Multiple sequence alignment - TraesCS2B01G325300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G325300 chr2B 100.000 2223 0 0 864 3086 464897858 464900080 0.000000e+00 4106.0
1 TraesCS2B01G325300 chr2B 97.007 1370 35 2 864 2232 464878268 464879632 0.000000e+00 2298.0
2 TraesCS2B01G325300 chr2B 100.000 393 0 0 1 393 464896995 464897387 0.000000e+00 726.0
3 TraesCS2B01G325300 chr2B 96.420 419 13 2 2670 3086 485904409 485904827 0.000000e+00 689.0
4 TraesCS2B01G325300 chr2B 92.441 463 26 3 2219 2674 464880628 464881088 0.000000e+00 652.0
5 TraesCS2B01G325300 chr2B 91.515 165 14 0 229 393 464877952 464878116 8.610000e-56 228.0
6 TraesCS2B01G325300 chr2B 94.690 113 6 0 1 113 464877153 464877265 3.160000e-40 176.0
7 TraesCS2B01G325300 chr2B 81.290 155 24 1 909 1058 464956764 464956918 1.500000e-23 121.0
8 TraesCS2B01G325300 chr2B 98.113 53 1 0 909 961 464878259 464878311 3.280000e-15 93.5
9 TraesCS2B01G325300 chr2B 97.727 44 1 0 864 907 464897912 464897955 3.300000e-10 76.8
10 TraesCS2B01G325300 chr2D 92.777 1786 87 18 909 2674 393069408 393071171 0.000000e+00 2545.0
11 TraesCS2B01G325300 chr2D 93.034 1579 88 9 1110 2674 393204847 393206417 0.000000e+00 2287.0
12 TraesCS2B01G325300 chr2D 97.094 413 12 0 2674 3086 9524722 9525134 0.000000e+00 697.0
13 TraesCS2B01G325300 chr2D 85.561 374 44 5 2237 2602 393216527 393216898 1.740000e-102 383.0
14 TraesCS2B01G325300 chr2D 94.787 211 5 2 909 1114 393204675 393204884 1.070000e-84 324.0
15 TraesCS2B01G325300 chr2D 95.758 165 7 0 229 393 393069114 393069278 1.820000e-67 267.0
16 TraesCS2B01G325300 chr2D 94.737 114 5 1 1 113 393066010 393066123 3.160000e-40 176.0
17 TraesCS2B01G325300 chr2D 95.327 107 5 0 1 107 393202477 393202583 1.470000e-38 171.0
18 TraesCS2B01G325300 chr2D 93.636 110 4 2 123 231 393203664 393203771 8.860000e-36 161.0
19 TraesCS2B01G325300 chr2D 91.304 115 6 3 118 231 393068259 393068370 1.480000e-33 154.0
20 TraesCS2B01G325300 chr2D 94.118 68 4 0 909 976 393213820 393213887 1.510000e-18 104.0
21 TraesCS2B01G325300 chr2D 97.727 44 1 0 864 907 393069417 393069460 3.300000e-10 76.8
22 TraesCS2B01G325300 chr2D 97.727 44 1 0 864 907 393204684 393204727 3.300000e-10 76.8
23 TraesCS2B01G325300 chr2D 100.000 37 0 0 871 907 393213836 393213872 5.520000e-08 69.4
24 TraesCS2B01G325300 chr2A 90.506 1780 112 23 909 2674 531151190 531152926 0.000000e+00 2298.0
25 TraesCS2B01G325300 chr2A 95.758 165 7 0 229 393 531150901 531151065 1.820000e-67 267.0
26 TraesCS2B01G325300 chr2A 94.783 115 5 1 118 231 531150393 531150507 8.790000e-41 178.0
27 TraesCS2B01G325300 chr2A 94.690 113 6 0 1 113 531149663 531149775 3.160000e-40 176.0
28 TraesCS2B01G325300 chr1D 93.201 956 62 3 1108 2061 113994875 113993921 0.000000e+00 1402.0
29 TraesCS2B01G325300 chr1D 96.860 414 12 1 2674 3086 11499621 11500034 0.000000e+00 691.0
30 TraesCS2B01G325300 chr1D 91.866 209 12 1 911 1114 113995044 113994836 1.400000e-73 287.0
31 TraesCS2B01G325300 chr1D 92.424 66 5 0 2609 2674 113993173 113993108 9.110000e-16 95.3
32 TraesCS2B01G325300 chr1B 91.745 957 73 4 1108 2059 174252412 174251457 0.000000e+00 1325.0
33 TraesCS2B01G325300 chr1B 92.718 206 9 1 909 1114 174252572 174252373 3.010000e-75 292.0
34 TraesCS2B01G325300 chr1B 95.522 67 2 1 2609 2674 174249357 174249291 4.210000e-19 106.0
35 TraesCS2B01G325300 chr3A 91.964 896 65 2 1114 2002 102435969 102436864 0.000000e+00 1249.0
36 TraesCS2B01G325300 chr3A 90.960 896 68 6 1114 2002 102388699 102389588 0.000000e+00 1194.0
37 TraesCS2B01G325300 chr3A 97.826 414 8 1 2674 3086 66215674 66215261 0.000000e+00 713.0
38 TraesCS2B01G325300 chr3A 89.773 176 12 2 2058 2232 102500294 102500464 1.440000e-53 220.0
39 TraesCS2B01G325300 chr3A 88.701 177 13 3 2058 2232 102393612 102393783 3.120000e-50 209.0
40 TraesCS2B01G325300 chr3B 92.237 760 56 1 1108 1864 135711425 135712184 0.000000e+00 1074.0
41 TraesCS2B01G325300 chr3B 91.645 754 60 1 1114 1864 135768853 135769606 0.000000e+00 1040.0
42 TraesCS2B01G325300 chr3B 98.309 414 6 1 2674 3086 691707248 691706835 0.000000e+00 725.0
43 TraesCS2B01G325300 chr3B 98.309 414 6 1 2674 3086 746300226 746300639 0.000000e+00 725.0
44 TraesCS2B01G325300 chr3B 90.476 105 10 0 1010 1114 135711360 135711464 4.150000e-29 139.0
45 TraesCS2B01G325300 chr3B 88.571 105 12 0 1010 1114 135808300 135808404 8.980000e-26 128.0
46 TraesCS2B01G325300 chr6B 97.101 414 10 2 2674 3086 25571199 25570787 0.000000e+00 697.0
47 TraesCS2B01G325300 chr5D 97.101 414 11 1 2674 3086 47518524 47518937 0.000000e+00 697.0
48 TraesCS2B01G325300 chr4B 97.101 414 11 1 2674 3086 670396377 670396790 0.000000e+00 697.0
49 TraesCS2B01G325300 chr3D 89.051 411 34 4 2231 2632 85838404 85838812 1.650000e-137 499.0
50 TraesCS2B01G325300 chr3D 89.205 176 12 4 2058 2232 85838200 85838369 2.410000e-51 213.0
51 TraesCS2B01G325300 chr3D 89.524 105 11 0 1010 1114 85826976 85827080 1.930000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G325300 chr2B 464896995 464900080 3085 False 1636.266667 4106 99.242333 1 3086 3 chr2B.!!$F4 3085
1 TraesCS2B01G325300 chr2B 464877153 464881088 3935 False 689.500000 2298 94.753200 1 2674 5 chr2B.!!$F3 2673
2 TraesCS2B01G325300 chr2D 393066010 393071171 5161 False 643.760000 2545 94.460600 1 2674 5 chr2D.!!$F2 2673
3 TraesCS2B01G325300 chr2D 393202477 393206417 3940 False 603.960000 2287 94.902200 1 2674 5 chr2D.!!$F3 2673
4 TraesCS2B01G325300 chr2A 531149663 531152926 3263 False 729.750000 2298 93.934250 1 2674 4 chr2A.!!$F1 2673
5 TraesCS2B01G325300 chr1D 113993108 113995044 1936 True 594.766667 1402 92.497000 911 2674 3 chr1D.!!$R1 1763
6 TraesCS2B01G325300 chr1B 174249291 174252572 3281 True 574.333333 1325 93.328333 909 2674 3 chr1B.!!$R1 1765
7 TraesCS2B01G325300 chr3A 102435969 102436864 895 False 1249.000000 1249 91.964000 1114 2002 1 chr3A.!!$F3 888
8 TraesCS2B01G325300 chr3A 102388699 102389588 889 False 1194.000000 1194 90.960000 1114 2002 1 chr3A.!!$F1 888
9 TraesCS2B01G325300 chr3B 135768853 135769606 753 False 1040.000000 1040 91.645000 1114 1864 1 chr3B.!!$F1 750
10 TraesCS2B01G325300 chr3B 135711360 135712184 824 False 606.500000 1074 91.356500 1010 1864 2 chr3B.!!$F4 854
11 TraesCS2B01G325300 chr3D 85838200 85838812 612 False 356.000000 499 89.128000 2058 2632 2 chr3D.!!$F2 574

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
294 3645 0.036010 CAGCTTCTCGTGTCCCCATT 60.036 55.000 0.00 0.00 0.0 3.16 F
340 3691 2.220615 CTGTCGATGTGGTGCCCGTA 62.221 60.000 0.00 0.00 0.0 4.02 F
1560 4919 1.372997 GCTCTGTTGTCGGCGAAGA 60.373 57.895 12.92 10.24 0.0 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1235 4591 0.886043 TCGAGACGGACGAAAGGACA 60.886 55.000 0.00 0.0 36.84 4.02 R
1645 5004 1.656263 GTCGACGTCTCGCACAACA 60.656 57.895 14.70 0.0 39.96 3.33 R
2509 8349 0.033796 TCCCCGTCTAGACCAACGAT 60.034 55.000 17.23 0.0 41.29 3.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 72 2.816087 TCACATTGGCTGAGCTTCTTTC 59.184 45.455 3.72 0.00 0.00 2.62
107 109 4.801330 TTGTCTACATCACTTCCGACAT 57.199 40.909 0.00 0.00 32.24 3.06
113 115 4.537135 ACATCACTTCCGACATAGTTGT 57.463 40.909 0.00 0.00 39.32 3.32
114 116 4.894784 ACATCACTTCCGACATAGTTGTT 58.105 39.130 0.00 0.00 35.79 2.83
115 117 5.305585 ACATCACTTCCGACATAGTTGTTT 58.694 37.500 0.00 0.00 35.79 2.83
130 2718 8.374743 ACATAGTTGTTTTGCCTTAAAATCCAT 58.625 29.630 0.00 0.00 40.17 3.41
131 2719 9.218440 CATAGTTGTTTTGCCTTAAAATCCATT 57.782 29.630 0.00 0.00 40.17 3.16
167 2755 5.641209 CCTTATATCTGCTATCCACTGTTGC 59.359 44.000 0.00 0.00 0.00 4.17
219 2807 2.171448 CCCTGAGATCTGACGGGAATTT 59.829 50.000 13.05 0.00 37.05 1.82
225 2813 1.988293 TCTGACGGGAATTTTTGCCA 58.012 45.000 0.00 0.00 41.95 4.92
226 2814 1.611491 TCTGACGGGAATTTTTGCCAC 59.389 47.619 0.00 0.00 41.95 5.01
294 3645 0.036010 CAGCTTCTCGTGTCCCCATT 60.036 55.000 0.00 0.00 0.00 3.16
340 3691 2.220615 CTGTCGATGTGGTGCCCGTA 62.221 60.000 0.00 0.00 0.00 4.02
1316 4672 4.087182 TCTCCAACTTCTCCGTCAAGTAT 58.913 43.478 0.00 0.00 32.71 2.12
1560 4919 1.372997 GCTCTGTTGTCGGCGAAGA 60.373 57.895 12.92 10.24 0.00 2.87
1620 4979 2.055042 CCCACTCCCTCTCTCGTGG 61.055 68.421 0.00 0.00 44.98 4.94
1645 5004 1.989966 ATCACGACGTCGCCGAATCT 61.990 55.000 35.92 15.88 44.43 2.40
1736 5095 2.967459 TAGCGTCGTCGACTTTGTTA 57.033 45.000 22.18 7.40 39.71 2.41
1748 5107 3.391049 GACTTTGTTAACGGCAGACTCT 58.609 45.455 0.26 0.00 0.00 3.24
1922 5281 0.986019 AGGTCATAATCCACCGGCCA 60.986 55.000 0.00 0.00 37.79 5.36
1931 5290 0.105709 TCCACCGGCCAGAGATCATA 60.106 55.000 0.00 0.00 0.00 2.15
2350 6803 4.522789 AGTTGTGGATATTCGTTTTGGCTT 59.477 37.500 0.00 0.00 0.00 4.35
2401 6854 5.819901 GTGCAGTCCATCTTCTTATAGCTTT 59.180 40.000 0.00 0.00 0.00 3.51
2438 8278 8.911918 TGTATTGTCCTTTGTATTACACAGTT 57.088 30.769 8.71 0.00 38.72 3.16
2509 8349 0.863144 GAGCGCAGTCCGTTTGTTAA 59.137 50.000 11.47 0.00 39.71 2.01
2641 8628 7.071447 TCGGTATTGGAGGAATCAATAGGTAAA 59.929 37.037 0.00 0.00 37.64 2.01
2675 8662 1.055551 TGGTACCGTGGTGTCCCTTT 61.056 55.000 7.57 0.00 0.00 3.11
2676 8663 0.109153 GGTACCGTGGTGTCCCTTTT 59.891 55.000 0.72 0.00 0.00 2.27
2677 8664 1.477377 GGTACCGTGGTGTCCCTTTTT 60.477 52.381 0.72 0.00 0.00 1.94
2678 8665 1.875514 GTACCGTGGTGTCCCTTTTTC 59.124 52.381 0.72 0.00 0.00 2.29
2679 8666 0.549469 ACCGTGGTGTCCCTTTTTCT 59.451 50.000 0.00 0.00 0.00 2.52
2680 8667 1.770061 ACCGTGGTGTCCCTTTTTCTA 59.230 47.619 0.00 0.00 0.00 2.10
2681 8668 2.224450 ACCGTGGTGTCCCTTTTTCTAG 60.224 50.000 0.00 0.00 0.00 2.43
2682 8669 2.038033 CCGTGGTGTCCCTTTTTCTAGA 59.962 50.000 0.00 0.00 0.00 2.43
2683 8670 3.495453 CCGTGGTGTCCCTTTTTCTAGAA 60.495 47.826 0.00 0.00 0.00 2.10
2684 8671 4.131596 CGTGGTGTCCCTTTTTCTAGAAA 58.868 43.478 13.99 13.99 0.00 2.52
2685 8672 4.577283 CGTGGTGTCCCTTTTTCTAGAAAA 59.423 41.667 23.65 23.65 38.40 2.29
2686 8673 5.277828 CGTGGTGTCCCTTTTTCTAGAAAAG 60.278 44.000 25.38 19.63 40.83 2.27
2696 8683 7.384439 CTTTTTCTAGAAAAGGAGGATGACC 57.616 40.000 27.41 0.00 40.83 4.02
2697 8684 5.437191 TTTCTAGAAAAGGAGGATGACCC 57.563 43.478 15.57 0.00 36.73 4.46
2698 8685 3.385115 TCTAGAAAAGGAGGATGACCCC 58.615 50.000 0.00 0.00 36.73 4.95
2699 8686 0.912486 AGAAAAGGAGGATGACCCCG 59.088 55.000 0.00 0.00 36.73 5.73
2700 8687 0.107165 GAAAAGGAGGATGACCCCGG 60.107 60.000 0.00 0.00 36.73 5.73
2701 8688 2.211468 AAAAGGAGGATGACCCCGGC 62.211 60.000 0.00 0.00 36.73 6.13
2704 8691 3.551407 GAGGATGACCCCGGCCTC 61.551 72.222 7.66 7.66 40.04 4.70
2705 8692 4.095400 AGGATGACCCCGGCCTCT 62.095 66.667 0.00 0.00 36.73 3.69
2706 8693 3.866582 GGATGACCCCGGCCTCTG 61.867 72.222 0.00 0.00 0.00 3.35
2707 8694 4.554036 GATGACCCCGGCCTCTGC 62.554 72.222 0.00 0.00 0.00 4.26
2710 8697 4.554036 GACCCCGGCCTCTGCATC 62.554 72.222 0.00 0.00 40.13 3.91
2712 8699 4.559063 CCCCGGCCTCTGCATCTG 62.559 72.222 0.00 0.00 40.13 2.90
2713 8700 3.473647 CCCGGCCTCTGCATCTGA 61.474 66.667 0.00 0.00 40.13 3.27
2714 8701 2.108566 CCGGCCTCTGCATCTGAG 59.891 66.667 0.00 0.00 40.13 3.35
2715 8702 2.429767 CCGGCCTCTGCATCTGAGA 61.430 63.158 0.00 0.00 40.13 3.27
2716 8703 1.067749 CGGCCTCTGCATCTGAGAG 59.932 63.158 0.00 0.00 40.13 3.20
2717 8704 1.390383 CGGCCTCTGCATCTGAGAGA 61.390 60.000 0.00 0.00 39.58 3.10
2718 8705 1.050204 GGCCTCTGCATCTGAGAGAT 58.950 55.000 0.00 0.00 39.58 2.75
2727 8714 2.335752 CATCTGAGAGATGCATACGGC 58.664 52.381 0.00 0.00 44.69 5.68
2728 8715 0.676184 TCTGAGAGATGCATACGGCC 59.324 55.000 0.00 0.00 43.89 6.13
2729 8716 0.390492 CTGAGAGATGCATACGGCCA 59.610 55.000 2.24 0.00 43.89 5.36
2730 8717 0.104855 TGAGAGATGCATACGGCCAC 59.895 55.000 2.24 0.00 43.89 5.01
2731 8718 0.390860 GAGAGATGCATACGGCCACT 59.609 55.000 2.24 0.00 43.89 4.00
2732 8719 0.833287 AGAGATGCATACGGCCACTT 59.167 50.000 2.24 0.00 43.89 3.16
2733 8720 1.210478 AGAGATGCATACGGCCACTTT 59.790 47.619 2.24 0.00 43.89 2.66
2734 8721 2.434336 AGAGATGCATACGGCCACTTTA 59.566 45.455 2.24 0.00 43.89 1.85
2735 8722 3.071602 AGAGATGCATACGGCCACTTTAT 59.928 43.478 2.24 0.00 43.89 1.40
2736 8723 3.815401 GAGATGCATACGGCCACTTTATT 59.185 43.478 2.24 0.00 43.89 1.40
2737 8724 3.565482 AGATGCATACGGCCACTTTATTG 59.435 43.478 2.24 0.00 43.89 1.90
2738 8725 2.992593 TGCATACGGCCACTTTATTGA 58.007 42.857 2.24 0.00 43.89 2.57
2739 8726 3.550820 TGCATACGGCCACTTTATTGAT 58.449 40.909 2.24 0.00 43.89 2.57
2740 8727 3.951037 TGCATACGGCCACTTTATTGATT 59.049 39.130 2.24 0.00 43.89 2.57
2741 8728 5.126779 TGCATACGGCCACTTTATTGATTA 58.873 37.500 2.24 0.00 43.89 1.75
2742 8729 5.767665 TGCATACGGCCACTTTATTGATTAT 59.232 36.000 2.24 0.00 43.89 1.28
2743 8730 6.264292 TGCATACGGCCACTTTATTGATTATT 59.736 34.615 2.24 0.00 43.89 1.40
2744 8731 6.801862 GCATACGGCCACTTTATTGATTATTC 59.198 38.462 2.24 0.00 36.11 1.75
2745 8732 7.308589 GCATACGGCCACTTTATTGATTATTCT 60.309 37.037 2.24 0.00 36.11 2.40
2746 8733 6.619801 ACGGCCACTTTATTGATTATTCTC 57.380 37.500 2.24 0.00 0.00 2.87
2747 8734 5.236478 ACGGCCACTTTATTGATTATTCTCG 59.764 40.000 2.24 0.00 0.00 4.04
2748 8735 5.465390 CGGCCACTTTATTGATTATTCTCGA 59.535 40.000 2.24 0.00 0.00 4.04
2749 8736 6.346919 CGGCCACTTTATTGATTATTCTCGAG 60.347 42.308 5.93 5.93 0.00 4.04
2750 8737 6.073003 GGCCACTTTATTGATTATTCTCGAGG 60.073 42.308 13.56 0.00 0.00 4.63
2751 8738 6.706270 GCCACTTTATTGATTATTCTCGAGGA 59.294 38.462 13.56 3.44 0.00 3.71
2752 8739 7.307455 GCCACTTTATTGATTATTCTCGAGGAC 60.307 40.741 13.56 0.00 0.00 3.85
2753 8740 7.171678 CCACTTTATTGATTATTCTCGAGGACC 59.828 40.741 13.56 0.00 0.00 4.46
2754 8741 7.928706 CACTTTATTGATTATTCTCGAGGACCT 59.071 37.037 13.56 0.00 0.00 3.85
2755 8742 8.487028 ACTTTATTGATTATTCTCGAGGACCTT 58.513 33.333 13.56 0.00 0.00 3.50
2756 8743 9.982651 CTTTATTGATTATTCTCGAGGACCTTA 57.017 33.333 13.56 0.00 0.00 2.69
2757 8744 9.760077 TTTATTGATTATTCTCGAGGACCTTAC 57.240 33.333 13.56 0.40 0.00 2.34
2758 8745 6.785337 TTGATTATTCTCGAGGACCTTACA 57.215 37.500 13.56 3.04 0.00 2.41
2759 8746 6.785337 TGATTATTCTCGAGGACCTTACAA 57.215 37.500 13.56 0.00 0.00 2.41
2760 8747 7.177832 TGATTATTCTCGAGGACCTTACAAA 57.822 36.000 13.56 0.00 0.00 2.83
2761 8748 7.265673 TGATTATTCTCGAGGACCTTACAAAG 58.734 38.462 13.56 0.00 0.00 2.77
2762 8749 6.600882 TTATTCTCGAGGACCTTACAAAGT 57.399 37.500 13.56 0.00 0.00 2.66
2763 8750 7.707624 TTATTCTCGAGGACCTTACAAAGTA 57.292 36.000 13.56 0.00 0.00 2.24
2764 8751 6.793505 ATTCTCGAGGACCTTACAAAGTAT 57.206 37.500 13.56 0.00 0.00 2.12
2765 8752 6.600882 TTCTCGAGGACCTTACAAAGTATT 57.399 37.500 13.56 0.00 0.00 1.89
2766 8753 7.707624 TTCTCGAGGACCTTACAAAGTATTA 57.292 36.000 13.56 0.00 0.00 0.98
2767 8754 7.093322 TCTCGAGGACCTTACAAAGTATTAC 57.907 40.000 13.56 0.00 0.00 1.89
2768 8755 6.660521 TCTCGAGGACCTTACAAAGTATTACA 59.339 38.462 13.56 0.00 0.00 2.41
2769 8756 7.177216 TCTCGAGGACCTTACAAAGTATTACAA 59.823 37.037 13.56 0.00 0.00 2.41
2770 8757 7.092716 TCGAGGACCTTACAAAGTATTACAAC 58.907 38.462 0.00 0.00 0.00 3.32
2771 8758 6.869913 CGAGGACCTTACAAAGTATTACAACA 59.130 38.462 0.00 0.00 0.00 3.33
2772 8759 7.385752 CGAGGACCTTACAAAGTATTACAACAA 59.614 37.037 0.00 0.00 0.00 2.83
2773 8760 9.227777 GAGGACCTTACAAAGTATTACAACAAT 57.772 33.333 0.00 0.00 0.00 2.71
2774 8761 9.010029 AGGACCTTACAAAGTATTACAACAATG 57.990 33.333 0.00 0.00 0.00 2.82
2775 8762 8.789762 GGACCTTACAAAGTATTACAACAATGT 58.210 33.333 0.00 0.00 43.74 2.71
2776 8763 9.607285 GACCTTACAAAGTATTACAACAATGTG 57.393 33.333 0.00 0.00 40.84 3.21
2777 8764 9.127277 ACCTTACAAAGTATTACAACAATGTGT 57.873 29.630 0.00 0.00 40.84 3.72
2778 8765 9.607285 CCTTACAAAGTATTACAACAATGTGTC 57.393 33.333 0.00 0.00 40.84 3.67
2781 8768 8.445275 ACAAAGTATTACAACAATGTGTCTGA 57.555 30.769 0.00 0.00 40.84 3.27
2782 8769 8.559536 ACAAAGTATTACAACAATGTGTCTGAG 58.440 33.333 0.00 0.00 40.84 3.35
2783 8770 8.559536 CAAAGTATTACAACAATGTGTCTGAGT 58.440 33.333 0.00 0.00 40.84 3.41
2784 8771 7.891183 AGTATTACAACAATGTGTCTGAGTC 57.109 36.000 0.00 0.00 40.84 3.36
2785 8772 6.874134 AGTATTACAACAATGTGTCTGAGTCC 59.126 38.462 0.00 0.00 40.84 3.85
2786 8773 3.558931 ACAACAATGTGTCTGAGTCCA 57.441 42.857 0.00 0.00 38.69 4.02
2787 8774 3.206150 ACAACAATGTGTCTGAGTCCAC 58.794 45.455 0.00 0.00 38.69 4.02
2788 8775 2.549754 CAACAATGTGTCTGAGTCCACC 59.450 50.000 0.00 0.00 0.00 4.61
2789 8776 1.768275 ACAATGTGTCTGAGTCCACCA 59.232 47.619 0.00 0.00 0.00 4.17
2790 8777 2.373169 ACAATGTGTCTGAGTCCACCAT 59.627 45.455 0.00 0.00 0.00 3.55
2791 8778 3.005554 CAATGTGTCTGAGTCCACCATC 58.994 50.000 3.38 0.00 0.00 3.51
2792 8779 2.015456 TGTGTCTGAGTCCACCATCT 57.985 50.000 3.38 0.00 0.00 2.90
2793 8780 2.329267 TGTGTCTGAGTCCACCATCTT 58.671 47.619 3.38 0.00 0.00 2.40
2794 8781 2.037641 TGTGTCTGAGTCCACCATCTTG 59.962 50.000 3.38 0.00 0.00 3.02
2795 8782 1.625315 TGTCTGAGTCCACCATCTTGG 59.375 52.381 0.00 0.00 45.02 3.61
2796 8783 0.615331 TCTGAGTCCACCATCTTGGC 59.385 55.000 0.00 0.00 42.67 4.52
2797 8784 0.325933 CTGAGTCCACCATCTTGGCA 59.674 55.000 0.00 0.00 42.67 4.92
2798 8785 0.770499 TGAGTCCACCATCTTGGCAA 59.230 50.000 0.00 0.00 42.67 4.52
2799 8786 1.168714 GAGTCCACCATCTTGGCAAC 58.831 55.000 0.00 0.00 42.67 4.17
2818 8805 5.091261 CAACATATGCCCCTACTCCTATC 57.909 47.826 1.58 0.00 0.00 2.08
2819 8806 3.725634 ACATATGCCCCTACTCCTATCC 58.274 50.000 1.58 0.00 0.00 2.59
2820 8807 3.079072 ACATATGCCCCTACTCCTATCCA 59.921 47.826 1.58 0.00 0.00 3.41
2821 8808 2.815357 ATGCCCCTACTCCTATCCAA 57.185 50.000 0.00 0.00 0.00 3.53
2822 8809 2.579624 TGCCCCTACTCCTATCCAAA 57.420 50.000 0.00 0.00 0.00 3.28
2823 8810 2.853430 TGCCCCTACTCCTATCCAAAA 58.147 47.619 0.00 0.00 0.00 2.44
2824 8811 3.403322 TGCCCCTACTCCTATCCAAAAT 58.597 45.455 0.00 0.00 0.00 1.82
2825 8812 3.138283 TGCCCCTACTCCTATCCAAAATG 59.862 47.826 0.00 0.00 0.00 2.32
2826 8813 3.394606 GCCCCTACTCCTATCCAAAATGA 59.605 47.826 0.00 0.00 0.00 2.57
2827 8814 4.043435 GCCCCTACTCCTATCCAAAATGAT 59.957 45.833 0.00 0.00 0.00 2.45
2828 8815 5.564550 CCCCTACTCCTATCCAAAATGATG 58.435 45.833 0.00 0.00 0.00 3.07
2829 8816 5.310594 CCCCTACTCCTATCCAAAATGATGA 59.689 44.000 0.00 0.00 0.00 2.92
2830 8817 6.183361 CCCCTACTCCTATCCAAAATGATGAA 60.183 42.308 0.00 0.00 0.00 2.57
2831 8818 6.939163 CCCTACTCCTATCCAAAATGATGAAG 59.061 42.308 0.00 0.00 0.00 3.02
2832 8819 6.939163 CCTACTCCTATCCAAAATGATGAAGG 59.061 42.308 0.00 0.00 0.00 3.46
2833 8820 5.699143 ACTCCTATCCAAAATGATGAAGGG 58.301 41.667 0.00 0.00 0.00 3.95
2834 8821 5.065613 TCCTATCCAAAATGATGAAGGGG 57.934 43.478 0.00 0.00 0.00 4.79
2835 8822 4.482025 TCCTATCCAAAATGATGAAGGGGT 59.518 41.667 0.00 0.00 0.00 4.95
2836 8823 4.586001 CCTATCCAAAATGATGAAGGGGTG 59.414 45.833 0.00 0.00 0.00 4.61
2837 8824 2.178580 TCCAAAATGATGAAGGGGTGC 58.821 47.619 0.00 0.00 0.00 5.01
2838 8825 2.181975 CCAAAATGATGAAGGGGTGCT 58.818 47.619 0.00 0.00 0.00 4.40
2839 8826 3.011144 TCCAAAATGATGAAGGGGTGCTA 59.989 43.478 0.00 0.00 0.00 3.49
2840 8827 3.382546 CCAAAATGATGAAGGGGTGCTAG 59.617 47.826 0.00 0.00 0.00 3.42
2841 8828 2.355010 AATGATGAAGGGGTGCTAGC 57.645 50.000 8.10 8.10 0.00 3.42
2842 8829 1.516110 ATGATGAAGGGGTGCTAGCT 58.484 50.000 17.23 0.00 0.00 3.32
2843 8830 0.543277 TGATGAAGGGGTGCTAGCTG 59.457 55.000 17.23 0.00 0.00 4.24
2844 8831 0.179034 GATGAAGGGGTGCTAGCTGG 60.179 60.000 17.23 0.00 0.00 4.85
2845 8832 1.639635 ATGAAGGGGTGCTAGCTGGG 61.640 60.000 17.23 0.00 0.00 4.45
2846 8833 3.705934 GAAGGGGTGCTAGCTGGGC 62.706 68.421 17.23 0.81 0.00 5.36
2849 8836 4.803908 GGGTGCTAGCTGGGCCAC 62.804 72.222 17.23 4.06 0.00 5.01
2850 8837 3.721706 GGTGCTAGCTGGGCCACT 61.722 66.667 17.23 8.06 0.00 4.00
2851 8838 2.367202 GGTGCTAGCTGGGCCACTA 61.367 63.158 17.23 8.85 0.00 2.74
2852 8839 1.153349 GTGCTAGCTGGGCCACTAC 60.153 63.158 17.23 5.65 0.00 2.73
2853 8840 2.367202 TGCTAGCTGGGCCACTACC 61.367 63.158 17.23 1.99 0.00 3.18
2861 8848 4.090723 GGCCACTACCCAAACCAC 57.909 61.111 0.00 0.00 0.00 4.16
2862 8849 1.458927 GGCCACTACCCAAACCACT 59.541 57.895 0.00 0.00 0.00 4.00
2863 8850 0.608308 GGCCACTACCCAAACCACTC 60.608 60.000 0.00 0.00 0.00 3.51
2864 8851 0.109723 GCCACTACCCAAACCACTCA 59.890 55.000 0.00 0.00 0.00 3.41
2865 8852 1.271926 GCCACTACCCAAACCACTCAT 60.272 52.381 0.00 0.00 0.00 2.90
2866 8853 2.711542 CCACTACCCAAACCACTCATC 58.288 52.381 0.00 0.00 0.00 2.92
2867 8854 2.305927 CCACTACCCAAACCACTCATCT 59.694 50.000 0.00 0.00 0.00 2.90
2868 8855 3.517901 CCACTACCCAAACCACTCATCTA 59.482 47.826 0.00 0.00 0.00 1.98
2869 8856 4.019681 CCACTACCCAAACCACTCATCTAA 60.020 45.833 0.00 0.00 0.00 2.10
2870 8857 5.178797 CACTACCCAAACCACTCATCTAAG 58.821 45.833 0.00 0.00 0.00 2.18
2871 8858 3.073274 ACCCAAACCACTCATCTAAGC 57.927 47.619 0.00 0.00 0.00 3.09
2872 8859 2.290960 ACCCAAACCACTCATCTAAGCC 60.291 50.000 0.00 0.00 0.00 4.35
2873 8860 2.025887 CCCAAACCACTCATCTAAGCCT 60.026 50.000 0.00 0.00 0.00 4.58
2874 8861 3.199946 CCCAAACCACTCATCTAAGCCTA 59.800 47.826 0.00 0.00 0.00 3.93
2875 8862 4.324254 CCCAAACCACTCATCTAAGCCTAA 60.324 45.833 0.00 0.00 0.00 2.69
2876 8863 4.636206 CCAAACCACTCATCTAAGCCTAAC 59.364 45.833 0.00 0.00 0.00 2.34
2877 8864 5.245531 CAAACCACTCATCTAAGCCTAACA 58.754 41.667 0.00 0.00 0.00 2.41
2878 8865 5.700402 AACCACTCATCTAAGCCTAACAT 57.300 39.130 0.00 0.00 0.00 2.71
2879 8866 5.283457 ACCACTCATCTAAGCCTAACATC 57.717 43.478 0.00 0.00 0.00 3.06
2880 8867 4.716784 ACCACTCATCTAAGCCTAACATCA 59.283 41.667 0.00 0.00 0.00 3.07
2881 8868 5.189736 ACCACTCATCTAAGCCTAACATCAA 59.810 40.000 0.00 0.00 0.00 2.57
2882 8869 6.115446 CCACTCATCTAAGCCTAACATCAAA 58.885 40.000 0.00 0.00 0.00 2.69
2883 8870 6.599244 CCACTCATCTAAGCCTAACATCAAAA 59.401 38.462 0.00 0.00 0.00 2.44
2884 8871 7.201679 CCACTCATCTAAGCCTAACATCAAAAG 60.202 40.741 0.00 0.00 0.00 2.27
2885 8872 6.317391 ACTCATCTAAGCCTAACATCAAAAGC 59.683 38.462 0.00 0.00 0.00 3.51
2886 8873 5.590259 TCATCTAAGCCTAACATCAAAAGCC 59.410 40.000 0.00 0.00 0.00 4.35
2887 8874 3.938963 TCTAAGCCTAACATCAAAAGCCG 59.061 43.478 0.00 0.00 0.00 5.52
2888 8875 1.463674 AGCCTAACATCAAAAGCCGG 58.536 50.000 0.00 0.00 0.00 6.13
2889 8876 1.004277 AGCCTAACATCAAAAGCCGGA 59.996 47.619 5.05 0.00 0.00 5.14
2890 8877 1.816224 GCCTAACATCAAAAGCCGGAA 59.184 47.619 5.05 0.00 0.00 4.30
2891 8878 2.159379 GCCTAACATCAAAAGCCGGAAG 60.159 50.000 5.05 0.00 0.00 3.46
2892 8879 2.159379 CCTAACATCAAAAGCCGGAAGC 60.159 50.000 5.05 0.00 44.25 3.86
2893 8880 0.603065 AACATCAAAAGCCGGAAGCC 59.397 50.000 5.05 0.00 45.47 4.35
2913 8900 1.095600 GAAACTCATTCGGAAGCCCC 58.904 55.000 0.00 0.00 0.00 5.80
2914 8901 0.404040 AAACTCATTCGGAAGCCCCA 59.596 50.000 0.00 0.00 34.14 4.96
2915 8902 0.035056 AACTCATTCGGAAGCCCCAG 60.035 55.000 0.00 0.00 34.14 4.45
2916 8903 1.821332 CTCATTCGGAAGCCCCAGC 60.821 63.158 0.00 0.00 40.32 4.85
2917 8904 2.830370 CATTCGGAAGCCCCAGCC 60.830 66.667 0.00 0.00 41.25 4.85
2918 8905 4.489771 ATTCGGAAGCCCCAGCCG 62.490 66.667 0.00 0.00 46.08 5.52
2927 8914 3.479203 CCCCAGCCGAGCCACATA 61.479 66.667 0.00 0.00 0.00 2.29
2928 8915 2.203070 CCCAGCCGAGCCACATAC 60.203 66.667 0.00 0.00 0.00 2.39
2929 8916 2.203070 CCAGCCGAGCCACATACC 60.203 66.667 0.00 0.00 0.00 2.73
2930 8917 2.586079 CAGCCGAGCCACATACCG 60.586 66.667 0.00 0.00 0.00 4.02
2931 8918 3.849951 AGCCGAGCCACATACCGG 61.850 66.667 0.00 0.00 44.34 5.28
2932 8919 4.910585 GCCGAGCCACATACCGGG 62.911 72.222 6.32 0.00 42.02 5.73
2933 8920 3.467226 CCGAGCCACATACCGGGT 61.467 66.667 6.32 4.46 38.42 5.28
2934 8921 2.106332 CGAGCCACATACCGGGTC 59.894 66.667 6.32 0.00 45.62 4.46
2935 8922 2.423898 CGAGCCACATACCGGGTCT 61.424 63.158 6.32 0.00 46.65 3.85
2936 8923 1.144057 GAGCCACATACCGGGTCTG 59.856 63.158 6.32 7.03 45.62 3.51
2937 8924 2.189521 GCCACATACCGGGTCTGG 59.810 66.667 15.92 13.91 0.00 3.86
2938 8925 2.908015 CCACATACCGGGTCTGGG 59.092 66.667 15.92 12.10 0.00 4.45
2939 8926 2.742116 CCACATACCGGGTCTGGGG 61.742 68.421 18.26 18.26 27.30 4.96
2940 8927 3.087906 ACATACCGGGTCTGGGGC 61.088 66.667 15.92 0.00 0.00 5.80
2941 8928 3.087253 CATACCGGGTCTGGGGCA 61.087 66.667 6.32 0.00 0.00 5.36
2942 8929 3.087906 ATACCGGGTCTGGGGCAC 61.088 66.667 6.32 0.00 0.00 5.01
2943 8930 3.935456 ATACCGGGTCTGGGGCACA 62.935 63.158 6.32 0.00 0.00 4.57
2945 8932 4.047125 CCGGGTCTGGGGCACAAT 62.047 66.667 0.00 0.00 0.00 2.71
2946 8933 2.438434 CGGGTCTGGGGCACAATC 60.438 66.667 0.00 0.00 0.00 2.67
2947 8934 2.043953 GGGTCTGGGGCACAATCC 60.044 66.667 0.00 0.00 0.00 3.01
2948 8935 2.438434 GGTCTGGGGCACAATCCG 60.438 66.667 0.00 0.00 0.00 4.18
2949 8936 2.668632 GTCTGGGGCACAATCCGA 59.331 61.111 0.00 0.00 0.00 4.55
2950 8937 1.224592 GTCTGGGGCACAATCCGAT 59.775 57.895 0.00 0.00 0.00 4.18
2951 8938 0.815615 GTCTGGGGCACAATCCGATC 60.816 60.000 0.00 0.00 0.00 3.69
2952 8939 1.224315 CTGGGGCACAATCCGATCA 59.776 57.895 0.00 0.00 0.00 2.92
2953 8940 0.816825 CTGGGGCACAATCCGATCAG 60.817 60.000 0.00 0.00 0.00 2.90
2954 8941 1.271127 TGGGGCACAATCCGATCAGA 61.271 55.000 0.00 0.00 0.00 3.27
2955 8942 0.815615 GGGGCACAATCCGATCAGAC 60.816 60.000 0.00 0.00 0.00 3.51
2956 8943 1.154205 GGGCACAATCCGATCAGACG 61.154 60.000 0.00 0.00 0.00 4.18
2957 8944 1.638467 GCACAATCCGATCAGACGC 59.362 57.895 0.00 0.00 0.00 5.19
2958 8945 1.083806 GCACAATCCGATCAGACGCA 61.084 55.000 0.00 0.00 0.00 5.24
2959 8946 0.647410 CACAATCCGATCAGACGCAC 59.353 55.000 0.00 0.00 0.00 5.34
2960 8947 0.532573 ACAATCCGATCAGACGCACT 59.467 50.000 0.00 0.00 0.00 4.40
2961 8948 1.203928 CAATCCGATCAGACGCACTC 58.796 55.000 0.00 0.00 0.00 3.51
2962 8949 0.248661 AATCCGATCAGACGCACTCG 60.249 55.000 0.00 0.00 42.43 4.18
2972 8959 3.450152 CGCACTCGTGTGTCGTCG 61.450 66.667 18.01 9.68 45.44 5.12
2973 8960 3.753539 GCACTCGTGTGTCGTCGC 61.754 66.667 18.01 0.00 45.44 5.19
2974 8961 3.097728 CACTCGTGTGTCGTCGCC 61.098 66.667 9.42 0.00 39.24 5.54
2975 8962 4.678269 ACTCGTGTGTCGTCGCCG 62.678 66.667 0.00 0.00 40.80 6.46
2981 8968 4.796231 GTGTCGTCGCCGCCATCT 62.796 66.667 0.00 0.00 0.00 2.90
2982 8969 4.063967 TGTCGTCGCCGCCATCTT 62.064 61.111 0.00 0.00 0.00 2.40
2983 8970 3.255379 GTCGTCGCCGCCATCTTC 61.255 66.667 0.00 0.00 0.00 2.87
2984 8971 4.508128 TCGTCGCCGCCATCTTCC 62.508 66.667 0.00 0.00 0.00 3.46
2985 8972 4.812476 CGTCGCCGCCATCTTCCA 62.812 66.667 0.00 0.00 0.00 3.53
2986 8973 3.195698 GTCGCCGCCATCTTCCAC 61.196 66.667 0.00 0.00 0.00 4.02
2987 8974 3.700970 TCGCCGCCATCTTCCACA 61.701 61.111 0.00 0.00 0.00 4.17
2988 8975 3.197790 CGCCGCCATCTTCCACAG 61.198 66.667 0.00 0.00 0.00 3.66
2989 8976 2.825836 GCCGCCATCTTCCACAGG 60.826 66.667 0.00 0.00 0.00 4.00
2990 8977 2.671070 CCGCCATCTTCCACAGGT 59.329 61.111 0.00 0.00 0.00 4.00
2991 8978 1.450312 CCGCCATCTTCCACAGGTC 60.450 63.158 0.00 0.00 0.00 3.85
2992 8979 1.599047 CGCCATCTTCCACAGGTCT 59.401 57.895 0.00 0.00 0.00 3.85
2993 8980 0.036010 CGCCATCTTCCACAGGTCTT 60.036 55.000 0.00 0.00 0.00 3.01
2994 8981 1.611673 CGCCATCTTCCACAGGTCTTT 60.612 52.381 0.00 0.00 0.00 2.52
2995 8982 2.354704 CGCCATCTTCCACAGGTCTTTA 60.355 50.000 0.00 0.00 0.00 1.85
2996 8983 3.274288 GCCATCTTCCACAGGTCTTTAG 58.726 50.000 0.00 0.00 0.00 1.85
2997 8984 3.055094 GCCATCTTCCACAGGTCTTTAGA 60.055 47.826 0.00 0.00 0.00 2.10
2998 8985 4.384647 GCCATCTTCCACAGGTCTTTAGAT 60.385 45.833 0.00 0.00 0.00 1.98
2999 8986 5.363939 CCATCTTCCACAGGTCTTTAGATC 58.636 45.833 0.00 0.00 0.00 2.75
3000 8987 5.104776 CCATCTTCCACAGGTCTTTAGATCA 60.105 44.000 0.00 0.00 0.00 2.92
3001 8988 6.409005 CCATCTTCCACAGGTCTTTAGATCAT 60.409 42.308 0.00 0.00 0.00 2.45
3002 8989 7.202038 CCATCTTCCACAGGTCTTTAGATCATA 60.202 40.741 0.00 0.00 0.00 2.15
3003 8990 7.921041 TCTTCCACAGGTCTTTAGATCATAT 57.079 36.000 0.00 0.00 0.00 1.78
3004 8991 8.324191 TCTTCCACAGGTCTTTAGATCATATT 57.676 34.615 0.00 0.00 0.00 1.28
3005 8992 8.206867 TCTTCCACAGGTCTTTAGATCATATTG 58.793 37.037 0.00 0.00 0.00 1.90
3006 8993 7.675161 TCCACAGGTCTTTAGATCATATTGA 57.325 36.000 0.00 0.00 0.00 2.57
3007 8994 7.730084 TCCACAGGTCTTTAGATCATATTGAG 58.270 38.462 0.00 0.00 0.00 3.02
3008 8995 6.933521 CCACAGGTCTTTAGATCATATTGAGG 59.066 42.308 0.00 0.00 0.00 3.86
3009 8996 6.426328 CACAGGTCTTTAGATCATATTGAGGC 59.574 42.308 0.00 0.00 0.00 4.70
3010 8997 6.328672 ACAGGTCTTTAGATCATATTGAGGCT 59.671 38.462 0.00 0.00 0.00 4.58
3011 8998 7.147408 ACAGGTCTTTAGATCATATTGAGGCTT 60.147 37.037 0.00 0.00 0.00 4.35
3012 8999 7.387397 CAGGTCTTTAGATCATATTGAGGCTTC 59.613 40.741 0.00 0.00 0.00 3.86
3013 9000 7.292120 AGGTCTTTAGATCATATTGAGGCTTCT 59.708 37.037 0.00 0.00 0.00 2.85
3014 9001 8.589338 GGTCTTTAGATCATATTGAGGCTTCTA 58.411 37.037 0.00 0.00 0.00 2.10
3015 9002 9.418045 GTCTTTAGATCATATTGAGGCTTCTAC 57.582 37.037 0.00 0.00 0.00 2.59
3016 9003 8.589338 TCTTTAGATCATATTGAGGCTTCTACC 58.411 37.037 0.00 0.00 0.00 3.18
3017 9004 8.497910 TTTAGATCATATTGAGGCTTCTACCT 57.502 34.615 0.00 0.00 45.04 3.08
3018 9005 8.497910 TTAGATCATATTGAGGCTTCTACCTT 57.502 34.615 0.00 0.00 41.32 3.50
3019 9006 6.767456 AGATCATATTGAGGCTTCTACCTTG 58.233 40.000 0.00 0.00 41.32 3.61
3020 9007 5.957771 TCATATTGAGGCTTCTACCTTGT 57.042 39.130 0.00 0.00 41.32 3.16
3021 9008 5.918608 TCATATTGAGGCTTCTACCTTGTC 58.081 41.667 0.00 0.00 41.32 3.18
3022 9009 5.663106 TCATATTGAGGCTTCTACCTTGTCT 59.337 40.000 0.00 0.00 41.32 3.41
3023 9010 3.685139 TTGAGGCTTCTACCTTGTCTG 57.315 47.619 0.00 0.00 41.32 3.51
3024 9011 1.902508 TGAGGCTTCTACCTTGTCTGG 59.097 52.381 0.00 0.00 41.32 3.86
3025 9012 0.615850 AGGCTTCTACCTTGTCTGGC 59.384 55.000 0.00 0.00 36.28 4.85
3026 9013 0.393132 GGCTTCTACCTTGTCTGGCC 60.393 60.000 0.00 0.00 0.00 5.36
3027 9014 0.324943 GCTTCTACCTTGTCTGGCCA 59.675 55.000 4.71 4.71 0.00 5.36
3028 9015 1.946283 GCTTCTACCTTGTCTGGCCAC 60.946 57.143 0.00 0.00 0.00 5.01
3029 9016 1.625818 CTTCTACCTTGTCTGGCCACT 59.374 52.381 0.00 0.00 0.00 4.00
3030 9017 1.267121 TCTACCTTGTCTGGCCACTC 58.733 55.000 0.00 0.00 0.00 3.51
3031 9018 0.976641 CTACCTTGTCTGGCCACTCA 59.023 55.000 0.00 0.14 0.00 3.41
3032 9019 0.976641 TACCTTGTCTGGCCACTCAG 59.023 55.000 0.00 0.00 36.17 3.35
3033 9020 1.673665 CCTTGTCTGGCCACTCAGC 60.674 63.158 0.00 0.00 34.91 4.26
3041 9028 2.887568 GCCACTCAGCCATCGACG 60.888 66.667 0.00 0.00 0.00 5.12
3042 9029 2.573869 CCACTCAGCCATCGACGT 59.426 61.111 0.00 0.00 0.00 4.34
3043 9030 1.517257 CCACTCAGCCATCGACGTC 60.517 63.158 5.18 5.18 0.00 4.34
3044 9031 1.212751 CACTCAGCCATCGACGTCA 59.787 57.895 17.16 3.13 0.00 4.35
3045 9032 1.073216 CACTCAGCCATCGACGTCAC 61.073 60.000 17.16 0.00 0.00 3.67
3046 9033 1.517257 CTCAGCCATCGACGTCACC 60.517 63.158 17.16 0.00 0.00 4.02
3047 9034 2.212900 CTCAGCCATCGACGTCACCA 62.213 60.000 17.16 0.00 0.00 4.17
3048 9035 1.153568 CAGCCATCGACGTCACCAT 60.154 57.895 17.16 0.84 0.00 3.55
3049 9036 1.153568 AGCCATCGACGTCACCATG 60.154 57.895 17.16 13.34 0.00 3.66
3050 9037 1.153647 GCCATCGACGTCACCATGA 60.154 57.895 17.16 4.35 0.00 3.07
3051 9038 1.421410 GCCATCGACGTCACCATGAC 61.421 60.000 17.16 3.17 43.65 3.06
3058 9045 3.876300 GTCACCATGACGCCAGAC 58.124 61.111 0.00 0.00 37.67 3.51
3059 9046 1.005037 GTCACCATGACGCCAGACA 60.005 57.895 0.00 0.00 37.67 3.41
3060 9047 1.016130 GTCACCATGACGCCAGACAG 61.016 60.000 0.00 0.00 37.67 3.51
3061 9048 2.046892 ACCATGACGCCAGACAGC 60.047 61.111 0.00 0.00 0.00 4.40
3062 9049 2.046988 CCATGACGCCAGACAGCA 60.047 61.111 0.00 0.00 0.00 4.41
3063 9050 1.672030 CCATGACGCCAGACAGCAA 60.672 57.895 0.00 0.00 0.00 3.91
3064 9051 1.499056 CATGACGCCAGACAGCAAC 59.501 57.895 0.00 0.00 0.00 4.17
3065 9052 1.672356 ATGACGCCAGACAGCAACC 60.672 57.895 0.00 0.00 0.00 3.77
3066 9053 2.031163 GACGCCAGACAGCAACCT 59.969 61.111 0.00 0.00 0.00 3.50
3067 9054 2.029844 GACGCCAGACAGCAACCTC 61.030 63.158 0.00 0.00 0.00 3.85
3068 9055 2.743928 CGCCAGACAGCAACCTCC 60.744 66.667 0.00 0.00 0.00 4.30
3069 9056 2.753029 GCCAGACAGCAACCTCCT 59.247 61.111 0.00 0.00 0.00 3.69
3070 9057 1.376553 GCCAGACAGCAACCTCCTC 60.377 63.158 0.00 0.00 0.00 3.71
3071 9058 1.298014 CCAGACAGCAACCTCCTCC 59.702 63.158 0.00 0.00 0.00 4.30
3072 9059 1.197430 CCAGACAGCAACCTCCTCCT 61.197 60.000 0.00 0.00 0.00 3.69
3073 9060 0.036577 CAGACAGCAACCTCCTCCTG 60.037 60.000 0.00 0.00 0.00 3.86
3074 9061 1.376553 GACAGCAACCTCCTCCTGC 60.377 63.158 0.00 0.00 36.29 4.85
3075 9062 2.435586 CAGCAACCTCCTCCTGCG 60.436 66.667 0.00 0.00 41.05 5.18
3076 9063 4.400961 AGCAACCTCCTCCTGCGC 62.401 66.667 0.00 0.00 41.05 6.09
3078 9065 4.069232 CAACCTCCTCCTGCGCGA 62.069 66.667 12.10 0.00 0.00 5.87
3079 9066 3.764466 AACCTCCTCCTGCGCGAG 61.764 66.667 12.10 3.83 0.00 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 72 1.164041 ACAAACTTCAACCGGGCGAG 61.164 55.000 6.32 0.06 0.00 5.03
107 109 8.646900 AGAATGGATTTTAAGGCAAAACAACTA 58.353 29.630 0.00 0.00 38.90 2.24
113 115 8.970859 TTTTCAGAATGGATTTTAAGGCAAAA 57.029 26.923 0.00 0.00 37.32 2.44
114 116 9.001542 CATTTTCAGAATGGATTTTAAGGCAAA 57.998 29.630 0.00 0.00 36.16 3.68
115 117 8.550710 CATTTTCAGAATGGATTTTAAGGCAA 57.449 30.769 0.00 0.00 36.16 4.52
130 2718 7.577303 AGCAGATATAAGGTCCATTTTCAGAA 58.423 34.615 0.00 0.00 0.00 3.02
131 2719 7.141758 AGCAGATATAAGGTCCATTTTCAGA 57.858 36.000 0.00 0.00 0.00 3.27
167 2755 6.254804 GGCAATAATACCGTTTTTAGGCAAAG 59.745 38.462 0.00 0.00 0.00 2.77
225 2813 4.065281 GGCGGACTGCTACGTGGT 62.065 66.667 6.16 0.00 45.43 4.16
226 2814 3.701604 GAGGCGGACTGCTACGTGG 62.702 68.421 6.16 0.00 45.43 4.94
1232 4588 2.260481 GAGACGGACGAAAGGACATTC 58.740 52.381 0.00 0.00 0.00 2.67
1235 4591 0.886043 TCGAGACGGACGAAAGGACA 60.886 55.000 0.00 0.00 36.84 4.02
1316 4672 3.458163 CCCTCGCCGGAGTAGCAA 61.458 66.667 5.05 0.00 38.70 3.91
1605 4964 2.752238 CGCCACGAGAGAGGGAGT 60.752 66.667 0.00 0.00 42.59 3.85
1645 5004 1.656263 GTCGACGTCTCGCACAACA 60.656 57.895 14.70 0.00 39.96 3.33
1728 5087 3.470645 AGAGTCTGCCGTTAACAAAGT 57.529 42.857 6.39 0.00 0.00 2.66
1736 5095 2.164624 GTCATCTGTAGAGTCTGCCGTT 59.835 50.000 1.86 0.00 0.00 4.44
1748 5107 3.006430 TCAAAGAAGCCGTGTCATCTGTA 59.994 43.478 0.00 0.00 0.00 2.74
1922 5281 4.730966 ACATGGGTACGAGTATGATCTCT 58.269 43.478 0.00 0.00 32.83 3.10
1931 5290 4.280436 TGAATTGAACATGGGTACGAGT 57.720 40.909 0.00 0.00 0.00 4.18
2013 5379 8.627403 CACAAACTATGGATTGCTAATTCTCAT 58.373 33.333 0.00 0.00 0.00 2.90
2234 6006 4.513692 GCACACTAAAGTTGGATGTACACA 59.486 41.667 0.00 0.00 0.00 3.72
2269 6713 4.625311 TGCACTATACAAGATCAACGTGTG 59.375 41.667 0.00 0.00 40.93 3.82
2275 6719 6.394809 TCGTCTTTGCACTATACAAGATCAA 58.605 36.000 0.00 0.00 0.00 2.57
2329 6782 4.378978 CGAAGCCAAAACGAATATCCACAA 60.379 41.667 0.00 0.00 0.00 3.33
2350 6803 4.245251 TCAGTAGCATATATAGGCCCGA 57.755 45.455 15.41 4.91 32.62 5.14
2358 6811 9.376075 GACTGCACATATTTCAGTAGCATATAT 57.624 33.333 0.00 0.00 40.74 0.86
2401 6854 2.546368 GGACAATACAACTTGACGCACA 59.454 45.455 0.00 0.00 0.00 4.57
2509 8349 0.033796 TCCCCGTCTAGACCAACGAT 60.034 55.000 17.23 0.00 41.29 3.73
2641 8628 4.150359 CGGTACCATAGGGAGTACAGAAT 58.850 47.826 13.54 0.00 40.51 2.40
2675 8662 4.227527 GGGGTCATCCTCCTTTTCTAGAAA 59.772 45.833 13.99 13.99 35.33 2.52
2676 8663 3.780850 GGGGTCATCCTCCTTTTCTAGAA 59.219 47.826 0.00 0.00 35.33 2.10
2677 8664 3.385115 GGGGTCATCCTCCTTTTCTAGA 58.615 50.000 0.00 0.00 35.33 2.43
2678 8665 2.103263 CGGGGTCATCCTCCTTTTCTAG 59.897 54.545 0.00 0.00 35.33 2.43
2679 8666 2.116238 CGGGGTCATCCTCCTTTTCTA 58.884 52.381 0.00 0.00 35.33 2.10
2680 8667 0.912486 CGGGGTCATCCTCCTTTTCT 59.088 55.000 0.00 0.00 35.33 2.52
2681 8668 0.107165 CCGGGGTCATCCTCCTTTTC 60.107 60.000 0.00 0.00 35.33 2.29
2682 8669 1.999346 CCGGGGTCATCCTCCTTTT 59.001 57.895 0.00 0.00 35.33 2.27
2683 8670 2.680370 GCCGGGGTCATCCTCCTTT 61.680 63.158 2.18 0.00 35.33 3.11
2684 8671 3.090532 GCCGGGGTCATCCTCCTT 61.091 66.667 2.18 0.00 35.33 3.36
2687 8674 3.551407 GAGGCCGGGGTCATCCTC 61.551 72.222 2.18 5.59 38.40 3.71
2688 8675 4.095400 AGAGGCCGGGGTCATCCT 62.095 66.667 2.18 0.00 35.33 3.24
2689 8676 3.866582 CAGAGGCCGGGGTCATCC 61.867 72.222 2.18 0.00 0.00 3.51
2690 8677 4.554036 GCAGAGGCCGGGGTCATC 62.554 72.222 2.18 0.00 0.00 2.92
2693 8680 4.554036 GATGCAGAGGCCGGGGTC 62.554 72.222 2.18 0.00 40.13 4.46
2695 8682 4.559063 CAGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
2696 8683 3.457625 CTCAGATGCAGAGGCCGGG 62.458 68.421 2.18 0.00 40.13 5.73
2697 8684 2.108566 CTCAGATGCAGAGGCCGG 59.891 66.667 0.00 0.00 40.13 6.13
2698 8685 1.067749 CTCTCAGATGCAGAGGCCG 59.932 63.158 0.00 0.00 40.13 6.13
2699 8686 1.050204 ATCTCTCAGATGCAGAGGCC 58.950 55.000 0.00 0.00 38.39 5.19
2700 8687 2.157834 CATCTCTCAGATGCAGAGGC 57.842 55.000 0.61 0.00 44.69 4.70
2708 8695 1.274728 GGCCGTATGCATCTCTCAGAT 59.725 52.381 0.19 0.00 43.89 2.90
2709 8696 0.676184 GGCCGTATGCATCTCTCAGA 59.324 55.000 0.19 0.00 43.89 3.27
2710 8697 0.390492 TGGCCGTATGCATCTCTCAG 59.610 55.000 0.19 0.00 43.89 3.35
2711 8698 0.104855 GTGGCCGTATGCATCTCTCA 59.895 55.000 0.19 0.00 43.89 3.27
2712 8699 0.390860 AGTGGCCGTATGCATCTCTC 59.609 55.000 0.19 0.00 43.89 3.20
2713 8700 0.833287 AAGTGGCCGTATGCATCTCT 59.167 50.000 0.19 0.00 43.89 3.10
2714 8701 1.668419 AAAGTGGCCGTATGCATCTC 58.332 50.000 0.19 0.00 43.89 2.75
2715 8702 3.492102 ATAAAGTGGCCGTATGCATCT 57.508 42.857 0.19 0.00 43.89 2.90
2716 8703 3.563808 TCAATAAAGTGGCCGTATGCATC 59.436 43.478 0.19 0.00 43.89 3.91
2717 8704 3.550820 TCAATAAAGTGGCCGTATGCAT 58.449 40.909 3.79 3.79 43.89 3.96
2718 8705 2.992593 TCAATAAAGTGGCCGTATGCA 58.007 42.857 0.00 0.00 43.89 3.96
2719 8706 4.568152 AATCAATAAAGTGGCCGTATGC 57.432 40.909 0.00 0.00 40.16 3.14
2720 8707 8.099364 AGAATAATCAATAAAGTGGCCGTATG 57.901 34.615 0.00 0.00 0.00 2.39
2721 8708 7.117812 CGAGAATAATCAATAAAGTGGCCGTAT 59.882 37.037 0.00 0.00 0.00 3.06
2722 8709 6.422701 CGAGAATAATCAATAAAGTGGCCGTA 59.577 38.462 0.00 0.00 0.00 4.02
2723 8710 5.236478 CGAGAATAATCAATAAAGTGGCCGT 59.764 40.000 0.00 0.00 0.00 5.68
2724 8711 5.465390 TCGAGAATAATCAATAAAGTGGCCG 59.535 40.000 0.00 0.00 0.00 6.13
2725 8712 6.073003 CCTCGAGAATAATCAATAAAGTGGCC 60.073 42.308 15.71 0.00 0.00 5.36
2726 8713 6.706270 TCCTCGAGAATAATCAATAAAGTGGC 59.294 38.462 15.71 0.00 0.00 5.01
2727 8714 7.171678 GGTCCTCGAGAATAATCAATAAAGTGG 59.828 40.741 15.71 0.00 0.00 4.00
2728 8715 7.928706 AGGTCCTCGAGAATAATCAATAAAGTG 59.071 37.037 15.71 0.00 0.00 3.16
2729 8716 8.024145 AGGTCCTCGAGAATAATCAATAAAGT 57.976 34.615 15.71 0.00 0.00 2.66
2730 8717 8.894768 AAGGTCCTCGAGAATAATCAATAAAG 57.105 34.615 15.71 0.00 0.00 1.85
2731 8718 9.760077 GTAAGGTCCTCGAGAATAATCAATAAA 57.240 33.333 15.71 0.00 0.00 1.40
2732 8719 8.920174 TGTAAGGTCCTCGAGAATAATCAATAA 58.080 33.333 15.71 0.00 0.00 1.40
2733 8720 8.473358 TGTAAGGTCCTCGAGAATAATCAATA 57.527 34.615 15.71 0.00 0.00 1.90
2734 8721 7.361457 TGTAAGGTCCTCGAGAATAATCAAT 57.639 36.000 15.71 0.00 0.00 2.57
2735 8722 6.785337 TGTAAGGTCCTCGAGAATAATCAA 57.215 37.500 15.71 0.00 0.00 2.57
2736 8723 6.785337 TTGTAAGGTCCTCGAGAATAATCA 57.215 37.500 15.71 2.16 0.00 2.57
2737 8724 7.266400 ACTTTGTAAGGTCCTCGAGAATAATC 58.734 38.462 15.71 0.00 0.00 1.75
2738 8725 7.184067 ACTTTGTAAGGTCCTCGAGAATAAT 57.816 36.000 15.71 0.00 0.00 1.28
2739 8726 6.600882 ACTTTGTAAGGTCCTCGAGAATAA 57.399 37.500 15.71 0.00 0.00 1.40
2740 8727 7.893124 ATACTTTGTAAGGTCCTCGAGAATA 57.107 36.000 15.71 0.00 0.00 1.75
2741 8728 6.793505 ATACTTTGTAAGGTCCTCGAGAAT 57.206 37.500 15.71 0.00 0.00 2.40
2742 8729 6.600882 AATACTTTGTAAGGTCCTCGAGAA 57.399 37.500 15.71 0.00 0.00 2.87
2743 8730 6.660521 TGTAATACTTTGTAAGGTCCTCGAGA 59.339 38.462 15.71 0.00 0.00 4.04
2744 8731 6.860080 TGTAATACTTTGTAAGGTCCTCGAG 58.140 40.000 5.13 5.13 0.00 4.04
2745 8732 6.839124 TGTAATACTTTGTAAGGTCCTCGA 57.161 37.500 0.00 0.00 0.00 4.04
2746 8733 6.869913 TGTTGTAATACTTTGTAAGGTCCTCG 59.130 38.462 0.00 0.00 0.00 4.63
2747 8734 8.611654 TTGTTGTAATACTTTGTAAGGTCCTC 57.388 34.615 0.00 0.00 0.00 3.71
2748 8735 9.010029 CATTGTTGTAATACTTTGTAAGGTCCT 57.990 33.333 0.00 0.00 0.00 3.85
2749 8736 8.789762 ACATTGTTGTAATACTTTGTAAGGTCC 58.210 33.333 0.00 0.00 33.16 4.46
2750 8737 9.607285 CACATTGTTGTAATACTTTGTAAGGTC 57.393 33.333 0.00 0.00 33.76 3.85
2751 8738 9.127277 ACACATTGTTGTAATACTTTGTAAGGT 57.873 29.630 0.00 0.00 33.76 3.50
2752 8739 9.607285 GACACATTGTTGTAATACTTTGTAAGG 57.393 33.333 0.00 0.00 33.76 2.69
2755 8742 9.549078 TCAGACACATTGTTGTAATACTTTGTA 57.451 29.630 0.00 0.00 33.76 2.41
2756 8743 8.445275 TCAGACACATTGTTGTAATACTTTGT 57.555 30.769 0.00 0.00 33.76 2.83
2757 8744 8.559536 ACTCAGACACATTGTTGTAATACTTTG 58.440 33.333 0.00 0.00 33.76 2.77
2758 8745 8.677148 ACTCAGACACATTGTTGTAATACTTT 57.323 30.769 0.00 0.00 33.76 2.66
2759 8746 7.387948 GGACTCAGACACATTGTTGTAATACTT 59.612 37.037 0.00 0.00 33.76 2.24
2760 8747 6.874134 GGACTCAGACACATTGTTGTAATACT 59.126 38.462 0.00 0.00 33.76 2.12
2761 8748 6.649141 TGGACTCAGACACATTGTTGTAATAC 59.351 38.462 0.00 0.00 33.76 1.89
2762 8749 6.649141 GTGGACTCAGACACATTGTTGTAATA 59.351 38.462 0.00 0.00 37.54 0.98
2763 8750 5.470098 GTGGACTCAGACACATTGTTGTAAT 59.530 40.000 0.00 0.00 37.54 1.89
2764 8751 4.814234 GTGGACTCAGACACATTGTTGTAA 59.186 41.667 0.00 0.00 37.54 2.41
2765 8752 4.377021 GTGGACTCAGACACATTGTTGTA 58.623 43.478 0.00 0.00 37.54 2.41
2766 8753 3.206150 GTGGACTCAGACACATTGTTGT 58.794 45.455 0.00 0.00 37.54 3.32
2767 8754 2.549754 GGTGGACTCAGACACATTGTTG 59.450 50.000 6.60 0.00 39.31 3.33
2768 8755 2.172505 TGGTGGACTCAGACACATTGTT 59.827 45.455 6.60 0.00 39.31 2.83
2769 8756 1.768275 TGGTGGACTCAGACACATTGT 59.232 47.619 6.60 0.00 39.31 2.71
2770 8757 2.549064 TGGTGGACTCAGACACATTG 57.451 50.000 6.60 0.00 39.31 2.82
2771 8758 2.909006 AGATGGTGGACTCAGACACATT 59.091 45.455 6.60 0.00 39.31 2.71
2772 8759 2.544721 AGATGGTGGACTCAGACACAT 58.455 47.619 6.60 0.00 39.31 3.21
2773 8760 2.015456 AGATGGTGGACTCAGACACA 57.985 50.000 6.60 0.00 39.31 3.72
2774 8761 2.613977 CCAAGATGGTGGACTCAGACAC 60.614 54.545 0.00 0.00 41.65 3.67
2775 8762 1.625315 CCAAGATGGTGGACTCAGACA 59.375 52.381 0.00 0.00 41.65 3.41
2776 8763 1.677217 GCCAAGATGGTGGACTCAGAC 60.677 57.143 0.00 0.00 41.65 3.51
2777 8764 0.615331 GCCAAGATGGTGGACTCAGA 59.385 55.000 0.00 0.00 41.65 3.27
2778 8765 0.325933 TGCCAAGATGGTGGACTCAG 59.674 55.000 0.00 0.00 41.65 3.35
2779 8766 0.770499 TTGCCAAGATGGTGGACTCA 59.230 50.000 0.00 0.00 41.65 3.41
2780 8767 1.168714 GTTGCCAAGATGGTGGACTC 58.831 55.000 0.00 0.00 41.65 3.36
2781 8768 0.478072 TGTTGCCAAGATGGTGGACT 59.522 50.000 0.00 0.00 41.65 3.85
2782 8769 1.549203 ATGTTGCCAAGATGGTGGAC 58.451 50.000 0.00 0.00 41.65 4.02
2783 8770 3.289836 CATATGTTGCCAAGATGGTGGA 58.710 45.455 0.00 0.00 41.65 4.02
2784 8771 2.223876 GCATATGTTGCCAAGATGGTGG 60.224 50.000 4.29 0.00 46.15 4.61
2785 8772 3.088194 GCATATGTTGCCAAGATGGTG 57.912 47.619 4.29 0.00 46.15 4.17
2796 8783 4.080863 GGATAGGAGTAGGGGCATATGTTG 60.081 50.000 4.29 0.00 0.00 3.33
2797 8784 4.104831 GGATAGGAGTAGGGGCATATGTT 58.895 47.826 4.29 0.00 0.00 2.71
2798 8785 3.079072 TGGATAGGAGTAGGGGCATATGT 59.921 47.826 4.29 0.00 0.00 2.29
2799 8786 3.724478 TGGATAGGAGTAGGGGCATATG 58.276 50.000 0.00 0.00 0.00 1.78
2800 8787 4.435977 TTGGATAGGAGTAGGGGCATAT 57.564 45.455 0.00 0.00 0.00 1.78
2801 8788 3.935240 TTGGATAGGAGTAGGGGCATA 57.065 47.619 0.00 0.00 0.00 3.14
2802 8789 2.815357 TTGGATAGGAGTAGGGGCAT 57.185 50.000 0.00 0.00 0.00 4.40
2803 8790 2.579624 TTTGGATAGGAGTAGGGGCA 57.420 50.000 0.00 0.00 0.00 5.36
2804 8791 3.394606 TCATTTTGGATAGGAGTAGGGGC 59.605 47.826 0.00 0.00 0.00 5.80
2805 8792 5.310594 TCATCATTTTGGATAGGAGTAGGGG 59.689 44.000 0.00 0.00 0.00 4.79
2806 8793 6.439636 TCATCATTTTGGATAGGAGTAGGG 57.560 41.667 0.00 0.00 0.00 3.53
2807 8794 6.939163 CCTTCATCATTTTGGATAGGAGTAGG 59.061 42.308 0.00 0.00 0.00 3.18
2808 8795 6.939163 CCCTTCATCATTTTGGATAGGAGTAG 59.061 42.308 0.00 0.00 0.00 2.57
2809 8796 6.183361 CCCCTTCATCATTTTGGATAGGAGTA 60.183 42.308 0.00 0.00 0.00 2.59
2810 8797 5.399497 CCCCTTCATCATTTTGGATAGGAGT 60.399 44.000 0.00 0.00 0.00 3.85
2811 8798 5.075493 CCCCTTCATCATTTTGGATAGGAG 58.925 45.833 0.00 0.00 0.00 3.69
2812 8799 4.482025 ACCCCTTCATCATTTTGGATAGGA 59.518 41.667 0.00 0.00 0.00 2.94
2813 8800 4.586001 CACCCCTTCATCATTTTGGATAGG 59.414 45.833 0.00 0.00 0.00 2.57
2814 8801 4.038402 GCACCCCTTCATCATTTTGGATAG 59.962 45.833 0.00 0.00 0.00 2.08
2815 8802 3.960102 GCACCCCTTCATCATTTTGGATA 59.040 43.478 0.00 0.00 0.00 2.59
2816 8803 2.767960 GCACCCCTTCATCATTTTGGAT 59.232 45.455 0.00 0.00 0.00 3.41
2817 8804 2.178580 GCACCCCTTCATCATTTTGGA 58.821 47.619 0.00 0.00 0.00 3.53
2818 8805 2.181975 AGCACCCCTTCATCATTTTGG 58.818 47.619 0.00 0.00 0.00 3.28
2819 8806 3.181483 GCTAGCACCCCTTCATCATTTTG 60.181 47.826 10.63 0.00 0.00 2.44
2820 8807 3.026694 GCTAGCACCCCTTCATCATTTT 58.973 45.455 10.63 0.00 0.00 1.82
2821 8808 2.243221 AGCTAGCACCCCTTCATCATTT 59.757 45.455 18.83 0.00 0.00 2.32
2822 8809 1.849039 AGCTAGCACCCCTTCATCATT 59.151 47.619 18.83 0.00 0.00 2.57
2823 8810 1.142465 CAGCTAGCACCCCTTCATCAT 59.858 52.381 18.83 0.00 0.00 2.45
2824 8811 0.543277 CAGCTAGCACCCCTTCATCA 59.457 55.000 18.83 0.00 0.00 3.07
2825 8812 0.179034 CCAGCTAGCACCCCTTCATC 60.179 60.000 18.83 0.00 0.00 2.92
2826 8813 1.639635 CCCAGCTAGCACCCCTTCAT 61.640 60.000 18.83 0.00 0.00 2.57
2827 8814 2.300967 CCCAGCTAGCACCCCTTCA 61.301 63.158 18.83 0.00 0.00 3.02
2828 8815 2.592308 CCCAGCTAGCACCCCTTC 59.408 66.667 18.83 0.00 0.00 3.46
2829 8816 3.732849 GCCCAGCTAGCACCCCTT 61.733 66.667 18.83 0.00 0.00 3.95
2832 8819 4.803908 GTGGCCCAGCTAGCACCC 62.804 72.222 18.83 11.35 0.00 4.61
2833 8820 2.367202 TAGTGGCCCAGCTAGCACC 61.367 63.158 18.83 12.89 0.00 5.01
2834 8821 1.153349 GTAGTGGCCCAGCTAGCAC 60.153 63.158 18.83 4.90 0.00 4.40
2835 8822 2.367202 GGTAGTGGCCCAGCTAGCA 61.367 63.158 18.83 0.00 36.18 3.49
2836 8823 2.506472 GGTAGTGGCCCAGCTAGC 59.494 66.667 6.62 6.62 0.00 3.42
2844 8831 0.608308 GAGTGGTTTGGGTAGTGGCC 60.608 60.000 0.00 0.00 0.00 5.36
2845 8832 0.109723 TGAGTGGTTTGGGTAGTGGC 59.890 55.000 0.00 0.00 0.00 5.01
2846 8833 2.305927 AGATGAGTGGTTTGGGTAGTGG 59.694 50.000 0.00 0.00 0.00 4.00
2847 8834 3.703001 AGATGAGTGGTTTGGGTAGTG 57.297 47.619 0.00 0.00 0.00 2.74
2848 8835 4.323562 GCTTAGATGAGTGGTTTGGGTAGT 60.324 45.833 0.00 0.00 0.00 2.73
2849 8836 4.192317 GCTTAGATGAGTGGTTTGGGTAG 58.808 47.826 0.00 0.00 0.00 3.18
2850 8837 3.054655 GGCTTAGATGAGTGGTTTGGGTA 60.055 47.826 0.00 0.00 0.00 3.69
2851 8838 2.290960 GGCTTAGATGAGTGGTTTGGGT 60.291 50.000 0.00 0.00 0.00 4.51
2852 8839 2.025887 AGGCTTAGATGAGTGGTTTGGG 60.026 50.000 0.00 0.00 0.00 4.12
2853 8840 3.356529 AGGCTTAGATGAGTGGTTTGG 57.643 47.619 0.00 0.00 0.00 3.28
2854 8841 5.245531 TGTTAGGCTTAGATGAGTGGTTTG 58.754 41.667 0.00 0.00 0.00 2.93
2855 8842 5.499004 TGTTAGGCTTAGATGAGTGGTTT 57.501 39.130 0.00 0.00 0.00 3.27
2856 8843 5.189736 TGATGTTAGGCTTAGATGAGTGGTT 59.810 40.000 0.00 0.00 0.00 3.67
2857 8844 4.716784 TGATGTTAGGCTTAGATGAGTGGT 59.283 41.667 0.00 0.00 0.00 4.16
2858 8845 5.282055 TGATGTTAGGCTTAGATGAGTGG 57.718 43.478 0.00 0.00 0.00 4.00
2859 8846 7.615582 TTTTGATGTTAGGCTTAGATGAGTG 57.384 36.000 0.00 0.00 0.00 3.51
2860 8847 6.317391 GCTTTTGATGTTAGGCTTAGATGAGT 59.683 38.462 0.00 0.00 0.00 3.41
2861 8848 6.238593 GGCTTTTGATGTTAGGCTTAGATGAG 60.239 42.308 0.00 0.00 0.00 2.90
2862 8849 5.590259 GGCTTTTGATGTTAGGCTTAGATGA 59.410 40.000 0.00 0.00 0.00 2.92
2863 8850 5.504665 CGGCTTTTGATGTTAGGCTTAGATG 60.505 44.000 0.00 0.00 32.77 2.90
2864 8851 4.576463 CGGCTTTTGATGTTAGGCTTAGAT 59.424 41.667 0.00 0.00 32.77 1.98
2865 8852 3.938963 CGGCTTTTGATGTTAGGCTTAGA 59.061 43.478 0.00 0.00 32.77 2.10
2866 8853 3.065371 CCGGCTTTTGATGTTAGGCTTAG 59.935 47.826 0.00 0.00 32.77 2.18
2867 8854 3.013921 CCGGCTTTTGATGTTAGGCTTA 58.986 45.455 0.00 0.00 32.77 3.09
2868 8855 1.818674 CCGGCTTTTGATGTTAGGCTT 59.181 47.619 0.00 0.00 32.77 4.35
2869 8856 1.004277 TCCGGCTTTTGATGTTAGGCT 59.996 47.619 0.00 0.00 32.77 4.58
2870 8857 1.459450 TCCGGCTTTTGATGTTAGGC 58.541 50.000 0.00 0.00 0.00 3.93
2871 8858 2.159379 GCTTCCGGCTTTTGATGTTAGG 60.159 50.000 0.00 0.00 38.06 2.69
2872 8859 2.159379 GGCTTCCGGCTTTTGATGTTAG 60.159 50.000 0.00 0.00 41.46 2.34
2873 8860 1.816224 GGCTTCCGGCTTTTGATGTTA 59.184 47.619 0.00 0.00 41.46 2.41
2874 8861 0.603065 GGCTTCCGGCTTTTGATGTT 59.397 50.000 0.00 0.00 41.46 2.71
2875 8862 1.586154 CGGCTTCCGGCTTTTGATGT 61.586 55.000 0.00 0.00 44.15 3.06
2876 8863 1.137404 CGGCTTCCGGCTTTTGATG 59.863 57.895 0.00 0.00 44.15 3.07
2877 8864 3.590824 CGGCTTCCGGCTTTTGAT 58.409 55.556 0.00 0.00 44.15 2.57
2894 8881 1.095600 GGGGCTTCCGAATGAGTTTC 58.904 55.000 0.00 0.00 0.00 2.78
2895 8882 0.404040 TGGGGCTTCCGAATGAGTTT 59.596 50.000 0.00 0.00 38.76 2.66
2896 8883 0.035056 CTGGGGCTTCCGAATGAGTT 60.035 55.000 0.00 0.00 38.76 3.01
2897 8884 1.604378 CTGGGGCTTCCGAATGAGT 59.396 57.895 0.00 0.00 38.76 3.41
2898 8885 1.821332 GCTGGGGCTTCCGAATGAG 60.821 63.158 0.00 0.00 38.76 2.90
2899 8886 2.272146 GCTGGGGCTTCCGAATGA 59.728 61.111 0.00 0.00 38.76 2.57
2900 8887 2.830370 GGCTGGGGCTTCCGAATG 60.830 66.667 0.00 0.00 38.76 2.67
2901 8888 4.489771 CGGCTGGGGCTTCCGAAT 62.490 66.667 0.00 0.00 45.53 3.34
2910 8897 3.479203 TATGTGGCTCGGCTGGGG 61.479 66.667 0.00 0.00 0.00 4.96
2911 8898 2.203070 GTATGTGGCTCGGCTGGG 60.203 66.667 0.00 0.00 0.00 4.45
2912 8899 2.203070 GGTATGTGGCTCGGCTGG 60.203 66.667 0.00 0.00 0.00 4.85
2913 8900 2.586079 CGGTATGTGGCTCGGCTG 60.586 66.667 0.00 0.00 0.00 4.85
2914 8901 3.849951 CCGGTATGTGGCTCGGCT 61.850 66.667 0.00 0.00 35.95 5.52
2915 8902 4.910585 CCCGGTATGTGGCTCGGC 62.911 72.222 0.00 0.00 41.02 5.54
2916 8903 3.441011 GACCCGGTATGTGGCTCGG 62.441 68.421 0.00 0.00 41.90 4.63
2917 8904 2.106332 GACCCGGTATGTGGCTCG 59.894 66.667 0.00 0.00 0.00 5.03
2918 8905 1.144057 CAGACCCGGTATGTGGCTC 59.856 63.158 3.86 0.00 0.00 4.70
2919 8906 2.367202 CCAGACCCGGTATGTGGCT 61.367 63.158 11.23 0.00 0.00 4.75
2920 8907 2.189521 CCAGACCCGGTATGTGGC 59.810 66.667 11.23 0.00 0.00 5.01
2921 8908 2.742116 CCCCAGACCCGGTATGTGG 61.742 68.421 11.23 11.22 0.00 4.17
2922 8909 2.908015 CCCCAGACCCGGTATGTG 59.092 66.667 11.23 0.00 0.00 3.21
2923 8910 3.087906 GCCCCAGACCCGGTATGT 61.088 66.667 11.23 0.00 0.00 2.29
2924 8911 3.087253 TGCCCCAGACCCGGTATG 61.087 66.667 5.11 5.11 0.00 2.39
2925 8912 3.087906 GTGCCCCAGACCCGGTAT 61.088 66.667 0.00 0.00 0.00 2.73
2926 8913 4.642488 TGTGCCCCAGACCCGGTA 62.642 66.667 0.00 0.00 0.00 4.02
2928 8915 3.995506 GATTGTGCCCCAGACCCGG 62.996 68.421 0.00 0.00 0.00 5.73
2929 8916 2.438434 GATTGTGCCCCAGACCCG 60.438 66.667 0.00 0.00 0.00 5.28
2930 8917 2.043953 GGATTGTGCCCCAGACCC 60.044 66.667 0.00 0.00 0.00 4.46
2931 8918 2.270874 ATCGGATTGTGCCCCAGACC 62.271 60.000 0.00 0.00 0.00 3.85
2932 8919 0.815615 GATCGGATTGTGCCCCAGAC 60.816 60.000 0.00 0.00 0.00 3.51
2933 8920 1.271127 TGATCGGATTGTGCCCCAGA 61.271 55.000 0.00 0.00 0.00 3.86
2934 8921 0.816825 CTGATCGGATTGTGCCCCAG 60.817 60.000 0.00 0.00 0.00 4.45
2935 8922 1.224315 CTGATCGGATTGTGCCCCA 59.776 57.895 0.00 0.00 0.00 4.96
2936 8923 0.815615 GTCTGATCGGATTGTGCCCC 60.816 60.000 7.68 0.00 0.00 5.80
2937 8924 1.154205 CGTCTGATCGGATTGTGCCC 61.154 60.000 7.68 0.00 0.00 5.36
2938 8925 1.766143 GCGTCTGATCGGATTGTGCC 61.766 60.000 7.68 0.00 0.00 5.01
2939 8926 1.083806 TGCGTCTGATCGGATTGTGC 61.084 55.000 7.68 10.25 0.00 4.57
2940 8927 0.647410 GTGCGTCTGATCGGATTGTG 59.353 55.000 7.68 0.00 33.36 3.33
2941 8928 0.532573 AGTGCGTCTGATCGGATTGT 59.467 50.000 7.68 0.00 33.36 2.71
2942 8929 1.203928 GAGTGCGTCTGATCGGATTG 58.796 55.000 7.68 4.99 33.36 2.67
2943 8930 0.248661 CGAGTGCGTCTGATCGGATT 60.249 55.000 7.68 0.00 33.36 3.01
2944 8931 1.356979 CGAGTGCGTCTGATCGGAT 59.643 57.895 7.68 0.00 33.36 4.18
2945 8932 2.791927 CGAGTGCGTCTGATCGGA 59.208 61.111 0.00 0.00 0.00 4.55
2969 8956 3.195698 GTGGAAGATGGCGGCGAC 61.196 66.667 12.98 9.31 0.00 5.19
2970 8957 3.664025 CTGTGGAAGATGGCGGCGA 62.664 63.158 12.98 0.00 0.00 5.54
2971 8958 3.197790 CTGTGGAAGATGGCGGCG 61.198 66.667 0.51 0.51 0.00 6.46
2972 8959 2.825836 CCTGTGGAAGATGGCGGC 60.826 66.667 0.00 0.00 0.00 6.53
2973 8960 1.450312 GACCTGTGGAAGATGGCGG 60.450 63.158 0.00 0.00 0.00 6.13
2974 8961 0.036010 AAGACCTGTGGAAGATGGCG 60.036 55.000 0.00 0.00 0.00 5.69
2975 8962 2.206576 AAAGACCTGTGGAAGATGGC 57.793 50.000 0.00 0.00 0.00 4.40
2976 8963 4.826274 TCTAAAGACCTGTGGAAGATGG 57.174 45.455 0.00 0.00 0.00 3.51
2977 8964 5.982356 TGATCTAAAGACCTGTGGAAGATG 58.018 41.667 0.00 0.00 0.00 2.90
2978 8965 6.821616 ATGATCTAAAGACCTGTGGAAGAT 57.178 37.500 0.00 0.00 0.00 2.40
2979 8966 7.921041 ATATGATCTAAAGACCTGTGGAAGA 57.079 36.000 0.00 0.00 0.00 2.87
2980 8967 8.206867 TCAATATGATCTAAAGACCTGTGGAAG 58.793 37.037 0.00 0.00 0.00 3.46
2981 8968 8.089625 TCAATATGATCTAAAGACCTGTGGAA 57.910 34.615 0.00 0.00 0.00 3.53
2982 8969 7.202038 CCTCAATATGATCTAAAGACCTGTGGA 60.202 40.741 0.00 0.00 0.00 4.02
2983 8970 6.933521 CCTCAATATGATCTAAAGACCTGTGG 59.066 42.308 0.00 0.00 0.00 4.17
2984 8971 6.426328 GCCTCAATATGATCTAAAGACCTGTG 59.574 42.308 0.00 0.00 0.00 3.66
2985 8972 6.328672 AGCCTCAATATGATCTAAAGACCTGT 59.671 38.462 0.00 0.00 0.00 4.00
2986 8973 6.767456 AGCCTCAATATGATCTAAAGACCTG 58.233 40.000 0.00 0.00 0.00 4.00
2987 8974 7.292120 AGAAGCCTCAATATGATCTAAAGACCT 59.708 37.037 0.00 0.00 0.00 3.85
2988 8975 7.449247 AGAAGCCTCAATATGATCTAAAGACC 58.551 38.462 0.00 0.00 0.00 3.85
2989 8976 9.418045 GTAGAAGCCTCAATATGATCTAAAGAC 57.582 37.037 0.00 0.00 0.00 3.01
2990 8977 8.589338 GGTAGAAGCCTCAATATGATCTAAAGA 58.411 37.037 0.00 0.00 0.00 2.52
2991 8978 8.592809 AGGTAGAAGCCTCAATATGATCTAAAG 58.407 37.037 0.00 0.00 32.39 1.85
2992 8979 8.497910 AGGTAGAAGCCTCAATATGATCTAAA 57.502 34.615 0.00 0.00 32.39 1.85
2993 8980 8.370940 CAAGGTAGAAGCCTCAATATGATCTAA 58.629 37.037 0.00 0.00 38.03 2.10
2994 8981 7.510685 ACAAGGTAGAAGCCTCAATATGATCTA 59.489 37.037 0.00 0.00 38.03 1.98
2995 8982 6.328672 ACAAGGTAGAAGCCTCAATATGATCT 59.671 38.462 0.00 0.00 38.03 2.75
2996 8983 6.529220 ACAAGGTAGAAGCCTCAATATGATC 58.471 40.000 0.00 0.00 38.03 2.92
2997 8984 6.328672 AGACAAGGTAGAAGCCTCAATATGAT 59.671 38.462 0.00 0.00 38.03 2.45
2998 8985 5.663106 AGACAAGGTAGAAGCCTCAATATGA 59.337 40.000 0.00 0.00 38.03 2.15
2999 8986 5.757320 CAGACAAGGTAGAAGCCTCAATATG 59.243 44.000 0.00 0.00 38.03 1.78
3000 8987 5.163258 CCAGACAAGGTAGAAGCCTCAATAT 60.163 44.000 0.00 0.00 38.03 1.28
3001 8988 4.162320 CCAGACAAGGTAGAAGCCTCAATA 59.838 45.833 0.00 0.00 38.03 1.90
3002 8989 3.054802 CCAGACAAGGTAGAAGCCTCAAT 60.055 47.826 0.00 0.00 38.03 2.57
3003 8990 2.303022 CCAGACAAGGTAGAAGCCTCAA 59.697 50.000 0.00 0.00 38.03 3.02
3004 8991 1.902508 CCAGACAAGGTAGAAGCCTCA 59.097 52.381 0.00 0.00 38.03 3.86
3005 8992 1.406205 GCCAGACAAGGTAGAAGCCTC 60.406 57.143 0.00 0.00 38.03 4.70
3006 8993 0.615850 GCCAGACAAGGTAGAAGCCT 59.384 55.000 0.00 0.00 41.41 4.58
3007 8994 0.393132 GGCCAGACAAGGTAGAAGCC 60.393 60.000 0.00 0.00 0.00 4.35
3008 8995 0.324943 TGGCCAGACAAGGTAGAAGC 59.675 55.000 0.00 0.00 0.00 3.86
3009 8996 1.625818 AGTGGCCAGACAAGGTAGAAG 59.374 52.381 5.11 0.00 0.00 2.85
3010 8997 1.623811 GAGTGGCCAGACAAGGTAGAA 59.376 52.381 5.11 0.00 0.00 2.10
3011 8998 1.267121 GAGTGGCCAGACAAGGTAGA 58.733 55.000 5.11 0.00 0.00 2.59
3012 8999 0.976641 TGAGTGGCCAGACAAGGTAG 59.023 55.000 5.11 0.00 0.00 3.18
3013 9000 0.976641 CTGAGTGGCCAGACAAGGTA 59.023 55.000 5.11 0.00 36.29 3.08
3014 9001 1.757306 CTGAGTGGCCAGACAAGGT 59.243 57.895 5.11 0.00 36.29 3.50
3015 9002 1.673665 GCTGAGTGGCCAGACAAGG 60.674 63.158 5.11 0.00 36.29 3.61
3016 9003 3.978272 GCTGAGTGGCCAGACAAG 58.022 61.111 5.11 2.54 36.29 3.16
3024 9011 2.887568 CGTCGATGGCTGAGTGGC 60.888 66.667 0.00 0.00 42.18 5.01
3025 9012 1.517257 GACGTCGATGGCTGAGTGG 60.517 63.158 9.90 0.00 0.00 4.00
3026 9013 1.073216 GTGACGTCGATGGCTGAGTG 61.073 60.000 12.67 0.00 0.00 3.51
3027 9014 1.213013 GTGACGTCGATGGCTGAGT 59.787 57.895 12.67 0.00 0.00 3.41
3028 9015 1.517257 GGTGACGTCGATGGCTGAG 60.517 63.158 12.67 0.00 0.00 3.35
3029 9016 1.604147 ATGGTGACGTCGATGGCTGA 61.604 55.000 12.67 0.00 0.00 4.26
3030 9017 1.153568 ATGGTGACGTCGATGGCTG 60.154 57.895 12.67 0.00 0.00 4.85
3031 9018 1.153568 CATGGTGACGTCGATGGCT 60.154 57.895 12.67 0.00 0.00 4.75
3032 9019 1.153647 TCATGGTGACGTCGATGGC 60.154 57.895 11.62 6.55 0.00 4.40
3033 9020 2.665777 GTCATGGTGACGTCGATGG 58.334 57.895 11.62 0.00 37.67 3.51
3041 9028 1.005037 TGTCTGGCGTCATGGTGAC 60.005 57.895 0.00 0.00 43.65 3.67
3042 9029 1.293179 CTGTCTGGCGTCATGGTGA 59.707 57.895 0.00 0.00 0.00 4.02
3043 9030 2.393768 GCTGTCTGGCGTCATGGTG 61.394 63.158 0.00 0.00 0.00 4.17
3044 9031 2.046892 GCTGTCTGGCGTCATGGT 60.047 61.111 0.00 0.00 0.00 3.55
3045 9032 1.672030 TTGCTGTCTGGCGTCATGG 60.672 57.895 0.00 0.00 34.52 3.66
3046 9033 1.499056 GTTGCTGTCTGGCGTCATG 59.501 57.895 0.00 0.00 34.52 3.07
3047 9034 1.672356 GGTTGCTGTCTGGCGTCAT 60.672 57.895 0.00 0.00 34.52 3.06
3048 9035 2.280797 GGTTGCTGTCTGGCGTCA 60.281 61.111 0.00 0.00 34.52 4.35
3049 9036 2.029844 GAGGTTGCTGTCTGGCGTC 61.030 63.158 0.00 0.00 34.52 5.19
3050 9037 2.031163 GAGGTTGCTGTCTGGCGT 59.969 61.111 0.00 0.00 34.52 5.68
3051 9038 2.743928 GGAGGTTGCTGTCTGGCG 60.744 66.667 0.00 0.00 34.52 5.69
3052 9039 1.376553 GAGGAGGTTGCTGTCTGGC 60.377 63.158 0.00 0.00 0.00 4.85
3053 9040 1.197430 AGGAGGAGGTTGCTGTCTGG 61.197 60.000 0.00 0.00 0.00 3.86
3054 9041 0.036577 CAGGAGGAGGTTGCTGTCTG 60.037 60.000 0.00 0.00 32.51 3.51
3055 9042 1.835927 GCAGGAGGAGGTTGCTGTCT 61.836 60.000 0.00 0.00 38.61 3.41
3056 9043 1.376553 GCAGGAGGAGGTTGCTGTC 60.377 63.158 0.00 0.00 38.61 3.51
3057 9044 2.753029 GCAGGAGGAGGTTGCTGT 59.247 61.111 0.00 0.00 38.61 4.40
3058 9045 2.435586 CGCAGGAGGAGGTTGCTG 60.436 66.667 0.00 0.00 39.28 4.41
3059 9046 4.400961 GCGCAGGAGGAGGTTGCT 62.401 66.667 0.30 0.00 35.73 3.91
3061 9048 3.997064 CTCGCGCAGGAGGAGGTTG 62.997 68.421 8.75 0.00 0.00 3.77
3062 9049 3.764466 CTCGCGCAGGAGGAGGTT 61.764 66.667 8.75 0.00 0.00 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.