.584 60.000 3.32 0.00 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1508 3300 0.967380 AGAAAAATCCTGGCGCTGGG 60.967 55.000 7.64 10.25 0.00 4.45 R
1823 3634 2.357009 CACGCCTACTGAAGTATACGGT 59.643 50.000 13.52 0.00 34.84 4.83 R
3000 5718 3.072330 TGGTCCACAAATGACAAGCTCTA 59.928 43.478 0.00 0.00 34.36 2.43 R
3240 5958 4.515191 TCTGCAGCGTAATTGAAGAAAGTT 59.485 37.500 9.47 0.00 27.09 2.66 R
4504 8342 0.103026 TCGCGATGAGATCTTGGGTG 59.897 55.000 3.71 0.00 0.00 4.61 R
4686 8586 1.022735 CTCCTGCATGGAAGCATGAC 58.977 55.000 0.00 0.00 45.63 3.06 R
5042 8942 4.522022 AGTATTACCGGGATAAAGAGACCG 59.478 45.833 6.32 0.00 45.57 4.79 R
5624 9524 2.435437 ACCAGGCTTTGCAAAGTCAAAT 59.565 40.909 37.37 22.69 42.92 2.32 R
6944 10922 0.035036 CATGATGGCTCAGCGATCCT 59.965 55.000 18.11 6.41 41.83 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.116531 GTGCTAACACGGGGCGTC 61.117 66.667 0.00 0.00 38.32 5.19
35 36 0.456142 GGGCGTCGAAAATGGCTTTC 60.456 55.000 0.00 0.00 40.17 2.62
58 59 1.767759 CCTTTTGCTAGGGGATGGTG 58.232 55.000 0.00 0.00 0.00 4.17
108 110 4.597004 TCGTAGTAGGGAACAGTGATCTT 58.403 43.478 0.00 0.00 0.00 2.40
129 131 3.857157 AACCCATGTCGCCATAACTAT 57.143 42.857 0.00 0.00 0.00 2.12
130 132 4.967084 AACCCATGTCGCCATAACTATA 57.033 40.909 0.00 0.00 0.00 1.31
131 133 4.267349 ACCCATGTCGCCATAACTATAC 57.733 45.455 0.00 0.00 0.00 1.47
132 134 3.007614 ACCCATGTCGCCATAACTATACC 59.992 47.826 0.00 0.00 0.00 2.73
133 135 3.596214 CCATGTCGCCATAACTATACCC 58.404 50.000 0.00 0.00 0.00 3.69
137 139 3.322828 TGTCGCCATAACTATACCCCTTC 59.677 47.826 0.00 0.00 0.00 3.46
177 185 3.027292 GTTTGGCGCGAAACCAGA 58.973 55.556 30.57 3.04 38.73 3.86
178 186 1.082104 GTTTGGCGCGAAACCAGAG 60.082 57.895 30.57 0.00 38.73 3.35
179 187 1.525077 TTTGGCGCGAAACCAGAGT 60.525 52.632 13.91 0.00 38.73 3.24
180 188 0.249953 TTTGGCGCGAAACCAGAGTA 60.250 50.000 13.91 0.00 38.73 2.59
228 236 3.001330 CCGGCGTCTTTATCTGAATGAAC 59.999 47.826 6.01 0.00 0.00 3.18
308 322 1.810755 GCCCGTTGTTTTCTTCCCTAG 59.189 52.381 0.00 0.00 0.00 3.02
310 324 1.810755 CCGTTGTTTTCTTCCCTAGCC 59.189 52.381 0.00 0.00 0.00 3.93
311 325 2.552373 CCGTTGTTTTCTTCCCTAGCCT 60.552 50.000 0.00 0.00 0.00 4.58
312 326 3.307199 CCGTTGTTTTCTTCCCTAGCCTA 60.307 47.826 0.00 0.00 0.00 3.93
314 328 3.629142 TGTTTTCTTCCCTAGCCTAGC 57.371 47.619 0.00 0.00 0.00 3.42
315 329 2.238898 TGTTTTCTTCCCTAGCCTAGCC 59.761 50.000 0.00 0.00 0.00 3.93
316 330 2.506231 GTTTTCTTCCCTAGCCTAGCCT 59.494 50.000 0.00 0.00 0.00 4.58
318 332 2.982339 TCTTCCCTAGCCTAGCCTAG 57.018 55.000 0.59 0.59 35.62 3.02
320 334 0.178929 TTCCCTAGCCTAGCCTAGCC 60.179 60.000 2.10 0.00 34.74 3.93
321 335 1.156330 CCCTAGCCTAGCCTAGCCA 59.844 63.158 2.10 0.00 34.74 4.75
322 336 0.902516 CCCTAGCCTAGCCTAGCCAG 60.903 65.000 2.10 0.00 34.74 4.85
323 337 1.540435 CCTAGCCTAGCCTAGCCAGC 61.540 65.000 2.10 0.00 34.74 4.85
324 338 1.534235 TAGCCTAGCCTAGCCAGCC 60.534 63.158 0.00 0.00 0.00 4.85
325 339 2.312339 TAGCCTAGCCTAGCCAGCCA 62.312 60.000 0.00 0.00 0.00 4.75
369 389 1.886886 TTCCGTTTAGTTCCTGGCAC 58.113 50.000 0.00 0.00 0.00 5.01
386 406 3.959573 GCACAGAGCACCTGATAATTC 57.040 47.619 12.27 0.00 45.78 2.17
495 2207 4.756458 GACAGCAGCAGCCTCGCT 62.756 66.667 0.00 0.00 45.21 4.93
496 2208 4.756458 ACAGCAGCAGCCTCGCTC 62.756 66.667 0.00 0.00 41.38 5.03
520 2235 1.431845 CCGGCCAAATTTCCGTAGC 59.568 57.895 14.98 2.38 43.87 3.58
549 2264 2.925170 AGCCCTTGTCCGCTGTCT 60.925 61.111 0.00 0.00 32.98 3.41
552 2267 1.374758 CCCTTGTCCGCTGTCTCAC 60.375 63.158 0.00 0.00 0.00 3.51
554 2269 1.007271 CTTGTCCGCTGTCTCACGT 60.007 57.895 0.00 0.00 0.00 4.49
556 2271 2.502080 GTCCGCTGTCTCACGTCG 60.502 66.667 0.00 0.00 0.00 5.12
557 2272 4.400109 TCCGCTGTCTCACGTCGC 62.400 66.667 0.00 0.00 0.00 5.19
558 2273 4.406173 CCGCTGTCTCACGTCGCT 62.406 66.667 0.00 0.00 0.00 4.93
559 2274 3.168604 CGCTGTCTCACGTCGCTG 61.169 66.667 0.00 0.00 0.00 5.18
592 2329 2.742372 GTTCGCCAGCACGATGGT 60.742 61.111 2.88 0.00 42.54 3.55
630 2367 5.385509 TCCATCAGTTTCGGAAATTTTCC 57.614 39.130 16.80 16.80 46.62 3.13
645 2387 6.127730 GGAAATTTTCCTATCCTTCTCGCAAA 60.128 38.462 19.01 0.00 46.57 3.68
646 2388 5.819825 ATTTTCCTATCCTTCTCGCAAAC 57.180 39.130 0.00 0.00 0.00 2.93
650 2392 4.647611 TCCTATCCTTCTCGCAAACAAAA 58.352 39.130 0.00 0.00 0.00 2.44
712 2455 2.674796 CTGTAGTAGTCAGCCCCAAC 57.325 55.000 0.00 0.00 0.00 3.77
713 2456 1.899814 CTGTAGTAGTCAGCCCCAACA 59.100 52.381 0.00 0.00 0.00 3.33
714 2457 2.301870 CTGTAGTAGTCAGCCCCAACAA 59.698 50.000 0.00 0.00 0.00 2.83
715 2458 2.706723 TGTAGTAGTCAGCCCCAACAAA 59.293 45.455 0.00 0.00 0.00 2.83
716 2459 3.136809 TGTAGTAGTCAGCCCCAACAAAA 59.863 43.478 0.00 0.00 0.00 2.44
717 2460 3.306472 AGTAGTCAGCCCCAACAAAAA 57.694 42.857 0.00 0.00 0.00 1.94
738 2481 6.720012 AAAAGAGAGAGAGAGAAAAATCGC 57.280 37.500 0.00 0.00 0.00 4.58
778 2521 2.517598 CGTGTGTTTCAGACGGAGG 58.482 57.895 10.72 0.00 45.21 4.30
788 2531 5.699458 TGTTTCAGACGGAGGTAAGATTTTC 59.301 40.000 0.00 0.00 0.00 2.29
789 2532 4.467198 TCAGACGGAGGTAAGATTTTCC 57.533 45.455 0.00 0.00 0.00 3.13
796 2539 5.007682 CGGAGGTAAGATTTTCCTTTTCCA 58.992 41.667 0.00 0.00 0.00 3.53
797 2540 5.123979 CGGAGGTAAGATTTTCCTTTTCCAG 59.876 44.000 0.00 0.00 0.00 3.86
799 2542 6.892456 GGAGGTAAGATTTTCCTTTTCCAGAT 59.108 38.462 0.00 0.00 0.00 2.90
800 2543 7.397476 GGAGGTAAGATTTTCCTTTTCCAGATT 59.603 37.037 0.00 0.00 0.00 2.40
801 2544 9.462606 GAGGTAAGATTTTCCTTTTCCAGATTA 57.537 33.333 0.00 0.00 0.00 1.75
810 2553 6.539649 TCCTTTTCCAGATTATATTTCGCG 57.460 37.500 0.00 0.00 0.00 5.87
812 2555 7.211573 TCCTTTTCCAGATTATATTTCGCGTA 58.788 34.615 5.77 0.00 0.00 4.42
813 2556 7.384115 TCCTTTTCCAGATTATATTTCGCGTAG 59.616 37.037 5.77 0.00 0.00 3.51
814 2557 7.384115 CCTTTTCCAGATTATATTTCGCGTAGA 59.616 37.037 5.77 0.00 0.00 2.59
825 2580 2.695646 GCGTAGAAAGAAGCGCCG 59.304 61.111 2.29 0.00 43.52 6.46
829 2584 1.447838 TAGAAAGAAGCGCCGCTGG 60.448 57.895 14.52 0.00 39.62 4.85
845 2600 0.748005 CTGGTACGATTTGGGCCTGG 60.748 60.000 4.53 0.00 0.00 4.45
856 2611 1.377690 TGGGCCTGGTTTAATCTCCA 58.622 50.000 4.53 0.00 0.00 3.86
859 2614 2.508300 GGGCCTGGTTTAATCTCCAGTA 59.492 50.000 0.84 0.00 46.79 2.74
877 2633 8.105197 TCTCCAGTACCCTTCCTTTTTATTTAC 58.895 37.037 0.00 0.00 0.00 2.01
881 2637 8.727910 CAGTACCCTTCCTTTTTATTTACTGTC 58.272 37.037 0.00 0.00 32.69 3.51
908 2664 3.437049 GCTTTCACTCGCTACCATTTCTT 59.563 43.478 0.00 0.00 0.00 2.52
943 2699 1.823899 CATAAAGCGCAGGGACCCC 60.824 63.158 11.47 1.17 0.00 4.95
1014 2775 1.079127 AAGAATGGACGGCGACCAG 60.079 57.895 31.90 0.00 40.89 4.00
1295 3059 2.347242 GACTACGAGTAAGCGCCCCC 62.347 65.000 2.29 0.00 33.86 5.40
1325 3090 1.001248 CCCCTCCCCGTCTCAACTA 59.999 63.158 0.00 0.00 0.00 2.24
1407 3172 4.004196 CCAAGGGGAATACGTTATCCTC 57.996 50.000 16.17 13.47 36.38 3.71
1409 3174 4.836736 CCAAGGGGAATACGTTATCCTCTA 59.163 45.833 18.85 0.00 46.02 2.43
1436 3201 4.213482 AGCGTGATCCTTTTTGTCTTGTAC 59.787 41.667 0.00 0.00 0.00 2.90
1438 3203 5.679906 CGTGATCCTTTTTGTCTTGTACAG 58.320 41.667 0.00 0.00 39.87 2.74
1439 3204 5.452777 GTGATCCTTTTTGTCTTGTACAGC 58.547 41.667 0.00 0.00 39.87 4.40
1440 3205 5.008613 GTGATCCTTTTTGTCTTGTACAGCA 59.991 40.000 0.00 0.00 39.87 4.41
1441 3206 4.893424 TCCTTTTTGTCTTGTACAGCAC 57.107 40.909 0.00 0.00 39.87 4.40
1442 3207 4.523083 TCCTTTTTGTCTTGTACAGCACT 58.477 39.130 0.00 0.00 39.87 4.40
1443 3208 4.335315 TCCTTTTTGTCTTGTACAGCACTG 59.665 41.667 0.00 0.00 39.87 3.66
1444 3209 4.096382 CCTTTTTGTCTTGTACAGCACTGT 59.904 41.667 8.57 8.57 46.87 3.55
1445 3210 5.295787 CCTTTTTGTCTTGTACAGCACTGTA 59.704 40.000 6.41 6.41 44.42 2.74
1479 3271 2.160615 CGCGGATACTGTCATCTAGGAG 59.839 54.545 0.00 0.00 0.00 3.69
1482 3274 4.393680 GCGGATACTGTCATCTAGGAGTAG 59.606 50.000 0.00 0.00 0.00 2.57
1483 3275 4.938832 CGGATACTGTCATCTAGGAGTAGG 59.061 50.000 0.00 0.00 0.00 3.18
1484 3276 5.280062 CGGATACTGTCATCTAGGAGTAGGA 60.280 48.000 0.00 0.00 0.00 2.94
1485 3277 6.577438 CGGATACTGTCATCTAGGAGTAGGAT 60.577 46.154 0.00 0.00 0.00 3.24
1486 3278 7.179269 GGATACTGTCATCTAGGAGTAGGATT 58.821 42.308 0.00 0.00 0.00 3.01
1487 3279 8.330247 GGATACTGTCATCTAGGAGTAGGATTA 58.670 40.741 0.00 0.00 0.00 1.75
1488 3280 9.914834 GATACTGTCATCTAGGAGTAGGATTAT 57.085 37.037 0.00 0.00 0.00 1.28
1530 3322 2.331194 CAGCGCCAGGATTTTTCTTTG 58.669 47.619 2.29 0.00 0.00 2.77
1531 3323 2.030007 CAGCGCCAGGATTTTTCTTTGA 60.030 45.455 2.29 0.00 0.00 2.69
1534 3326 3.807071 GCGCCAGGATTTTTCTTTGAAAA 59.193 39.130 0.00 1.85 33.46 2.29
1548 3340 7.781324 TTCTTTGAAAAGCAATCCTAGGAAT 57.219 32.000 17.30 3.99 36.15 3.01
1571 3366 8.684973 AATGTACTTCGAGTAACACTCATTAC 57.315 34.615 7.08 3.08 45.30 1.89
1616 3424 4.098501 GCTATCATTGAAGAAAAGGGGGTG 59.901 45.833 0.00 0.00 0.00 4.61
1627 3435 0.479589 AAGGGGGTGAAATGGGGAGA 60.480 55.000 0.00 0.00 0.00 3.71
1632 3440 2.243736 GGGGTGAAATGGGGAGATGTAA 59.756 50.000 0.00 0.00 0.00 2.41
1658 3466 5.382303 CCTTTACACAAACGAGCAGTAATG 58.618 41.667 0.00 0.00 0.00 1.90
1666 3474 7.514805 CACAAACGAGCAGTAATGTGTTTATA 58.485 34.615 16.13 0.00 41.75 0.98
1668 3476 9.373603 ACAAACGAGCAGTAATGTGTTTATATA 57.626 29.630 9.00 0.00 33.49 0.86
1773 3584 2.223340 GGCTGTTGCATAAGTTCGATGG 60.223 50.000 0.00 0.00 41.91 3.51
1793 3604 5.789643 TGGTTGAATTCTGAAGGGAAAAG 57.210 39.130 7.05 0.00 0.00 2.27
1806 3617 5.595133 TGAAGGGAAAAGAAATAACGTGGTT 59.405 36.000 0.00 0.00 0.00 3.67
1808 3619 6.080648 AGGGAAAAGAAATAACGTGGTTTC 57.919 37.500 14.67 14.67 35.18 2.78
1809 3620 5.595133 AGGGAAAAGAAATAACGTGGTTTCA 59.405 36.000 21.05 0.00 36.92 2.69
1810 3621 5.918576 GGGAAAAGAAATAACGTGGTTTCAG 59.081 40.000 21.05 0.00 36.92 3.02
1813 3624 7.865889 GGAAAAGAAATAACGTGGTTTCAGAAT 59.134 33.333 21.05 9.43 36.92 2.40
1814 3625 9.244799 GAAAAGAAATAACGTGGTTTCAGAATT 57.755 29.630 21.05 12.91 36.92 2.17
1815 3626 8.574196 AAAGAAATAACGTGGTTTCAGAATTG 57.426 30.769 21.05 0.00 36.92 2.32
1816 3627 7.504924 AGAAATAACGTGGTTTCAGAATTGA 57.495 32.000 21.05 0.00 36.92 2.57
1817 3628 7.936584 AGAAATAACGTGGTTTCAGAATTGAA 58.063 30.769 21.05 0.00 41.44 2.69
1818 3629 7.860872 AGAAATAACGTGGTTTCAGAATTGAAC 59.139 33.333 21.05 0.00 42.79 3.18
1819 3630 6.877611 ATAACGTGGTTTCAGAATTGAACT 57.122 33.333 0.00 0.00 42.79 3.01
1821 3632 6.687081 AACGTGGTTTCAGAATTGAACTAA 57.313 33.333 0.00 0.00 42.79 2.24
1822 3633 6.877611 ACGTGGTTTCAGAATTGAACTAAT 57.122 33.333 0.00 0.00 42.79 1.73
1823 3634 7.972832 ACGTGGTTTCAGAATTGAACTAATA 57.027 32.000 0.00 0.00 42.79 0.98
1824 3635 7.803724 ACGTGGTTTCAGAATTGAACTAATAC 58.196 34.615 0.00 0.00 42.79 1.89
1825 3636 7.094933 ACGTGGTTTCAGAATTGAACTAATACC 60.095 37.037 0.00 0.00 42.79 2.73
1826 3637 7.241376 GTGGTTTCAGAATTGAACTAATACCG 58.759 38.462 0.00 0.00 42.79 4.02
1876 3698 0.165511 CGCTCTGAAAACTCTGCTGC 59.834 55.000 0.00 0.00 0.00 5.25
1882 3704 1.330521 TGAAAACTCTGCTGCGTGTTC 59.669 47.619 9.11 9.11 0.00 3.18
2585 4417 0.807496 CCTTTTCAGTGCTGCTAGGC 59.193 55.000 0.00 0.00 0.00 3.93
2621 4455 6.649557 AGGAAATAACGACGTTTGAAATCTCT 59.350 34.615 19.71 4.44 0.00 3.10
2647 4481 7.039313 ACAAGTAATTTTGTCTTTGGAGGTC 57.961 36.000 0.00 0.00 36.60 3.85
2776 4873 8.953313 CATATGATAAGCAAAATCCTATCTGCA 58.047 33.333 0.00 0.00 37.26 4.41
2942 5659 8.319143 TGTCGGAAACTTTAGAAAATTCCTAG 57.681 34.615 13.32 0.00 37.89 3.02
3000 5718 3.222603 CAAAGGCAACCCACTACTTTCT 58.777 45.455 0.00 0.00 37.17 2.52
3020 5738 4.569943 TCTAGAGCTTGTCATTTGTGGAC 58.430 43.478 0.00 0.00 35.83 4.02
3021 5739 2.508526 AGAGCTTGTCATTTGTGGACC 58.491 47.619 0.00 0.00 34.36 4.46
3022 5740 2.158623 AGAGCTTGTCATTTGTGGACCA 60.159 45.455 0.00 0.00 34.36 4.02
3023 5741 1.956477 AGCTTGTCATTTGTGGACCAC 59.044 47.619 18.28 18.28 34.36 4.16
3024 5742 1.956477 GCTTGTCATTTGTGGACCACT 59.044 47.619 24.81 2.35 35.11 4.00
3025 5743 3.146066 GCTTGTCATTTGTGGACCACTA 58.854 45.455 24.81 15.42 35.11 2.74
3026 5744 3.058224 GCTTGTCATTTGTGGACCACTAC 60.058 47.826 24.81 14.63 35.11 2.73
3027 5745 4.389374 CTTGTCATTTGTGGACCACTACT 58.611 43.478 24.81 9.56 35.11 2.57
3028 5746 4.431416 TGTCATTTGTGGACCACTACTT 57.569 40.909 24.81 5.61 35.11 2.24
3029 5747 4.787551 TGTCATTTGTGGACCACTACTTT 58.212 39.130 24.81 3.18 35.11 2.66
3030 5748 4.819630 TGTCATTTGTGGACCACTACTTTC 59.180 41.667 24.81 11.98 35.11 2.62
3031 5749 5.063880 GTCATTTGTGGACCACTACTTTCT 58.936 41.667 24.81 0.99 35.11 2.52
3032 5750 6.183361 TGTCATTTGTGGACCACTACTTTCTA 60.183 38.462 24.81 2.36 35.11 2.10
3033 5751 6.369065 GTCATTTGTGGACCACTACTTTCTAG 59.631 42.308 24.81 6.15 35.11 2.43
3034 5752 6.269077 TCATTTGTGGACCACTACTTTCTAGA 59.731 38.462 24.81 8.16 35.11 2.43
3035 5753 5.723672 TTGTGGACCACTACTTTCTAGAG 57.276 43.478 24.81 0.00 35.11 2.43
3036 5754 4.737578 TGTGGACCACTACTTTCTAGAGT 58.262 43.478 24.81 0.00 35.11 3.24
3037 5755 5.145564 TGTGGACCACTACTTTCTAGAGTT 58.854 41.667 24.81 0.00 35.11 3.01
3038 5756 5.601313 TGTGGACCACTACTTTCTAGAGTTT 59.399 40.000 24.81 0.00 35.11 2.66
3039 5757 5.927115 GTGGACCACTACTTTCTAGAGTTTG 59.073 44.000 17.84 0.00 0.00 2.93
3040 5758 5.601313 TGGACCACTACTTTCTAGAGTTTGT 59.399 40.000 0.00 0.00 0.00 2.83
3041 5759 6.157904 GGACCACTACTTTCTAGAGTTTGTC 58.842 44.000 0.00 0.00 0.00 3.18
3042 5760 6.239232 GGACCACTACTTTCTAGAGTTTGTCA 60.239 42.308 0.00 0.00 29.83 3.58
3043 5761 7.304497 ACCACTACTTTCTAGAGTTTGTCAT 57.696 36.000 0.00 0.00 0.00 3.06
3044 5762 7.736893 ACCACTACTTTCTAGAGTTTGTCATT 58.263 34.615 0.00 0.00 0.00 2.57
3045 5763 8.211629 ACCACTACTTTCTAGAGTTTGTCATTT 58.788 33.333 0.00 0.00 0.00 2.32
3046 5764 8.499162 CCACTACTTTCTAGAGTTTGTCATTTG 58.501 37.037 0.00 0.00 0.00 2.32
3047 5765 9.046296 CACTACTTTCTAGAGTTTGTCATTTGT 57.954 33.333 0.00 0.00 0.00 2.83
3048 5766 9.046296 ACTACTTTCTAGAGTTTGTCATTTGTG 57.954 33.333 0.00 0.00 0.00 3.33
3049 5767 7.264373 ACTTTCTAGAGTTTGTCATTTGTGG 57.736 36.000 0.00 0.00 0.00 4.17
3050 5768 7.054124 ACTTTCTAGAGTTTGTCATTTGTGGA 58.946 34.615 0.00 0.00 0.00 4.02
3102 5820 8.264347 TGTAGAGCATATGGTTGATAACTTCAA 58.736 33.333 9.14 0.00 42.09 2.69
3160 5878 5.508200 TTGGACCAATACAAACAGTTGTC 57.492 39.130 1.69 0.00 45.00 3.18
3212 5930 9.046296 TGTTGTTCTCATAACTTCTTCTTCTTC 57.954 33.333 0.00 0.00 0.00 2.87
3213 5931 9.267084 GTTGTTCTCATAACTTCTTCTTCTTCT 57.733 33.333 0.00 0.00 0.00 2.85
3216 5934 9.705290 GTTCTCATAACTTCTTCTTCTTCTCTT 57.295 33.333 0.00 0.00 0.00 2.85
3692 7376 2.198827 TTTTCCATCGACACTGGCAT 57.801 45.000 0.00 0.00 33.56 4.40
3904 7595 6.757010 GGCGAATAGATTTGAACTTCTACTCA 59.243 38.462 0.00 0.00 0.00 3.41
3913 7604 8.697507 ATTTGAACTTCTACTCAATTTGGTCT 57.302 30.769 0.00 0.00 31.85 3.85
4018 7709 8.800370 TTGTCCAATTAATTAGACATGTAGCA 57.200 30.769 23.98 10.20 38.02 3.49
4065 7757 2.092838 CGAATTCGAGTTGGTCTTCAGC 59.907 50.000 23.29 0.00 43.02 4.26
4072 7764 3.120408 CGAGTTGGTCTTCAGCTGAAATG 60.120 47.826 28.16 18.32 37.05 2.32
4152 7896 7.707624 TTGAATGTGGAAGAAGCTATTGATT 57.292 32.000 0.00 0.00 0.00 2.57
4153 7897 7.325660 TGAATGTGGAAGAAGCTATTGATTC 57.674 36.000 0.00 0.00 38.74 2.52
4154 7898 6.319658 TGAATGTGGAAGAAGCTATTGATTCC 59.680 38.462 1.47 7.87 39.21 3.01
4155 7899 4.526970 TGTGGAAGAAGCTATTGATTCCC 58.473 43.478 1.47 0.00 39.21 3.97
4156 7900 3.885901 GTGGAAGAAGCTATTGATTCCCC 59.114 47.826 1.47 4.74 39.21 4.81
4157 7901 3.117512 TGGAAGAAGCTATTGATTCCCCC 60.118 47.826 1.47 4.43 39.21 5.40
4158 7902 3.139211 GGAAGAAGCTATTGATTCCCCCT 59.861 47.826 1.47 0.00 39.21 4.79
4159 7903 4.386873 GGAAGAAGCTATTGATTCCCCCTT 60.387 45.833 1.47 0.00 39.21 3.95
4160 7904 4.176120 AGAAGCTATTGATTCCCCCTTG 57.824 45.455 1.47 0.00 39.21 3.61
4161 7905 3.788142 AGAAGCTATTGATTCCCCCTTGA 59.212 43.478 1.47 0.00 39.21 3.02
4162 7906 4.418190 AGAAGCTATTGATTCCCCCTTGAT 59.582 41.667 1.47 0.00 39.21 2.57
4163 7907 4.821532 AGCTATTGATTCCCCCTTGATT 57.178 40.909 0.00 0.00 0.00 2.57
4865 8765 7.219484 CTCTGGAAATTTTAAGAGCTTCCAA 57.781 36.000 14.55 5.08 43.67 3.53
5042 8942 2.664402 ATGGTATTGCTGTCCCATCC 57.336 50.000 0.00 0.00 32.20 3.51
5147 9047 1.584380 CTGGCCTCTTTGCACTGCTC 61.584 60.000 3.32 0.00 0.00 4.26
5459 9359 2.030457 CGTTCATGCGTTAAGGATCACC 59.970 50.000 0.00 0.00 0.00 4.02
5561 9461 2.503765 TGTGTTGGTTCTTCTGAGTGGA 59.496 45.455 0.00 0.00 0.00 4.02
5624 9524 0.106769 TGCTCAGAAGGTTTGGTGCA 60.107 50.000 0.00 0.00 0.00 4.57
5856 9759 3.826157 GGTGAGACCTCTCTATCTCCATG 59.174 52.174 4.00 0.00 43.25 3.66
5872 9778 9.599056 CTATCTCCATGATATCCATACATACCT 57.401 37.037 0.00 0.00 37.07 3.08
5895 9801 9.712305 ACCTCAGATCCTTAAATATCGTAATTG 57.288 33.333 0.00 0.00 0.00 2.32
5896 9802 8.660373 CCTCAGATCCTTAAATATCGTAATTGC 58.340 37.037 0.00 0.00 0.00 3.56
5897 9803 9.208022 CTCAGATCCTTAAATATCGTAATTGCA 57.792 33.333 0.00 0.00 0.00 4.08
5898 9804 8.988934 TCAGATCCTTAAATATCGTAATTGCAC 58.011 33.333 0.00 0.00 0.00 4.57
5899 9805 8.773645 CAGATCCTTAAATATCGTAATTGCACA 58.226 33.333 0.00 0.00 0.00 4.57
5921 9829 7.063662 GCACATTCTTTGTTTGCATGATATGAA 59.936 33.333 0.00 0.00 36.00 2.57
5936 9844 5.059161 TGATATGAAGTTCATACTGCAGCC 58.941 41.667 24.43 10.46 43.25 4.85
5937 9845 2.857186 TGAAGTTCATACTGCAGCCA 57.143 45.000 15.27 1.58 34.88 4.75
5941 9849 5.439721 TGAAGTTCATACTGCAGCCATATT 58.560 37.500 15.27 0.00 34.88 1.28
5942 9850 5.528690 TGAAGTTCATACTGCAGCCATATTC 59.471 40.000 15.27 10.22 34.88 1.75
5943 9851 5.301835 AGTTCATACTGCAGCCATATTCT 57.698 39.130 15.27 1.80 31.99 2.40
5944 9852 5.061853 AGTTCATACTGCAGCCATATTCTG 58.938 41.667 15.27 0.00 31.99 3.02
5948 9856 6.772605 TCATACTGCAGCCATATTCTGTATT 58.227 36.000 15.27 0.00 34.21 1.89
5950 9858 5.762825 ACTGCAGCCATATTCTGTATTTG 57.237 39.130 15.27 0.00 34.21 2.32
5952 9860 5.530171 ACTGCAGCCATATTCTGTATTTGAG 59.470 40.000 15.27 0.00 34.21 3.02
5954 9862 5.887598 TGCAGCCATATTCTGTATTTGAGTT 59.112 36.000 0.00 0.00 34.21 3.01
5974 9886 9.747898 TTGAGTTCAATTATAGGGTGTTAACAT 57.252 29.630 12.26 0.00 0.00 2.71
6035 9948 0.741221 GGATTCTCACCAGGCACGAC 60.741 60.000 0.00 0.00 0.00 4.34
6239 10154 4.520492 AGCAGTCGAGTGGATTTCATTTTT 59.480 37.500 21.39 0.00 0.00 1.94
6269 10184 3.893326 GGGGGAGTGGATTTCATTTTG 57.107 47.619 0.00 0.00 0.00 2.44
6270 10185 2.501316 GGGGGAGTGGATTTCATTTTGG 59.499 50.000 0.00 0.00 0.00 3.28
6324 10239 4.499183 CTCTCCTTGTCAGTACATGTTCC 58.501 47.826 2.30 0.00 34.97 3.62
6557 10474 0.927537 CTCGTTCGTTGCTGTCACAA 59.072 50.000 0.00 0.00 0.00 3.33
6560 10477 0.317020 GTTCGTTGCTGTCACAAGCC 60.317 55.000 0.00 0.00 42.83 4.35
6561 10478 0.746204 TTCGTTGCTGTCACAAGCCA 60.746 50.000 0.00 0.00 42.83 4.75
6563 10480 1.159713 CGTTGCTGTCACAAGCCAGA 61.160 55.000 0.00 0.00 42.83 3.86
6565 10482 1.405105 GTTGCTGTCACAAGCCAGAAA 59.595 47.619 0.00 0.00 42.83 2.52
6567 10484 2.309613 TGCTGTCACAAGCCAGAAATT 58.690 42.857 0.00 0.00 42.83 1.82
6568 10485 2.294233 TGCTGTCACAAGCCAGAAATTC 59.706 45.455 0.00 0.00 42.83 2.17
6569 10486 2.666619 GCTGTCACAAGCCAGAAATTCG 60.667 50.000 0.00 0.00 37.20 3.34
6570 10487 1.266718 TGTCACAAGCCAGAAATTCGC 59.733 47.619 0.00 0.00 0.00 4.70
6572 10489 0.454957 CACAAGCCAGAAATTCGCCG 60.455 55.000 0.00 0.00 0.00 6.46
6573 10490 1.137404 CAAGCCAGAAATTCGCCGG 59.863 57.895 0.00 0.00 0.00 6.13
6574 10491 1.303317 AAGCCAGAAATTCGCCGGT 60.303 52.632 1.90 0.00 0.00 5.28
6575 10492 0.035820 AAGCCAGAAATTCGCCGGTA 60.036 50.000 1.90 0.00 0.00 4.02
6576 10493 0.180406 AGCCAGAAATTCGCCGGTAT 59.820 50.000 1.90 0.00 0.00 2.73
6577 10494 0.586802 GCCAGAAATTCGCCGGTATC 59.413 55.000 1.90 0.00 0.00 2.24
6583 10518 1.675552 AATTCGCCGGTATCCCTTTG 58.324 50.000 1.90 0.00 0.00 2.77
6621 10556 1.513158 CCTACTGCTGACCTGACCG 59.487 63.158 0.00 0.00 0.00 4.79
6626 10561 4.373116 GCTGACCTGACCGCCGAA 62.373 66.667 0.00 0.00 0.00 4.30
6677 10642 1.303317 CGGAAAGGGGGAACAGTGG 60.303 63.158 0.00 0.00 0.00 4.00
6685 10650 2.270986 GGGAACAGTGGCAGGCAAG 61.271 63.158 0.00 0.00 0.00 4.01
6702 10667 3.534056 GGCACCATGATGCTGCCC 61.534 66.667 18.78 3.48 44.15 5.36
6705 10670 2.125326 CACCATGATGCTGCCCCTG 61.125 63.158 0.00 0.00 0.00 4.45
6723 10688 1.246056 TGTTGATTCCAGCAGCAGGC 61.246 55.000 0.00 0.00 45.30 4.85
6742 10707 1.725641 CGTGGTCATTGCTTGCTAGA 58.274 50.000 0.00 0.00 0.00 2.43
6743 10708 1.662629 CGTGGTCATTGCTTGCTAGAG 59.337 52.381 0.00 0.00 0.00 2.43
6744 10709 2.704572 GTGGTCATTGCTTGCTAGAGT 58.295 47.619 0.00 0.00 0.00 3.24
6745 10710 3.676049 CGTGGTCATTGCTTGCTAGAGTA 60.676 47.826 0.00 0.00 0.00 2.59
6746 10711 3.868077 GTGGTCATTGCTTGCTAGAGTAG 59.132 47.826 0.00 0.00 0.00 2.57
6747 10712 3.515502 TGGTCATTGCTTGCTAGAGTAGT 59.484 43.478 0.00 0.00 0.00 2.73
6748 10713 4.020218 TGGTCATTGCTTGCTAGAGTAGTT 60.020 41.667 0.00 0.00 0.00 2.24
6749 10714 4.331168 GGTCATTGCTTGCTAGAGTAGTTG 59.669 45.833 0.00 0.00 0.00 3.16
6750 10715 3.935203 TCATTGCTTGCTAGAGTAGTTGC 59.065 43.478 0.00 0.00 0.00 4.17
6751 10716 2.386661 TGCTTGCTAGAGTAGTTGCC 57.613 50.000 0.00 0.00 0.00 4.52
6752 10717 1.623311 TGCTTGCTAGAGTAGTTGCCA 59.377 47.619 0.00 0.00 0.00 4.92
6753 10718 2.003301 GCTTGCTAGAGTAGTTGCCAC 58.997 52.381 0.00 0.00 0.00 5.01
6766 10731 4.803426 GCCACTGTCTCTCGCCGG 62.803 72.222 0.00 0.00 0.00 6.13
6773 10738 0.607217 TGTCTCTCGCCGGTAGTTGA 60.607 55.000 1.90 2.26 0.00 3.18
6779 10744 2.232941 TCTCGCCGGTAGTTGATTTTCT 59.767 45.455 1.90 0.00 0.00 2.52
6781 10746 4.082081 TCTCGCCGGTAGTTGATTTTCTTA 60.082 41.667 1.90 0.00 0.00 2.10
6847 10824 5.183904 GGAACTTTATGCACAAACTCCTCAT 59.816 40.000 6.59 0.00 0.00 2.90
6855 10832 3.005155 GCACAAACTCCTCATCAGCTTTT 59.995 43.478 0.00 0.00 0.00 2.27
6858 10835 1.831580 ACTCCTCATCAGCTTTTGGC 58.168 50.000 0.00 0.00 42.19 4.52
6868 10845 3.629858 GCTTTTGGCGCTAGGATTG 57.370 52.632 7.64 0.00 0.00 2.67
6872 10849 3.429410 GCTTTTGGCGCTAGGATTGAATT 60.429 43.478 7.64 0.00 0.00 2.17
6873 10850 4.747810 CTTTTGGCGCTAGGATTGAATTT 58.252 39.130 7.64 0.00 0.00 1.82
6880 10857 6.096141 TGGCGCTAGGATTGAATTTGATTTTA 59.904 34.615 7.64 0.00 0.00 1.52
6891 10869 8.537049 TTGAATTTGATTTTATGCTGTGGAAG 57.463 30.769 0.00 0.00 0.00 3.46
6921 10899 2.543031 GCTTTTGGTCGGTTTGTTCTCC 60.543 50.000 0.00 0.00 0.00 3.71
6929 10907 1.739371 CGGTTTGTTCTCCCCGATCTC 60.739 57.143 0.00 0.00 43.01 2.75
6944 10922 2.420642 GATCTCTTGTGTCAGCTGCAA 58.579 47.619 9.47 6.96 0.00 4.08
6945 10923 1.875009 TCTCTTGTGTCAGCTGCAAG 58.125 50.000 20.39 20.39 40.47 4.01
6947 10925 0.469494 TCTTGTGTCAGCTGCAAGGA 59.531 50.000 23.81 14.33 39.80 3.36
6948 10926 1.072806 TCTTGTGTCAGCTGCAAGGAT 59.927 47.619 23.81 0.00 39.80 3.24
6949 10927 1.467734 CTTGTGTCAGCTGCAAGGATC 59.532 52.381 19.28 6.68 36.79 3.36
6950 10928 0.671472 TGTGTCAGCTGCAAGGATCG 60.671 55.000 9.47 0.00 0.00 3.69
6951 10929 1.742880 TGTCAGCTGCAAGGATCGC 60.743 57.895 9.47 0.00 0.00 4.58
6952 10930 1.449246 GTCAGCTGCAAGGATCGCT 60.449 57.895 9.47 0.00 0.00 4.93
6953 10931 3.099438 CAGCTGCAAGGATCGCTG 58.901 61.111 0.00 8.73 43.10 5.18
6954 10932 2.984623 AGCTGCAAGGATCGCTGA 59.015 55.556 1.02 0.00 0.00 4.26
6968 10946 0.806868 CGCTGAGCCATCATGTTTGT 59.193 50.000 0.00 0.00 34.12 2.83
7020 11003 3.665745 ACAATGAATGTGCTTTGGGAC 57.334 42.857 0.00 0.00 41.93 4.46
7021 11004 3.233507 ACAATGAATGTGCTTTGGGACT 58.766 40.909 0.00 0.00 41.93 3.85
7022 11005 3.642848 ACAATGAATGTGCTTTGGGACTT 59.357 39.130 0.00 0.00 41.93 3.01
7024 11007 1.962807 TGAATGTGCTTTGGGACTTGG 59.037 47.619 0.00 0.00 34.78 3.61
7026 11009 0.482446 ATGTGCTTTGGGACTTGGGA 59.518 50.000 0.00 0.00 34.78 4.37
7027 11010 0.178992 TGTGCTTTGGGACTTGGGAG 60.179 55.000 0.00 0.00 34.78 4.30
7028 11011 0.110486 GTGCTTTGGGACTTGGGAGA 59.890 55.000 0.00 0.00 0.00 3.71
7029 11012 0.401738 TGCTTTGGGACTTGGGAGAG 59.598 55.000 0.00 0.00 0.00 3.20
7030 11013 0.693049 GCTTTGGGACTTGGGAGAGA 59.307 55.000 0.00 0.00 0.00 3.10
7031 11014 1.339535 GCTTTGGGACTTGGGAGAGAG 60.340 57.143 0.00 0.00 0.00 3.20
7032 11015 2.260822 CTTTGGGACTTGGGAGAGAGA 58.739 52.381 0.00 0.00 0.00 3.10
7033 11016 2.649742 TTGGGACTTGGGAGAGAGAT 57.350 50.000 0.00 0.00 0.00 2.75
7034 11017 2.649742 TGGGACTTGGGAGAGAGATT 57.350 50.000 0.00 0.00 0.00 2.40
7035 11018 2.191400 TGGGACTTGGGAGAGAGATTG 58.809 52.381 0.00 0.00 0.00 2.67
7037 11020 2.433970 GGGACTTGGGAGAGAGATTGAG 59.566 54.545 0.00 0.00 0.00 3.02
7040 11023 3.373830 ACTTGGGAGAGAGATTGAGAGG 58.626 50.000 0.00 0.00 0.00 3.69
7041 11024 2.468301 TGGGAGAGAGATTGAGAGGG 57.532 55.000 0.00 0.00 0.00 4.30
7042 11025 1.933051 TGGGAGAGAGATTGAGAGGGA 59.067 52.381 0.00 0.00 0.00 4.20
7043 11026 2.316067 TGGGAGAGAGATTGAGAGGGAA 59.684 50.000 0.00 0.00 0.00 3.97
7044 11027 3.246130 TGGGAGAGAGATTGAGAGGGAAA 60.246 47.826 0.00 0.00 0.00 3.13
7045 11028 3.777522 GGGAGAGAGATTGAGAGGGAAAA 59.222 47.826 0.00 0.00 0.00 2.29
7046 11029 4.226168 GGGAGAGAGATTGAGAGGGAAAAA 59.774 45.833 0.00 0.00 0.00 1.94
7069 11052 7.651027 AAAAAGGGAAGGATTCTGATGTATG 57.349 36.000 0.00 0.00 46.56 2.39
7070 11053 4.989875 AGGGAAGGATTCTGATGTATGG 57.010 45.455 0.00 0.00 46.56 2.74
7077 11060 2.418368 TTCTGATGTATGGGTGTGGC 57.582 50.000 0.00 0.00 0.00 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 1.284785 TCACCATCCCCTAGCAAAAGG 59.715 52.381 0.00 0.00 36.30 3.11
40 41 2.239654 TCTCACCATCCCCTAGCAAAAG 59.760 50.000 0.00 0.00 0.00 2.27
43 44 1.770658 CATCTCACCATCCCCTAGCAA 59.229 52.381 0.00 0.00 0.00 3.91
46 47 1.974236 GTCCATCTCACCATCCCCTAG 59.026 57.143 0.00 0.00 0.00 3.02
57 58 0.450583 GCACGTACGAGTCCATCTCA 59.549 55.000 24.41 0.00 42.88 3.27
58 59 0.589229 CGCACGTACGAGTCCATCTC 60.589 60.000 24.41 0.00 39.62 2.75
85 87 4.200874 AGATCACTGTTCCCTACTACGAG 58.799 47.826 0.00 0.00 0.00 4.18
87 89 4.985538 AAGATCACTGTTCCCTACTACG 57.014 45.455 0.00 0.00 0.00 3.51
88 90 6.406737 GGGTTAAGATCACTGTTCCCTACTAC 60.407 46.154 0.00 0.00 31.89 2.73
90 92 4.470304 GGGTTAAGATCACTGTTCCCTACT 59.530 45.833 0.00 0.00 31.89 2.57
92 94 4.431378 TGGGTTAAGATCACTGTTCCCTA 58.569 43.478 0.00 0.00 33.95 3.53
95 97 4.589908 ACATGGGTTAAGATCACTGTTCC 58.410 43.478 0.00 0.00 0.00 3.62
129 131 0.551879 CGAGGAGAGGAGAAGGGGTA 59.448 60.000 0.00 0.00 0.00 3.69
130 132 1.215679 TCGAGGAGAGGAGAAGGGGT 61.216 60.000 0.00 0.00 0.00 4.95
131 133 0.753848 GTCGAGGAGAGGAGAAGGGG 60.754 65.000 0.00 0.00 0.00 4.79
132 134 0.257616 AGTCGAGGAGAGGAGAAGGG 59.742 60.000 0.00 0.00 0.00 3.95
133 135 1.748493 CAAGTCGAGGAGAGGAGAAGG 59.252 57.143 0.00 0.00 0.00 3.46
137 139 3.488384 CGAAATCAAGTCGAGGAGAGGAG 60.488 52.174 0.00 0.00 41.02 3.69
177 185 4.024670 GTCTCTTGTATGGGTCTGGTACT 58.975 47.826 0.00 0.00 0.00 2.73
178 186 3.767673 TGTCTCTTGTATGGGTCTGGTAC 59.232 47.826 0.00 0.00 0.00 3.34
179 187 4.023980 CTGTCTCTTGTATGGGTCTGGTA 58.976 47.826 0.00 0.00 0.00 3.25
180 188 2.834549 CTGTCTCTTGTATGGGTCTGGT 59.165 50.000 0.00 0.00 0.00 4.00
228 236 1.668101 GGCGAGAGAGGGGTACACTG 61.668 65.000 0.00 0.00 0.00 3.66
322 336 4.397417 AGAGAAAATATGTGAAGCTGTGGC 59.603 41.667 0.00 0.00 39.06 5.01
323 337 6.373774 AGAAGAGAAAATATGTGAAGCTGTGG 59.626 38.462 0.00 0.00 0.00 4.17
324 338 7.375106 AGAAGAGAAAATATGTGAAGCTGTG 57.625 36.000 0.00 0.00 0.00 3.66
325 339 7.992754 AAGAAGAGAAAATATGTGAAGCTGT 57.007 32.000 0.00 0.00 0.00 4.40
369 389 3.185246 ACCGAATTATCAGGTGCTCTG 57.815 47.619 1.94 1.94 44.68 3.35
532 2247 2.925170 AGACAGCGGACAAGGGCT 60.925 61.111 0.00 0.00 40.90 5.19
533 2248 2.435059 GAGACAGCGGACAAGGGC 60.435 66.667 0.00 0.00 0.00 5.19
534 2249 1.374758 GTGAGACAGCGGACAAGGG 60.375 63.158 0.00 0.00 0.00 3.95
537 2252 1.007734 GACGTGAGACAGCGGACAA 60.008 57.895 0.00 0.00 0.00 3.18
538 2253 2.643272 GACGTGAGACAGCGGACA 59.357 61.111 0.00 0.00 0.00 4.02
540 2255 4.400109 GCGACGTGAGACAGCGGA 62.400 66.667 0.00 0.00 0.00 5.54
543 2258 3.474034 GCAGCGACGTGAGACAGC 61.474 66.667 0.00 0.00 0.00 4.40
544 2259 3.168604 CGCAGCGACGTGAGACAG 61.169 66.667 9.98 0.00 0.00 3.51
585 2322 0.036671 GGAAACGGAAGGACCATCGT 60.037 55.000 0.00 0.00 38.90 3.73
592 2329 1.125093 TGGAGCAGGAAACGGAAGGA 61.125 55.000 0.00 0.00 0.00 3.36
650 2392 9.467796 TTTTTCTGGTGGAATTTATTTGGTTTT 57.532 25.926 0.00 0.00 33.53 2.43
694 2437 2.018355 TGTTGGGGCTGACTACTACA 57.982 50.000 0.00 0.00 0.00 2.74
697 2440 3.306472 TTTTTGTTGGGGCTGACTACT 57.694 42.857 0.00 0.00 0.00 2.57
714 2457 6.148645 GGCGATTTTTCTCTCTCTCTCTTTTT 59.851 38.462 0.00 0.00 0.00 1.94
715 2458 5.641636 GGCGATTTTTCTCTCTCTCTCTTTT 59.358 40.000 0.00 0.00 0.00 2.27
716 2459 5.046663 AGGCGATTTTTCTCTCTCTCTCTTT 60.047 40.000 0.00 0.00 0.00 2.52
717 2460 4.466015 AGGCGATTTTTCTCTCTCTCTCTT 59.534 41.667 0.00 0.00 0.00 2.85
718 2461 4.023291 AGGCGATTTTTCTCTCTCTCTCT 58.977 43.478 0.00 0.00 0.00 3.10
719 2462 4.111916 CAGGCGATTTTTCTCTCTCTCTC 58.888 47.826 0.00 0.00 0.00 3.20
720 2463 3.513515 ACAGGCGATTTTTCTCTCTCTCT 59.486 43.478 0.00 0.00 0.00 3.10
721 2464 3.855858 ACAGGCGATTTTTCTCTCTCTC 58.144 45.455 0.00 0.00 0.00 3.20
722 2465 3.259374 TGACAGGCGATTTTTCTCTCTCT 59.741 43.478 0.00 0.00 0.00 3.10
723 2466 3.589988 TGACAGGCGATTTTTCTCTCTC 58.410 45.455 0.00 0.00 0.00 3.20
724 2467 3.685139 TGACAGGCGATTTTTCTCTCT 57.315 42.857 0.00 0.00 0.00 3.10
725 2468 4.214332 ACTTTGACAGGCGATTTTTCTCTC 59.786 41.667 0.00 0.00 0.00 3.20
726 2469 4.137543 ACTTTGACAGGCGATTTTTCTCT 58.862 39.130 0.00 0.00 0.00 3.10
727 2470 4.024048 TGACTTTGACAGGCGATTTTTCTC 60.024 41.667 0.00 0.00 29.50 2.87
728 2471 3.882888 TGACTTTGACAGGCGATTTTTCT 59.117 39.130 0.00 0.00 29.50 2.52
729 2472 3.975035 GTGACTTTGACAGGCGATTTTTC 59.025 43.478 0.00 0.00 29.50 2.29
730 2473 3.548014 CGTGACTTTGACAGGCGATTTTT 60.548 43.478 0.00 0.00 29.50 1.94
731 2474 2.032030 CGTGACTTTGACAGGCGATTTT 60.032 45.455 0.00 0.00 29.50 1.82
732 2475 1.531149 CGTGACTTTGACAGGCGATTT 59.469 47.619 0.00 0.00 29.50 2.17
733 2476 1.148310 CGTGACTTTGACAGGCGATT 58.852 50.000 0.00 0.00 29.50 3.34
734 2477 0.033504 ACGTGACTTTGACAGGCGAT 59.966 50.000 0.00 0.00 29.50 4.58
735 2478 0.874175 CACGTGACTTTGACAGGCGA 60.874 55.000 10.90 0.00 29.50 5.54
736 2479 1.564622 CACGTGACTTTGACAGGCG 59.435 57.895 10.90 0.00 29.50 5.52
737 2480 0.531974 TCCACGTGACTTTGACAGGC 60.532 55.000 19.30 0.00 0.00 4.85
738 2481 1.597663 GTTCCACGTGACTTTGACAGG 59.402 52.381 19.30 0.00 0.00 4.00
768 2511 4.094476 AGGAAAATCTTACCTCCGTCTGA 58.906 43.478 0.00 0.00 32.91 3.27
788 2531 6.300354 ACGCGAAATATAATCTGGAAAAGG 57.700 37.500 15.93 0.00 0.00 3.11
789 2532 8.294341 TCTACGCGAAATATAATCTGGAAAAG 57.706 34.615 15.93 0.00 0.00 2.27
796 2539 8.008902 GCTTCTTTCTACGCGAAATATAATCT 57.991 34.615 15.93 0.00 40.62 2.40
810 2553 1.696832 CCAGCGGCGCTTCTTTCTAC 61.697 60.000 34.51 0.00 36.40 2.59
812 2555 2.167398 TACCAGCGGCGCTTCTTTCT 62.167 55.000 34.51 12.87 36.40 2.52
813 2556 1.740296 TACCAGCGGCGCTTCTTTC 60.740 57.895 34.51 0.00 36.40 2.62
814 2557 2.033194 GTACCAGCGGCGCTTCTTT 61.033 57.895 34.51 18.38 36.40 2.52
825 2580 1.077716 AGGCCCAAATCGTACCAGC 60.078 57.895 0.00 0.00 0.00 4.85
829 2584 1.541379 AAACCAGGCCCAAATCGTAC 58.459 50.000 0.00 0.00 0.00 3.67
845 2600 5.695424 AGGAAGGGTACTGGAGATTAAAC 57.305 43.478 0.00 0.00 0.00 2.01
856 2611 8.666821 AGACAGTAAATAAAAAGGAAGGGTACT 58.333 33.333 0.00 0.00 0.00 2.73
859 2614 6.653740 CGAGACAGTAAATAAAAAGGAAGGGT 59.346 38.462 0.00 0.00 0.00 4.34
877 2633 1.669158 CGAGTGAAAGCGCGAGACAG 61.669 60.000 12.10 0.00 33.64 3.51
943 2699 2.186384 CGCTTGCCTCCTCTCCTG 59.814 66.667 0.00 0.00 0.00 3.86
989 2750 0.729690 GCCGTCCATTCTTGCTTCTC 59.270 55.000 0.00 0.00 0.00 2.87
990 2751 1.021390 CGCCGTCCATTCTTGCTTCT 61.021 55.000 0.00 0.00 0.00 2.85
1014 2775 4.179579 GAGTTGGAATGCGGCGCC 62.180 66.667 30.82 19.07 0.00 6.53
1085 2846 4.096532 TCTCTATGTCGTAGTTGAAGCTGG 59.903 45.833 0.00 0.00 0.00 4.85
1407 3172 5.409826 AGACAAAAAGGATCACGCTTTCTAG 59.590 40.000 0.00 0.00 0.00 2.43
1408 3173 5.305585 AGACAAAAAGGATCACGCTTTCTA 58.694 37.500 0.00 0.00 0.00 2.10
1409 3174 4.137543 AGACAAAAAGGATCACGCTTTCT 58.862 39.130 0.00 0.00 0.00 2.52
1436 3201 5.395486 GCGTTCTTTAAAAAGTACAGTGCTG 59.605 40.000 11.26 0.00 36.47 4.41
1438 3203 4.374828 CGCGTTCTTTAAAAAGTACAGTGC 59.625 41.667 0.00 6.72 36.47 4.40
1439 3204 4.901881 CCGCGTTCTTTAAAAAGTACAGTG 59.098 41.667 4.92 9.89 36.47 3.66
1440 3205 4.810491 TCCGCGTTCTTTAAAAAGTACAGT 59.190 37.500 4.92 0.00 36.47 3.55
1441 3206 5.333046 TCCGCGTTCTTTAAAAAGTACAG 57.667 39.130 4.92 5.76 36.47 2.74
1442 3207 5.927954 ATCCGCGTTCTTTAAAAAGTACA 57.072 34.783 4.92 0.00 36.47 2.90
1443 3208 6.952083 CAGTATCCGCGTTCTTTAAAAAGTAC 59.048 38.462 4.92 2.81 37.31 2.73
1444 3209 6.646240 ACAGTATCCGCGTTCTTTAAAAAGTA 59.354 34.615 4.92 0.00 37.31 2.24
1445 3210 5.467735 ACAGTATCCGCGTTCTTTAAAAAGT 59.532 36.000 4.92 0.00 37.31 2.66
1446 3211 5.923665 ACAGTATCCGCGTTCTTTAAAAAG 58.076 37.500 4.92 0.00 37.36 2.27
1447 3212 5.466058 TGACAGTATCCGCGTTCTTTAAAAA 59.534 36.000 4.92 0.00 0.00 1.94
1508 3300 0.967380 AGAAAAATCCTGGCGCTGGG 60.967 55.000 7.64 10.25 0.00 4.45
1512 3304 2.723124 TCAAAGAAAAATCCTGGCGC 57.277 45.000 0.00 0.00 0.00 6.53
1530 3322 7.466050 CGAAGTACATTCCTAGGATTGCTTTTC 60.466 40.741 26.52 23.19 34.10 2.29
1531 3323 6.316390 CGAAGTACATTCCTAGGATTGCTTTT 59.684 38.462 26.52 19.13 34.10 2.27
1534 3326 4.649674 TCGAAGTACATTCCTAGGATTGCT 59.350 41.667 26.52 16.83 34.10 3.91
1571 3366 2.809174 TGCAATCGGCTCGACACG 60.809 61.111 0.00 0.00 45.15 4.49
1632 3440 3.074412 CTGCTCGTTTGTGTAAAGGGAT 58.926 45.455 0.00 0.00 33.62 3.85
1636 3444 5.845953 CACATTACTGCTCGTTTGTGTAAAG 59.154 40.000 11.02 0.00 35.50 1.85
1773 3584 9.981114 TTATTTCTTTTCCCTTCAGAATTCAAC 57.019 29.630 8.44 0.00 0.00 3.18
1793 3604 7.860872 AGTTCAATTCTGAAACCACGTTATTTC 59.139 33.333 12.40 12.40 43.18 2.17
1814 3625 9.060347 CCTACTGAAGTATACGGTATTAGTTCA 57.940 37.037 5.89 13.76 0.00 3.18
1815 3626 8.020244 GCCTACTGAAGTATACGGTATTAGTTC 58.980 40.741 5.89 10.64 0.00 3.01
1816 3627 7.308229 CGCCTACTGAAGTATACGGTATTAGTT 60.308 40.741 5.89 2.46 0.00 2.24
1817 3628 6.148480 CGCCTACTGAAGTATACGGTATTAGT 59.852 42.308 5.89 6.48 0.00 2.24
1818 3629 6.148480 ACGCCTACTGAAGTATACGGTATTAG 59.852 42.308 5.89 0.57 34.84 1.73
1819 3630 5.997746 ACGCCTACTGAAGTATACGGTATTA 59.002 40.000 5.89 0.00 34.84 0.98
1821 3632 4.214971 CACGCCTACTGAAGTATACGGTAT 59.785 45.833 5.87 5.87 34.84 2.73
1822 3633 3.561310 CACGCCTACTGAAGTATACGGTA 59.439 47.826 13.52 0.00 34.84 4.02
1823 3634 2.357009 CACGCCTACTGAAGTATACGGT 59.643 50.000 13.52 0.00 34.84 4.83
1824 3635 2.357009 ACACGCCTACTGAAGTATACGG 59.643 50.000 13.52 4.35 34.84 4.02
1825 3636 3.687572 ACACGCCTACTGAAGTATACG 57.312 47.619 0.00 9.47 35.89 3.06
1826 3637 5.404946 TGAAACACGCCTACTGAAGTATAC 58.595 41.667 0.00 0.00 0.00 1.47
1835 3655 3.435671 GCAAGTAATGAAACACGCCTACT 59.564 43.478 0.00 0.00 0.00 2.57
1876 3698 2.766313 TCTCCACAATTCTGGAACACG 58.234 47.619 3.88 0.00 39.97 4.49
1882 3704 6.770746 AAAGATCATTCTCCACAATTCTGG 57.229 37.500 0.00 0.00 0.00 3.86
2159 3981 4.399004 TGCTGCAAACCAAACAGTATTT 57.601 36.364 0.00 0.00 33.87 1.40
2160 3982 4.399004 TTGCTGCAAACCAAACAGTATT 57.601 36.364 13.51 0.00 33.87 1.89
2413 4237 8.443953 ACCTAATAAAAGCATGAATCTGAGTC 57.556 34.615 0.00 0.00 0.00 3.36
2436 4260 9.623000 ACCATAATGTAGGTATTACTCAAAACC 57.377 33.333 0.00 0.00 36.07 3.27
2585 4417 5.061808 CGTCGTTATTTCCTTTCCTACACTG 59.938 44.000 0.00 0.00 0.00 3.66
2589 4421 6.146021 TCAAACGTCGTTATTTCCTTTCCTAC 59.854 38.462 11.70 0.00 0.00 3.18
2621 4455 8.528044 ACCTCCAAAGACAAAATTACTTGTTA 57.472 30.769 0.00 0.00 39.63 2.41
2647 4481 6.578919 GCTCGTCAAAAATTCTGAAACCTAAG 59.421 38.462 0.00 0.00 0.00 2.18
2906 5623 8.728833 TCTAAAGTTTCCGACAAAACTAAAACA 58.271 29.630 9.83 0.00 46.17 2.83
2942 5659 7.554118 TCTGAAGAAATCTCAACAATGATACCC 59.446 37.037 0.00 0.00 34.37 3.69
3000 5718 3.072330 TGGTCCACAAATGACAAGCTCTA 59.928 43.478 0.00 0.00 34.36 2.43
3020 5738 8.499162 CAAATGACAAACTCTAGAAAGTAGTGG 58.501 37.037 0.00 0.00 0.00 4.00
3021 5739 9.046296 ACAAATGACAAACTCTAGAAAGTAGTG 57.954 33.333 0.00 0.00 0.00 2.74
3022 5740 9.046296 CACAAATGACAAACTCTAGAAAGTAGT 57.954 33.333 0.00 0.00 0.00 2.73
3023 5741 8.499162 CCACAAATGACAAACTCTAGAAAGTAG 58.501 37.037 0.00 0.00 0.00 2.57
3024 5742 8.208224 TCCACAAATGACAAACTCTAGAAAGTA 58.792 33.333 0.00 0.00 0.00 2.24
3025 5743 7.054124 TCCACAAATGACAAACTCTAGAAAGT 58.946 34.615 0.00 0.00 0.00 2.66
3026 5744 7.496529 TCCACAAATGACAAACTCTAGAAAG 57.503 36.000 0.00 0.00 0.00 2.62
3027 5745 7.556275 AGTTCCACAAATGACAAACTCTAGAAA 59.444 33.333 0.00 0.00 0.00 2.52
3028 5746 7.054124 AGTTCCACAAATGACAAACTCTAGAA 58.946 34.615 0.00 0.00 0.00 2.10
3029 5747 6.591935 AGTTCCACAAATGACAAACTCTAGA 58.408 36.000 0.00 0.00 0.00 2.43
3030 5748 6.708054 AGAGTTCCACAAATGACAAACTCTAG 59.292 38.462 12.58 0.00 42.22 2.43
3031 5749 6.483307 CAGAGTTCCACAAATGACAAACTCTA 59.517 38.462 13.44 0.00 42.18 2.43
3032 5750 5.297776 CAGAGTTCCACAAATGACAAACTCT 59.702 40.000 9.60 9.60 43.38 3.24
3033 5751 5.296780 TCAGAGTTCCACAAATGACAAACTC 59.703 40.000 6.01 6.01 38.55 3.01
3034 5752 5.192927 TCAGAGTTCCACAAATGACAAACT 58.807 37.500 0.00 0.00 0.00 2.66
3035 5753 5.499139 TCAGAGTTCCACAAATGACAAAC 57.501 39.130 0.00 0.00 0.00 2.93
3036 5754 5.885352 TCTTCAGAGTTCCACAAATGACAAA 59.115 36.000 0.00 0.00 0.00 2.83
3037 5755 5.436175 TCTTCAGAGTTCCACAAATGACAA 58.564 37.500 0.00 0.00 0.00 3.18
3038 5756 5.034852 TCTTCAGAGTTCCACAAATGACA 57.965 39.130 0.00 0.00 0.00 3.58
3039 5757 5.300752 TCTCTTCAGAGTTCCACAAATGAC 58.699 41.667 3.73 0.00 42.60 3.06
3040 5758 5.551305 TCTCTTCAGAGTTCCACAAATGA 57.449 39.130 3.73 0.00 42.60 2.57
3041 5759 6.624352 TTTCTCTTCAGAGTTCCACAAATG 57.376 37.500 3.73 0.00 42.60 2.32
3042 5760 7.645058 TTTTTCTCTTCAGAGTTCCACAAAT 57.355 32.000 3.73 0.00 42.60 2.32
3068 5786 6.539826 TCAACCATATGCTCTACAACTGAATG 59.460 38.462 0.00 0.00 0.00 2.67
3102 5820 8.275040 AGCTGGTTATACTCCATCACTTTATTT 58.725 33.333 0.00 0.00 34.26 1.40
3171 5889 8.087982 TGAGAACAACATAATTTGACTCTGTC 57.912 34.615 0.00 0.00 36.01 3.51
3223 5941 7.214467 AGAAAGTTATGAGATTTCCGCAAAA 57.786 32.000 0.00 0.00 34.23 2.44
3235 5953 6.684555 GCAGCGTAATTGAAGAAAGTTATGAG 59.315 38.462 0.00 0.00 0.00 2.90
3237 5955 6.314018 TGCAGCGTAATTGAAGAAAGTTATG 58.686 36.000 0.00 0.00 0.00 1.90
3238 5956 6.371548 TCTGCAGCGTAATTGAAGAAAGTTAT 59.628 34.615 9.47 0.00 27.09 1.89
3240 5958 4.515191 TCTGCAGCGTAATTGAAGAAAGTT 59.485 37.500 9.47 0.00 27.09 2.66
3692 7376 8.588290 AAGTTAGTAAATGATTGCATACCCAA 57.412 30.769 0.00 0.00 33.44 4.12
3701 7385 8.110860 AGGTTGTGGAAGTTAGTAAATGATTG 57.889 34.615 0.00 0.00 0.00 2.67
3705 7389 8.294577 GGTTTAGGTTGTGGAAGTTAGTAAATG 58.705 37.037 0.00 0.00 0.00 2.32
3763 7447 6.381481 TCAACTAATTGCCTTATCAGCATG 57.619 37.500 0.00 0.00 40.59 4.06
3904 7595 8.716674 ATGCAGATATCCAATTAGACCAAATT 57.283 30.769 0.00 0.00 0.00 1.82
4152 7896 0.554865 ACCCATCCAATCAAGGGGGA 60.555 55.000 0.00 0.00 45.83 4.81
4153 7897 0.339510 AACCCATCCAATCAAGGGGG 59.660 55.000 0.00 0.00 45.83 5.40
4154 7898 1.832998 CAAACCCATCCAATCAAGGGG 59.167 52.381 0.00 0.00 45.83 4.79
4155 7899 2.539302 ACAAACCCATCCAATCAAGGG 58.461 47.619 0.00 0.00 46.96 3.95
4156 7900 5.478407 GTTTACAAACCCATCCAATCAAGG 58.522 41.667 0.00 0.00 32.82 3.61
4222 7966 4.202131 TGTGAAACAGAAGCAATGCATTCA 60.202 37.500 9.53 5.39 45.67 2.57
4223 7967 4.300803 TGTGAAACAGAAGCAATGCATTC 58.699 39.130 9.53 8.52 45.67 2.67
4504 8342 0.103026 TCGCGATGAGATCTTGGGTG 59.897 55.000 3.71 0.00 0.00 4.61
4686 8586 1.022735 CTCCTGCATGGAAGCATGAC 58.977 55.000 0.00 0.00 45.63 3.06
5042 8942 4.522022 AGTATTACCGGGATAAAGAGACCG 59.478 45.833 6.32 0.00 45.57 4.79
5147 9047 2.436646 AGGAAAGATGCGGCACCG 60.437 61.111 4.03 4.30 43.09 4.94
5459 9359 3.666253 GGAAACCCGTTGTGGCCG 61.666 66.667 0.00 0.00 35.87 6.13
5561 9461 4.352298 ACCTTCTCCTTCATGAAGTTCCTT 59.648 41.667 29.03 8.59 38.30 3.36
5615 9515 2.935201 TGCAAAGTCAAATGCACCAAAC 59.065 40.909 0.00 0.00 46.87 2.93
5624 9524 2.435437 ACCAGGCTTTGCAAAGTCAAAT 59.565 40.909 37.37 22.69 42.92 2.32
5856 9759 8.546083 AAGGATCTGAGGTATGTATGGATATC 57.454 38.462 0.00 0.00 0.00 1.63
5869 9775 9.712305 CAATTACGATATTTAAGGATCTGAGGT 57.288 33.333 0.00 0.00 0.00 3.85
5872 9778 8.988934 GTGCAATTACGATATTTAAGGATCTGA 58.011 33.333 0.00 0.00 0.00 3.27
5888 9794 5.051173 TGCAAACAAAGAATGTGCAATTACG 60.051 36.000 0.00 0.00 42.99 3.18
5889 9795 6.284475 TGCAAACAAAGAATGTGCAATTAC 57.716 33.333 0.00 0.00 42.99 1.89
5892 9798 5.057819 TCATGCAAACAAAGAATGTGCAAT 58.942 33.333 0.24 0.00 42.28 3.56
5894 9800 4.056092 TCATGCAAACAAAGAATGTGCA 57.944 36.364 0.00 0.00 42.99 4.57
5895 9801 6.532302 TCATATCATGCAAACAAAGAATGTGC 59.468 34.615 0.00 0.00 42.99 4.57
5896 9802 8.468720 TTCATATCATGCAAACAAAGAATGTG 57.531 30.769 0.00 0.00 42.99 3.21
5897 9803 8.308931 ACTTCATATCATGCAAACAAAGAATGT 58.691 29.630 0.00 0.00 46.82 2.71
5898 9804 8.697846 ACTTCATATCATGCAAACAAAGAATG 57.302 30.769 0.00 0.00 0.00 2.67
5899 9805 9.362539 GAACTTCATATCATGCAAACAAAGAAT 57.637 29.630 0.00 0.00 0.00 2.40
5902 9808 8.697846 ATGAACTTCATATCATGCAAACAAAG 57.302 30.769 2.17 0.00 34.88 2.77
5921 9829 5.061853 CAGAATATGGCTGCAGTATGAACT 58.938 41.667 16.64 4.72 39.69 3.01
5941 9849 9.613428 CACCCTATAATTGAACTCAAATACAGA 57.387 33.333 0.00 0.00 39.55 3.41
5942 9850 9.396022 ACACCCTATAATTGAACTCAAATACAG 57.604 33.333 0.00 0.00 39.55 2.74
5943 9851 9.747898 AACACCCTATAATTGAACTCAAATACA 57.252 29.630 0.00 0.00 39.55 2.29
5948 9856 9.747898 ATGTTAACACCCTATAATTGAACTCAA 57.252 29.630 11.22 0.00 40.51 3.02
5980 9892 2.478134 CTCTGCACCGAAACAAGAAGAG 59.522 50.000 0.00 0.00 0.00 2.85
6249 10164 2.501316 CCAAAATGAAATCCACTCCCCC 59.499 50.000 0.00 0.00 0.00 5.40
6250 10165 2.093500 GCCAAAATGAAATCCACTCCCC 60.093 50.000 0.00 0.00 0.00 4.81
6251 10166 2.566724 TGCCAAAATGAAATCCACTCCC 59.433 45.455 0.00 0.00 0.00 4.30
6252 10167 3.853475 CTGCCAAAATGAAATCCACTCC 58.147 45.455 0.00 0.00 0.00 3.85
6253 10168 3.256558 GCTGCCAAAATGAAATCCACTC 58.743 45.455 0.00 0.00 0.00 3.51
6254 10169 2.027837 GGCTGCCAAAATGAAATCCACT 60.028 45.455 15.17 0.00 0.00 4.00
6255 10170 2.027837 AGGCTGCCAAAATGAAATCCAC 60.028 45.455 22.65 0.00 0.00 4.02
6256 10171 2.027929 CAGGCTGCCAAAATGAAATCCA 60.028 45.455 22.65 0.00 0.00 3.41
6257 10172 2.027837 ACAGGCTGCCAAAATGAAATCC 60.028 45.455 22.65 0.00 0.00 3.01
6258 10173 2.997986 CACAGGCTGCCAAAATGAAATC 59.002 45.455 22.65 0.00 0.00 2.17
6259 10174 2.633967 TCACAGGCTGCCAAAATGAAAT 59.366 40.909 22.65 0.00 0.00 2.17
6260 10175 2.037901 TCACAGGCTGCCAAAATGAAA 58.962 42.857 22.65 1.44 0.00 2.69
6261 10176 1.702182 TCACAGGCTGCCAAAATGAA 58.298 45.000 22.65 1.79 0.00 2.57
6262 10177 1.820519 GATCACAGGCTGCCAAAATGA 59.179 47.619 22.65 17.48 0.00 2.57
6263 10178 1.822990 AGATCACAGGCTGCCAAAATG 59.177 47.619 22.65 12.77 0.00 2.32
6264 10179 2.226962 AGATCACAGGCTGCCAAAAT 57.773 45.000 22.65 8.47 0.00 1.82
6265 10180 1.999648 AAGATCACAGGCTGCCAAAA 58.000 45.000 22.65 3.36 0.00 2.44
6266 10181 1.614903 CAAAGATCACAGGCTGCCAAA 59.385 47.619 22.65 2.98 0.00 3.28
6267 10182 1.250328 CAAAGATCACAGGCTGCCAA 58.750 50.000 22.65 3.37 0.00 4.52
6268 10183 0.111061 ACAAAGATCACAGGCTGCCA 59.889 50.000 22.65 0.58 0.00 4.92
6269 10184 0.524862 CACAAAGATCACAGGCTGCC 59.475 55.000 15.89 11.65 0.00 4.85
6270 10185 1.242076 ACACAAAGATCACAGGCTGC 58.758 50.000 15.89 0.00 0.00 5.25
6324 10239 4.518211 AGAAGATGTGTGAAGCAAAAGAGG 59.482 41.667 0.00 0.00 0.00 3.69
6516 10433 2.357517 CTCCCCACTGACGTGTGC 60.358 66.667 0.00 0.00 39.55 4.57
6534 10451 3.777925 CAGCAACGAACGAGGCGG 61.778 66.667 0.14 1.47 0.00 6.13
6544 10461 1.280746 CTGGCTTGTGACAGCAACG 59.719 57.895 8.75 0.00 43.11 4.10
6557 10474 0.180406 ATACCGGCGAATTTCTGGCT 59.820 50.000 9.30 0.00 33.23 4.75
6573 10490 0.727398 GTCGCTGTGCAAAGGGATAC 59.273 55.000 24.89 11.42 40.74 2.24
6574 10491 0.613260 AGTCGCTGTGCAAAGGGATA 59.387 50.000 24.89 2.54 40.74 2.59
6575 10492 0.674895 GAGTCGCTGTGCAAAGGGAT 60.675 55.000 24.89 14.51 40.74 3.85
6576 10493 1.301716 GAGTCGCTGTGCAAAGGGA 60.302 57.895 19.15 19.15 36.84 4.20
6577 10494 2.328099 GGAGTCGCTGTGCAAAGGG 61.328 63.158 14.70 14.70 0.00 3.95
6602 10537 1.219393 GGTCAGGTCAGCAGTAGGC 59.781 63.158 0.00 0.00 45.30 3.93
6621 10556 2.815647 CAACGGAGCTCCTTCGGC 60.816 66.667 29.73 3.13 36.69 5.54
6624 10559 2.436824 GGCCAACGGAGCTCCTTC 60.437 66.667 29.73 13.42 0.00 3.46
6625 10560 4.035102 GGGCCAACGGAGCTCCTT 62.035 66.667 29.73 19.22 0.00 3.36
6652 10588 1.004394 GTTCCCCCTTTCCGTTCATCT 59.996 52.381 0.00 0.00 0.00 2.90
6677 10642 2.056223 ATCATGGTGCCTTGCCTGC 61.056 57.895 0.00 0.00 0.00 4.85
6702 10667 0.809385 CTGCTGCTGGAATCAACAGG 59.191 55.000 0.00 0.00 37.52 4.00
6705 10670 1.509923 GCCTGCTGCTGGAATCAAC 59.490 57.895 27.16 6.33 36.87 3.18
6723 10688 1.662629 CTCTAGCAAGCAATGACCACG 59.337 52.381 0.00 0.00 0.00 4.94
6725 10690 3.515502 ACTACTCTAGCAAGCAATGACCA 59.484 43.478 0.00 0.00 0.00 4.02
6742 10707 1.542030 CGAGAGACAGTGGCAACTACT 59.458 52.381 0.00 0.00 33.79 2.57
6743 10708 1.983972 CGAGAGACAGTGGCAACTAC 58.016 55.000 0.00 0.00 33.79 2.73
6744 10709 0.243907 GCGAGAGACAGTGGCAACTA 59.756 55.000 0.00 0.00 33.79 2.24
6745 10710 1.005630 GCGAGAGACAGTGGCAACT 60.006 57.895 0.00 0.00 36.98 3.16
6746 10711 2.029844 GGCGAGAGACAGTGGCAAC 61.030 63.158 0.00 0.00 40.66 4.17
6747 10712 2.343758 GGCGAGAGACAGTGGCAA 59.656 61.111 0.00 0.00 40.66 4.52
6748 10713 4.056125 CGGCGAGAGACAGTGGCA 62.056 66.667 0.00 0.00 41.50 4.92
6749 10714 4.803426 CCGGCGAGAGACAGTGGC 62.803 72.222 9.30 0.00 41.50 5.01
6750 10715 1.994507 CTACCGGCGAGAGACAGTGG 61.995 65.000 9.30 0.00 41.50 4.00
6751 10716 1.306642 ACTACCGGCGAGAGACAGTG 61.307 60.000 9.30 0.00 41.50 3.66
6752 10717 0.608582 AACTACCGGCGAGAGACAGT 60.609 55.000 9.30 0.00 41.50 3.55
6753 10718 0.179161 CAACTACCGGCGAGAGACAG 60.179 60.000 9.30 0.00 41.50 3.51
6795 10760 2.242572 CCATGTCTGATGCCTCGCG 61.243 63.158 0.00 0.00 0.00 5.87
6823 10788 4.518970 TGAGGAGTTTGTGCATAAAGTTCC 59.481 41.667 21.99 21.99 0.00 3.62
6847 10824 0.253044 ATCCTAGCGCCAAAAGCTGA 59.747 50.000 2.29 0.00 45.60 4.26
6855 10832 2.997980 TCAAATTCAATCCTAGCGCCA 58.002 42.857 2.29 0.00 0.00 5.69
6858 10835 7.864379 AGCATAAAATCAAATTCAATCCTAGCG 59.136 33.333 0.00 0.00 0.00 4.26
6864 10841 8.706492 TCCACAGCATAAAATCAAATTCAATC 57.294 30.769 0.00 0.00 0.00 2.67
6921 10899 0.534412 AGCTGACACAAGAGATCGGG 59.466 55.000 0.00 0.00 0.00 5.14
6929 10907 1.467734 GATCCTTGCAGCTGACACAAG 59.532 52.381 20.43 20.04 40.36 3.16
6944 10922 0.035036 CATGATGGCTCAGCGATCCT 59.965 55.000 18.11 6.41 41.83 3.24
6945 10923 0.250209 ACATGATGGCTCAGCGATCC 60.250 55.000 18.11 2.19 41.83 3.36
6947 10925 1.674441 CAAACATGATGGCTCAGCGAT 59.326 47.619 0.00 0.00 34.12 4.58
6948 10926 1.089112 CAAACATGATGGCTCAGCGA 58.911 50.000 0.00 0.00 34.12 4.93
6949 10927 0.806868 ACAAACATGATGGCTCAGCG 59.193 50.000 0.00 0.00 34.12 5.18
6950 10928 1.814394 TGACAAACATGATGGCTCAGC 59.186 47.619 0.00 0.00 34.12 4.26
6968 10946 5.804979 CACATGTGTACGTACAATCTCATGA 59.195 40.000 37.53 15.15 38.33 3.07
7004 10987 1.962807 CCAAGTCCCAAAGCACATTCA 59.037 47.619 0.00 0.00 0.00 2.57
7020 11003 2.699846 CCCTCTCAATCTCTCTCCCAAG 59.300 54.545 0.00 0.00 0.00 3.61
7021 11004 2.316067 TCCCTCTCAATCTCTCTCCCAA 59.684 50.000 0.00 0.00 0.00 4.12
7022 11005 1.933051 TCCCTCTCAATCTCTCTCCCA 59.067 52.381 0.00 0.00 0.00 4.37
7024 11007 5.428184 TTTTTCCCTCTCAATCTCTCTCC 57.572 43.478 0.00 0.00 0.00 3.71
7045 11028 6.608808 CCATACATCAGAATCCTTCCCTTTTT 59.391 38.462 0.00 0.00 0.00 1.94
7046 11029 6.131961 CCATACATCAGAATCCTTCCCTTTT 58.868 40.000 0.00 0.00 0.00 2.27
7047 11030 5.399497 CCCATACATCAGAATCCTTCCCTTT 60.399 44.000 0.00 0.00 0.00 3.11
7048 11031 4.105377 CCCATACATCAGAATCCTTCCCTT 59.895 45.833 0.00 0.00 0.00 3.95
7049 11032 3.654806 CCCATACATCAGAATCCTTCCCT 59.345 47.826 0.00 0.00 0.00 4.20
7060 11043 1.671979 CTGCCACACCCATACATCAG 58.328 55.000 0.00 0.00 0.00 2.90
7063 11046 0.548031 CTCCTGCCACACCCATACAT 59.452 55.000 0.00 0.00 0.00 2.29
7066 11049 2.679342 GCCTCCTGCCACACCCATA 61.679 63.158 0.00 0.00 0.00 2.74
7069 11052 4.052518 ATGCCTCCTGCCACACCC 62.053 66.667 0.00 0.00 40.16 4.61
7070 11053 2.196997 TACATGCCTCCTGCCACACC 62.197 60.000 0.00 0.00 40.16 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.