Multiple sequence alignment - TraesCS2B01G324300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G324300 chr2B 100.000 6438 0 0 1 6438 463287336 463280899 0.000000e+00 11889.0
1 TraesCS2B01G324300 chr2B 90.909 154 12 1 3283 3436 185104928 185105079 8.460000e-49 206.0
2 TraesCS2B01G324300 chr2D 94.070 2479 106 15 844 3292 391724602 391722135 0.000000e+00 3725.0
3 TraesCS2B01G324300 chr2D 92.031 2171 113 30 3421 5566 391722133 391719998 0.000000e+00 2996.0
4 TraesCS2B01G324300 chr2D 86.756 672 72 9 1 659 391725287 391724620 0.000000e+00 732.0
5 TraesCS2B01G324300 chr2D 91.029 379 20 9 6060 6428 391717860 391717486 3.470000e-137 499.0
6 TraesCS2B01G324300 chr2D 91.732 254 17 1 5950 6203 391719438 391719189 3.690000e-92 350.0
7 TraesCS2B01G324300 chr2D 90.948 232 6 7 5709 5927 391719782 391719553 1.360000e-76 298.0
8 TraesCS2B01G324300 chr2D 77.841 176 36 3 607 781 513035115 513035288 8.830000e-19 106.0
9 TraesCS2B01G324300 chr2D 100.000 28 0 0 5599 5626 391719944 391719917 1.200000e-02 52.8
10 TraesCS2B01G324300 chr2A 95.080 1931 77 10 844 2761 528663882 528661957 0.000000e+00 3024.0
11 TraesCS2B01G324300 chr2A 89.822 2250 121 45 3421 5626 528661151 528658966 0.000000e+00 2787.0
12 TraesCS2B01G324300 chr2A 92.196 551 23 5 2759 3292 528661700 528661153 0.000000e+00 761.0
13 TraesCS2B01G324300 chr2A 85.638 752 52 29 5709 6432 528658831 528658108 0.000000e+00 739.0
14 TraesCS2B01G324300 chr2A 87.230 509 53 4 4 500 528664598 528664090 2.600000e-158 569.0
15 TraesCS2B01G324300 chr2A 80.342 117 23 0 609 725 722517251 722517135 8.890000e-14 89.8
16 TraesCS2B01G324300 chrUn 96.190 420 7 1 3766 4185 477664818 477665228 0.000000e+00 678.0
17 TraesCS2B01G324300 chrUn 95.683 139 4 1 3284 3422 74542269 74542133 8.400000e-54 222.0
18 TraesCS2B01G324300 chr3D 95.683 139 3 2 3291 3429 283321251 283321116 3.020000e-53 220.0
19 TraesCS2B01G324300 chr3D 97.368 38 1 0 616 653 132163304 132163341 1.500000e-06 65.8
20 TraesCS2B01G324300 chr7B 96.241 133 3 1 3291 3423 46022824 46022954 3.910000e-52 217.0
21 TraesCS2B01G324300 chr7B 75.728 206 42 8 600 801 737712138 737711937 5.310000e-16 97.1
22 TraesCS2B01G324300 chr7A 96.269 134 2 2 3291 3423 442265881 442265750 3.910000e-52 217.0
23 TraesCS2B01G324300 chr7A 77.811 338 55 15 3 326 198648945 198648614 2.370000e-44 191.0
24 TraesCS2B01G324300 chr3A 94.326 141 3 3 3285 3423 642715808 642715945 1.820000e-50 211.0
25 TraesCS2B01G324300 chr4A 93.617 141 6 2 3291 3431 729151842 729151979 2.350000e-49 207.0
26 TraesCS2B01G324300 chr6B 91.447 152 9 3 3275 3425 67527530 67527382 8.460000e-49 206.0
27 TraesCS2B01G324300 chr6B 80.932 236 32 10 88 317 701664671 701664443 2.390000e-39 174.0
28 TraesCS2B01G324300 chr5B 91.946 149 9 2 3284 3432 640272874 640272729 8.460000e-49 206.0
29 TraesCS2B01G324300 chr5D 76.453 327 49 16 52 354 51937106 51936784 1.120000e-32 152.0
30 TraesCS2B01G324300 chr7D 90.909 55 5 0 604 658 510311046 510311100 2.490000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G324300 chr2B 463280899 463287336 6437 True 11889.000000 11889 100.000000 1 6438 1 chr2B.!!$R1 6437
1 TraesCS2B01G324300 chr2D 391717486 391725287 7801 True 1236.114286 3725 92.366571 1 6428 7 chr2D.!!$R1 6427
2 TraesCS2B01G324300 chr2A 528658108 528664598 6490 True 1576.000000 3024 89.993200 4 6432 5 chr2A.!!$R2 6428

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
723 767 0.035176 TTTTAGCGGCGGTAGTGGTT 59.965 50.0 18.75 0.00 0.00 3.67 F
2126 2182 0.037605 CCGGTGAAGACGGTAAGCTT 60.038 55.0 3.48 3.48 46.03 3.74 F
3421 3760 0.042131 TTGGGACGGAGGGAGTACAT 59.958 55.0 0.00 0.00 0.00 2.29 F
3562 3902 0.467106 TGATGGCTCCTCCTCTCTCG 60.467 60.0 0.00 0.00 35.26 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2201 2257 1.061711 GCTCTTCATTAGCAGTGCACG 59.938 52.381 19.20 7.77 39.83 5.34 R
3778 4134 0.031178 CCTGCAAACTTCCACTGTGC 59.969 55.000 1.29 0.00 35.75 4.57 R
4346 4705 0.327095 TCTAGCATGGCCACCCCTAA 60.327 55.000 8.16 0.00 0.00 2.69 R
5499 5877 0.040157 GCGCACAAGATGAAGCAACA 60.040 50.000 0.30 0.00 34.70 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 4.281435 ACAAAGGTGATGCATTCATTGTCA 59.719 37.500 0.00 0.00 32.26 3.58
46 50 3.131577 GGTGATGCATTCATTGTCATGGT 59.868 43.478 0.00 0.00 36.54 3.55
49 53 4.037089 TGATGCATTCATTGTCATGGTAGC 59.963 41.667 0.00 0.00 31.96 3.58
50 54 3.354467 TGCATTCATTGTCATGGTAGCA 58.646 40.909 0.00 0.00 32.12 3.49
59 63 1.732259 GTCATGGTAGCAGTTGTTCCG 59.268 52.381 0.00 0.00 0.00 4.30
70 74 3.428316 GCAGTTGTTCCGAACCTTTTCAA 60.428 43.478 8.80 0.00 0.00 2.69
75 79 3.954904 TGTTCCGAACCTTTTCAATGGAA 59.045 39.130 8.80 0.00 30.52 3.53
84 90 8.512138 CGAACCTTTTCAATGGAAATTAGTACT 58.488 33.333 0.00 0.00 42.31 2.73
120 126 5.009710 TGAACTTGAGTGTACATCTTCGTCT 59.990 40.000 0.00 0.00 0.00 4.18
131 137 4.899502 ACATCTTCGTCTCCATCACTTTT 58.100 39.130 0.00 0.00 0.00 2.27
185 191 7.789341 TGTTATTACTTGCTTGTTTATTGCG 57.211 32.000 0.00 0.00 0.00 4.85
287 301 7.582667 AGCCTCTAAAAGCAACTAAGAAAAA 57.417 32.000 0.00 0.00 0.00 1.94
288 302 7.652727 AGCCTCTAAAAGCAACTAAGAAAAAG 58.347 34.615 0.00 0.00 0.00 2.27
338 352 5.492895 TCTCCTCTAGTTGATATCTAGCGG 58.507 45.833 3.98 2.64 40.01 5.52
416 430 2.633488 GCTTTATCTTCGAGTTGGCCT 58.367 47.619 3.32 0.00 0.00 5.19
436 450 0.615331 TTCAGGCTTCGATGCTCCTT 59.385 50.000 21.05 4.26 0.00 3.36
452 466 0.104304 CCTTAAGGTCGTCCATCGGG 59.896 60.000 13.83 0.00 40.32 5.14
454 468 5.855729 TCCTTAAGGTCGTCCATCGGGAT 62.856 52.174 21.04 0.00 40.12 3.85
470 484 1.617947 GGATGGAGTCGGTGGAGCTT 61.618 60.000 0.00 0.00 0.00 3.74
471 485 0.250513 GATGGAGTCGGTGGAGCTTT 59.749 55.000 0.00 0.00 0.00 3.51
482 525 3.335579 GGTGGAGCTTTGACGTAGATTT 58.664 45.455 0.00 0.00 0.00 2.17
489 532 4.865365 AGCTTTGACGTAGATTTCTAGTGC 59.135 41.667 0.00 0.00 0.00 4.40
500 543 5.033522 AGATTTCTAGTGCCTTCTTAGGGT 58.966 41.667 0.00 0.00 42.25 4.34
502 545 2.467880 TCTAGTGCCTTCTTAGGGTGG 58.532 52.381 0.00 0.00 42.25 4.61
520 563 1.270947 TGGCGACGATGTTAGGGTTTT 60.271 47.619 0.00 0.00 0.00 2.43
521 564 1.395954 GGCGACGATGTTAGGGTTTTC 59.604 52.381 0.00 0.00 0.00 2.29
522 565 2.344025 GCGACGATGTTAGGGTTTTCT 58.656 47.619 0.00 0.00 0.00 2.52
523 566 2.740447 GCGACGATGTTAGGGTTTTCTT 59.260 45.455 0.00 0.00 0.00 2.52
524 567 3.424433 GCGACGATGTTAGGGTTTTCTTG 60.424 47.826 0.00 0.00 0.00 3.02
525 568 3.744426 CGACGATGTTAGGGTTTTCTTGT 59.256 43.478 0.00 0.00 0.00 3.16
527 570 3.818773 ACGATGTTAGGGTTTTCTTGTGG 59.181 43.478 0.00 0.00 0.00 4.17
528 571 3.818773 CGATGTTAGGGTTTTCTTGTGGT 59.181 43.478 0.00 0.00 0.00 4.16
529 572 4.320202 CGATGTTAGGGTTTTCTTGTGGTG 60.320 45.833 0.00 0.00 0.00 4.17
530 573 2.691011 TGTTAGGGTTTTCTTGTGGTGC 59.309 45.455 0.00 0.00 0.00 5.01
531 574 1.600023 TAGGGTTTTCTTGTGGTGCG 58.400 50.000 0.00 0.00 0.00 5.34
532 575 0.395173 AGGGTTTTCTTGTGGTGCGT 60.395 50.000 0.00 0.00 0.00 5.24
533 576 0.248866 GGGTTTTCTTGTGGTGCGTG 60.249 55.000 0.00 0.00 0.00 5.34
535 578 0.248866 GTTTTCTTGTGGTGCGTGGG 60.249 55.000 0.00 0.00 0.00 4.61
536 579 2.010582 TTTTCTTGTGGTGCGTGGGC 62.011 55.000 0.00 0.00 40.52 5.36
561 604 2.415512 GACGACAGATTTGGTGTTAGGC 59.584 50.000 0.00 0.00 0.00 3.93
574 617 0.170339 GTTAGGCGTTTCACATGGGC 59.830 55.000 0.00 0.00 0.00 5.36
576 619 0.906066 TAGGCGTTTCACATGGGCTA 59.094 50.000 0.00 0.00 36.61 3.93
577 620 0.392998 AGGCGTTTCACATGGGCTAG 60.393 55.000 0.00 0.00 33.11 3.42
588 631 4.103627 TCACATGGGCTAGATGACAATGAT 59.896 41.667 0.00 0.00 0.00 2.45
590 633 5.999600 CACATGGGCTAGATGACAATGATTA 59.000 40.000 0.00 0.00 0.00 1.75
591 634 6.148976 CACATGGGCTAGATGACAATGATTAG 59.851 42.308 0.00 0.00 0.00 1.73
598 642 8.580720 GGCTAGATGACAATGATTAGTCTCTAA 58.419 37.037 0.00 0.00 35.81 2.10
620 664 1.414919 ACGTTTGTCCTTAGAGGCACA 59.585 47.619 0.00 0.00 34.61 4.57
626 670 2.528743 CCTTAGAGGCACATGCGCG 61.529 63.158 0.00 0.00 43.26 6.86
646 690 2.352814 CGAAGACTTCCCGACTGTCATT 60.353 50.000 9.63 0.00 33.56 2.57
655 699 2.932614 CCCGACTGTCATTGACAAGATC 59.067 50.000 19.44 15.28 42.26 2.75
666 710 3.272574 TGACAAGATCAAGCCATCTCC 57.727 47.619 0.00 0.00 33.02 3.71
667 711 2.208431 GACAAGATCAAGCCATCTCCG 58.792 52.381 0.00 0.00 31.44 4.63
668 712 1.134280 ACAAGATCAAGCCATCTCCGG 60.134 52.381 0.00 0.00 31.44 5.14
685 729 4.373116 GCAGGGGAGCGACGACAA 62.373 66.667 0.00 0.00 0.00 3.18
686 730 2.125912 CAGGGGAGCGACGACAAG 60.126 66.667 0.00 0.00 0.00 3.16
687 731 3.382832 AGGGGAGCGACGACAAGG 61.383 66.667 0.00 0.00 0.00 3.61
688 732 3.379445 GGGGAGCGACGACAAGGA 61.379 66.667 0.00 0.00 0.00 3.36
689 733 2.722201 GGGGAGCGACGACAAGGAT 61.722 63.158 0.00 0.00 0.00 3.24
690 734 1.519455 GGGAGCGACGACAAGGATG 60.519 63.158 0.00 0.00 0.00 3.51
691 735 2.167861 GGAGCGACGACAAGGATGC 61.168 63.158 0.00 0.00 0.00 3.91
692 736 1.153745 GAGCGACGACAAGGATGCT 60.154 57.895 0.00 0.00 34.96 3.79
693 737 0.100682 GAGCGACGACAAGGATGCTA 59.899 55.000 0.00 0.00 31.88 3.49
694 738 0.179134 AGCGACGACAAGGATGCTAC 60.179 55.000 0.00 0.00 0.00 3.58
695 739 1.472276 GCGACGACAAGGATGCTACG 61.472 60.000 0.00 6.79 0.00 3.51
696 740 0.098200 CGACGACAAGGATGCTACGA 59.902 55.000 13.18 0.00 0.00 3.43
697 741 1.268589 CGACGACAAGGATGCTACGAT 60.269 52.381 13.18 1.30 0.00 3.73
698 742 2.120232 GACGACAAGGATGCTACGATG 58.880 52.381 13.18 0.00 0.00 3.84
699 743 1.202417 ACGACAAGGATGCTACGATGG 60.202 52.381 13.18 0.00 0.00 3.51
700 744 1.221414 GACAAGGATGCTACGATGGC 58.779 55.000 0.00 0.00 0.00 4.40
701 745 0.833287 ACAAGGATGCTACGATGGCT 59.167 50.000 0.00 0.00 0.00 4.75
702 746 1.202580 ACAAGGATGCTACGATGGCTC 60.203 52.381 0.00 0.00 0.00 4.70
712 756 1.636340 CGATGGCTCGTTTTAGCGG 59.364 57.895 0.00 0.00 43.74 5.52
713 757 1.352056 GATGGCTCGTTTTAGCGGC 59.648 57.895 0.00 0.00 43.74 6.53
714 758 2.361427 GATGGCTCGTTTTAGCGGCG 62.361 60.000 0.51 0.51 43.74 6.46
715 759 3.861263 GGCTCGTTTTAGCGGCGG 61.861 66.667 9.78 0.00 43.74 6.13
716 760 3.116531 GCTCGTTTTAGCGGCGGT 61.117 61.111 18.21 18.21 31.76 5.68
717 761 1.806758 GCTCGTTTTAGCGGCGGTA 60.807 57.895 15.64 15.64 31.76 4.02
718 762 1.749609 GCTCGTTTTAGCGGCGGTAG 61.750 60.000 18.75 9.33 31.76 3.18
719 763 0.457337 CTCGTTTTAGCGGCGGTAGT 60.457 55.000 18.75 0.00 0.00 2.73
720 764 0.733566 TCGTTTTAGCGGCGGTAGTG 60.734 55.000 18.75 10.15 0.00 2.74
721 765 1.689352 CGTTTTAGCGGCGGTAGTGG 61.689 60.000 18.75 6.54 0.00 4.00
722 766 0.671472 GTTTTAGCGGCGGTAGTGGT 60.671 55.000 18.75 0.00 0.00 4.16
723 767 0.035176 TTTTAGCGGCGGTAGTGGTT 59.965 50.000 18.75 0.00 0.00 3.67
724 768 0.671163 TTTAGCGGCGGTAGTGGTTG 60.671 55.000 18.75 0.00 0.00 3.77
725 769 1.818959 TTAGCGGCGGTAGTGGTTGT 61.819 55.000 18.75 0.00 0.00 3.32
726 770 1.818959 TAGCGGCGGTAGTGGTTGTT 61.819 55.000 15.64 0.00 0.00 2.83
727 771 2.255881 GCGGCGGTAGTGGTTGTTT 61.256 57.895 9.78 0.00 0.00 2.83
728 772 1.572447 CGGCGGTAGTGGTTGTTTG 59.428 57.895 0.00 0.00 0.00 2.93
729 773 0.881159 CGGCGGTAGTGGTTGTTTGA 60.881 55.000 0.00 0.00 0.00 2.69
730 774 1.530323 GGCGGTAGTGGTTGTTTGAT 58.470 50.000 0.00 0.00 0.00 2.57
731 775 1.199097 GGCGGTAGTGGTTGTTTGATG 59.801 52.381 0.00 0.00 0.00 3.07
732 776 1.199097 GCGGTAGTGGTTGTTTGATGG 59.801 52.381 0.00 0.00 0.00 3.51
733 777 2.500229 CGGTAGTGGTTGTTTGATGGT 58.500 47.619 0.00 0.00 0.00 3.55
734 778 2.225491 CGGTAGTGGTTGTTTGATGGTG 59.775 50.000 0.00 0.00 0.00 4.17
735 779 2.030274 GGTAGTGGTTGTTTGATGGTGC 60.030 50.000 0.00 0.00 0.00 5.01
736 780 1.774110 AGTGGTTGTTTGATGGTGCA 58.226 45.000 0.00 0.00 0.00 4.57
737 781 1.682854 AGTGGTTGTTTGATGGTGCAG 59.317 47.619 0.00 0.00 0.00 4.41
738 782 1.039068 TGGTTGTTTGATGGTGCAGG 58.961 50.000 0.00 0.00 0.00 4.85
739 783 0.318120 GGTTGTTTGATGGTGCAGGG 59.682 55.000 0.00 0.00 0.00 4.45
740 784 1.039856 GTTGTTTGATGGTGCAGGGT 58.960 50.000 0.00 0.00 0.00 4.34
741 785 1.000274 GTTGTTTGATGGTGCAGGGTC 60.000 52.381 0.00 0.00 0.00 4.46
742 786 0.184692 TGTTTGATGGTGCAGGGTCA 59.815 50.000 0.00 0.00 0.00 4.02
743 787 1.203038 TGTTTGATGGTGCAGGGTCAT 60.203 47.619 0.00 0.00 0.00 3.06
744 788 1.474077 GTTTGATGGTGCAGGGTCATC 59.526 52.381 10.52 10.52 38.13 2.92
745 789 0.392863 TTGATGGTGCAGGGTCATCG 60.393 55.000 11.89 0.00 39.89 3.84
746 790 1.264045 TGATGGTGCAGGGTCATCGA 61.264 55.000 11.89 0.00 39.89 3.59
747 791 0.107456 GATGGTGCAGGGTCATCGAT 59.893 55.000 0.00 0.00 0.00 3.59
748 792 0.179037 ATGGTGCAGGGTCATCGATG 60.179 55.000 19.61 19.61 0.00 3.84
749 793 1.221840 GGTGCAGGGTCATCGATGT 59.778 57.895 24.09 2.68 0.00 3.06
750 794 0.464036 GGTGCAGGGTCATCGATGTA 59.536 55.000 24.09 9.15 0.00 2.29
751 795 1.134521 GGTGCAGGGTCATCGATGTAA 60.135 52.381 24.09 3.86 0.00 2.41
752 796 2.485479 GGTGCAGGGTCATCGATGTAAT 60.485 50.000 24.09 7.24 0.00 1.89
753 797 3.206150 GTGCAGGGTCATCGATGTAATT 58.794 45.455 24.09 7.27 0.00 1.40
754 798 3.627577 GTGCAGGGTCATCGATGTAATTT 59.372 43.478 24.09 5.93 0.00 1.82
755 799 4.096382 GTGCAGGGTCATCGATGTAATTTT 59.904 41.667 24.09 4.92 0.00 1.82
756 800 4.704540 TGCAGGGTCATCGATGTAATTTTT 59.295 37.500 24.09 3.45 0.00 1.94
757 801 5.036737 GCAGGGTCATCGATGTAATTTTTG 58.963 41.667 24.09 14.72 0.00 2.44
758 802 5.393027 GCAGGGTCATCGATGTAATTTTTGT 60.393 40.000 24.09 0.00 0.00 2.83
759 803 6.258160 CAGGGTCATCGATGTAATTTTTGTC 58.742 40.000 24.09 4.84 0.00 3.18
760 804 5.943416 AGGGTCATCGATGTAATTTTTGTCA 59.057 36.000 24.09 0.00 0.00 3.58
761 805 6.603201 AGGGTCATCGATGTAATTTTTGTCAT 59.397 34.615 24.09 0.00 0.00 3.06
762 806 6.692681 GGGTCATCGATGTAATTTTTGTCATG 59.307 38.462 24.09 0.00 0.00 3.07
763 807 7.250569 GGTCATCGATGTAATTTTTGTCATGT 58.749 34.615 24.09 0.00 0.00 3.21
764 808 7.754924 GGTCATCGATGTAATTTTTGTCATGTT 59.245 33.333 24.09 0.00 0.00 2.71
765 809 9.128107 GTCATCGATGTAATTTTTGTCATGTTT 57.872 29.630 24.09 0.00 0.00 2.83
766 810 9.689976 TCATCGATGTAATTTTTGTCATGTTTT 57.310 25.926 24.09 0.00 0.00 2.43
767 811 9.730146 CATCGATGTAATTTTTGTCATGTTTTG 57.270 29.630 17.50 0.00 0.00 2.44
768 812 9.689976 ATCGATGTAATTTTTGTCATGTTTTGA 57.310 25.926 0.00 0.00 0.00 2.69
769 813 9.179552 TCGATGTAATTTTTGTCATGTTTTGAG 57.820 29.630 0.00 0.00 34.17 3.02
770 814 8.427012 CGATGTAATTTTTGTCATGTTTTGAGG 58.573 33.333 0.00 0.00 34.17 3.86
771 815 9.260002 GATGTAATTTTTGTCATGTTTTGAGGT 57.740 29.630 0.00 0.00 34.17 3.85
772 816 8.417780 TGTAATTTTTGTCATGTTTTGAGGTG 57.582 30.769 0.00 0.00 34.17 4.00
773 817 5.989551 ATTTTTGTCATGTTTTGAGGTGC 57.010 34.783 0.00 0.00 34.17 5.01
774 818 4.734398 TTTTGTCATGTTTTGAGGTGCT 57.266 36.364 0.00 0.00 34.17 4.40
775 819 4.734398 TTTGTCATGTTTTGAGGTGCTT 57.266 36.364 0.00 0.00 34.17 3.91
776 820 4.734398 TTGTCATGTTTTGAGGTGCTTT 57.266 36.364 0.00 0.00 34.17 3.51
777 821 4.044336 TGTCATGTTTTGAGGTGCTTTG 57.956 40.909 0.00 0.00 34.17 2.77
778 822 3.446873 TGTCATGTTTTGAGGTGCTTTGT 59.553 39.130 0.00 0.00 34.17 2.83
779 823 4.642437 TGTCATGTTTTGAGGTGCTTTGTA 59.358 37.500 0.00 0.00 34.17 2.41
780 824 4.976116 GTCATGTTTTGAGGTGCTTTGTAC 59.024 41.667 0.00 0.00 34.17 2.90
781 825 4.037446 TCATGTTTTGAGGTGCTTTGTACC 59.963 41.667 0.00 0.00 38.59 3.34
789 833 4.699925 AGGTGCTTTGTACCTCTTACAA 57.300 40.909 1.54 0.00 45.10 2.41
897 946 0.254747 TTCAATCGAAGGGGCGGATT 59.745 50.000 0.00 0.00 0.00 3.01
898 947 1.124780 TCAATCGAAGGGGCGGATTA 58.875 50.000 0.00 0.00 0.00 1.75
907 956 1.278127 AGGGGCGGATTATAACGATGG 59.722 52.381 0.00 0.00 0.00 3.51
913 962 3.810941 GCGGATTATAACGATGGAACCAA 59.189 43.478 0.00 0.00 0.00 3.67
939 988 6.486657 AGACGATTTTCAAAATCCTGTCAGAA 59.513 34.615 22.59 0.00 0.00 3.02
954 1003 4.389374 TGTCAGAAGAACAAGGTGGATTC 58.611 43.478 0.00 0.00 0.00 2.52
963 1012 9.196552 GAAGAACAAGGTGGATTCAAAATAAAG 57.803 33.333 0.00 0.00 0.00 1.85
996 1046 3.634448 CCTAGATCTTGTCACATCCGACT 59.366 47.826 0.00 0.00 36.82 4.18
1024 1075 2.055042 CCCCCTCCTCTGTCGTCTG 61.055 68.421 0.00 0.00 0.00 3.51
1179 1232 1.609501 CTCTCCCCTTCACGGTCCA 60.610 63.158 0.00 0.00 0.00 4.02
1546 1602 1.679898 CAGGGACTCCAAGGTGACC 59.320 63.158 0.00 0.00 34.60 4.02
1687 1743 3.968649 TGCTTGATTTGCTTCACTTGTC 58.031 40.909 0.00 0.00 0.00 3.18
1725 1781 3.763897 GGCAATCTGGTTCCATGTTAAGT 59.236 43.478 0.00 0.00 0.00 2.24
1770 1826 9.868277 ATGCTAGTTTGAAGTATATATCTCTGC 57.132 33.333 0.00 0.00 0.00 4.26
1788 1844 7.423844 TCTCTGCAAAATCCTTCTATAGTCA 57.576 36.000 0.00 0.00 0.00 3.41
1794 1850 8.514594 TGCAAAATCCTTCTATAGTCAAGTTTG 58.485 33.333 0.00 7.43 0.00 2.93
1890 1946 6.832520 TCATGTATTGTAACAATGTGCCTT 57.167 33.333 0.00 0.00 32.02 4.35
2019 2075 7.888021 TCAGTTTTTCATATGGGTGATTACACT 59.112 33.333 2.13 0.00 45.32 3.55
2060 2116 4.473444 TCTGATTTCAGCCTTCTTTGGTT 58.527 39.130 2.60 0.00 43.46 3.67
2061 2117 4.895297 TCTGATTTCAGCCTTCTTTGGTTT 59.105 37.500 2.60 0.00 43.46 3.27
2070 2126 5.123979 CAGCCTTCTTTGGTTTATCCTGTAC 59.876 44.000 0.00 0.00 37.07 2.90
2108 2164 0.538746 ATTGGTTTGGACGTCCCACC 60.539 55.000 32.52 32.52 46.62 4.61
2126 2182 0.037605 CCGGTGAAGACGGTAAGCTT 60.038 55.000 3.48 3.48 46.03 3.74
2201 2257 6.879458 TCTCCAGGTTTTTCTGAGTATTTAGC 59.121 38.462 0.00 0.00 36.93 3.09
2205 2261 5.086727 GGTTTTTCTGAGTATTTAGCGTGC 58.913 41.667 0.00 0.00 0.00 5.34
2256 2312 1.199327 TGTGTCTAGTCTGCACGTAGC 59.801 52.381 0.00 0.00 45.96 3.58
2330 2386 3.855255 TGATGAGACCACAAGTTTGGA 57.145 42.857 10.03 0.00 39.24 3.53
2404 2461 4.849518 TCGGAAACATGGTTTCCATATCA 58.150 39.130 29.79 12.66 43.15 2.15
2434 2491 4.351407 TGTGTTGGTATGACCTTAAGGGAA 59.649 41.667 25.31 13.20 39.58 3.97
2436 2493 5.771165 GTGTTGGTATGACCTTAAGGGAAAA 59.229 40.000 25.31 8.17 39.58 2.29
2440 2497 7.758820 TGGTATGACCTTAAGGGAAAAGATA 57.241 36.000 25.31 8.85 39.58 1.98
2475 2533 4.258702 TCAACAGTTCCTTAGCTGTCTC 57.741 45.455 0.00 0.00 44.21 3.36
2511 2569 7.094506 TGTGAAATGATCCTCTTCACTTCATTG 60.095 37.037 22.17 0.00 41.97 2.82
2587 2650 9.512435 GGTCTTATGTGATGATGATTTTTCTTG 57.488 33.333 0.00 0.00 0.00 3.02
2687 2750 3.166657 GCGATGTTCAAGATCAGCAAAC 58.833 45.455 0.00 0.00 0.00 2.93
2852 3177 7.563724 TTATTGTATACCTGGATACCCCTTC 57.436 40.000 0.00 0.00 32.24 3.46
2878 3203 1.341209 CTGAACCCCCAAAGCAAGAAC 59.659 52.381 0.00 0.00 0.00 3.01
3000 3339 1.961277 CTTGCGTGGGAGGTGTGAC 60.961 63.158 0.00 0.00 0.00 3.67
3027 3366 8.297426 CGTATATCATGTAGGTACACTCATGTT 58.703 37.037 16.84 13.28 40.48 2.71
3109 3448 7.331026 TCCTGAGATGGTAAAGTGTTTCTATG 58.669 38.462 0.00 0.00 0.00 2.23
3158 3497 4.814234 ACGCTCTGTTGACAAGAAATTACA 59.186 37.500 0.00 0.00 0.00 2.41
3174 3513 6.728632 AGAAATTACACTTCCCTTCTCTCTCT 59.271 38.462 0.00 0.00 0.00 3.10
3175 3514 6.538945 AATTACACTTCCCTTCTCTCTCTC 57.461 41.667 0.00 0.00 0.00 3.20
3239 3578 4.082125 GTCAACAGATCCTTTGTTCCCAT 58.918 43.478 4.31 0.00 36.67 4.00
3245 3584 5.420104 ACAGATCCTTTGTTCCCATTTCATC 59.580 40.000 0.00 0.00 0.00 2.92
3297 3636 8.478775 AAGAACTGCTTAAAATTTTACTCCCT 57.521 30.769 10.18 0.26 34.31 4.20
3298 3637 8.112016 AGAACTGCTTAAAATTTTACTCCCTC 57.888 34.615 10.18 4.18 0.00 4.30
3299 3638 6.835819 ACTGCTTAAAATTTTACTCCCTCC 57.164 37.500 10.18 0.00 0.00 4.30
3300 3639 5.414765 ACTGCTTAAAATTTTACTCCCTCCG 59.585 40.000 10.18 0.00 0.00 4.63
3301 3640 5.318630 TGCTTAAAATTTTACTCCCTCCGT 58.681 37.500 10.18 0.00 0.00 4.69
3302 3641 5.413523 TGCTTAAAATTTTACTCCCTCCGTC 59.586 40.000 10.18 0.00 0.00 4.79
3303 3642 5.163683 GCTTAAAATTTTACTCCCTCCGTCC 60.164 44.000 10.18 0.00 0.00 4.79
3304 3643 3.361281 AAATTTTACTCCCTCCGTCCC 57.639 47.619 0.00 0.00 0.00 4.46
3305 3644 1.961133 ATTTTACTCCCTCCGTCCCA 58.039 50.000 0.00 0.00 0.00 4.37
3306 3645 1.732117 TTTTACTCCCTCCGTCCCAA 58.268 50.000 0.00 0.00 0.00 4.12
3307 3646 1.732117 TTTACTCCCTCCGTCCCAAA 58.268 50.000 0.00 0.00 0.00 3.28
3308 3647 1.732117 TTACTCCCTCCGTCCCAAAA 58.268 50.000 0.00 0.00 0.00 2.44
3309 3648 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
3310 3649 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
3311 3650 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
3312 3651 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
3313 3652 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
3314 3653 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
3315 3654 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
3316 3655 2.228822 CCTCCGTCCCAAAATTCTTGTG 59.771 50.000 0.00 0.00 0.00 3.33
3317 3656 2.884639 CTCCGTCCCAAAATTCTTGTGT 59.115 45.455 0.00 0.00 0.00 3.72
3318 3657 2.882137 TCCGTCCCAAAATTCTTGTGTC 59.118 45.455 0.00 0.00 0.00 3.67
3319 3658 2.884639 CCGTCCCAAAATTCTTGTGTCT 59.115 45.455 0.00 0.00 0.00 3.41
3320 3659 3.317993 CCGTCCCAAAATTCTTGTGTCTT 59.682 43.478 0.00 0.00 0.00 3.01
3321 3660 4.517453 CCGTCCCAAAATTCTTGTGTCTTA 59.483 41.667 0.00 0.00 0.00 2.10
3322 3661 5.009210 CCGTCCCAAAATTCTTGTGTCTTAA 59.991 40.000 0.00 0.00 0.00 1.85
3323 3662 6.460399 CCGTCCCAAAATTCTTGTGTCTTAAA 60.460 38.462 0.00 0.00 0.00 1.52
3324 3663 7.145323 CGTCCCAAAATTCTTGTGTCTTAAAT 58.855 34.615 0.00 0.00 0.00 1.40
3325 3664 7.651704 CGTCCCAAAATTCTTGTGTCTTAAATT 59.348 33.333 0.00 0.00 0.00 1.82
3326 3665 9.325198 GTCCCAAAATTCTTGTGTCTTAAATTT 57.675 29.630 0.00 0.00 32.47 1.82
3327 3666 9.323985 TCCCAAAATTCTTGTGTCTTAAATTTG 57.676 29.630 0.00 0.00 31.76 2.32
3328 3667 9.108284 CCCAAAATTCTTGTGTCTTAAATTTGT 57.892 29.630 0.00 0.00 31.76 2.83
3338 3677 8.697846 TGTGTCTTAAATTTGTCTAGATACGG 57.302 34.615 0.00 0.00 31.91 4.02
3339 3678 8.525316 TGTGTCTTAAATTTGTCTAGATACGGA 58.475 33.333 0.00 0.00 31.91 4.69
3340 3679 9.530633 GTGTCTTAAATTTGTCTAGATACGGAT 57.469 33.333 0.00 0.00 0.00 4.18
3341 3680 9.529325 TGTCTTAAATTTGTCTAGATACGGATG 57.471 33.333 0.00 0.00 0.00 3.51
3342 3681 9.530633 GTCTTAAATTTGTCTAGATACGGATGT 57.469 33.333 0.00 0.00 0.00 3.06
3360 3699 8.792831 ACGGATGTATCTAATACTAAAACGTG 57.207 34.615 0.00 0.00 36.70 4.49
3361 3700 8.623903 ACGGATGTATCTAATACTAAAACGTGA 58.376 33.333 0.00 0.00 36.70 4.35
3362 3701 9.622004 CGGATGTATCTAATACTAAAACGTGAT 57.378 33.333 0.00 0.00 36.70 3.06
3374 3713 7.316544 ACTAAAACGTGATTTGATACATCCC 57.683 36.000 0.00 0.00 0.00 3.85
3375 3714 7.110155 ACTAAAACGTGATTTGATACATCCCT 58.890 34.615 0.00 0.00 0.00 4.20
3376 3715 8.262227 ACTAAAACGTGATTTGATACATCCCTA 58.738 33.333 0.00 0.00 0.00 3.53
3377 3716 9.273016 CTAAAACGTGATTTGATACATCCCTAT 57.727 33.333 0.00 0.00 0.00 2.57
3378 3717 8.519799 AAAACGTGATTTGATACATCCCTATT 57.480 30.769 0.00 0.00 0.00 1.73
3379 3718 8.519799 AAACGTGATTTGATACATCCCTATTT 57.480 30.769 0.00 0.00 0.00 1.40
3380 3719 9.621629 AAACGTGATTTGATACATCCCTATTTA 57.378 29.630 0.00 0.00 0.00 1.40
3381 3720 8.833231 ACGTGATTTGATACATCCCTATTTAG 57.167 34.615 0.00 0.00 0.00 1.85
3382 3721 8.647796 ACGTGATTTGATACATCCCTATTTAGA 58.352 33.333 0.00 0.00 0.00 2.10
3383 3722 8.926710 CGTGATTTGATACATCCCTATTTAGAC 58.073 37.037 0.00 0.00 0.00 2.59
3384 3723 9.778741 GTGATTTGATACATCCCTATTTAGACA 57.221 33.333 0.00 0.00 0.00 3.41
3406 3745 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
3407 3746 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
3408 3747 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
3409 3748 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
3410 3749 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
3411 3750 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
3412 3751 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
3413 3752 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
3414 3753 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
3415 3754 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
3416 3755 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
3417 3756 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
3418 3757 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3419 3758 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
3420 3759 0.178926 TTTGGGACGGAGGGAGTACA 60.179 55.000 0.00 0.00 0.00 2.90
3421 3760 0.042131 TTGGGACGGAGGGAGTACAT 59.958 55.000 0.00 0.00 0.00 2.29
3422 3761 0.042131 TGGGACGGAGGGAGTACATT 59.958 55.000 0.00 0.00 0.00 2.71
3423 3762 1.288633 TGGGACGGAGGGAGTACATTA 59.711 52.381 0.00 0.00 0.00 1.90
3424 3763 2.090943 TGGGACGGAGGGAGTACATTAT 60.091 50.000 0.00 0.00 0.00 1.28
3428 3768 4.220163 GGACGGAGGGAGTACATTATTAGG 59.780 50.000 0.00 0.00 0.00 2.69
3432 3772 4.557205 GAGGGAGTACATTATTAGGTGCG 58.443 47.826 0.00 0.00 0.00 5.34
3440 3780 8.726870 AGTACATTATTAGGTGCGTTTTGTAT 57.273 30.769 0.00 0.00 0.00 2.29
3451 3791 8.682128 AGGTGCGTTTTGTATTATATGTTTTG 57.318 30.769 0.00 0.00 0.00 2.44
3562 3902 0.467106 TGATGGCTCCTCCTCTCTCG 60.467 60.000 0.00 0.00 35.26 4.04
3596 3936 6.493458 AGGTTTTGCTGGTAATTAACACATCT 59.507 34.615 0.00 0.00 0.00 2.90
3625 3965 5.540911 ACCATTCACTATTGCTTTTTGGTG 58.459 37.500 0.00 0.00 33.86 4.17
3661 4001 4.423625 AACACTAGGTTTGCTCTCTTGT 57.576 40.909 0.00 0.00 35.82 3.16
3662 4002 4.423625 ACACTAGGTTTGCTCTCTTGTT 57.576 40.909 0.00 0.00 0.00 2.83
3665 4005 6.166982 ACACTAGGTTTGCTCTCTTGTTATC 58.833 40.000 0.00 0.00 0.00 1.75
4125 4481 9.480861 AGACTAGTAATATATGGCTGCTGAATA 57.519 33.333 0.00 0.00 0.00 1.75
4126 4482 9.522804 GACTAGTAATATATGGCTGCTGAATAC 57.477 37.037 0.00 0.00 0.00 1.89
4127 4483 9.035890 ACTAGTAATATATGGCTGCTGAATACA 57.964 33.333 0.00 0.00 0.00 2.29
4158 4514 5.369699 ACATAACACAAGAGGCCATATACCT 59.630 40.000 5.01 0.00 41.41 3.08
4159 4515 4.862641 AACACAAGAGGCCATATACCTT 57.137 40.909 5.01 0.00 37.77 3.50
4162 4518 5.216622 ACACAAGAGGCCATATACCTTAGA 58.783 41.667 5.01 0.00 37.77 2.10
4240 4596 3.853355 ATAGCTGGAGCAATGCTAACT 57.147 42.857 8.12 5.89 45.16 2.24
4311 4668 7.558161 TGAATAATCAAATGTGTGCTAGAGG 57.442 36.000 0.00 0.00 30.99 3.69
4331 4690 3.451902 AGGGGCACCATTTGATACATTTG 59.548 43.478 8.31 0.00 44.85 2.32
4346 4705 8.750515 TGATACATTTGTATGTCCATGTGAAT 57.249 30.769 7.91 0.00 43.81 2.57
4432 4792 5.063180 TCCATTTTTGCTAAGCTGACATG 57.937 39.130 0.00 0.00 0.00 3.21
4446 4806 3.438087 GCTGACATGTGCTGTTCTAATGT 59.562 43.478 1.15 0.00 38.54 2.71
4456 4827 7.984391 TGTGCTGTTCTAATGTTGTAATATGG 58.016 34.615 0.00 0.00 0.00 2.74
4483 4854 5.982890 ATTTTGGTCGTCTTTGATTCCAT 57.017 34.783 0.00 0.00 0.00 3.41
4533 4904 5.664457 TCAACTATGTTCTGTAGCCAGATG 58.336 41.667 0.00 0.00 46.80 2.90
4574 4945 5.883685 TCTCTTAGATGCATGAACTCCAT 57.116 39.130 2.46 0.00 35.44 3.41
4614 4985 8.890410 ACCTGTTAGATAGGTTTAGTGTTCTA 57.110 34.615 0.00 0.00 46.13 2.10
4738 5109 2.767394 TGCATTTCCCCTCCATTCAATG 59.233 45.455 0.00 0.00 0.00 2.82
4820 5192 6.940298 AGTGTTACTATGGTTGTGCTTGTAAT 59.060 34.615 0.00 0.00 0.00 1.89
4821 5193 8.098286 AGTGTTACTATGGTTGTGCTTGTAATA 58.902 33.333 0.00 0.00 0.00 0.98
4822 5194 8.388103 GTGTTACTATGGTTGTGCTTGTAATAG 58.612 37.037 0.00 0.00 0.00 1.73
4874 5246 0.615331 GATCTTCCAGTGGTCCAGCA 59.385 55.000 9.54 0.00 0.00 4.41
4876 5248 0.615331 TCTTCCAGTGGTCCAGCATC 59.385 55.000 9.54 0.00 0.00 3.91
4877 5249 0.393537 CTTCCAGTGGTCCAGCATCC 60.394 60.000 9.54 0.00 0.00 3.51
4890 5262 6.101150 TGGTCCAGCATCCTAATAAATAGTGT 59.899 38.462 0.00 0.00 0.00 3.55
5017 5389 7.937394 ACTATACTACATAAAACTCCATTGGCC 59.063 37.037 0.00 0.00 0.00 5.36
5030 5402 3.586543 TGGCCAATGGGTCAGTCA 58.413 55.556 0.61 0.00 45.98 3.41
5031 5403 1.379916 TGGCCAATGGGTCAGTCAG 59.620 57.895 0.61 0.00 45.98 3.51
5033 5405 0.962356 GGCCAATGGGTCAGTCAGTG 60.962 60.000 0.00 0.00 39.19 3.66
5034 5406 0.250901 GCCAATGGGTCAGTCAGTGT 60.251 55.000 0.00 0.00 36.17 3.55
5035 5407 1.527034 CCAATGGGTCAGTCAGTGTG 58.473 55.000 0.00 0.00 0.00 3.82
5037 5409 2.038426 CCAATGGGTCAGTCAGTGTGTA 59.962 50.000 0.00 0.00 0.00 2.90
5038 5410 3.329386 CAATGGGTCAGTCAGTGTGTAG 58.671 50.000 0.00 0.00 0.00 2.74
5039 5411 0.679505 TGGGTCAGTCAGTGTGTAGC 59.320 55.000 0.00 0.00 0.00 3.58
5050 5422 4.023707 GTCAGTGTGTAGCTTGCTGATTTT 60.024 41.667 5.26 0.00 38.28 1.82
5060 5432 6.284891 AGCTTGCTGATTTTGCCTTTATTA 57.715 33.333 0.00 0.00 0.00 0.98
5066 5438 8.309163 TGCTGATTTTGCCTTTATTAAACAAG 57.691 30.769 0.00 0.00 0.00 3.16
5075 5447 7.441017 TGCCTTTATTAAACAAGTTGAATGCT 58.559 30.769 10.54 0.00 0.00 3.79
5089 5461 7.317842 AGTTGAATGCTCAGAGTTATCATTG 57.682 36.000 5.90 0.00 31.69 2.82
5154 5526 4.779993 ACTCCTTGTTTCCTCAGTCTTT 57.220 40.909 0.00 0.00 0.00 2.52
5156 5528 4.164221 ACTCCTTGTTTCCTCAGTCTTTCA 59.836 41.667 0.00 0.00 0.00 2.69
5161 5533 2.489722 GTTTCCTCAGTCTTTCATGCCC 59.510 50.000 0.00 0.00 0.00 5.36
5206 5578 1.876322 CTGCTGCTAATCCTGCTACC 58.124 55.000 0.00 0.00 0.00 3.18
5236 5608 2.743538 CTGCTGCGCTGGCTGTTA 60.744 61.111 21.88 5.75 39.98 2.41
5239 5611 2.108514 GCTGCGCTGGCTGTTATGA 61.109 57.895 16.47 0.00 39.98 2.15
5261 5636 4.607293 TGCTAAGGTGCCATAGAGTATG 57.393 45.455 4.83 0.00 35.94 2.39
5262 5637 4.223144 TGCTAAGGTGCCATAGAGTATGA 58.777 43.478 4.83 0.00 38.45 2.15
5263 5638 4.281941 TGCTAAGGTGCCATAGAGTATGAG 59.718 45.833 4.83 0.00 38.45 2.90
5264 5639 4.524714 GCTAAGGTGCCATAGAGTATGAGA 59.475 45.833 4.83 0.00 38.45 3.27
5265 5640 4.946478 AAGGTGCCATAGAGTATGAGAC 57.054 45.455 0.00 0.00 38.45 3.36
5267 5642 2.029828 GGTGCCATAGAGTATGAGACCG 60.030 54.545 0.00 0.00 38.45 4.79
5268 5643 2.623889 GTGCCATAGAGTATGAGACCGT 59.376 50.000 0.00 0.00 38.45 4.83
5269 5644 2.885266 TGCCATAGAGTATGAGACCGTC 59.115 50.000 0.00 0.00 38.45 4.79
5270 5645 2.095668 GCCATAGAGTATGAGACCGTCG 60.096 54.545 0.00 0.00 38.45 5.12
5271 5646 2.095668 CCATAGAGTATGAGACCGTCGC 60.096 54.545 0.00 0.00 38.45 5.19
5292 5669 3.529533 CAAGTGCTATGTCTCTGGAAGG 58.470 50.000 0.00 0.00 0.00 3.46
5301 5678 6.016276 GCTATGTCTCTGGAAGGAAAACAAAA 60.016 38.462 0.00 0.00 0.00 2.44
5353 5730 2.487934 TGCTTGAACTTGACTCAGCTC 58.512 47.619 0.00 0.00 0.00 4.09
5356 5733 1.328279 TGAACTTGACTCAGCTCCGA 58.672 50.000 0.00 0.00 0.00 4.55
5358 5735 2.288457 TGAACTTGACTCAGCTCCGAAG 60.288 50.000 0.00 0.00 0.00 3.79
5362 5739 2.201921 TGACTCAGCTCCGAAGTAGT 57.798 50.000 0.00 0.00 0.00 2.73
5380 5757 6.426646 AGTAGTCTTCTTCACAATGGACTT 57.573 37.500 0.00 0.00 35.90 3.01
5389 5766 2.063266 CACAATGGACTTTGCATGTGC 58.937 47.619 0.31 0.00 42.50 4.57
5394 5771 0.664166 GGACTTTGCATGTGCGGTTG 60.664 55.000 0.01 0.00 45.83 3.77
5438 5816 3.496884 TGTTTTAGACTTTTCGCTGCGAT 59.503 39.130 26.51 10.92 35.23 4.58
5448 5826 1.081242 CGCTGCGATTTGCTTTGGT 60.081 52.632 18.66 0.00 46.63 3.67
5480 5858 9.023967 GCATAATTGAATCTTGTTTACCATCAC 57.976 33.333 0.00 0.00 0.00 3.06
5489 5867 6.597562 TCTTGTTTACCATCACTTGTAACCT 58.402 36.000 0.00 0.00 0.00 3.50
5492 5870 7.648039 TGTTTACCATCACTTGTAACCTTTT 57.352 32.000 0.00 0.00 0.00 2.27
5497 5875 6.123651 ACCATCACTTGTAACCTTTTACACA 58.876 36.000 0.00 0.00 45.90 3.72
5499 5877 7.286775 ACCATCACTTGTAACCTTTTACACATT 59.713 33.333 0.00 0.00 45.90 2.71
5504 5882 6.754675 ACTTGTAACCTTTTACACATTGTTGC 59.245 34.615 0.00 0.00 45.90 4.17
5513 5891 7.095940 CCTTTTACACATTGTTGCTTCATCTTG 60.096 37.037 0.00 0.00 0.00 3.02
5522 5900 3.386867 CTTCATCTTGTGCGCCGCC 62.387 63.158 6.63 0.00 0.00 6.13
5524 5902 3.511595 CATCTTGTGCGCCGCCAT 61.512 61.111 6.63 0.00 0.00 4.40
5525 5903 3.204827 ATCTTGTGCGCCGCCATC 61.205 61.111 6.63 0.00 0.00 3.51
5526 5904 3.687321 ATCTTGTGCGCCGCCATCT 62.687 57.895 6.63 0.00 0.00 2.90
5527 5905 2.310327 ATCTTGTGCGCCGCCATCTA 62.310 55.000 6.63 0.00 0.00 1.98
5528 5906 2.511373 TTGTGCGCCGCCATCTAG 60.511 61.111 6.63 0.00 0.00 2.43
5541 5919 5.360591 CCGCCATCTAGTCTAGTTCAAATT 58.639 41.667 6.77 0.00 0.00 1.82
5560 5938 7.516452 TCAAATTTGAACCATCCTTGGATTTT 58.484 30.769 18.45 0.00 38.66 1.82
5580 5967 4.799564 TTCTGGTGCCAAAAATACATCC 57.200 40.909 0.00 0.00 0.00 3.51
5596 5983 1.297364 TCCGGACGGGATTCAAACC 59.703 57.895 11.27 0.00 40.94 3.27
5597 5984 1.196104 TCCGGACGGGATTCAAACCT 61.196 55.000 11.27 0.00 40.94 3.50
5633 6040 0.040058 TGAATGGAGGCTGCCAACAT 59.960 50.000 22.65 20.27 42.16 2.71
5644 6051 2.101783 CTGCCAACATAGCCCAATGAA 58.898 47.619 0.00 0.00 0.00 2.57
5646 6053 2.902486 TGCCAACATAGCCCAATGAAAA 59.098 40.909 0.00 0.00 0.00 2.29
5648 6055 4.019501 TGCCAACATAGCCCAATGAAAATT 60.020 37.500 0.00 0.00 0.00 1.82
5649 6056 4.333372 GCCAACATAGCCCAATGAAAATTG 59.667 41.667 0.00 0.00 0.00 2.32
5651 6058 5.939296 CCAACATAGCCCAATGAAAATTGTT 59.061 36.000 0.00 0.00 0.00 2.83
5653 6060 6.357579 ACATAGCCCAATGAAAATTGTTGA 57.642 33.333 0.00 0.00 0.00 3.18
5654 6061 6.949715 ACATAGCCCAATGAAAATTGTTGAT 58.050 32.000 0.00 0.00 0.00 2.57
5655 6062 7.396418 ACATAGCCCAATGAAAATTGTTGATT 58.604 30.769 0.00 0.00 0.00 2.57
5656 6063 7.884354 ACATAGCCCAATGAAAATTGTTGATTT 59.116 29.630 0.00 0.00 39.63 2.17
5658 6065 7.671495 AGCCCAATGAAAATTGTTGATTTAC 57.329 32.000 0.00 0.00 36.96 2.01
5659 6066 6.654582 AGCCCAATGAAAATTGTTGATTTACC 59.345 34.615 0.00 0.00 36.96 2.85
5660 6067 6.402011 GCCCAATGAAAATTGTTGATTTACCG 60.402 38.462 0.00 0.00 36.96 4.02
5661 6068 6.648725 CCCAATGAAAATTGTTGATTTACCGT 59.351 34.615 0.00 0.00 36.96 4.83
5662 6069 7.148656 CCCAATGAAAATTGTTGATTTACCGTC 60.149 37.037 0.00 0.00 36.96 4.79
5663 6070 7.410300 CCAATGAAAATTGTTGATTTACCGTCG 60.410 37.037 0.00 0.00 36.96 5.12
5664 6071 4.912766 TGAAAATTGTTGATTTACCGTCGC 59.087 37.500 0.00 0.00 36.96 5.19
5665 6072 2.798834 ATTGTTGATTTACCGTCGCG 57.201 45.000 0.00 0.00 0.00 5.87
5666 6073 3.668491 AAATTGTTGATTTACCGTCGCGG 60.668 43.478 6.13 15.25 40.57 6.46
5679 6086 3.777925 CGCGGCCGTGACTTCTTG 61.778 66.667 34.65 4.52 0.00 3.02
5681 6123 1.959226 GCGGCCGTGACTTCTTGAA 60.959 57.895 28.70 0.00 0.00 2.69
5687 6129 1.937899 CCGTGACTTCTTGAACCGTTT 59.062 47.619 0.00 0.00 0.00 3.60
5689 6131 2.350498 CGTGACTTCTTGAACCGTTTGT 59.650 45.455 0.00 0.00 0.00 2.83
5703 6145 2.899044 TTTGTGGCCGTAGCGTTGC 61.899 57.895 0.00 0.00 41.24 4.17
5750 6201 4.149571 GCATCAGTCTGTCGCTTGTATATG 59.850 45.833 0.00 0.00 0.00 1.78
5820 6283 4.115516 CGTCATTGTGAGGACCAGATAAG 58.884 47.826 0.00 0.00 34.44 1.73
5839 6302 2.818169 TTGTCTGGTTCGCCTGGCT 61.818 57.895 17.92 0.00 40.86 4.75
5840 6303 2.032681 GTCTGGTTCGCCTGGCTT 59.967 61.111 17.92 0.00 37.76 4.35
5852 6315 1.884235 CCTGGCTTTTTGTCTCGTCT 58.116 50.000 0.00 0.00 0.00 4.18
5880 6343 2.537401 CCGTTTTATCGGTCCAGTCTC 58.463 52.381 0.00 0.00 44.77 3.36
5881 6344 2.094390 CCGTTTTATCGGTCCAGTCTCA 60.094 50.000 0.00 0.00 44.77 3.27
5927 6391 3.036075 TCAGGCATCGACATCATCATC 57.964 47.619 0.00 0.00 0.00 2.92
5929 6393 3.007614 TCAGGCATCGACATCATCATCAT 59.992 43.478 0.00 0.00 0.00 2.45
5930 6394 3.371285 CAGGCATCGACATCATCATCATC 59.629 47.826 0.00 0.00 0.00 2.92
5933 6397 4.034163 GGCATCGACATCATCATCATCATC 59.966 45.833 0.00 0.00 0.00 2.92
5934 6398 4.259850 GCATCGACATCATCATCATCATCG 60.260 45.833 0.00 0.00 0.00 3.84
5936 6400 4.479619 TCGACATCATCATCATCATCGAC 58.520 43.478 0.00 0.00 32.82 4.20
5938 6402 4.863131 CGACATCATCATCATCATCGACAT 59.137 41.667 0.00 0.00 0.00 3.06
5939 6403 5.004535 CGACATCATCATCATCATCGACATC 59.995 44.000 0.00 0.00 0.00 3.06
5940 6404 5.790593 ACATCATCATCATCATCGACATCA 58.209 37.500 0.00 0.00 0.00 3.07
5941 6405 6.407202 ACATCATCATCATCATCGACATCAT 58.593 36.000 0.00 0.00 0.00 2.45
5942 6406 6.535508 ACATCATCATCATCATCGACATCATC 59.464 38.462 0.00 0.00 0.00 2.92
5943 6407 6.032956 TCATCATCATCATCGACATCATCA 57.967 37.500 0.00 0.00 0.00 3.07
5944 6408 6.640518 TCATCATCATCATCGACATCATCAT 58.359 36.000 0.00 0.00 0.00 2.45
5945 6409 7.778083 TCATCATCATCATCGACATCATCATA 58.222 34.615 0.00 0.00 0.00 2.15
5946 6410 8.421784 TCATCATCATCATCGACATCATCATAT 58.578 33.333 0.00 0.00 0.00 1.78
5947 6411 9.692749 CATCATCATCATCGACATCATCATATA 57.307 33.333 0.00 0.00 0.00 0.86
6000 6556 1.191204 GCTTATCGCGATGCAGAACTC 59.809 52.381 31.05 10.09 0.00 3.01
6001 6557 2.736978 CTTATCGCGATGCAGAACTCT 58.263 47.619 31.05 4.15 0.00 3.24
6013 6569 3.383620 CAGAACTCTGACTGCTCTGTT 57.616 47.619 0.03 0.00 46.59 3.16
6017 6573 1.415659 ACTCTGACTGCTCTGTTTGCT 59.584 47.619 0.00 0.00 0.00 3.91
6023 6579 2.672381 GACTGCTCTGTTTGCTCAGATC 59.328 50.000 7.13 4.81 42.47 2.75
6031 6587 0.322816 TTTGCTCAGATCAGGGTGCC 60.323 55.000 0.00 0.00 0.00 5.01
6046 6602 1.445871 GTGCCGGAGAATTTTACCGT 58.554 50.000 5.05 0.00 44.34 4.83
6050 6606 3.002102 GCCGGAGAATTTTACCGTGTAA 58.998 45.455 5.05 0.00 44.34 2.41
6054 6610 6.614160 CCGGAGAATTTTACCGTGTAAAATT 58.386 36.000 28.33 28.33 44.79 1.82
6056 6612 7.299586 CGGAGAATTTTACCGTGTAAAATTGA 58.700 34.615 30.62 12.84 43.22 2.57
6067 6623 7.420002 ACCGTGTAAAATTGAAGTTTTCTACC 58.580 34.615 0.00 0.00 33.62 3.18
6154 8182 7.554118 GCTTCCATGCCATTCTATTATTAGCTA 59.446 37.037 0.00 0.00 0.00 3.32
6233 8261 2.484947 GGTGTTTGACTTCGACCCTCTT 60.485 50.000 0.00 0.00 0.00 2.85
6248 8276 3.272020 ACCCTCTTTCATCTCTCCTCTCT 59.728 47.826 0.00 0.00 0.00 3.10
6250 8278 4.716287 CCCTCTTTCATCTCTCCTCTCTTT 59.284 45.833 0.00 0.00 0.00 2.52
6251 8279 5.163416 CCCTCTTTCATCTCTCCTCTCTTTC 60.163 48.000 0.00 0.00 0.00 2.62
6252 8280 5.658190 CCTCTTTCATCTCTCCTCTCTTTCT 59.342 44.000 0.00 0.00 0.00 2.52
6263 8292 5.129485 TCTCCTCTCTTTCTCTCTCTCTCTC 59.871 48.000 0.00 0.00 0.00 3.20
6286 8315 3.669536 AGTCTTAACCAGAGCAAGAAGC 58.330 45.455 0.00 0.00 46.19 3.86
6311 8340 0.607762 TCGCCATGGCTTGCTGTTAA 60.608 50.000 33.07 5.48 39.32 2.01
6312 8341 0.179156 CGCCATGGCTTGCTGTTAAG 60.179 55.000 33.07 10.74 39.32 1.85
6313 8342 1.176527 GCCATGGCTTGCTGTTAAGA 58.823 50.000 29.98 0.00 38.26 2.10
6319 8357 3.141398 TGGCTTGCTGTTAAGAACTCAG 58.859 45.455 0.00 0.00 0.00 3.35
6321 8359 3.403038 GCTTGCTGTTAAGAACTCAGGA 58.597 45.455 0.00 0.00 0.00 3.86
6354 8392 2.293118 TGATGATGGTGGAGAGGGAGAA 60.293 50.000 0.00 0.00 0.00 2.87
6399 8443 3.009115 CGGGCCAGGGAAGGAAGA 61.009 66.667 4.39 0.00 0.00 2.87
6436 8480 4.504916 CCGGCAGCGACAGGAGAG 62.505 72.222 0.00 0.00 0.00 3.20
6437 8481 3.443925 CGGCAGCGACAGGAGAGA 61.444 66.667 0.00 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 5.733620 ATGAATGCATCACCTTTGTCTTT 57.266 34.783 0.00 0.00 41.93 2.52
42 43 2.423577 GTTCGGAACAACTGCTACCAT 58.576 47.619 15.70 0.00 0.00 3.55
46 50 2.922740 AAGGTTCGGAACAACTGCTA 57.077 45.000 21.36 0.00 0.00 3.49
49 53 4.364415 TTGAAAAGGTTCGGAACAACTG 57.636 40.909 21.36 0.00 36.46 3.16
50 54 4.202111 CCATTGAAAAGGTTCGGAACAACT 60.202 41.667 21.36 8.32 36.46 3.16
75 79 9.185680 AGTTCACACTTTTGGAAAGTACTAATT 57.814 29.630 5.81 0.00 0.00 1.40
84 90 5.242838 ACACTCAAGTTCACACTTTTGGAAA 59.757 36.000 0.00 0.00 40.66 3.13
85 91 4.764823 ACACTCAAGTTCACACTTTTGGAA 59.235 37.500 0.00 0.00 40.66 3.53
86 92 4.331968 ACACTCAAGTTCACACTTTTGGA 58.668 39.130 0.00 0.00 40.66 3.53
120 126 4.437682 AGAGACAACCAAAAGTGATGGA 57.562 40.909 0.00 0.00 40.56 3.41
131 137 9.841295 AATAAAGTTAGTGTTAAGAGACAACCA 57.159 29.630 0.00 0.00 0.00 3.67
159 165 8.153411 CGCAATAAACAAGCAAGTAATAACAAC 58.847 33.333 0.00 0.00 0.00 3.32
180 186 2.169832 ACAAGCTACACAGACGCAAT 57.830 45.000 0.00 0.00 0.00 3.56
185 191 4.148348 CGAGTTACAACAAGCTACACAGAC 59.852 45.833 0.00 0.00 0.00 3.51
231 245 9.748708 GGAAATGCAAGTTATTTAGATATGCAA 57.251 29.630 1.40 0.00 44.39 4.08
338 352 9.404348 GAAAGAAAAACTGAAGGATCAAAGATC 57.596 33.333 0.00 0.00 34.49 2.75
394 408 1.267582 GCCAACTCGAAGATAAAGCGC 60.268 52.381 0.00 0.00 33.89 5.92
416 430 0.615331 AGGAGCATCGAAGCCTGAAA 59.385 50.000 9.36 0.00 34.37 2.69
425 439 1.404391 GACGACCTTAAGGAGCATCGA 59.596 52.381 28.90 0.00 36.51 3.59
427 441 1.480954 TGGACGACCTTAAGGAGCATC 59.519 52.381 28.52 15.98 38.94 3.91
430 444 1.536284 CGATGGACGACCTTAAGGAGC 60.536 57.143 28.52 17.16 45.77 4.70
436 450 1.037493 CATCCCGATGGACGACCTTA 58.963 55.000 5.33 0.00 45.58 2.69
452 466 0.250513 AAAGCTCCACCGACTCCATC 59.749 55.000 0.00 0.00 0.00 3.51
454 468 1.118965 TCAAAGCTCCACCGACTCCA 61.119 55.000 0.00 0.00 0.00 3.86
470 484 5.185249 AGAAGGCACTAGAAATCTACGTCAA 59.815 40.000 0.00 0.00 38.49 3.18
471 485 4.705507 AGAAGGCACTAGAAATCTACGTCA 59.294 41.667 0.00 0.00 38.49 4.35
482 525 2.467880 CCACCCTAAGAAGGCACTAGA 58.532 52.381 0.00 0.00 42.14 2.43
489 532 1.153628 CGTCGCCACCCTAAGAAGG 60.154 63.158 0.00 0.00 43.25 3.46
500 543 0.322322 AAACCCTAACATCGTCGCCA 59.678 50.000 0.00 0.00 0.00 5.69
502 545 2.344025 AGAAAACCCTAACATCGTCGC 58.656 47.619 0.00 0.00 0.00 5.19
533 576 4.814294 AATCTGTCGTCGGCGCCC 62.814 66.667 23.46 6.76 38.14 6.13
535 578 2.395690 CAAATCTGTCGTCGGCGC 59.604 61.111 3.52 0.00 38.14 6.53
536 579 1.736645 ACCAAATCTGTCGTCGGCG 60.737 57.895 1.15 1.15 39.92 6.46
537 580 0.949105 ACACCAAATCTGTCGTCGGC 60.949 55.000 0.00 0.00 0.00 5.54
538 581 1.508632 AACACCAAATCTGTCGTCGG 58.491 50.000 0.00 0.00 0.00 4.79
539 582 2.666508 CCTAACACCAAATCTGTCGTCG 59.333 50.000 0.00 0.00 0.00 5.12
542 585 1.393539 CGCCTAACACCAAATCTGTCG 59.606 52.381 0.00 0.00 0.00 4.35
543 586 2.423577 ACGCCTAACACCAAATCTGTC 58.576 47.619 0.00 0.00 0.00 3.51
545 588 3.252215 TGAAACGCCTAACACCAAATCTG 59.748 43.478 0.00 0.00 0.00 2.90
547 590 3.003897 TGTGAAACGCCTAACACCAAATC 59.996 43.478 0.00 0.00 42.39 2.17
548 591 2.952978 TGTGAAACGCCTAACACCAAAT 59.047 40.909 0.00 0.00 42.39 2.32
561 604 2.609459 GTCATCTAGCCCATGTGAAACG 59.391 50.000 0.00 0.00 42.39 3.60
576 619 8.349245 CGTCTTAGAGACTAATCATTGTCATCT 58.651 37.037 6.53 0.00 42.92 2.90
577 620 8.132362 ACGTCTTAGAGACTAATCATTGTCATC 58.868 37.037 6.53 0.00 42.92 2.92
588 631 6.645790 AAGGACAAACGTCTTAGAGACTAA 57.354 37.500 6.53 0.00 42.92 2.24
590 633 6.002704 TCTAAGGACAAACGTCTTAGAGACT 58.997 40.000 15.80 0.00 42.92 3.24
591 634 6.251655 TCTAAGGACAAACGTCTTAGAGAC 57.748 41.667 15.80 0.00 41.71 3.36
598 642 1.968493 TGCCTCTAAGGACAAACGTCT 59.032 47.619 0.00 0.00 37.67 4.18
603 647 2.436417 GCATGTGCCTCTAAGGACAAA 58.564 47.619 0.00 0.00 37.67 2.83
611 655 1.519234 CTTCGCGCATGTGCCTCTA 60.519 57.895 24.76 5.94 37.91 2.43
626 670 2.996621 CAATGACAGTCGGGAAGTCTTC 59.003 50.000 3.80 3.80 33.56 2.87
646 690 2.419159 CGGAGATGGCTTGATCTTGTCA 60.419 50.000 0.00 0.00 32.57 3.58
668 712 4.373116 TTGTCGTCGCTCCCCTGC 62.373 66.667 0.00 0.00 0.00 4.85
669 713 2.125912 CTTGTCGTCGCTCCCCTG 60.126 66.667 0.00 0.00 0.00 4.45
671 715 2.722201 ATCCTTGTCGTCGCTCCCC 61.722 63.158 0.00 0.00 0.00 4.81
672 716 1.519455 CATCCTTGTCGTCGCTCCC 60.519 63.158 0.00 0.00 0.00 4.30
673 717 2.167861 GCATCCTTGTCGTCGCTCC 61.168 63.158 0.00 0.00 0.00 4.70
674 718 0.100682 TAGCATCCTTGTCGTCGCTC 59.899 55.000 0.00 0.00 0.00 5.03
675 719 0.179134 GTAGCATCCTTGTCGTCGCT 60.179 55.000 0.00 0.00 0.00 4.93
676 720 1.472276 CGTAGCATCCTTGTCGTCGC 61.472 60.000 0.00 0.00 0.00 5.19
677 721 0.098200 TCGTAGCATCCTTGTCGTCG 59.902 55.000 0.00 0.00 0.00 5.12
679 723 1.202417 CCATCGTAGCATCCTTGTCGT 60.202 52.381 0.00 0.00 0.00 4.34
680 724 1.491670 CCATCGTAGCATCCTTGTCG 58.508 55.000 0.00 0.00 0.00 4.35
681 725 1.202580 AGCCATCGTAGCATCCTTGTC 60.203 52.381 0.00 0.00 0.00 3.18
682 726 0.833287 AGCCATCGTAGCATCCTTGT 59.167 50.000 0.00 0.00 0.00 3.16
683 727 1.506493 GAGCCATCGTAGCATCCTTG 58.494 55.000 0.00 0.00 0.00 3.61
684 728 0.032678 CGAGCCATCGTAGCATCCTT 59.967 55.000 0.00 0.00 44.09 3.36
685 729 1.662608 CGAGCCATCGTAGCATCCT 59.337 57.895 0.00 0.00 44.09 3.24
686 730 4.251760 CGAGCCATCGTAGCATCC 57.748 61.111 0.00 0.00 44.09 3.51
695 739 1.352056 GCCGCTAAAACGAGCCATC 59.648 57.895 0.00 0.00 39.43 3.51
696 740 2.461110 CGCCGCTAAAACGAGCCAT 61.461 57.895 0.00 0.00 39.43 4.40
697 741 3.115892 CGCCGCTAAAACGAGCCA 61.116 61.111 0.00 0.00 39.43 4.75
698 742 3.861263 CCGCCGCTAAAACGAGCC 61.861 66.667 0.00 0.00 39.43 4.70
699 743 1.749609 CTACCGCCGCTAAAACGAGC 61.750 60.000 0.00 0.00 39.20 5.03
700 744 0.457337 ACTACCGCCGCTAAAACGAG 60.457 55.000 0.00 0.00 34.06 4.18
701 745 0.733566 CACTACCGCCGCTAAAACGA 60.734 55.000 0.00 0.00 34.06 3.85
702 746 1.689352 CCACTACCGCCGCTAAAACG 61.689 60.000 0.00 0.00 0.00 3.60
703 747 0.671472 ACCACTACCGCCGCTAAAAC 60.671 55.000 0.00 0.00 0.00 2.43
704 748 0.035176 AACCACTACCGCCGCTAAAA 59.965 50.000 0.00 0.00 0.00 1.52
705 749 0.671163 CAACCACTACCGCCGCTAAA 60.671 55.000 0.00 0.00 0.00 1.85
706 750 1.079681 CAACCACTACCGCCGCTAA 60.080 57.895 0.00 0.00 0.00 3.09
707 751 1.818959 AACAACCACTACCGCCGCTA 61.819 55.000 0.00 0.00 0.00 4.26
708 752 2.669777 AAACAACCACTACCGCCGCT 62.670 55.000 0.00 0.00 0.00 5.52
709 753 2.255881 AAACAACCACTACCGCCGC 61.256 57.895 0.00 0.00 0.00 6.53
710 754 0.881159 TCAAACAACCACTACCGCCG 60.881 55.000 0.00 0.00 0.00 6.46
711 755 1.199097 CATCAAACAACCACTACCGCC 59.801 52.381 0.00 0.00 0.00 6.13
712 756 1.199097 CCATCAAACAACCACTACCGC 59.801 52.381 0.00 0.00 0.00 5.68
713 757 2.225491 CACCATCAAACAACCACTACCG 59.775 50.000 0.00 0.00 0.00 4.02
714 758 2.030274 GCACCATCAAACAACCACTACC 60.030 50.000 0.00 0.00 0.00 3.18
715 759 2.621055 TGCACCATCAAACAACCACTAC 59.379 45.455 0.00 0.00 0.00 2.73
716 760 2.884012 CTGCACCATCAAACAACCACTA 59.116 45.455 0.00 0.00 0.00 2.74
717 761 1.682854 CTGCACCATCAAACAACCACT 59.317 47.619 0.00 0.00 0.00 4.00
718 762 1.269726 CCTGCACCATCAAACAACCAC 60.270 52.381 0.00 0.00 0.00 4.16
719 763 1.039068 CCTGCACCATCAAACAACCA 58.961 50.000 0.00 0.00 0.00 3.67
720 764 0.318120 CCCTGCACCATCAAACAACC 59.682 55.000 0.00 0.00 0.00 3.77
721 765 1.000274 GACCCTGCACCATCAAACAAC 60.000 52.381 0.00 0.00 0.00 3.32
722 766 1.327303 GACCCTGCACCATCAAACAA 58.673 50.000 0.00 0.00 0.00 2.83
723 767 0.184692 TGACCCTGCACCATCAAACA 59.815 50.000 0.00 0.00 0.00 2.83
724 768 1.474077 GATGACCCTGCACCATCAAAC 59.526 52.381 0.00 0.00 37.30 2.93
725 769 1.838112 GATGACCCTGCACCATCAAA 58.162 50.000 0.00 0.00 37.30 2.69
726 770 0.392863 CGATGACCCTGCACCATCAA 60.393 55.000 11.65 0.00 37.20 2.57
727 771 1.221566 CGATGACCCTGCACCATCA 59.778 57.895 11.65 3.80 37.20 3.07
728 772 0.107456 ATCGATGACCCTGCACCATC 59.893 55.000 0.00 0.00 34.81 3.51
729 773 0.179037 CATCGATGACCCTGCACCAT 60.179 55.000 21.02 0.00 0.00 3.55
730 774 1.221566 CATCGATGACCCTGCACCA 59.778 57.895 21.02 0.00 0.00 4.17
731 775 0.464036 TACATCGATGACCCTGCACC 59.536 55.000 31.33 0.00 0.00 5.01
732 776 2.309528 TTACATCGATGACCCTGCAC 57.690 50.000 31.33 0.00 0.00 4.57
733 777 3.558931 AATTACATCGATGACCCTGCA 57.441 42.857 31.33 7.28 0.00 4.41
734 778 4.900635 AAAATTACATCGATGACCCTGC 57.099 40.909 31.33 0.00 0.00 4.85
735 779 6.128035 TGACAAAAATTACATCGATGACCCTG 60.128 38.462 31.33 18.41 0.00 4.45
736 780 5.943416 TGACAAAAATTACATCGATGACCCT 59.057 36.000 31.33 11.80 0.00 4.34
737 781 6.189677 TGACAAAAATTACATCGATGACCC 57.810 37.500 31.33 8.51 0.00 4.46
738 782 7.250569 ACATGACAAAAATTACATCGATGACC 58.749 34.615 31.33 7.97 0.00 4.02
739 783 8.673626 AACATGACAAAAATTACATCGATGAC 57.326 30.769 31.33 2.44 0.00 3.06
740 784 9.689976 AAAACATGACAAAAATTACATCGATGA 57.310 25.926 31.33 10.96 0.00 2.92
741 785 9.730146 CAAAACATGACAAAAATTACATCGATG 57.270 29.630 23.68 23.68 0.00 3.84
742 786 9.689976 TCAAAACATGACAAAAATTACATCGAT 57.310 25.926 0.00 0.00 31.50 3.59
743 787 9.179552 CTCAAAACATGACAAAAATTACATCGA 57.820 29.630 0.00 0.00 33.47 3.59
744 788 8.427012 CCTCAAAACATGACAAAAATTACATCG 58.573 33.333 0.00 0.00 33.47 3.84
745 789 9.260002 ACCTCAAAACATGACAAAAATTACATC 57.740 29.630 0.00 0.00 33.47 3.06
746 790 9.044150 CACCTCAAAACATGACAAAAATTACAT 57.956 29.630 0.00 0.00 33.47 2.29
747 791 7.010923 GCACCTCAAAACATGACAAAAATTACA 59.989 33.333 0.00 0.00 33.47 2.41
748 792 7.224557 AGCACCTCAAAACATGACAAAAATTAC 59.775 33.333 0.00 0.00 33.47 1.89
749 793 7.271511 AGCACCTCAAAACATGACAAAAATTA 58.728 30.769 0.00 0.00 33.47 1.40
750 794 6.114767 AGCACCTCAAAACATGACAAAAATT 58.885 32.000 0.00 0.00 33.47 1.82
751 795 5.673514 AGCACCTCAAAACATGACAAAAAT 58.326 33.333 0.00 0.00 33.47 1.82
752 796 5.083533 AGCACCTCAAAACATGACAAAAA 57.916 34.783 0.00 0.00 33.47 1.94
753 797 4.734398 AGCACCTCAAAACATGACAAAA 57.266 36.364 0.00 0.00 33.47 2.44
754 798 4.734398 AAGCACCTCAAAACATGACAAA 57.266 36.364 0.00 0.00 33.47 2.83
755 799 4.081752 ACAAAGCACCTCAAAACATGACAA 60.082 37.500 0.00 0.00 33.47 3.18
756 800 3.446873 ACAAAGCACCTCAAAACATGACA 59.553 39.130 0.00 0.00 33.47 3.58
757 801 4.045636 ACAAAGCACCTCAAAACATGAC 57.954 40.909 0.00 0.00 33.47 3.06
758 802 4.037446 GGTACAAAGCACCTCAAAACATGA 59.963 41.667 0.00 0.00 36.38 3.07
759 803 4.037923 AGGTACAAAGCACCTCAAAACATG 59.962 41.667 0.00 0.00 43.04 3.21
760 804 4.215109 AGGTACAAAGCACCTCAAAACAT 58.785 39.130 0.00 0.00 43.04 2.71
761 805 3.626930 AGGTACAAAGCACCTCAAAACA 58.373 40.909 0.00 0.00 43.04 2.83
865 913 6.422223 CCTTCGATTGAACGATCTTTATTGG 58.578 40.000 0.00 0.00 41.82 3.16
873 921 0.938008 GCCCCTTCGATTGAACGATC 59.062 55.000 0.00 0.00 41.82 3.69
883 932 1.000060 CGTTATAATCCGCCCCTTCGA 60.000 52.381 0.00 0.00 0.00 3.71
897 946 5.327616 TCGTCTTTGGTTCCATCGTTATA 57.672 39.130 0.00 0.00 0.00 0.98
898 947 4.196626 TCGTCTTTGGTTCCATCGTTAT 57.803 40.909 0.00 0.00 0.00 1.89
907 956 6.923508 AGGATTTTGAAAATCGTCTTTGGTTC 59.076 34.615 20.59 6.40 0.00 3.62
913 962 6.486657 TCTGACAGGATTTTGAAAATCGTCTT 59.513 34.615 25.07 16.14 0.00 3.01
939 988 8.250143 ACTTTATTTTGAATCCACCTTGTTCT 57.750 30.769 0.00 0.00 0.00 3.01
1024 1075 1.027792 AGAGGAGAAGACCGCGAGAC 61.028 60.000 8.23 0.00 35.00 3.36
1088 1141 2.944390 TTGGGGCTAGGGTTGGGG 60.944 66.667 0.00 0.00 0.00 4.96
1493 1546 6.144402 CGAATCAACAAAACCCAAATCAGAAG 59.856 38.462 0.00 0.00 0.00 2.85
1555 1611 1.391485 CAGTTGTTCCTCAGCGAATCG 59.609 52.381 0.00 0.00 32.51 3.34
1634 1690 6.234920 TCGAACAAAATCAAGGGAGTATCAA 58.765 36.000 0.00 0.00 36.25 2.57
1640 1696 5.627499 TGAATCGAACAAAATCAAGGGAG 57.373 39.130 0.00 0.00 0.00 4.30
1641 1697 6.588719 ATTGAATCGAACAAAATCAAGGGA 57.411 33.333 11.30 0.00 33.91 4.20
1687 1743 4.631773 CCAGACATCCACAGCTGG 57.368 61.111 19.93 6.95 41.62 4.85
1770 1826 8.514594 TGCAAACTTGACTATAGAAGGATTTTG 58.485 33.333 6.78 8.51 0.00 2.44
1774 1830 7.398024 ACTTGCAAACTTGACTATAGAAGGAT 58.602 34.615 6.78 0.00 0.00 3.24
1787 1843 4.797471 TGCTGCTAATACTTGCAAACTTG 58.203 39.130 0.00 0.00 38.81 3.16
1788 1844 4.520492 ACTGCTGCTAATACTTGCAAACTT 59.480 37.500 0.00 0.00 38.81 2.66
1794 1850 5.698089 TGATGATACTGCTGCTAATACTTGC 59.302 40.000 0.00 0.00 0.00 4.01
2070 2126 2.775911 TTGATCTCAGCAAGGACCTG 57.224 50.000 0.00 0.00 0.00 4.00
2076 2132 4.219070 TCCAAACCAATTGATCTCAGCAAG 59.781 41.667 7.12 0.00 41.85 4.01
2108 2164 1.725164 GAAAGCTTACCGTCTTCACCG 59.275 52.381 0.00 0.00 0.00 4.94
2126 2182 6.790232 AAAACATTGAAGGACAGAAAGGAA 57.210 33.333 0.00 0.00 0.00 3.36
2201 2257 1.061711 GCTCTTCATTAGCAGTGCACG 59.938 52.381 19.20 7.77 39.83 5.34
2205 2261 5.447010 GCTAAACAGCTCTTCATTAGCAGTG 60.447 44.000 15.28 0.00 44.80 3.66
2213 2269 6.656693 ACAACATTAGCTAAACAGCTCTTCAT 59.343 34.615 10.85 0.00 45.00 2.57
2214 2270 5.997746 ACAACATTAGCTAAACAGCTCTTCA 59.002 36.000 10.85 0.00 45.00 3.02
2256 2312 3.089788 TGCTGCCACATCTAGCATG 57.910 52.632 0.00 0.00 42.05 4.06
2298 2354 3.195610 TGGTCTCATCAAGCTGACGTAAT 59.804 43.478 0.00 0.00 0.00 1.89
2330 2386 1.985622 TCCAACAATCTCCCCCTCAT 58.014 50.000 0.00 0.00 0.00 2.90
2366 2423 5.818336 TGTTTCCGAGTCTCACAAAAATACA 59.182 36.000 0.00 0.00 0.00 2.29
2377 2434 2.742589 GGAAACCATGTTTCCGAGTCTC 59.257 50.000 19.62 0.00 38.62 3.36
2404 2461 4.151883 AGGTCATACCAACACAAAGCATT 58.848 39.130 0.00 0.00 41.95 3.56
2475 2533 4.216257 AGGATCATTTCACAGTTTTGGACG 59.784 41.667 0.00 0.00 0.00 4.79
2587 2650 6.759497 AGCAGTCCTGAATGGTAAATTTAC 57.241 37.500 18.30 18.30 35.24 2.01
2590 2653 6.375455 CAGTTAGCAGTCCTGAATGGTAAATT 59.625 38.462 17.44 8.97 46.22 1.82
2630 2693 6.899393 TCTCTGCAAACCTGATAAATGTTT 57.101 33.333 0.00 0.00 32.70 2.83
2823 3148 7.072076 GGGGTATCCAGGTATACAATAATAGGG 59.928 44.444 5.01 0.00 34.58 3.53
2824 3149 7.849904 AGGGGTATCCAGGTATACAATAATAGG 59.150 40.741 5.01 0.00 38.24 2.57
2843 3168 2.498885 GGTTCAGTACACGAAGGGGTAT 59.501 50.000 0.00 0.00 0.00 2.73
2852 3177 1.519408 CTTTGGGGGTTCAGTACACG 58.481 55.000 0.00 0.00 0.00 4.49
2878 3203 8.260114 ACAAAATGCTAAATAGGGGAAATTCTG 58.740 33.333 0.00 0.00 0.00 3.02
3000 3339 6.812879 TGAGTGTACCTACATGATATACGG 57.187 41.667 0.00 0.00 38.63 4.02
3119 3458 5.921408 ACAGAGCGTTGTTTAAGAGTAAGAG 59.079 40.000 0.00 0.00 0.00 2.85
3136 3475 5.050091 AGTGTAATTTCTTGTCAACAGAGCG 60.050 40.000 0.00 0.00 0.00 5.03
3137 3476 6.305693 AGTGTAATTTCTTGTCAACAGAGC 57.694 37.500 0.00 0.00 0.00 4.09
3158 3497 6.498538 TCTTTATGAGAGAGAGAAGGGAAGT 58.501 40.000 0.00 0.00 0.00 3.01
3239 3578 7.750229 AACTCATTTCTTACTGCAGATGAAA 57.250 32.000 23.35 23.65 0.00 2.69
3280 3619 5.356190 GGGACGGAGGGAGTAAAATTTTAAG 59.644 44.000 12.14 0.89 0.00 1.85
3292 3631 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
3293 3632 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
3294 3633 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
3295 3634 2.228822 CACAAGAATTTTGGGACGGAGG 59.771 50.000 0.00 0.00 0.00 4.30
3296 3635 2.884639 ACACAAGAATTTTGGGACGGAG 59.115 45.455 8.87 0.00 0.00 4.63
3297 3636 2.882137 GACACAAGAATTTTGGGACGGA 59.118 45.455 8.87 0.00 0.00 4.69
3298 3637 2.884639 AGACACAAGAATTTTGGGACGG 59.115 45.455 8.87 0.00 0.00 4.79
3299 3638 4.568152 AAGACACAAGAATTTTGGGACG 57.432 40.909 8.87 0.00 0.00 4.79
3300 3639 8.887036 AATTTAAGACACAAGAATTTTGGGAC 57.113 30.769 8.87 4.19 0.00 4.46
3301 3640 9.323985 CAAATTTAAGACACAAGAATTTTGGGA 57.676 29.630 8.87 0.00 30.05 4.37
3302 3641 9.108284 ACAAATTTAAGACACAAGAATTTTGGG 57.892 29.630 0.00 2.34 31.35 4.12
3312 3651 9.146984 CCGTATCTAGACAAATTTAAGACACAA 57.853 33.333 0.00 0.00 0.00 3.33
3313 3652 8.525316 TCCGTATCTAGACAAATTTAAGACACA 58.475 33.333 0.00 0.00 0.00 3.72
3314 3653 8.922058 TCCGTATCTAGACAAATTTAAGACAC 57.078 34.615 0.00 0.00 0.00 3.67
3315 3654 9.529325 CATCCGTATCTAGACAAATTTAAGACA 57.471 33.333 0.00 0.00 0.00 3.41
3316 3655 9.530633 ACATCCGTATCTAGACAAATTTAAGAC 57.469 33.333 0.00 0.00 0.00 3.01
3334 3673 9.882996 CACGTTTTAGTATTAGATACATCCGTA 57.117 33.333 0.00 0.00 38.21 4.02
3335 3674 8.623903 TCACGTTTTAGTATTAGATACATCCGT 58.376 33.333 0.00 0.00 38.21 4.69
3336 3675 9.622004 ATCACGTTTTAGTATTAGATACATCCG 57.378 33.333 0.00 0.00 38.21 4.18
3348 3687 9.052759 GGGATGTATCAAATCACGTTTTAGTAT 57.947 33.333 0.00 0.00 0.00 2.12
3349 3688 8.262227 AGGGATGTATCAAATCACGTTTTAGTA 58.738 33.333 0.00 0.00 32.44 1.82
3350 3689 7.110155 AGGGATGTATCAAATCACGTTTTAGT 58.890 34.615 0.00 0.00 32.44 2.24
3351 3690 7.553881 AGGGATGTATCAAATCACGTTTTAG 57.446 36.000 0.00 0.00 32.44 1.85
3352 3691 9.621629 AATAGGGATGTATCAAATCACGTTTTA 57.378 29.630 0.00 0.00 32.44 1.52
3353 3692 8.519799 AATAGGGATGTATCAAATCACGTTTT 57.480 30.769 0.00 0.00 32.44 2.43
3354 3693 8.519799 AAATAGGGATGTATCAAATCACGTTT 57.480 30.769 0.00 0.00 32.44 3.60
3355 3694 9.273016 CTAAATAGGGATGTATCAAATCACGTT 57.727 33.333 0.00 0.00 32.44 3.99
3356 3695 8.647796 TCTAAATAGGGATGTATCAAATCACGT 58.352 33.333 0.00 0.00 32.44 4.49
3357 3696 8.926710 GTCTAAATAGGGATGTATCAAATCACG 58.073 37.037 0.00 0.00 32.44 4.35
3358 3697 9.778741 TGTCTAAATAGGGATGTATCAAATCAC 57.221 33.333 0.00 0.00 0.00 3.06
3380 3719 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
3381 3720 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
3382 3721 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
3383 3722 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
3384 3723 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
3385 3724 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
3386 3725 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
3387 3726 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
3388 3727 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
3389 3728 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
3390 3729 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
3391 3730 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
3392 3731 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
3393 3732 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
3394 3733 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
3395 3734 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
3396 3735 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
3397 3736 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
3398 3737 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
3399 3738 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
3400 3739 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
3401 3740 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
3402 3741 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
3403 3742 0.042131 AATGTACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
3404 3743 2.077687 TAATGTACTCCCTCCGTCCC 57.922 55.000 0.00 0.00 0.00 4.46
3405 3744 4.220163 CCTAATAATGTACTCCCTCCGTCC 59.780 50.000 0.00 0.00 0.00 4.79
3406 3745 4.831710 ACCTAATAATGTACTCCCTCCGTC 59.168 45.833 0.00 0.00 0.00 4.79
3407 3746 4.587684 CACCTAATAATGTACTCCCTCCGT 59.412 45.833 0.00 0.00 0.00 4.69
3408 3747 4.560919 GCACCTAATAATGTACTCCCTCCG 60.561 50.000 0.00 0.00 0.00 4.63
3409 3748 4.560919 CGCACCTAATAATGTACTCCCTCC 60.561 50.000 0.00 0.00 0.00 4.30
3410 3749 4.038883 ACGCACCTAATAATGTACTCCCTC 59.961 45.833 0.00 0.00 0.00 4.30
3411 3750 3.965347 ACGCACCTAATAATGTACTCCCT 59.035 43.478 0.00 0.00 0.00 4.20
3412 3751 4.332428 ACGCACCTAATAATGTACTCCC 57.668 45.455 0.00 0.00 0.00 4.30
3413 3752 6.093082 ACAAAACGCACCTAATAATGTACTCC 59.907 38.462 0.00 0.00 0.00 3.85
3414 3753 7.068692 ACAAAACGCACCTAATAATGTACTC 57.931 36.000 0.00 0.00 0.00 2.59
3415 3754 8.726870 ATACAAAACGCACCTAATAATGTACT 57.273 30.769 0.00 0.00 0.00 2.73
3446 3786 7.668525 ACTAGCCATAGTCAACTTACAAAAC 57.331 36.000 0.00 0.00 37.75 2.43
3451 3791 9.857957 GGATTATACTAGCCATAGTCAACTTAC 57.142 37.037 8.70 0.00 41.46 2.34
3497 3837 2.228822 GTGGTGGCATGTAAACCTTGAG 59.771 50.000 12.77 0.00 34.90 3.02
3596 3936 7.880160 AAAAGCAATAGTGAATGGTATAGCA 57.120 32.000 7.15 7.15 0.00 3.49
3625 3965 7.520451 ACCTAGTGTTTTCTTTCCCAATAAC 57.480 36.000 0.00 0.00 0.00 1.89
3658 3998 9.689976 CAAAATATGGTTCAACACAGATAACAA 57.310 29.630 0.00 0.00 0.00 2.83
3662 4002 9.460019 TGATCAAAATATGGTTCAACACAGATA 57.540 29.630 0.00 0.00 0.00 1.98
3778 4134 0.031178 CCTGCAAACTTCCACTGTGC 59.969 55.000 1.29 0.00 35.75 4.57
3878 4234 9.477484 AGCTCGTACACTAAGATAAATAAATGG 57.523 33.333 0.00 0.00 0.00 3.16
4114 4470 6.867662 ATGTTACTTATGTATTCAGCAGCC 57.132 37.500 0.00 0.00 0.00 4.85
4125 4481 6.598064 GGCCTCTTGTGTTATGTTACTTATGT 59.402 38.462 0.00 0.00 0.00 2.29
4126 4482 6.597672 TGGCCTCTTGTGTTATGTTACTTATG 59.402 38.462 3.32 0.00 0.00 1.90
4127 4483 6.717289 TGGCCTCTTGTGTTATGTTACTTAT 58.283 36.000 3.32 0.00 0.00 1.73
4128 4484 6.116711 TGGCCTCTTGTGTTATGTTACTTA 57.883 37.500 3.32 0.00 0.00 2.24
4129 4485 4.980573 TGGCCTCTTGTGTTATGTTACTT 58.019 39.130 3.32 0.00 0.00 2.24
4130 4486 4.634012 TGGCCTCTTGTGTTATGTTACT 57.366 40.909 3.32 0.00 0.00 2.24
4131 4487 7.172703 GGTATATGGCCTCTTGTGTTATGTTAC 59.827 40.741 3.32 0.00 0.00 2.50
4132 4488 7.071950 AGGTATATGGCCTCTTGTGTTATGTTA 59.928 37.037 3.32 0.00 0.00 2.41
4133 4489 6.062095 GGTATATGGCCTCTTGTGTTATGTT 58.938 40.000 3.32 0.00 0.00 2.71
4311 4668 4.470334 ACAAATGTATCAAATGGTGCCC 57.530 40.909 0.00 0.00 0.00 5.36
4331 4690 4.821805 CACCCCTAATTCACATGGACATAC 59.178 45.833 0.00 0.00 0.00 2.39
4346 4705 0.327095 TCTAGCATGGCCACCCCTAA 60.327 55.000 8.16 0.00 0.00 2.69
4432 4792 7.282224 TCCCATATTACAACATTAGAACAGCAC 59.718 37.037 0.00 0.00 0.00 4.40
4446 4806 8.754991 ACGACCAAAATAATCCCATATTACAA 57.245 30.769 0.00 0.00 0.00 2.41
4456 4827 6.972901 GGAATCAAAGACGACCAAAATAATCC 59.027 38.462 0.00 0.00 0.00 3.01
4466 4837 5.601662 TCTGATATGGAATCAAAGACGACC 58.398 41.667 0.00 0.00 0.00 4.79
4522 4893 1.759445 GGAAGAGCTCATCTGGCTACA 59.241 52.381 17.77 0.00 40.40 2.74
4523 4894 2.038659 AGGAAGAGCTCATCTGGCTAC 58.961 52.381 17.77 0.00 40.40 3.58
4533 4904 7.680442 AAGAGAAACATAAAAGGAAGAGCTC 57.320 36.000 5.27 5.27 0.00 4.09
4614 4985 4.456911 CACCACAAACTTGCATGATACTCT 59.543 41.667 6.60 0.00 0.00 3.24
4624 4995 0.820871 TCCCAACACCACAAACTTGC 59.179 50.000 0.00 0.00 0.00 4.01
4757 5129 8.621532 TGGCCATAAATGAATAACTCATCTAC 57.378 34.615 0.00 0.00 44.43 2.59
4760 5132 8.169977 TCTTGGCCATAAATGAATAACTCATC 57.830 34.615 6.09 0.00 44.43 2.92
4762 5134 7.953005 TTCTTGGCCATAAATGAATAACTCA 57.047 32.000 6.09 0.00 38.81 3.41
4763 5135 9.468532 GAATTCTTGGCCATAAATGAATAACTC 57.531 33.333 6.09 3.86 0.00 3.01
4792 5164 3.502211 AGCACAACCATAGTAACACTTGC 59.498 43.478 0.00 0.00 0.00 4.01
4842 5214 9.479549 ACCACTGGAAGATCAATATAAAAACAT 57.520 29.630 0.71 0.00 37.43 2.71
4843 5215 8.877864 ACCACTGGAAGATCAATATAAAAACA 57.122 30.769 0.71 0.00 37.43 2.83
4844 5216 8.406297 GGACCACTGGAAGATCAATATAAAAAC 58.594 37.037 0.71 0.00 37.43 2.43
4845 5217 8.112822 TGGACCACTGGAAGATCAATATAAAAA 58.887 33.333 0.71 0.00 37.43 1.94
4850 5222 4.445448 GCTGGACCACTGGAAGATCAATAT 60.445 45.833 0.71 0.00 37.43 1.28
4856 5228 1.211457 GATGCTGGACCACTGGAAGAT 59.789 52.381 0.71 0.00 37.43 2.40
4865 5237 6.101150 ACACTATTTATTAGGATGCTGGACCA 59.899 38.462 0.00 0.00 31.68 4.02
4874 5246 9.988815 CTGTTAGAGCACACTATTTATTAGGAT 57.011 33.333 0.00 0.00 31.68 3.24
4910 5282 5.068329 CAGATGACTAGGTTATCAGAGCACA 59.932 44.000 0.00 0.00 32.10 4.57
4911 5283 5.508825 CCAGATGACTAGGTTATCAGAGCAC 60.509 48.000 0.00 0.00 32.10 4.40
4952 5324 7.116948 CCAGATCTTACACTAAAACACACTGAG 59.883 40.741 0.00 0.00 0.00 3.35
5017 5389 2.260844 ACACACTGACTGACCCATTG 57.739 50.000 0.00 0.00 0.00 2.82
5022 5394 2.408050 CAAGCTACACACTGACTGACC 58.592 52.381 0.00 0.00 0.00 4.02
5029 5401 4.224433 CAAAATCAGCAAGCTACACACTG 58.776 43.478 0.00 0.00 0.00 3.66
5030 5402 3.304928 GCAAAATCAGCAAGCTACACACT 60.305 43.478 0.00 0.00 0.00 3.55
5031 5403 2.982470 GCAAAATCAGCAAGCTACACAC 59.018 45.455 0.00 0.00 0.00 3.82
5033 5405 2.229784 AGGCAAAATCAGCAAGCTACAC 59.770 45.455 0.00 0.00 0.00 2.90
5034 5406 2.517959 AGGCAAAATCAGCAAGCTACA 58.482 42.857 0.00 0.00 0.00 2.74
5035 5407 3.582714 AAGGCAAAATCAGCAAGCTAC 57.417 42.857 0.00 0.00 0.00 3.58
5037 5409 4.813750 ATAAAGGCAAAATCAGCAAGCT 57.186 36.364 0.00 0.00 0.00 3.74
5038 5410 6.966435 TTAATAAAGGCAAAATCAGCAAGC 57.034 33.333 0.00 0.00 0.00 4.01
5039 5411 8.309163 TGTTTAATAAAGGCAAAATCAGCAAG 57.691 30.769 0.00 0.00 0.00 4.01
5050 5422 7.441017 AGCATTCAACTTGTTTAATAAAGGCA 58.559 30.769 0.00 0.00 0.00 4.75
5060 5432 5.841957 AACTCTGAGCATTCAACTTGTTT 57.158 34.783 4.19 0.00 31.69 2.83
5066 5438 7.081526 ACAATGATAACTCTGAGCATTCAAC 57.918 36.000 4.19 0.00 31.69 3.18
5154 5526 4.478371 CAGCAGAGCGGGGCATGA 62.478 66.667 0.00 0.00 0.00 3.07
5206 5578 3.117171 AGCAGCTCTTTCGCAGCG 61.117 61.111 9.06 9.06 45.63 5.18
5223 5595 1.717791 GCATCATAACAGCCAGCGCA 61.718 55.000 11.47 0.00 37.52 6.09
5236 5608 3.649981 ACTCTATGGCACCTTAGCATCAT 59.350 43.478 0.00 0.00 35.83 2.45
5239 5611 4.840680 TCATACTCTATGGCACCTTAGCAT 59.159 41.667 0.00 0.00 36.81 3.79
5270 5645 2.680312 TCCAGAGACATAGCACTTGC 57.320 50.000 0.00 0.00 42.49 4.01
5271 5646 3.196469 TCCTTCCAGAGACATAGCACTTG 59.804 47.826 0.00 0.00 0.00 3.16
5356 5733 6.426646 AGTCCATTGTGAAGAAGACTACTT 57.573 37.500 0.00 0.00 39.24 2.24
5358 5735 6.566753 GCAAAGTCCATTGTGAAGAAGACTAC 60.567 42.308 0.00 0.00 33.62 2.73
5362 5739 4.206375 TGCAAAGTCCATTGTGAAGAAGA 58.794 39.130 0.00 0.00 32.80 2.87
5380 5757 0.819666 TACACCAACCGCACATGCAA 60.820 50.000 4.49 0.00 42.21 4.08
5389 5766 1.264557 TGAACGCAAATACACCAACCG 59.735 47.619 0.00 0.00 0.00 4.44
5394 5771 6.551736 ACATCTTTATGAACGCAAATACACC 58.448 36.000 0.00 0.00 36.54 4.16
5430 5808 1.081242 ACCAAAGCAAATCGCAGCG 60.081 52.632 9.06 9.06 46.13 5.18
5438 5816 6.317140 TCAATTATGCAAAACACCAAAGCAAA 59.683 30.769 0.00 0.00 38.85 3.68
5489 5867 7.222417 CACAAGATGAAGCAACAATGTGTAAAA 59.778 33.333 13.37 0.00 33.06 1.52
5492 5870 5.761003 CACAAGATGAAGCAACAATGTGTA 58.239 37.500 13.37 0.00 33.06 2.90
5497 5875 2.923605 GCGCACAAGATGAAGCAACAAT 60.924 45.455 0.30 0.00 34.70 2.71
5499 5877 0.040157 GCGCACAAGATGAAGCAACA 60.040 50.000 0.30 0.00 34.70 3.33
5504 5882 2.099062 GCGGCGCACAAGATGAAG 59.901 61.111 29.21 0.00 0.00 3.02
5513 5891 2.071844 TAGACTAGATGGCGGCGCAC 62.072 60.000 34.36 22.55 0.00 5.34
5551 5929 3.749665 TTTGGCACCAGAAAATCCAAG 57.250 42.857 0.00 0.00 37.98 3.61
5560 5938 2.752354 CGGATGTATTTTTGGCACCAGA 59.248 45.455 0.00 0.00 0.00 3.86
5580 5967 0.743345 GGAGGTTTGAATCCCGTCCG 60.743 60.000 0.00 0.00 0.00 4.79
5591 5978 5.064707 CACTCGGTACATAATTGGAGGTTTG 59.935 44.000 0.00 0.00 0.00 2.93
5592 5979 5.046159 TCACTCGGTACATAATTGGAGGTTT 60.046 40.000 0.00 0.00 0.00 3.27
5594 5981 4.028131 TCACTCGGTACATAATTGGAGGT 58.972 43.478 0.00 0.00 0.00 3.85
5596 5983 5.466728 CCATTCACTCGGTACATAATTGGAG 59.533 44.000 0.00 0.00 0.00 3.86
5597 5984 5.129650 TCCATTCACTCGGTACATAATTGGA 59.870 40.000 0.00 0.00 0.00 3.53
5633 6040 7.821846 GGTAAATCAACAATTTTCATTGGGCTA 59.178 33.333 0.31 0.00 43.82 3.93
5644 6051 3.484683 CGCGACGGTAAATCAACAATTT 58.515 40.909 0.00 0.00 40.67 1.82
5646 6053 1.395608 CCGCGACGGTAAATCAACAAT 59.604 47.619 8.23 0.00 42.73 2.71
5648 6055 2.447408 CCGCGACGGTAAATCAACA 58.553 52.632 8.23 0.00 42.73 3.33
5660 6067 4.719369 AGAAGTCACGGCCGCGAC 62.719 66.667 33.51 33.51 0.00 5.19
5661 6068 3.986006 AAGAAGTCACGGCCGCGA 61.986 61.111 28.58 20.70 0.00 5.87
5662 6069 3.777925 CAAGAAGTCACGGCCGCG 61.778 66.667 28.58 18.04 0.00 6.46
5663 6070 1.959226 TTCAAGAAGTCACGGCCGC 60.959 57.895 28.58 9.52 0.00 6.53
5664 6071 1.566018 GGTTCAAGAAGTCACGGCCG 61.566 60.000 26.86 26.86 0.00 6.13
5665 6072 1.566018 CGGTTCAAGAAGTCACGGCC 61.566 60.000 0.00 0.00 0.00 6.13
5666 6073 0.878961 ACGGTTCAAGAAGTCACGGC 60.879 55.000 0.00 0.00 0.00 5.68
5667 6074 1.578583 AACGGTTCAAGAAGTCACGG 58.421 50.000 0.00 0.00 0.00 4.94
5669 6076 3.486875 CCACAAACGGTTCAAGAAGTCAC 60.487 47.826 0.00 0.00 0.00 3.67
5670 6077 2.680841 CCACAAACGGTTCAAGAAGTCA 59.319 45.455 0.00 0.00 0.00 3.41
5671 6078 2.540973 GCCACAAACGGTTCAAGAAGTC 60.541 50.000 0.00 0.00 0.00 3.01
5672 6079 1.404035 GCCACAAACGGTTCAAGAAGT 59.596 47.619 0.00 0.00 0.00 3.01
5673 6080 1.269051 GGCCACAAACGGTTCAAGAAG 60.269 52.381 0.00 0.00 0.00 2.85
5674 6081 0.741915 GGCCACAAACGGTTCAAGAA 59.258 50.000 0.00 0.00 0.00 2.52
5675 6082 1.440938 CGGCCACAAACGGTTCAAGA 61.441 55.000 2.24 0.00 0.00 3.02
5676 6083 1.008995 CGGCCACAAACGGTTCAAG 60.009 57.895 2.24 0.00 0.00 3.02
5679 6086 1.864176 CTACGGCCACAAACGGTTC 59.136 57.895 2.24 0.00 0.00 3.62
5681 6123 2.667199 GCTACGGCCACAAACGGT 60.667 61.111 2.24 0.00 0.00 4.83
5750 6201 4.576463 CCCACCATCTTTACAAGATACTGC 59.424 45.833 0.00 0.00 46.20 4.40
5803 6257 4.593206 AGACAACTTATCTGGTCCTCACAA 59.407 41.667 0.00 0.00 0.00 3.33
5820 6283 2.617274 GCCAGGCGAACCAGACAAC 61.617 63.158 0.00 0.00 39.06 3.32
5839 6302 0.942410 CGCCCGAGACGAGACAAAAA 60.942 55.000 0.00 0.00 0.00 1.94
5840 6303 1.372499 CGCCCGAGACGAGACAAAA 60.372 57.895 0.00 0.00 0.00 2.44
5871 6334 4.810191 ACAAATAGAGGTGAGACTGGAC 57.190 45.455 0.00 0.00 0.00 4.02
5880 6343 5.990996 ACAAATGCCAAAACAAATAGAGGTG 59.009 36.000 0.00 0.00 0.00 4.00
5881 6344 5.990996 CACAAATGCCAAAACAAATAGAGGT 59.009 36.000 0.00 0.00 0.00 3.85
5927 6391 9.448294 CTGTAGTATATGATGATGTCGATGATG 57.552 37.037 0.00 0.00 0.00 3.07
5929 6393 8.567285 ACTGTAGTATATGATGATGTCGATGA 57.433 34.615 0.00 0.00 0.00 2.92
6000 6556 1.799403 CTGAGCAAACAGAGCAGTCAG 59.201 52.381 0.00 0.00 39.94 3.51
6001 6557 1.413812 TCTGAGCAAACAGAGCAGTCA 59.586 47.619 0.00 0.00 41.21 3.41
6013 6569 1.300963 GGCACCCTGATCTGAGCAA 59.699 57.895 0.38 0.00 0.00 3.91
6017 6573 2.038813 TCCGGCACCCTGATCTGA 59.961 61.111 0.00 0.00 0.00 3.27
6023 6579 1.743394 GTAAAATTCTCCGGCACCCTG 59.257 52.381 0.00 0.00 0.00 4.45
6031 6587 7.299586 TCAATTTTACACGGTAAAATTCTCCG 58.700 34.615 26.92 20.69 42.07 4.63
6046 6602 9.255304 GCAATGGTAGAAAACTTCAATTTTACA 57.745 29.630 0.00 0.00 31.90 2.41
6054 6610 8.001881 TGTTTAAGCAATGGTAGAAAACTTCA 57.998 30.769 14.50 0.89 0.00 3.02
6056 6612 9.313118 CTTTGTTTAAGCAATGGTAGAAAACTT 57.687 29.630 5.52 0.00 0.00 2.66
6062 6618 4.219725 GCCCTTTGTTTAAGCAATGGTAGA 59.780 41.667 25.34 4.55 40.18 2.59
6063 6619 4.494484 GCCCTTTGTTTAAGCAATGGTAG 58.506 43.478 25.34 16.73 40.18 3.18
6067 6623 2.730928 CACGCCCTTTGTTTAAGCAATG 59.269 45.455 5.52 8.08 32.19 2.82
6154 8182 0.901124 AGAGCTCGAGACTTTGGCAT 59.099 50.000 18.75 0.00 0.00 4.40
6233 8261 6.069440 AGAGAGAGAAAGAGAGGAGAGATGAA 60.069 42.308 0.00 0.00 0.00 2.57
6248 8276 7.175990 GGTTAAGACTTGAGAGAGAGAGAGAAA 59.824 40.741 0.00 0.00 0.00 2.52
6250 8278 6.177610 GGTTAAGACTTGAGAGAGAGAGAGA 58.822 44.000 0.00 0.00 0.00 3.10
6251 8279 5.943416 TGGTTAAGACTTGAGAGAGAGAGAG 59.057 44.000 0.00 0.00 0.00 3.20
6252 8280 5.882040 TGGTTAAGACTTGAGAGAGAGAGA 58.118 41.667 0.00 0.00 0.00 3.10
6263 8292 4.083590 GCTTCTTGCTCTGGTTAAGACTTG 60.084 45.833 0.00 0.00 38.95 3.16
6294 8323 1.176527 TCTTAACAGCAAGCCATGGC 58.823 50.000 30.12 30.12 42.33 4.40
6311 8340 1.846712 GCCCCTTGCTCCTGAGTTCT 61.847 60.000 0.00 0.00 36.87 3.01
6312 8341 1.377856 GCCCCTTGCTCCTGAGTTC 60.378 63.158 0.00 0.00 36.87 3.01
6313 8342 2.759795 GCCCCTTGCTCCTGAGTT 59.240 61.111 0.00 0.00 36.87 3.01
6354 8392 2.686118 GCCATTGCTTCTCCCTCATCTT 60.686 50.000 0.00 0.00 33.53 2.40
6389 8427 1.458398 GCTTCTGCTTCTTCCTTCCC 58.542 55.000 0.00 0.00 36.03 3.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.