Multiple sequence alignment - TraesCS2B01G324600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G324600 chr2B 100.000 7039 0 0 1 7039 464019570 464026608 0.000000e+00 12999.0
1 TraesCS2B01G324600 chr2B 94.786 4526 166 40 1925 6421 463856303 463860787 0.000000e+00 6986.0
2 TraesCS2B01G324600 chr2B 92.424 2323 123 27 4167 6468 463769015 463771305 0.000000e+00 3265.0
3 TraesCS2B01G324600 chr2B 93.097 2231 128 10 1949 4165 463766744 463768962 0.000000e+00 3243.0
4 TraesCS2B01G324600 chr2B 88.521 1028 61 25 751 1744 463855298 463856302 0.000000e+00 1192.0
5 TraesCS2B01G324600 chr2B 83.142 1044 96 42 732 1730 463765693 463766701 0.000000e+00 880.0
6 TraesCS2B01G324600 chr2B 78.371 356 58 12 297 648 463850369 463850709 5.530000e-51 213.0
7 TraesCS2B01G324600 chr2B 98.198 111 2 0 1736 1846 146718009 146718119 2.000000e-45 195.0
8 TraesCS2B01G324600 chr2B 88.732 71 5 1 1862 1932 375659551 375659484 4.520000e-12 84.2
9 TraesCS2B01G324600 chr2B 90.625 64 3 1 1862 1925 32057948 32058008 1.630000e-11 82.4
10 TraesCS2B01G324600 chr2D 94.582 4614 168 34 1949 6531 392052677 392057239 0.000000e+00 7060.0
11 TraesCS2B01G324600 chr2D 92.918 2231 132 10 1949 4165 391850947 391853165 0.000000e+00 3221.0
12 TraesCS2B01G324600 chr2D 92.978 2193 112 15 4167 6344 391853218 391855383 0.000000e+00 3158.0
13 TraesCS2B01G324600 chr2D 83.253 1033 104 31 730 1721 391849891 391850895 0.000000e+00 885.0
14 TraesCS2B01G324600 chr2D 93.675 585 18 3 731 1302 392051764 392052342 0.000000e+00 857.0
15 TraesCS2B01G324600 chr2D 79.082 392 57 19 267 648 563947467 563947091 5.450000e-61 246.0
16 TraesCS2B01G324600 chr2D 90.909 132 11 1 1608 1739 392052530 392052660 7.260000e-40 176.0
17 TraesCS2B01G324600 chr2D 79.412 238 36 10 294 529 558729392 558729618 9.450000e-34 156.0
18 TraesCS2B01G324600 chr2D 91.667 60 2 1 1866 1925 44064414 44064470 5.850000e-11 80.5
19 TraesCS2B01G324600 chr2D 89.831 59 3 1 1867 1925 460870851 460870796 9.790000e-09 73.1
20 TraesCS2B01G324600 chr2A 93.769 4574 211 37 1924 6462 529792661 529797195 0.000000e+00 6800.0
21 TraesCS2B01G324600 chr2A 93.662 4323 170 42 1968 6245 529692427 529696690 0.000000e+00 6370.0
22 TraesCS2B01G324600 chr2A 93.011 2232 129 11 1949 4165 528906353 528908572 0.000000e+00 3232.0
23 TraesCS2B01G324600 chr2A 94.104 2086 109 7 4167 6238 528908625 528910710 0.000000e+00 3158.0
24 TraesCS2B01G324600 chr2A 92.794 680 22 7 650 1315 529791432 529792098 0.000000e+00 959.0
25 TraesCS2B01G324600 chr2A 89.467 788 36 19 731 1493 529691356 529692121 0.000000e+00 952.0
26 TraesCS2B01G324600 chr2A 94.148 581 27 2 6457 7037 529797296 529797869 0.000000e+00 878.0
27 TraesCS2B01G324600 chr2A 90.205 684 35 10 1 659 529790722 529791398 0.000000e+00 863.0
28 TraesCS2B01G324600 chr2A 81.541 1051 101 52 732 1721 528905283 528906301 0.000000e+00 780.0
29 TraesCS2B01G324600 chr2A 86.472 377 27 11 1373 1737 529792298 529792662 6.620000e-105 392.0
30 TraesCS2B01G324600 chr2A 96.522 115 3 1 1733 1846 238014514 238014628 9.320000e-44 189.0
31 TraesCS2B01G324600 chr2A 87.417 151 11 3 6277 6421 529696687 529696835 4.370000e-37 167.0
32 TraesCS2B01G324600 chr2A 84.314 153 13 5 6316 6468 528910737 528910878 9.520000e-29 139.0
33 TraesCS2B01G324600 chr5D 75.690 580 80 37 2 540 534873633 534873074 4.250000e-57 233.0
34 TraesCS2B01G324600 chr5D 91.935 62 4 1 268 328 444279728 444279667 1.260000e-12 86.1
35 TraesCS2B01G324600 chr6B 98.305 118 2 0 1729 1846 460906311 460906194 2.570000e-49 207.0
36 TraesCS2B01G324600 chr6B 73.423 523 107 22 4302 4820 227096126 227096620 4.370000e-37 167.0
37 TraesCS2B01G324600 chr6B 88.889 81 6 3 466 545 17804676 17804598 5.810000e-16 97.1
38 TraesCS2B01G324600 chr6B 74.569 232 38 15 197 409 571742173 571742402 1.630000e-11 82.4
39 TraesCS2B01G324600 chr6B 91.525 59 2 1 1867 1925 27118294 27118349 2.110000e-10 78.7
40 TraesCS2B01G324600 chr6A 100.000 111 0 0 1739 1849 596198643 596198533 9.260000e-49 206.0
41 TraesCS2B01G324600 chr6A 96.552 116 3 1 1732 1847 116959611 116959497 2.590000e-44 191.0
42 TraesCS2B01G324600 chr4B 100.000 111 0 0 1739 1849 621917 621807 9.260000e-49 206.0
43 TraesCS2B01G324600 chr4A 74.611 579 93 26 2 545 636666456 636667015 9.260000e-49 206.0
44 TraesCS2B01G324600 chr3B 99.091 110 1 0 1739 1848 373883286 373883177 1.550000e-46 198.0
45 TraesCS2B01G324600 chr3A 99.074 108 1 0 1739 1846 90877949 90878056 2.000000e-45 195.0
46 TraesCS2B01G324600 chr7A 96.491 114 4 0 1733 1846 150203344 150203457 9.320000e-44 189.0
47 TraesCS2B01G324600 chr7A 80.220 182 18 15 480 648 39068394 39068218 3.450000e-23 121.0
48 TraesCS2B01G324600 chr7A 87.931 58 5 1 269 326 464273050 464273105 4.560000e-07 67.6
49 TraesCS2B01G324600 chr7D 76.276 392 56 20 263 629 49805957 49806336 2.610000e-39 174.0
50 TraesCS2B01G324600 chr6D 72.989 522 112 19 4302 4820 128257908 128258403 9.450000e-34 156.0
51 TraesCS2B01G324600 chr6D 80.000 165 27 6 288 447 114169523 114169686 4.460000e-22 117.0
52 TraesCS2B01G324600 chr6D 92.308 65 2 1 1862 1926 105560488 105560549 9.730000e-14 89.8
53 TraesCS2B01G324600 chr7B 79.592 196 32 8 268 455 524713894 524714089 4.430000e-27 134.0
54 TraesCS2B01G324600 chr7B 89.062 64 4 2 1862 1925 505750300 505750360 7.570000e-10 76.8
55 TraesCS2B01G324600 chr5A 76.374 182 33 8 282 455 275970261 275970082 9.730000e-14 89.8
56 TraesCS2B01G324600 chr5A 90.909 66 3 1 1862 1927 676585422 676585484 1.260000e-12 86.1
57 TraesCS2B01G324600 chr5A 96.970 33 1 0 2596 2628 444923498 444923530 1.000000e-03 56.5
58 TraesCS2B01G324600 chr5B 86.667 75 10 0 2290 2364 62958504 62958578 4.520000e-12 84.2
59 TraesCS2B01G324600 chr4D 91.667 60 2 1 1866 1925 502406345 502406289 5.850000e-11 80.5
60 TraesCS2B01G324600 chr3D 93.617 47 3 0 213 259 11374929 11374883 3.520000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G324600 chr2B 464019570 464026608 7038 False 12999.000000 12999 100.000000 1 7039 1 chr2B.!!$F4 7038
1 TraesCS2B01G324600 chr2B 463855298 463860787 5489 False 4089.000000 6986 91.653500 751 6421 2 chr2B.!!$F6 5670
2 TraesCS2B01G324600 chr2B 463765693 463771305 5612 False 2462.666667 3265 89.554333 732 6468 3 chr2B.!!$F5 5736
3 TraesCS2B01G324600 chr2D 392051764 392057239 5475 False 2697.666667 7060 93.055333 731 6531 3 chr2D.!!$F4 5800
4 TraesCS2B01G324600 chr2D 391849891 391855383 5492 False 2421.333333 3221 89.716333 730 6344 3 chr2D.!!$F3 5614
5 TraesCS2B01G324600 chr2A 529691356 529696835 5479 False 2496.333333 6370 90.182000 731 6421 3 chr2A.!!$F3 5690
6 TraesCS2B01G324600 chr2A 529790722 529797869 7147 False 1978.400000 6800 91.477600 1 7037 5 chr2A.!!$F4 7036
7 TraesCS2B01G324600 chr2A 528905283 528910878 5595 False 1827.250000 3232 88.242500 732 6468 4 chr2A.!!$F2 5736
8 TraesCS2B01G324600 chr5D 534873074 534873633 559 True 233.000000 233 75.690000 2 540 1 chr5D.!!$R2 538
9 TraesCS2B01G324600 chr4A 636666456 636667015 559 False 206.000000 206 74.611000 2 545 1 chr4A.!!$F1 543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
725 792 0.036765 AGATGCCTTAACGCCGTGAA 60.037 50.000 0.00 0.0 0.00 3.18 F
726 793 0.800012 GATGCCTTAACGCCGTGAAA 59.200 50.000 0.00 0.0 0.00 2.69 F
728 795 1.022735 TGCCTTAACGCCGTGAAAAA 58.977 45.000 0.00 0.0 0.00 1.94 F
1554 2019 1.202651 GGCGGTAGGTAGGTAGTCGTA 60.203 57.143 0.00 0.0 0.00 3.43 F
1798 2268 0.316204 AGACAACATGCAAAGCAGCC 59.684 50.000 0.00 0.0 43.65 4.85 F
1799 2269 0.316204 GACAACATGCAAAGCAGCCT 59.684 50.000 0.00 0.0 43.65 4.58 F
2802 3370 1.089920 CCATGACTGTAAGCAGCCAC 58.910 55.000 0.00 0.0 46.30 5.01 F
3394 3966 1.165907 TCTGCTGAAACGCCTTGTGG 61.166 55.000 0.00 0.0 0.00 4.17 F
4193 4822 1.395954 CAGCACATCACCAGTGAATCG 59.604 52.381 4.31 0.0 43.58 3.34 F
5683 6366 0.179000 AAGCTGCTGGATAACTCCCG 59.821 55.000 1.35 0.0 41.29 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1533 1998 0.179034 CGACTACCTACCTACCGCCT 60.179 60.000 0.00 0.00 0.00 5.52 R
1779 2249 0.316204 GGCTGCTTTGCATGTTGTCT 59.684 50.000 0.00 0.00 38.13 3.41 R
1781 2251 1.619654 TAGGCTGCTTTGCATGTTGT 58.380 45.000 0.00 0.00 38.13 3.32 R
2934 3503 0.693049 TCTTCCTCTTGGCCTGTTCC 59.307 55.000 3.32 0.00 0.00 3.62 R
2998 3567 3.303857 GCATGCTTGATGTAGTCAGCATC 60.304 47.826 11.37 0.00 43.48 3.91 R
3738 4316 3.651803 TTGTCAAAATTAACCAGCCGG 57.348 42.857 0.00 0.00 38.77 6.13 R
3981 4559 0.837691 TCCCTGCATCACCACTCAGT 60.838 55.000 0.00 0.00 0.00 3.41 R
5086 5733 2.092538 CAGATGTTCCCTCCATTCTGCT 60.093 50.000 0.00 0.00 0.00 4.24 R
5796 6479 1.003355 CCGCTTGGAGGCTCTTGAA 60.003 57.895 15.23 4.39 33.02 2.69 R
6623 7469 0.097674 CTCGGAAATGCGGCAGAAAG 59.902 55.000 9.25 0.00 0.00 2.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 1.202758 AGGCACGTGATGAACTTTCCA 60.203 47.619 22.23 0.00 0.00 3.53
115 116 1.139058 GGTGGATGTGGAGCTAATCGT 59.861 52.381 0.00 0.00 0.00 3.73
118 119 3.028130 TGGATGTGGAGCTAATCGTGTA 58.972 45.455 0.00 0.00 0.00 2.90
171 172 5.733676 AGAATGAGGAGAAGAAGAAGAAGC 58.266 41.667 0.00 0.00 0.00 3.86
173 174 3.515562 TGAGGAGAAGAAGAAGAAGCCT 58.484 45.455 0.00 0.00 0.00 4.58
174 175 4.678256 TGAGGAGAAGAAGAAGAAGCCTA 58.322 43.478 0.00 0.00 0.00 3.93
175 176 5.276440 TGAGGAGAAGAAGAAGAAGCCTAT 58.724 41.667 0.00 0.00 0.00 2.57
182 183 7.500141 AGAAGAAGAAGAAGCCTATGATTCTC 58.500 38.462 0.00 0.00 46.09 2.87
192 193 2.103094 CCTATGATTCTCGTTGCTCCCA 59.897 50.000 0.00 0.00 0.00 4.37
218 219 2.579787 GACGACGTGGAGATGGCG 60.580 66.667 4.58 0.00 45.92 5.69
227 228 1.377202 GGAGATGGCGAGGTTTGCA 60.377 57.895 0.00 0.00 0.00 4.08
252 253 1.414181 AGCATCCGAAGTATGTCCAGG 59.586 52.381 0.00 0.00 0.00 4.45
254 255 1.138859 CATCCGAAGTATGTCCAGGCA 59.861 52.381 0.00 0.00 0.00 4.75
334 360 0.679505 TCCCCGTTGAGTCTGACTTG 59.320 55.000 12.27 2.92 0.00 3.16
340 366 0.679505 TTGAGTCTGACTTGTCGGGG 59.320 55.000 12.27 0.00 0.00 5.73
351 377 1.831736 CTTGTCGGGGTAGGATGACTT 59.168 52.381 0.00 0.00 32.64 3.01
361 387 2.173126 AGGATGACTTGGAGGAGGAG 57.827 55.000 0.00 0.00 0.00 3.69
364 390 1.760029 GATGACTTGGAGGAGGAGGAC 59.240 57.143 0.00 0.00 0.00 3.85
367 393 0.612453 ACTTGGAGGAGGAGGACGAC 60.612 60.000 0.00 0.00 0.00 4.34
368 394 1.658686 CTTGGAGGAGGAGGACGACG 61.659 65.000 0.00 0.00 0.00 5.12
369 395 2.133359 TTGGAGGAGGAGGACGACGA 62.133 60.000 0.00 0.00 0.00 4.20
370 396 1.378250 GGAGGAGGAGGACGACGAA 60.378 63.158 0.00 0.00 0.00 3.85
371 397 0.752376 GGAGGAGGAGGACGACGAAT 60.752 60.000 0.00 0.00 0.00 3.34
372 398 0.382515 GAGGAGGAGGACGACGAATG 59.617 60.000 0.00 0.00 0.00 2.67
373 399 1.227002 GGAGGAGGACGACGAATGC 60.227 63.158 0.00 0.00 0.00 3.56
376 402 1.065928 GGAGGACGACGAATGCGAT 59.934 57.895 0.00 0.00 41.64 4.58
381 407 0.525668 GACGACGAATGCGATGACCT 60.526 55.000 0.00 0.00 41.64 3.85
383 409 1.268589 ACGACGAATGCGATGACCTAG 60.269 52.381 0.00 0.00 41.64 3.02
412 438 6.183360 GGACGATATCTAGGAGCAGTTCTATG 60.183 46.154 0.34 0.00 0.00 2.23
462 488 3.159472 TGTAGTTGAAGTAGGCTCGGAA 58.841 45.455 0.00 0.00 0.00 4.30
593 619 4.997395 TCATTTGTTGGAGCACTAGTCTTC 59.003 41.667 0.00 0.00 0.00 2.87
725 792 0.036765 AGATGCCTTAACGCCGTGAA 60.037 50.000 0.00 0.00 0.00 3.18
726 793 0.800012 GATGCCTTAACGCCGTGAAA 59.200 50.000 0.00 0.00 0.00 2.69
727 794 1.198178 GATGCCTTAACGCCGTGAAAA 59.802 47.619 0.00 0.00 0.00 2.29
728 795 1.022735 TGCCTTAACGCCGTGAAAAA 58.977 45.000 0.00 0.00 0.00 1.94
752 819 1.456296 AAATAACCGAAACGCCCTCC 58.544 50.000 0.00 0.00 0.00 4.30
984 1114 4.467107 AGGGAGACGGAGGGGAGC 62.467 72.222 0.00 0.00 0.00 4.70
1229 1361 5.975693 ACATTTATCTTTCGCTTTTCCCA 57.024 34.783 0.00 0.00 0.00 4.37
1230 1362 6.339587 ACATTTATCTTTCGCTTTTCCCAA 57.660 33.333 0.00 0.00 0.00 4.12
1306 1442 2.034685 GTGTTGAGGACTGCTTTTTCCC 59.965 50.000 0.00 0.00 31.51 3.97
1315 1462 1.478105 CTGCTTTTTCCCCTATGCACC 59.522 52.381 0.00 0.00 0.00 5.01
1321 1468 3.857157 TTTCCCCTATGCACCACTATC 57.143 47.619 0.00 0.00 0.00 2.08
1343 1490 2.050714 TCGTGTTGTCTCGTCGGC 60.051 61.111 0.00 0.00 33.21 5.54
1367 1523 2.571653 CTCCCATCCTTACTGGTGAACA 59.428 50.000 0.00 0.00 37.07 3.18
1380 1778 2.000447 GGTGAACAGATAGTTGCGTCC 59.000 52.381 0.00 0.00 41.51 4.79
1502 1959 2.649531 ATTGTGAAAGTTCGTGGGGA 57.350 45.000 0.00 0.00 0.00 4.81
1506 1963 1.602377 GTGAAAGTTCGTGGGGAAGTG 59.398 52.381 0.00 0.00 38.32 3.16
1529 1994 7.290014 AGTGGAAGTAACATTCTTTGGGAATTT 59.710 33.333 0.00 0.00 42.20 1.82
1531 1996 7.930865 TGGAAGTAACATTCTTTGGGAATTTTG 59.069 33.333 0.00 0.00 42.20 2.44
1533 1998 9.974980 GAAGTAACATTCTTTGGGAATTTTGTA 57.025 29.630 0.00 0.00 42.20 2.41
1554 2019 1.202651 GGCGGTAGGTAGGTAGTCGTA 60.203 57.143 0.00 0.00 0.00 3.43
1556 2021 2.943033 GCGGTAGGTAGGTAGTCGTAAA 59.057 50.000 0.00 0.00 0.00 2.01
1565 2030 6.942576 AGGTAGGTAGTCGTAAACTGAAGTTA 59.057 38.462 0.00 0.00 39.11 2.24
1606 2071 6.200665 CGAATTGCTTTTCTGTTGGATTTTGA 59.799 34.615 0.00 0.00 0.00 2.69
1678 2148 3.708451 AGCGTTTTCCCCCTATTGAAAT 58.292 40.909 0.00 0.00 31.10 2.17
1700 2170 8.950208 AAATAGGTCTCAAGTTTATCTGTAGC 57.050 34.615 0.00 0.00 0.00 3.58
1741 2211 9.490083 AACAGGGACAATTAGAGTATTACTACT 57.510 33.333 0.00 0.00 40.98 2.57
1753 2223 7.030075 GAGTATTACTACTCCCTCTGTTCAC 57.970 44.000 8.68 0.00 45.51 3.18
1754 2224 6.733509 AGTATTACTACTCCCTCTGTTCACT 58.266 40.000 0.00 0.00 32.56 3.41
1755 2225 7.183460 AGTATTACTACTCCCTCTGTTCACTT 58.817 38.462 0.00 0.00 32.56 3.16
1756 2226 6.936968 ATTACTACTCCCTCTGTTCACTTT 57.063 37.500 0.00 0.00 0.00 2.66
1757 2227 6.742559 TTACTACTCCCTCTGTTCACTTTT 57.257 37.500 0.00 0.00 0.00 2.27
1758 2228 7.844493 TTACTACTCCCTCTGTTCACTTTTA 57.156 36.000 0.00 0.00 0.00 1.52
1759 2229 6.936968 ACTACTCCCTCTGTTCACTTTTAT 57.063 37.500 0.00 0.00 0.00 1.40
1760 2230 9.537852 TTACTACTCCCTCTGTTCACTTTTATA 57.462 33.333 0.00 0.00 0.00 0.98
1761 2231 8.431910 ACTACTCCCTCTGTTCACTTTTATAA 57.568 34.615 0.00 0.00 0.00 0.98
1762 2232 8.532819 ACTACTCCCTCTGTTCACTTTTATAAG 58.467 37.037 0.00 0.00 37.40 1.73
1763 2233 7.317722 ACTCCCTCTGTTCACTTTTATAAGT 57.682 36.000 0.00 0.00 45.40 2.24
1764 2234 7.387643 ACTCCCTCTGTTCACTTTTATAAGTC 58.612 38.462 0.00 0.00 42.67 3.01
1765 2235 6.708285 TCCCTCTGTTCACTTTTATAAGTCC 58.292 40.000 0.00 0.00 42.67 3.85
1766 2236 6.500751 TCCCTCTGTTCACTTTTATAAGTCCT 59.499 38.462 0.00 0.00 42.67 3.85
1767 2237 7.017254 TCCCTCTGTTCACTTTTATAAGTCCTT 59.983 37.037 0.00 0.00 42.67 3.36
1768 2238 7.119846 CCCTCTGTTCACTTTTATAAGTCCTTG 59.880 40.741 0.00 0.00 42.67 3.61
1769 2239 7.878127 CCTCTGTTCACTTTTATAAGTCCTTGA 59.122 37.037 0.00 0.00 42.67 3.02
1770 2240 9.273016 CTCTGTTCACTTTTATAAGTCCTTGAA 57.727 33.333 0.00 0.00 42.67 2.69
1771 2241 9.273016 TCTGTTCACTTTTATAAGTCCTTGAAG 57.727 33.333 0.00 0.00 42.67 3.02
1772 2242 9.273016 CTGTTCACTTTTATAAGTCCTTGAAGA 57.727 33.333 0.00 0.00 42.67 2.87
1773 2243 9.052759 TGTTCACTTTTATAAGTCCTTGAAGAC 57.947 33.333 0.00 0.00 42.67 3.01
1774 2244 9.052759 GTTCACTTTTATAAGTCCTTGAAGACA 57.947 33.333 0.00 0.00 42.67 3.41
1775 2245 9.793259 TTCACTTTTATAAGTCCTTGAAGACAT 57.207 29.630 0.00 0.00 42.67 3.06
1776 2246 9.793259 TCACTTTTATAAGTCCTTGAAGACATT 57.207 29.630 0.00 0.00 42.67 2.71
1782 2252 7.913674 ATAAGTCCTTGAAGACATTTCAGAC 57.086 36.000 0.00 2.75 39.34 3.51
1783 2253 5.296151 AGTCCTTGAAGACATTTCAGACA 57.704 39.130 0.00 0.00 39.34 3.41
1784 2254 5.684704 AGTCCTTGAAGACATTTCAGACAA 58.315 37.500 0.00 0.00 39.34 3.18
1785 2255 5.529060 AGTCCTTGAAGACATTTCAGACAAC 59.471 40.000 0.00 1.46 39.34 3.32
1786 2256 5.296780 GTCCTTGAAGACATTTCAGACAACA 59.703 40.000 0.00 0.00 36.73 3.33
1787 2257 6.016777 GTCCTTGAAGACATTTCAGACAACAT 60.017 38.462 0.00 0.00 36.73 2.71
1788 2258 6.016860 TCCTTGAAGACATTTCAGACAACATG 60.017 38.462 0.00 0.00 0.00 3.21
1789 2259 5.112220 TGAAGACATTTCAGACAACATGC 57.888 39.130 0.00 0.00 0.00 4.06
1790 2260 4.579753 TGAAGACATTTCAGACAACATGCA 59.420 37.500 0.00 0.00 0.00 3.96
1791 2261 5.067544 TGAAGACATTTCAGACAACATGCAA 59.932 36.000 0.00 0.00 0.00 4.08
1792 2262 5.518848 AGACATTTCAGACAACATGCAAA 57.481 34.783 0.00 0.00 0.00 3.68
1793 2263 5.526115 AGACATTTCAGACAACATGCAAAG 58.474 37.500 0.00 0.00 0.00 2.77
1794 2264 4.053295 ACATTTCAGACAACATGCAAAGC 58.947 39.130 0.00 0.00 0.00 3.51
1795 2265 3.797451 TTTCAGACAACATGCAAAGCA 57.203 38.095 0.00 0.00 44.86 3.91
1796 2266 3.358707 TTCAGACAACATGCAAAGCAG 57.641 42.857 0.00 0.00 43.65 4.24
1797 2267 1.001048 TCAGACAACATGCAAAGCAGC 60.001 47.619 0.00 0.00 43.65 5.25
1798 2268 0.316204 AGACAACATGCAAAGCAGCC 59.684 50.000 0.00 0.00 43.65 4.85
1799 2269 0.316204 GACAACATGCAAAGCAGCCT 59.684 50.000 0.00 0.00 43.65 4.58
1800 2270 1.541147 GACAACATGCAAAGCAGCCTA 59.459 47.619 0.00 0.00 43.65 3.93
1801 2271 2.165030 GACAACATGCAAAGCAGCCTAT 59.835 45.455 0.00 0.00 43.65 2.57
1802 2272 2.564062 ACAACATGCAAAGCAGCCTATT 59.436 40.909 0.00 0.00 43.65 1.73
1803 2273 3.007182 ACAACATGCAAAGCAGCCTATTT 59.993 39.130 0.00 0.00 43.65 1.40
1804 2274 3.967332 ACATGCAAAGCAGCCTATTTT 57.033 38.095 0.00 0.00 43.65 1.82
1805 2275 3.853475 ACATGCAAAGCAGCCTATTTTC 58.147 40.909 0.00 0.00 43.65 2.29
1806 2276 3.258872 ACATGCAAAGCAGCCTATTTTCA 59.741 39.130 0.00 0.00 43.65 2.69
1807 2277 3.581024 TGCAAAGCAGCCTATTTTCAG 57.419 42.857 0.00 0.00 33.32 3.02
1808 2278 2.892852 TGCAAAGCAGCCTATTTTCAGT 59.107 40.909 0.00 0.00 33.32 3.41
1809 2279 3.321682 TGCAAAGCAGCCTATTTTCAGTT 59.678 39.130 0.00 0.00 33.32 3.16
1810 2280 3.676646 GCAAAGCAGCCTATTTTCAGTTG 59.323 43.478 0.00 0.00 0.00 3.16
1811 2281 4.797275 GCAAAGCAGCCTATTTTCAGTTGT 60.797 41.667 0.00 0.00 0.00 3.32
1812 2282 4.773323 AAGCAGCCTATTTTCAGTTGTC 57.227 40.909 0.00 0.00 0.00 3.18
1813 2283 4.026356 AGCAGCCTATTTTCAGTTGTCT 57.974 40.909 0.00 0.00 0.00 3.41
1814 2284 3.755378 AGCAGCCTATTTTCAGTTGTCTG 59.245 43.478 0.00 0.00 42.54 3.51
1836 2306 9.530129 GTCTGAAATGACTTATAAAAGTGAACG 57.470 33.333 0.00 0.00 46.09 3.95
1837 2307 8.717821 TCTGAAATGACTTATAAAAGTGAACGG 58.282 33.333 0.00 0.00 46.09 4.44
1838 2308 8.610248 TGAAATGACTTATAAAAGTGAACGGA 57.390 30.769 0.00 0.00 46.09 4.69
1839 2309 8.717821 TGAAATGACTTATAAAAGTGAACGGAG 58.282 33.333 0.00 0.00 46.09 4.63
1840 2310 7.611213 AATGACTTATAAAAGTGAACGGAGG 57.389 36.000 0.00 0.00 46.09 4.30
1841 2311 5.484715 TGACTTATAAAAGTGAACGGAGGG 58.515 41.667 0.00 0.00 46.09 4.30
1842 2312 5.246656 TGACTTATAAAAGTGAACGGAGGGA 59.753 40.000 0.00 0.00 46.09 4.20
1843 2313 5.731591 ACTTATAAAAGTGAACGGAGGGAG 58.268 41.667 0.00 0.00 44.40 4.30
1844 2314 5.247792 ACTTATAAAAGTGAACGGAGGGAGT 59.752 40.000 0.00 0.00 44.40 3.85
1845 2315 6.438425 ACTTATAAAAGTGAACGGAGGGAGTA 59.562 38.462 0.00 0.00 44.40 2.59
1846 2316 3.679824 AAAAGTGAACGGAGGGAGTAG 57.320 47.619 0.00 0.00 0.00 2.57
1847 2317 2.305858 AAGTGAACGGAGGGAGTAGT 57.694 50.000 0.00 0.00 0.00 2.73
1848 2318 3.446442 AAGTGAACGGAGGGAGTAGTA 57.554 47.619 0.00 0.00 0.00 1.82
1849 2319 2.720915 AGTGAACGGAGGGAGTAGTAC 58.279 52.381 0.00 0.00 0.00 2.73
1850 2320 2.308275 AGTGAACGGAGGGAGTAGTACT 59.692 50.000 1.37 1.37 0.00 2.73
1851 2321 2.682352 GTGAACGGAGGGAGTAGTACTC 59.318 54.545 20.24 20.24 44.32 2.59
1852 2322 2.575279 TGAACGGAGGGAGTAGTACTCT 59.425 50.000 25.70 10.54 44.46 3.24
1853 2323 3.009916 TGAACGGAGGGAGTAGTACTCTT 59.990 47.826 25.70 16.28 44.46 2.85
1854 2324 3.735720 ACGGAGGGAGTAGTACTCTTT 57.264 47.619 25.70 15.96 44.46 2.52
1855 2325 4.851639 ACGGAGGGAGTAGTACTCTTTA 57.148 45.455 25.70 0.00 44.46 1.85
1856 2326 4.779696 ACGGAGGGAGTAGTACTCTTTAG 58.220 47.826 25.70 16.76 44.46 1.85
1857 2327 4.227073 ACGGAGGGAGTAGTACTCTTTAGT 59.773 45.833 25.70 17.27 44.46 2.24
1858 2328 4.575645 CGGAGGGAGTAGTACTCTTTAGTG 59.424 50.000 25.70 11.01 44.46 2.74
1859 2329 5.628666 CGGAGGGAGTAGTACTCTTTAGTGA 60.629 48.000 25.70 0.00 44.46 3.41
1860 2330 6.367161 GGAGGGAGTAGTACTCTTTAGTGAT 58.633 44.000 25.70 6.94 44.46 3.06
1861 2331 6.263617 GGAGGGAGTAGTACTCTTTAGTGATG 59.736 46.154 25.70 0.00 44.46 3.07
1862 2332 6.971340 AGGGAGTAGTACTCTTTAGTGATGA 58.029 40.000 25.70 0.00 44.46 2.92
1863 2333 7.057894 AGGGAGTAGTACTCTTTAGTGATGAG 58.942 42.308 25.70 0.00 44.46 2.90
1864 2334 6.829811 GGGAGTAGTACTCTTTAGTGATGAGT 59.170 42.308 25.70 8.29 44.46 3.41
1865 2335 7.201750 GGGAGTAGTACTCTTTAGTGATGAGTG 60.202 44.444 25.70 0.00 44.46 3.51
1866 2336 7.337436 GGAGTAGTACTCTTTAGTGATGAGTGT 59.663 40.741 25.70 4.17 44.46 3.55
1867 2337 8.638629 AGTAGTACTCTTTAGTGATGAGTGTT 57.361 34.615 12.20 4.72 41.39 3.32
1868 2338 9.080097 AGTAGTACTCTTTAGTGATGAGTGTTT 57.920 33.333 12.20 2.82 41.39 2.83
1871 2341 9.298250 AGTACTCTTTAGTGATGAGTGTTTAGA 57.702 33.333 12.20 0.00 41.39 2.10
1874 2344 8.807118 ACTCTTTAGTGATGAGTGTTTAGATCA 58.193 33.333 3.02 0.00 40.24 2.92
1875 2345 9.814899 CTCTTTAGTGATGAGTGTTTAGATCAT 57.185 33.333 0.00 0.00 36.40 2.45
1881 2351 9.950496 AGTGATGAGTGTTTAGATCATTAGTTT 57.050 29.630 0.00 0.00 33.90 2.66
1944 2414 7.554211 GGAGTAGTAACTAACTATTGCCTGTT 58.446 38.462 0.00 0.00 42.63 3.16
1946 2416 8.363761 AGTAGTAACTAACTATTGCCTGTTCT 57.636 34.615 0.00 0.00 42.63 3.01
1947 2417 8.468399 AGTAGTAACTAACTATTGCCTGTTCTC 58.532 37.037 0.00 0.00 42.63 2.87
1948 2418 6.331061 AGTAACTAACTATTGCCTGTTCTCG 58.669 40.000 0.00 0.00 36.36 4.04
1949 2419 4.803098 ACTAACTATTGCCTGTTCTCGT 57.197 40.909 0.00 0.00 0.00 4.18
1964 2455 6.910972 CCTGTTCTCGTAAAAAGGAAAGTTTC 59.089 38.462 7.09 7.09 0.00 2.78
2063 2558 6.259387 CGGTGGTAGGAAAATTATGGTAGTTC 59.741 42.308 0.00 0.00 0.00 3.01
2077 2572 5.841957 TGGTAGTTCGGTAGGATAGTTTC 57.158 43.478 0.00 0.00 0.00 2.78
2095 2590 2.806945 TCCTTTCATCATGGACCACC 57.193 50.000 0.00 0.00 0.00 4.61
2232 2742 7.654022 TCTTTTGGTTACAAGAAGGTTTGAT 57.346 32.000 0.00 0.00 37.97 2.57
2286 2797 3.074390 ACTCATGTTCAATTGTCCCTCCA 59.926 43.478 5.13 0.00 0.00 3.86
2473 2984 1.808411 GGATGAACTCCGACAAGCAA 58.192 50.000 0.00 0.00 33.29 3.91
2802 3370 1.089920 CCATGACTGTAAGCAGCCAC 58.910 55.000 0.00 0.00 46.30 5.01
2830 3398 8.049655 AGAAGCAGAGAGGATTAAATTGAAAC 57.950 34.615 0.00 0.00 0.00 2.78
2928 3496 9.896645 TTCTGCTTCTTATCTGATTTGTTATCT 57.103 29.630 0.00 0.00 0.00 1.98
3022 3591 2.617308 GCTGACTACATCAAGCATGCAT 59.383 45.455 21.98 4.57 36.69 3.96
3112 3684 4.998033 TGGTTGTATTTGCATGTTCGAGTA 59.002 37.500 0.00 0.00 0.00 2.59
3394 3966 1.165907 TCTGCTGAAACGCCTTGTGG 61.166 55.000 0.00 0.00 0.00 4.17
3482 4060 5.036117 AGAACTTCTGAAACAAGCAGGTA 57.964 39.130 0.00 0.00 34.20 3.08
3738 4316 5.009610 TGCCAGTCAAAGTAAATTCAAGACC 59.990 40.000 0.00 0.00 0.00 3.85
3981 4559 2.305927 CCTAAGGGAGAAGGTTCAGCAA 59.694 50.000 0.00 0.00 33.58 3.91
4038 4616 1.802136 GCTCTCTCAGATGCAAGGTCG 60.802 57.143 0.00 0.00 0.00 4.79
4056 4634 4.580580 AGGTCGAAGTTCTTTGAAGCAAAT 59.419 37.500 0.56 0.00 32.70 2.32
4133 4711 5.301298 GCATTAATTCATCTGGAAAGCTCCT 59.699 40.000 0.00 0.00 42.94 3.69
4165 4794 6.766944 TGAGGTTAATGTTAGTTCCGAAACAA 59.233 34.615 0.00 0.00 38.95 2.83
4193 4822 1.395954 CAGCACATCACCAGTGAATCG 59.604 52.381 4.31 0.00 43.58 3.34
4252 4881 1.810030 GAGGACGGTGGTGCGATTC 60.810 63.158 0.00 0.00 39.82 2.52
4350 4979 1.906574 TGGGATGTGGTTACTGACTCC 59.093 52.381 0.00 0.00 0.00 3.85
4417 5046 1.978580 AGGAAGTGAGGGATTCGTTGT 59.021 47.619 0.00 0.00 0.00 3.32
4515 5144 5.597806 TCCCAGTGTTATGCGTATAGAAAG 58.402 41.667 0.00 0.00 0.00 2.62
4578 5210 8.020819 ACATTGACATAATTTTGTTCCTGTACG 58.979 33.333 2.94 0.00 0.00 3.67
4866 5512 9.243105 ACTTGTCCTATAATTAACTGCAATTGT 57.757 29.630 7.40 0.00 30.84 2.71
4979 5626 1.768684 AAAAGGCTCGGCTGGAGTGA 61.769 55.000 7.08 0.00 45.03 3.41
5086 5733 1.739466 GCATCAAAGAGCATCGTGGAA 59.261 47.619 0.00 0.00 42.67 3.53
5128 5775 1.003003 GGCTCTCTTTCAGTTCTGCCT 59.997 52.381 0.00 0.00 36.52 4.75
5170 5852 5.089970 TCTAACAACATCAGCAGCATAGT 57.910 39.130 0.00 0.00 0.00 2.12
5212 5894 6.497259 TCTGGTTCCTGACACTAGTTTAATCT 59.503 38.462 0.00 0.00 0.00 2.40
5320 6002 0.324943 TTACCTGAGTGCAAGGGAGC 59.675 55.000 7.81 0.00 0.00 4.70
5361 6043 0.877213 GGTTGGCTTGTTGCAGCTTG 60.877 55.000 1.17 0.00 45.15 4.01
5375 6057 3.054434 TGCAGCTTGTTAGTGGTATGGAT 60.054 43.478 0.00 0.00 0.00 3.41
5489 6171 7.173907 GTGATGGCTACGAGGTAAACTACTATA 59.826 40.741 0.00 0.00 0.00 1.31
5493 6175 9.224267 TGGCTACGAGGTAAACTACTATATTAG 57.776 37.037 0.00 0.00 0.00 1.73
5520 6202 4.291783 GTGTTATTCTAGCCTAGTCTGCG 58.708 47.826 0.00 0.00 0.00 5.18
5624 6307 6.900186 AGAATTCTAAGATCACTCCTCTGGAA 59.100 38.462 6.06 0.00 0.00 3.53
5655 6338 2.094494 GTCATCTCAGAACTCTTCGGCA 60.094 50.000 0.00 0.00 34.02 5.69
5683 6366 0.179000 AAGCTGCTGGATAACTCCCG 59.821 55.000 1.35 0.00 41.29 5.14
5711 6394 1.066858 GGCACTGAAGAGATCGTGGAA 60.067 52.381 0.00 0.00 34.94 3.53
5712 6395 2.612972 GGCACTGAAGAGATCGTGGAAA 60.613 50.000 0.00 0.00 34.94 3.13
6123 6809 4.181010 CCGCTGGATGAGGTGGGG 62.181 72.222 0.00 0.00 0.00 4.96
6129 6815 1.701847 CTGGATGAGGTGGGGATAAGG 59.298 57.143 0.00 0.00 0.00 2.69
6181 6889 9.308000 TCAGGATGTTAAAAATTCTTGGTGTAT 57.692 29.630 0.00 0.00 37.40 2.29
6219 6936 1.903183 GAGTTTAGTCAGTCAGGGCCT 59.097 52.381 0.00 0.00 0.00 5.19
6255 6972 0.323629 ACCTGGTGACCCGTGTTATG 59.676 55.000 0.00 0.00 0.00 1.90
6284 7021 1.269621 GGTGCGGTCGCTGTAATAGAT 60.270 52.381 16.36 0.00 42.51 1.98
6285 7022 2.030540 GGTGCGGTCGCTGTAATAGATA 60.031 50.000 16.36 0.00 42.51 1.98
6286 7023 3.235195 GTGCGGTCGCTGTAATAGATAG 58.765 50.000 16.36 0.00 42.51 2.08
6287 7024 3.058432 GTGCGGTCGCTGTAATAGATAGA 60.058 47.826 16.36 0.00 42.51 1.98
6289 7026 3.913163 GCGGTCGCTGTAATAGATAGAAC 59.087 47.826 8.20 0.00 38.26 3.01
6291 7028 5.383958 CGGTCGCTGTAATAGATAGAACTC 58.616 45.833 0.00 0.00 0.00 3.01
6293 7030 6.375377 GGTCGCTGTAATAGATAGAACTCAG 58.625 44.000 0.00 0.00 0.00 3.35
6294 7031 6.016943 GGTCGCTGTAATAGATAGAACTCAGT 60.017 42.308 0.00 0.00 0.00 3.41
6295 7032 7.172875 GGTCGCTGTAATAGATAGAACTCAGTA 59.827 40.741 0.00 0.00 0.00 2.74
6296 7033 8.557864 GTCGCTGTAATAGATAGAACTCAGTAA 58.442 37.037 0.00 0.00 0.00 2.24
6368 7108 8.352942 GTTGGATGTTAAACTCTTGAATCACTT 58.647 33.333 0.00 0.00 0.00 3.16
6501 7347 0.599558 GTTTGGCTCAGCATTGCAGA 59.400 50.000 11.91 7.53 0.00 4.26
6550 7396 0.397564 GGGGGTTGTACCGAAGTTGA 59.602 55.000 0.00 0.00 39.83 3.18
6595 7441 3.653164 ACCCTCAAAACAACTGGGATTT 58.347 40.909 3.13 0.00 40.23 2.17
6620 7466 1.605710 CTTGACTTGCTCAACCACCTG 59.394 52.381 0.00 0.00 33.65 4.00
6621 7467 0.179020 TGACTTGCTCAACCACCTGG 60.179 55.000 0.00 0.00 42.17 4.45
6622 7468 0.890996 GACTTGCTCAACCACCTGGG 60.891 60.000 0.00 0.00 44.81 4.45
6623 7469 2.203480 TTGCTCAACCACCTGGGC 60.203 61.111 0.00 0.00 43.58 5.36
6624 7470 2.703675 CTTGCTCAACCACCTGGGCT 62.704 60.000 0.00 0.00 43.67 5.19
6625 7471 2.116125 GCTCAACCACCTGGGCTT 59.884 61.111 0.00 0.00 39.88 4.35
6628 7474 0.111253 CTCAACCACCTGGGCTTTCT 59.889 55.000 0.00 0.00 42.05 2.52
6639 7485 4.483711 GCTTTCTGCCGCATTTCC 57.516 55.556 0.00 0.00 35.15 3.13
6688 7534 1.602237 GCGGGTCCTTCTCAATGGA 59.398 57.895 0.00 0.00 0.00 3.41
6734 7580 2.356667 GAGGGTTGAGGCAAGGGG 59.643 66.667 0.00 0.00 0.00 4.79
6749 7595 3.116318 GGGACCCCCTCTCACCTA 58.884 66.667 0.00 0.00 41.34 3.08
6754 7600 0.563672 ACCCCCTCTCACCTATCCTC 59.436 60.000 0.00 0.00 0.00 3.71
6761 7607 3.431486 CCTCTCACCTATCCTCTTTGTGC 60.431 52.174 0.00 0.00 0.00 4.57
6779 7625 1.207811 TGCTTGCGATTGATCCTCTCA 59.792 47.619 0.00 0.00 0.00 3.27
6793 7639 7.199167 TGATCCTCTCAACCATATTCTTCAA 57.801 36.000 0.00 0.00 0.00 2.69
6849 7695 4.166531 TGGAGGAAATGTGATGATGATCCA 59.833 41.667 0.00 0.00 0.00 3.41
6887 7733 1.608590 ACGATGCTGTGGTTTTCCTTG 59.391 47.619 0.00 0.00 41.38 3.61
6918 7764 2.158449 AGCTGAAGTCAAATTCTTCGCG 59.842 45.455 0.00 0.00 42.68 5.87
6920 7766 2.736721 CTGAAGTCAAATTCTTCGCGGA 59.263 45.455 6.13 0.00 42.68 5.54
6948 7794 2.032681 GGCTTTGGCGAGGTCACT 59.967 61.111 0.00 0.00 39.81 3.41
7011 7857 1.302949 CTTCATTCCTTCCCCGCCA 59.697 57.895 0.00 0.00 0.00 5.69
7014 7860 1.000896 CATTCCTTCCCCGCCAACT 60.001 57.895 0.00 0.00 0.00 3.16
7037 7883 4.665009 TGCTCCACCTTCCCTATGAAATAT 59.335 41.667 0.00 0.00 31.06 1.28
7038 7884 5.221925 TGCTCCACCTTCCCTATGAAATATC 60.222 44.000 0.00 0.00 31.06 1.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.596603 CCATGCGGCAATGTCATAGA 58.403 50.000 6.82 0.00 0.00 1.98
80 81 1.562008 TCCACCTGAGTCTCGATCTCT 59.438 52.381 15.41 2.47 33.59 3.10
115 116 5.518847 CGCCGAATGTTAAGATTCTTCTACA 59.481 40.000 19.67 13.49 31.19 2.74
118 119 3.871594 CCGCCGAATGTTAAGATTCTTCT 59.128 43.478 19.67 0.00 31.19 2.85
171 172 2.103094 TGGGAGCAACGAGAATCATAGG 59.897 50.000 0.00 0.00 33.17 2.57
173 174 3.531538 GTTGGGAGCAACGAGAATCATA 58.468 45.455 0.00 0.00 33.17 2.15
174 175 2.359900 GTTGGGAGCAACGAGAATCAT 58.640 47.619 0.00 0.00 33.17 2.45
175 176 1.808411 GTTGGGAGCAACGAGAATCA 58.192 50.000 0.00 0.00 33.17 2.57
192 193 1.129998 CTCCACGTCGTCACTATCGTT 59.870 52.381 0.00 0.00 34.30 3.85
203 204 2.278206 CTCGCCATCTCCACGTCG 60.278 66.667 0.00 0.00 0.00 5.12
206 207 1.079127 AAACCTCGCCATCTCCACG 60.079 57.895 0.00 0.00 0.00 4.94
218 219 1.648467 GATGCTCCCGTGCAAACCTC 61.648 60.000 0.00 0.00 46.61 3.85
252 253 4.144681 CTTGTGCTCGCGCTCTGC 62.145 66.667 5.56 7.55 41.47 4.26
254 255 1.735920 CTTCTTGTGCTCGCGCTCT 60.736 57.895 5.56 0.00 36.97 4.09
266 291 2.169832 TCTTCACCGCCTTCTTCTTG 57.830 50.000 0.00 0.00 0.00 3.02
334 360 0.464452 CCAAGTCATCCTACCCCGAC 59.536 60.000 0.00 0.00 0.00 4.79
340 366 2.962421 CTCCTCCTCCAAGTCATCCTAC 59.038 54.545 0.00 0.00 0.00 3.18
351 377 2.045242 CGTCGTCCTCCTCCTCCA 60.045 66.667 0.00 0.00 0.00 3.86
361 387 1.480219 GGTCATCGCATTCGTCGTCC 61.480 60.000 0.00 0.00 36.96 4.79
364 390 1.399572 CTAGGTCATCGCATTCGTCG 58.600 55.000 0.00 0.00 36.96 5.12
367 393 1.524355 CTTGCTAGGTCATCGCATTCG 59.476 52.381 0.00 0.00 33.15 3.34
368 394 1.869767 CCTTGCTAGGTCATCGCATTC 59.130 52.381 5.98 0.00 36.74 2.67
369 395 1.486310 TCCTTGCTAGGTCATCGCATT 59.514 47.619 14.12 0.00 42.60 3.56
370 396 1.123077 TCCTTGCTAGGTCATCGCAT 58.877 50.000 14.12 0.00 42.60 4.73
371 397 0.175760 GTCCTTGCTAGGTCATCGCA 59.824 55.000 14.12 0.00 42.60 5.10
372 398 0.872021 CGTCCTTGCTAGGTCATCGC 60.872 60.000 14.12 0.00 42.60 4.58
373 399 0.738975 TCGTCCTTGCTAGGTCATCG 59.261 55.000 14.12 13.63 42.60 3.84
376 402 3.833732 AGATATCGTCCTTGCTAGGTCA 58.166 45.455 14.12 0.00 42.60 4.02
381 407 4.011023 GCTCCTAGATATCGTCCTTGCTA 58.989 47.826 0.00 0.00 0.00 3.49
383 409 2.558795 TGCTCCTAGATATCGTCCTTGC 59.441 50.000 0.00 0.54 0.00 4.01
412 438 2.493713 AACTACTCATCATCGTCGCC 57.506 50.000 0.00 0.00 0.00 5.54
725 792 4.741185 GGCGTTTCGGTTATTTTCAGTTTT 59.259 37.500 0.00 0.00 0.00 2.43
726 793 4.292599 GGCGTTTCGGTTATTTTCAGTTT 58.707 39.130 0.00 0.00 0.00 2.66
727 794 3.304861 GGGCGTTTCGGTTATTTTCAGTT 60.305 43.478 0.00 0.00 0.00 3.16
728 795 2.227149 GGGCGTTTCGGTTATTTTCAGT 59.773 45.455 0.00 0.00 0.00 3.41
924 1021 5.320277 CAATCTGTTCTTCCTTCTCCCTTT 58.680 41.667 0.00 0.00 0.00 3.11
1306 1442 3.367806 CGAGGATGATAGTGGTGCATAGG 60.368 52.174 0.00 0.00 0.00 2.57
1315 1462 4.355437 GAGACAACACGAGGATGATAGTG 58.645 47.826 0.00 0.00 40.17 2.74
1321 1468 1.618861 GACGAGACAACACGAGGATG 58.381 55.000 0.00 0.00 34.51 3.51
1343 1490 1.338136 ACCAGTAAGGATGGGAGCCG 61.338 60.000 0.00 0.00 42.48 5.52
1346 1493 2.571653 TGTTCACCAGTAAGGATGGGAG 59.428 50.000 0.00 0.00 42.48 4.30
1367 1523 1.135915 CAGCAGAGGACGCAACTATCT 59.864 52.381 0.00 0.00 0.00 1.98
1380 1778 6.992063 AATAATACCACTTCAACAGCAGAG 57.008 37.500 0.00 0.00 0.00 3.35
1427 1833 4.790718 ACTGTAAAACCTTCCAGGAACT 57.209 40.909 0.00 0.00 37.67 3.01
1502 1959 5.701224 TCCCAAAGAATGTTACTTCCACTT 58.299 37.500 0.00 0.00 0.00 3.16
1506 1963 7.931407 ACAAAATTCCCAAAGAATGTTACTTCC 59.069 33.333 0.00 0.00 44.75 3.46
1529 1994 2.242196 ACTACCTACCTACCGCCTACAA 59.758 50.000 0.00 0.00 0.00 2.41
1531 1996 2.499197 GACTACCTACCTACCGCCTAC 58.501 57.143 0.00 0.00 0.00 3.18
1533 1998 0.179034 CGACTACCTACCTACCGCCT 60.179 60.000 0.00 0.00 0.00 5.52
1554 2019 3.387050 ACCCGTGAGACTAACTTCAGTTT 59.613 43.478 0.00 0.00 39.31 2.66
1556 2021 2.296471 CACCCGTGAGACTAACTTCAGT 59.704 50.000 0.00 0.00 0.00 3.41
1565 2030 3.991051 CGTGGCACCCGTGAGACT 61.991 66.667 12.86 0.00 0.00 3.24
1619 2085 4.897076 GGAAAACCCCAAACTAAAGAAGGA 59.103 41.667 0.00 0.00 0.00 3.36
1678 2148 6.038382 CGAGCTACAGATAAACTTGAGACCTA 59.962 42.308 0.00 0.00 0.00 3.08
1688 2158 4.033014 GCTTTCACCGAGCTACAGATAAAC 59.967 45.833 0.00 0.00 37.18 2.01
1700 2170 1.459592 CCTGTTTACGCTTTCACCGAG 59.540 52.381 0.00 0.00 0.00 4.63
1739 2209 7.317722 ACTTATAAAAGTGAACAGAGGGAGT 57.682 36.000 0.00 0.00 44.40 3.85
1740 2210 6.819146 GGACTTATAAAAGTGAACAGAGGGAG 59.181 42.308 0.00 0.00 46.09 4.30
1741 2211 6.500751 AGGACTTATAAAAGTGAACAGAGGGA 59.499 38.462 0.00 0.00 46.09 4.20
1743 2213 7.878127 TCAAGGACTTATAAAAGTGAACAGAGG 59.122 37.037 0.00 0.00 46.09 3.69
1744 2214 8.833231 TCAAGGACTTATAAAAGTGAACAGAG 57.167 34.615 0.00 0.00 46.09 3.35
1745 2215 9.273016 CTTCAAGGACTTATAAAAGTGAACAGA 57.727 33.333 0.00 0.00 46.09 3.41
1746 2216 9.273016 TCTTCAAGGACTTATAAAAGTGAACAG 57.727 33.333 0.00 0.00 46.09 3.16
1747 2217 9.052759 GTCTTCAAGGACTTATAAAAGTGAACA 57.947 33.333 0.00 0.00 46.09 3.18
1748 2218 9.052759 TGTCTTCAAGGACTTATAAAAGTGAAC 57.947 33.333 0.00 0.00 46.09 3.18
1749 2219 9.793259 ATGTCTTCAAGGACTTATAAAAGTGAA 57.207 29.630 0.00 0.00 46.09 3.18
1750 2220 9.793259 AATGTCTTCAAGGACTTATAAAAGTGA 57.207 29.630 0.00 0.00 46.09 3.41
1756 2226 9.436957 GTCTGAAATGTCTTCAAGGACTTATAA 57.563 33.333 0.00 0.00 37.16 0.98
1757 2227 8.593679 TGTCTGAAATGTCTTCAAGGACTTATA 58.406 33.333 7.80 0.00 37.16 0.98
1758 2228 7.453393 TGTCTGAAATGTCTTCAAGGACTTAT 58.547 34.615 7.80 0.00 37.16 1.73
1759 2229 6.826668 TGTCTGAAATGTCTTCAAGGACTTA 58.173 36.000 7.80 0.00 37.16 2.24
1760 2230 5.684704 TGTCTGAAATGTCTTCAAGGACTT 58.315 37.500 7.80 0.00 37.16 3.01
1761 2231 5.296151 TGTCTGAAATGTCTTCAAGGACT 57.704 39.130 7.80 0.00 37.16 3.85
1762 2232 5.296780 TGTTGTCTGAAATGTCTTCAAGGAC 59.703 40.000 0.00 0.00 36.81 3.85
1763 2233 5.436175 TGTTGTCTGAAATGTCTTCAAGGA 58.564 37.500 0.00 0.00 0.00 3.36
1764 2234 5.756195 TGTTGTCTGAAATGTCTTCAAGG 57.244 39.130 0.00 0.00 0.00 3.61
1765 2235 5.628193 GCATGTTGTCTGAAATGTCTTCAAG 59.372 40.000 0.00 0.00 0.00 3.02
1766 2236 5.067544 TGCATGTTGTCTGAAATGTCTTCAA 59.932 36.000 0.00 0.00 0.00 2.69
1767 2237 4.579753 TGCATGTTGTCTGAAATGTCTTCA 59.420 37.500 0.00 0.00 0.00 3.02
1768 2238 5.112220 TGCATGTTGTCTGAAATGTCTTC 57.888 39.130 0.00 0.00 0.00 2.87
1769 2239 5.518848 TTGCATGTTGTCTGAAATGTCTT 57.481 34.783 0.00 0.00 0.00 3.01
1770 2240 5.518848 TTTGCATGTTGTCTGAAATGTCT 57.481 34.783 0.00 0.00 0.00 3.41
1771 2241 4.149396 GCTTTGCATGTTGTCTGAAATGTC 59.851 41.667 0.00 0.00 0.00 3.06
1772 2242 4.053295 GCTTTGCATGTTGTCTGAAATGT 58.947 39.130 0.00 0.00 0.00 2.71
1773 2243 4.052608 TGCTTTGCATGTTGTCTGAAATG 58.947 39.130 0.00 0.00 31.71 2.32
1774 2244 4.304110 CTGCTTTGCATGTTGTCTGAAAT 58.696 39.130 0.00 0.00 38.13 2.17
1775 2245 3.708890 CTGCTTTGCATGTTGTCTGAAA 58.291 40.909 0.00 0.00 38.13 2.69
1776 2246 2.544277 GCTGCTTTGCATGTTGTCTGAA 60.544 45.455 0.00 0.00 38.13 3.02
1777 2247 1.001048 GCTGCTTTGCATGTTGTCTGA 60.001 47.619 0.00 0.00 38.13 3.27
1778 2248 1.415374 GCTGCTTTGCATGTTGTCTG 58.585 50.000 0.00 0.00 38.13 3.51
1779 2249 0.316204 GGCTGCTTTGCATGTTGTCT 59.684 50.000 0.00 0.00 38.13 3.41
1780 2250 0.316204 AGGCTGCTTTGCATGTTGTC 59.684 50.000 0.00 0.00 38.13 3.18
1781 2251 1.619654 TAGGCTGCTTTGCATGTTGT 58.380 45.000 0.00 0.00 38.13 3.32
1782 2252 2.953466 ATAGGCTGCTTTGCATGTTG 57.047 45.000 0.00 0.00 38.13 3.33
1783 2253 3.967332 AAATAGGCTGCTTTGCATGTT 57.033 38.095 0.00 0.00 38.13 2.71
1784 2254 3.258872 TGAAAATAGGCTGCTTTGCATGT 59.741 39.130 0.00 0.00 38.13 3.21
1785 2255 3.852286 TGAAAATAGGCTGCTTTGCATG 58.148 40.909 0.00 0.00 38.13 4.06
1786 2256 3.512724 ACTGAAAATAGGCTGCTTTGCAT 59.487 39.130 0.00 0.00 38.13 3.96
1787 2257 2.892852 ACTGAAAATAGGCTGCTTTGCA 59.107 40.909 0.00 0.99 36.92 4.08
1788 2258 3.582714 ACTGAAAATAGGCTGCTTTGC 57.417 42.857 0.00 0.00 0.00 3.68
1789 2259 4.874970 ACAACTGAAAATAGGCTGCTTTG 58.125 39.130 0.00 0.00 0.00 2.77
1790 2260 4.829492 AGACAACTGAAAATAGGCTGCTTT 59.171 37.500 0.00 0.00 0.00 3.51
1791 2261 4.217118 CAGACAACTGAAAATAGGCTGCTT 59.783 41.667 0.00 0.00 46.03 3.91
1792 2262 3.755378 CAGACAACTGAAAATAGGCTGCT 59.245 43.478 0.00 0.00 46.03 4.24
1793 2263 4.088823 CAGACAACTGAAAATAGGCTGC 57.911 45.455 0.00 0.00 46.03 5.25
1810 2280 9.530129 CGTTCACTTTTATAAGTCATTTCAGAC 57.470 33.333 0.00 0.00 42.67 3.51
1811 2281 8.717821 CCGTTCACTTTTATAAGTCATTTCAGA 58.282 33.333 0.00 0.00 42.67 3.27
1812 2282 8.717821 TCCGTTCACTTTTATAAGTCATTTCAG 58.282 33.333 0.00 0.00 42.67 3.02
1813 2283 8.610248 TCCGTTCACTTTTATAAGTCATTTCA 57.390 30.769 0.00 0.00 42.67 2.69
1814 2284 8.175716 CCTCCGTTCACTTTTATAAGTCATTTC 58.824 37.037 0.00 0.00 42.67 2.17
1815 2285 7.120726 CCCTCCGTTCACTTTTATAAGTCATTT 59.879 37.037 0.00 0.00 42.67 2.32
1816 2286 6.598064 CCCTCCGTTCACTTTTATAAGTCATT 59.402 38.462 0.00 0.00 42.67 2.57
1817 2287 6.070424 TCCCTCCGTTCACTTTTATAAGTCAT 60.070 38.462 0.00 0.00 42.67 3.06
1818 2288 5.246656 TCCCTCCGTTCACTTTTATAAGTCA 59.753 40.000 0.00 0.00 42.67 3.41
1819 2289 5.727434 TCCCTCCGTTCACTTTTATAAGTC 58.273 41.667 0.00 0.00 42.67 3.01
1820 2290 5.247792 ACTCCCTCCGTTCACTTTTATAAGT 59.752 40.000 0.00 0.00 45.40 2.24
1821 2291 5.731591 ACTCCCTCCGTTCACTTTTATAAG 58.268 41.667 0.00 0.00 37.40 1.73
1822 2292 5.750352 ACTCCCTCCGTTCACTTTTATAA 57.250 39.130 0.00 0.00 0.00 0.98
1823 2293 5.954150 ACTACTCCCTCCGTTCACTTTTATA 59.046 40.000 0.00 0.00 0.00 0.98
1824 2294 4.776308 ACTACTCCCTCCGTTCACTTTTAT 59.224 41.667 0.00 0.00 0.00 1.40
1825 2295 4.154942 ACTACTCCCTCCGTTCACTTTTA 58.845 43.478 0.00 0.00 0.00 1.52
1826 2296 2.970640 ACTACTCCCTCCGTTCACTTTT 59.029 45.455 0.00 0.00 0.00 2.27
1827 2297 2.606378 ACTACTCCCTCCGTTCACTTT 58.394 47.619 0.00 0.00 0.00 2.66
1828 2298 2.305858 ACTACTCCCTCCGTTCACTT 57.694 50.000 0.00 0.00 0.00 3.16
1829 2299 2.308275 AGTACTACTCCCTCCGTTCACT 59.692 50.000 0.00 0.00 0.00 3.41
1830 2300 2.682352 GAGTACTACTCCCTCCGTTCAC 59.318 54.545 5.01 0.00 39.28 3.18
1831 2301 2.575279 AGAGTACTACTCCCTCCGTTCA 59.425 50.000 11.94 0.00 46.18 3.18
1832 2302 3.280197 AGAGTACTACTCCCTCCGTTC 57.720 52.381 11.94 0.00 46.18 3.95
1833 2303 3.735720 AAGAGTACTACTCCCTCCGTT 57.264 47.619 11.94 0.00 46.18 4.44
1834 2304 3.735720 AAAGAGTACTACTCCCTCCGT 57.264 47.619 11.94 0.00 46.18 4.69
1835 2305 4.575645 CACTAAAGAGTACTACTCCCTCCG 59.424 50.000 11.94 1.86 46.18 4.63
1836 2306 5.753716 TCACTAAAGAGTACTACTCCCTCC 58.246 45.833 11.94 0.00 46.18 4.30
1837 2307 7.055378 TCATCACTAAAGAGTACTACTCCCTC 58.945 42.308 11.94 0.00 46.18 4.30
1838 2308 6.971340 TCATCACTAAAGAGTACTACTCCCT 58.029 40.000 11.94 3.39 46.18 4.20
1839 2309 6.829811 ACTCATCACTAAAGAGTACTACTCCC 59.170 42.308 11.94 0.00 46.18 4.30
1840 2310 7.337436 ACACTCATCACTAAAGAGTACTACTCC 59.663 40.741 11.94 0.00 46.18 3.85
1841 2311 8.271312 ACACTCATCACTAAAGAGTACTACTC 57.729 38.462 8.02 8.02 45.38 2.59
1842 2312 8.638629 AACACTCATCACTAAAGAGTACTACT 57.361 34.615 0.00 0.00 40.42 2.57
1845 2315 9.298250 TCTAAACACTCATCACTAAAGAGTACT 57.702 33.333 0.00 0.00 40.42 2.73
1848 2318 8.807118 TGATCTAAACACTCATCACTAAAGAGT 58.193 33.333 0.00 0.00 42.97 3.24
1849 2319 9.814899 ATGATCTAAACACTCATCACTAAAGAG 57.185 33.333 0.00 0.00 35.56 2.85
1855 2325 9.950496 AAACTAATGATCTAAACACTCATCACT 57.050 29.630 0.00 0.00 0.00 3.41
1904 2374 9.765295 AGTTACTACTCCCTCTGTAAAGAAATA 57.235 33.333 0.00 0.00 0.00 1.40
1905 2375 8.667592 AGTTACTACTCCCTCTGTAAAGAAAT 57.332 34.615 0.00 0.00 0.00 2.17
1906 2376 9.592196 TTAGTTACTACTCCCTCTGTAAAGAAA 57.408 33.333 0.00 0.00 35.78 2.52
1907 2377 9.018582 GTTAGTTACTACTCCCTCTGTAAAGAA 57.981 37.037 0.00 0.00 35.78 2.52
1908 2378 8.389366 AGTTAGTTACTACTCCCTCTGTAAAGA 58.611 37.037 0.00 0.00 34.56 2.52
1909 2379 8.578448 AGTTAGTTACTACTCCCTCTGTAAAG 57.422 38.462 0.00 0.00 34.56 1.85
1912 2382 9.624373 CAATAGTTAGTTACTACTCCCTCTGTA 57.376 37.037 0.00 0.00 41.99 2.74
1913 2383 7.068470 GCAATAGTTAGTTACTACTCCCTCTGT 59.932 40.741 0.00 0.00 41.99 3.41
1914 2384 7.427214 GCAATAGTTAGTTACTACTCCCTCTG 58.573 42.308 0.00 0.00 41.99 3.35
1915 2385 6.550481 GGCAATAGTTAGTTACTACTCCCTCT 59.450 42.308 0.00 0.00 41.99 3.69
1916 2386 6.550481 AGGCAATAGTTAGTTACTACTCCCTC 59.450 42.308 0.00 0.00 41.99 4.30
1917 2387 6.324254 CAGGCAATAGTTAGTTACTACTCCCT 59.676 42.308 0.00 0.00 41.99 4.20
1918 2388 6.097981 ACAGGCAATAGTTAGTTACTACTCCC 59.902 42.308 0.00 0.00 41.99 4.30
1919 2389 7.110043 ACAGGCAATAGTTAGTTACTACTCC 57.890 40.000 0.00 0.00 41.99 3.85
1920 2390 8.468399 AGAACAGGCAATAGTTAGTTACTACTC 58.532 37.037 0.00 0.00 41.99 2.59
1921 2391 8.363761 AGAACAGGCAATAGTTAGTTACTACT 57.636 34.615 0.00 0.00 41.99 2.57
1922 2392 7.431668 CGAGAACAGGCAATAGTTAGTTACTAC 59.568 40.741 0.00 0.00 41.99 2.73
1923 2393 7.121759 ACGAGAACAGGCAATAGTTAGTTACTA 59.878 37.037 0.00 0.00 43.29 1.82
1992 2484 7.148623 GCTAACTTAAGCAGTTACAACCTACAG 60.149 40.741 1.29 0.00 44.56 2.74
2021 2516 3.304659 CCACCGAAACAACCTGAAATCAG 60.305 47.826 3.37 3.37 43.40 2.90
2077 2572 2.372264 CAGGTGGTCCATGATGAAAGG 58.628 52.381 0.00 0.00 35.89 3.11
2095 2590 5.990668 AGGTATACTTCTAAGCCAAACCAG 58.009 41.667 2.25 0.00 0.00 4.00
2232 2742 7.818930 TGATCAAGCATGTATCGCTAATTCATA 59.181 33.333 0.00 0.00 39.29 2.15
2286 2797 5.527582 GGATAACCAATCGTAGAATTGCTGT 59.472 40.000 0.00 0.00 36.54 4.40
2473 2984 3.181507 CGCATTTCCACATCATTCTTCGT 60.182 43.478 0.00 0.00 0.00 3.85
2802 3370 7.046652 TCAATTTAATCCTCTCTGCTTCTCTG 58.953 38.462 0.00 0.00 0.00 3.35
2830 3398 6.267817 TCTGAAGTTTGCTTTCAAGATGTTG 58.732 36.000 0.00 0.00 34.61 3.33
2928 3496 3.075283 TCCTCTTGGCCTGTTCCAATAAA 59.925 43.478 3.32 0.00 44.39 1.40
2934 3503 0.693049 TCTTCCTCTTGGCCTGTTCC 59.307 55.000 3.32 0.00 0.00 3.62
2998 3567 3.303857 GCATGCTTGATGTAGTCAGCATC 60.304 47.826 11.37 0.00 43.48 3.91
3003 3572 6.947644 AAATATGCATGCTTGATGTAGTCA 57.052 33.333 20.33 0.00 34.14 3.41
3137 3709 5.221843 ACAAAACTTCTCCAGCACCTATACA 60.222 40.000 0.00 0.00 0.00 2.29
3138 3710 5.122396 CACAAAACTTCTCCAGCACCTATAC 59.878 44.000 0.00 0.00 0.00 1.47
3738 4316 3.651803 TTGTCAAAATTAACCAGCCGG 57.348 42.857 0.00 0.00 38.77 6.13
3901 4479 5.163205 CCTTCATATCATGGGTGAGGTTGTA 60.163 44.000 0.00 0.00 37.87 2.41
3981 4559 0.837691 TCCCTGCATCACCACTCAGT 60.838 55.000 0.00 0.00 0.00 3.41
4038 4616 7.115947 CCATTCTCATTTGCTTCAAAGAACTTC 59.884 37.037 0.00 0.00 36.76 3.01
4165 4794 1.171308 GGTGATGTGCTGCTTGATGT 58.829 50.000 0.00 0.00 0.00 3.06
4193 4822 1.759445 TCTGCTCATTCTCTGTAGGCC 59.241 52.381 0.00 0.00 0.00 5.19
4350 4979 3.260380 AGTCAGGTTTGTCTCCTCTCATG 59.740 47.826 0.00 0.00 32.37 3.07
4515 5144 6.753897 AAAAAGAAGCAATTCGATGACAAC 57.246 33.333 0.00 0.00 0.00 3.32
4578 5210 3.735514 GCCTGACTCGAGTACCTTCATTC 60.736 52.174 20.09 2.92 0.00 2.67
4862 5508 8.584157 TGTTAGAATCCACTGCATTAAAACAAT 58.416 29.630 0.00 0.00 0.00 2.71
4864 5510 7.517614 TGTTAGAATCCACTGCATTAAAACA 57.482 32.000 0.00 0.00 0.00 2.83
4865 5511 8.986477 AATGTTAGAATCCACTGCATTAAAAC 57.014 30.769 0.00 0.00 31.07 2.43
4866 5512 9.995003 AAAATGTTAGAATCCACTGCATTAAAA 57.005 25.926 0.00 0.00 31.85 1.52
4867 5513 9.995003 AAAAATGTTAGAATCCACTGCATTAAA 57.005 25.926 0.00 0.00 31.85 1.52
4868 5514 9.638239 GAAAAATGTTAGAATCCACTGCATTAA 57.362 29.630 0.00 0.00 31.85 1.40
4869 5515 9.023962 AGAAAAATGTTAGAATCCACTGCATTA 57.976 29.630 0.00 0.00 31.85 1.90
4870 5516 7.816031 CAGAAAAATGTTAGAATCCACTGCATT 59.184 33.333 0.00 0.00 32.67 3.56
4871 5517 7.039504 ACAGAAAAATGTTAGAATCCACTGCAT 60.040 33.333 0.00 0.00 0.00 3.96
4872 5518 6.265196 ACAGAAAAATGTTAGAATCCACTGCA 59.735 34.615 0.00 0.00 0.00 4.41
4873 5519 6.681777 ACAGAAAAATGTTAGAATCCACTGC 58.318 36.000 0.00 0.00 0.00 4.40
4979 5626 2.784347 GAAAGCCTTCTGCAGGTACTT 58.216 47.619 15.13 9.85 46.07 2.24
5086 5733 2.092538 CAGATGTTCCCTCCATTCTGCT 60.093 50.000 0.00 0.00 0.00 4.24
5128 5775 5.710513 AGAAACTTACATGATTTGCTGCA 57.289 34.783 0.00 0.00 0.00 4.41
5170 5852 6.321181 GGAACCAGATAACAAATAGAATGCCA 59.679 38.462 0.00 0.00 0.00 4.92
5212 5894 2.598394 GCTGAGCCTGCCACCAAA 60.598 61.111 0.00 0.00 0.00 3.28
5320 6002 3.489738 CCTCACAAGCTTGTCAACCTTTG 60.490 47.826 28.97 15.21 39.91 2.77
5361 6043 2.618709 GCAAGCCATCCATACCACTAAC 59.381 50.000 0.00 0.00 0.00 2.34
5489 6171 6.963083 AGGCTAGAATAACACGAGTCTAAT 57.037 37.500 0.00 0.00 0.00 1.73
5493 6175 5.528320 AGACTAGGCTAGAATAACACGAGTC 59.472 44.000 27.59 12.43 0.00 3.36
5520 6202 5.783111 AGCACACATTCAAGTTTTAATCCC 58.217 37.500 0.00 0.00 0.00 3.85
5582 6265 5.248020 AGAATTCTCACTCATCAGGACTTGT 59.752 40.000 0.88 0.00 0.00 3.16
5624 6307 3.448093 TCTGAGATGACAGTCTCCAGT 57.552 47.619 1.31 0.00 43.17 4.00
5655 6338 1.123861 TCCAGCAGCTTCACCAGAGT 61.124 55.000 0.00 0.00 0.00 3.24
5683 6366 1.633852 CTCTTCAGTGCCTGCTTCGC 61.634 60.000 0.00 0.00 0.00 4.70
5711 6394 1.410737 CCGACGCGTTCATCATCGTT 61.411 55.000 15.53 0.00 35.12 3.85
5712 6395 1.872234 CCGACGCGTTCATCATCGT 60.872 57.895 15.53 0.00 37.92 3.73
5768 6451 2.028020 CCGGGTTATTATCTGCCTCCTC 60.028 54.545 0.00 0.00 0.00 3.71
5796 6479 1.003355 CCGCTTGGAGGCTCTTGAA 60.003 57.895 15.23 4.39 33.02 2.69
6181 6889 2.165167 CTCTGGAGCTGATTTTTGCCA 58.835 47.619 0.00 0.00 0.00 4.92
6219 6936 0.394762 GGTGCCATTGAGCATCTCCA 60.395 55.000 3.64 0.00 46.24 3.86
6321 7061 5.095691 ACTGCTCAAACAAACGAACTATG 57.904 39.130 0.00 0.00 0.00 2.23
6325 7065 2.851824 CCAACTGCTCAAACAAACGAAC 59.148 45.455 0.00 0.00 0.00 3.95
6501 7347 0.889186 GGTCTCAACACCAACCGCAT 60.889 55.000 0.00 0.00 36.32 4.73
6507 7353 1.150536 GGGCAGGTCTCAACACCAA 59.849 57.895 0.00 0.00 39.16 3.67
6595 7441 1.072331 GGTTGAGCAAGTCAAGGAGGA 59.928 52.381 0.00 0.00 46.18 3.71
6622 7468 1.514873 CGGAAATGCGGCAGAAAGC 60.515 57.895 9.25 0.00 44.65 3.51
6623 7469 0.097674 CTCGGAAATGCGGCAGAAAG 59.902 55.000 9.25 0.00 0.00 2.62
6624 7470 1.305219 CCTCGGAAATGCGGCAGAAA 61.305 55.000 9.25 0.00 0.00 2.52
6625 7471 1.745115 CCTCGGAAATGCGGCAGAA 60.745 57.895 9.25 0.00 0.00 3.02
6628 7474 4.408821 AGCCTCGGAAATGCGGCA 62.409 61.111 4.58 4.58 44.85 5.69
6734 7580 0.563672 AGGATAGGTGAGAGGGGGTC 59.436 60.000 0.00 0.00 0.00 4.46
6739 7585 3.431486 GCACAAAGAGGATAGGTGAGAGG 60.431 52.174 0.00 0.00 0.00 3.69
6743 7589 3.869912 GCAAGCACAAAGAGGATAGGTGA 60.870 47.826 0.00 0.00 0.00 4.02
6744 7590 2.421424 GCAAGCACAAAGAGGATAGGTG 59.579 50.000 0.00 0.00 0.00 4.00
6749 7595 2.119801 ATCGCAAGCACAAAGAGGAT 57.880 45.000 0.00 0.00 37.18 3.24
6754 7600 2.163010 AGGATCAATCGCAAGCACAAAG 59.837 45.455 0.00 0.00 37.18 2.77
6779 7625 4.222810 GGTGGCCTTTTGAAGAATATGGTT 59.777 41.667 3.32 0.00 0.00 3.67
6793 7639 2.510551 GCCTTGCTTGGTGGCCTTT 61.511 57.895 3.32 0.00 40.71 3.11
6849 7695 1.152247 TCCGCATATGAGGAGGCCT 60.152 57.895 22.76 3.86 39.12 5.19
6887 7733 1.468520 TGACTTCAGCTTTAATGGCGC 59.531 47.619 0.00 0.00 34.52 6.53
6918 7764 0.597377 CAAAGCCCGCAAGTGTTTCC 60.597 55.000 0.00 0.00 0.00 3.13
6920 7766 1.441311 CCAAAGCCCGCAAGTGTTT 59.559 52.632 0.00 0.00 0.00 2.83
6948 7794 0.682532 TGCAGTTTGTGACCAAGCCA 60.683 50.000 0.00 0.00 32.69 4.75
7011 7857 1.561542 CATAGGGAAGGTGGAGCAGTT 59.438 52.381 0.00 0.00 0.00 3.16
7014 7860 1.965414 TTCATAGGGAAGGTGGAGCA 58.035 50.000 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.