Multiple sequence alignment - TraesCS2B01G323600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G323600 chr2B 100.000 3607 0 0 1 3607 462881838 462885444 0.000000e+00 6661.0
1 TraesCS2B01G323600 chr2D 90.545 2718 133 51 305 2966 391259841 391262490 0.000000e+00 3482.0
2 TraesCS2B01G323600 chr2A 93.903 1837 60 16 1187 3000 527900207 527902014 0.000000e+00 2724.0
3 TraesCS2B01G323600 chr2A 87.991 891 42 31 279 1144 527899349 527900199 0.000000e+00 992.0
4 TraesCS2B01G323600 chr2A 80.614 619 84 21 2998 3607 527902163 527902754 2.560000e-121 446.0
5 TraesCS2B01G323600 chr2A 89.113 248 23 2 1 247 527899110 527899354 4.520000e-79 305.0
6 TraesCS2B01G323600 chr2A 80.678 295 52 5 3039 3331 523457595 523457886 1.300000e-54 224.0
7 TraesCS2B01G323600 chr5A 81.699 306 44 9 3034 3330 689656863 689657165 1.000000e-60 244.0
8 TraesCS2B01G323600 chr5D 81.433 307 44 8 3034 3330 415748992 415748689 4.650000e-59 239.0
9 TraesCS2B01G323600 chr6B 84.483 232 32 4 3029 3259 290187895 290187667 3.620000e-55 226.0
10 TraesCS2B01G323600 chr3B 80.602 299 52 6 3034 3330 605273229 605272935 3.620000e-55 226.0
11 TraesCS2B01G323600 chr1B 84.211 228 34 2 3033 3259 547249320 547249094 1.690000e-53 220.0
12 TraesCS2B01G323600 chr1B 94.949 99 3 2 2744 2841 583974443 583974540 1.730000e-33 154.0
13 TraesCS2B01G323600 chr1B 96.667 90 2 1 2751 2839 584107486 584107575 8.070000e-32 148.0
14 TraesCS2B01G323600 chr6A 84.141 227 34 2 3034 3259 614484165 614483940 6.060000e-53 219.0
15 TraesCS2B01G323600 chr6A 87.838 74 8 1 2401 2473 484068031 484068104 6.420000e-13 86.1
16 TraesCS2B01G323600 chrUn 79.856 278 52 4 3034 3309 210625708 210625983 2.200000e-47 200.0
17 TraesCS2B01G323600 chr7B 98.824 85 1 0 2757 2841 657534425 657534509 6.240000e-33 152.0
18 TraesCS2B01G323600 chr6D 97.674 86 2 0 2756 2841 306134852 306134937 8.070000e-32 148.0
19 TraesCS2B01G323600 chr7A 96.629 89 1 2 2757 2843 677938928 677939016 2.900000e-31 147.0
20 TraesCS2B01G323600 chr5B 93.000 100 6 1 2749 2847 450665270 450665369 1.040000e-30 145.0
21 TraesCS2B01G323600 chr1D 93.814 97 4 2 2757 2851 432400396 432400492 1.040000e-30 145.0
22 TraesCS2B01G323600 chr7D 94.624 93 4 1 2747 2839 458941794 458941703 3.750000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G323600 chr2B 462881838 462885444 3606 False 6661.00 6661 100.00000 1 3607 1 chr2B.!!$F1 3606
1 TraesCS2B01G323600 chr2D 391259841 391262490 2649 False 3482.00 3482 90.54500 305 2966 1 chr2D.!!$F1 2661
2 TraesCS2B01G323600 chr2A 527899110 527902754 3644 False 1116.75 2724 87.90525 1 3607 4 chr2A.!!$F2 3606

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
931 964 0.256752 TCTTGATGGGAGTGGCATGG 59.743 55.0 0.0 0.0 0.0 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2609 2659 0.756294 TCGCCACAATACATCCGGAT 59.244 50.0 12.38 12.38 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.299570 GTTTCTGTCATAATGTCAATTTGAGGT 58.700 33.333 0.00 0.00 0.00 3.85
43 44 8.839343 CAATTTGAGGTCATTATAGCATACACA 58.161 33.333 0.00 0.00 0.00 3.72
75 76 9.874215 CAGTCATTAAATGTACTGCAATCTATG 57.126 33.333 0.00 0.00 34.32 2.23
95 96 2.231964 TGCTCTGCAAATGGAACAATCC 59.768 45.455 0.00 0.00 37.54 3.01
96 97 4.068135 TGCTCTGCAAATGGAACAATCCT 61.068 43.478 0.00 0.00 40.31 3.24
107 108 5.039920 TGGAACAATCCTGATCCATGTAG 57.960 43.478 0.39 0.00 46.49 2.74
124 126 6.731919 TCCATGTAGGGAGGAAAAGTTTACTA 59.268 38.462 0.00 0.00 38.24 1.82
129 131 4.898320 GGGAGGAAAAGTTTACTACCGAA 58.102 43.478 1.29 0.00 42.17 4.30
134 136 6.824553 AGGAAAAGTTTACTACCGAAGAGTT 58.175 36.000 0.00 0.00 26.97 3.01
139 141 6.645790 AGTTTACTACCGAAGAGTTGAGAA 57.354 37.500 0.00 0.00 0.00 2.87
140 142 7.229581 AGTTTACTACCGAAGAGTTGAGAAT 57.770 36.000 0.00 0.00 0.00 2.40
174 176 1.002900 CAGTTGGCAAACAGTACCACG 60.003 52.381 6.76 0.00 38.88 4.94
182 184 0.812412 AACAGTACCACGCCACACAC 60.812 55.000 0.00 0.00 0.00 3.82
185 187 0.602638 AGTACCACGCCACACACATG 60.603 55.000 0.00 0.00 0.00 3.21
186 188 0.882927 GTACCACGCCACACACATGT 60.883 55.000 0.00 0.00 40.80 3.21
187 189 0.680061 TACCACGCCACACACATGTA 59.320 50.000 0.00 0.00 36.72 2.29
208 210 6.978338 TGTAGTAGACAGTAACACCAAAGAG 58.022 40.000 0.00 0.00 32.86 2.85
216 218 6.838382 ACAGTAACACCAAAGAGATTTACCT 58.162 36.000 0.00 0.00 0.00 3.08
224 226 7.038302 ACACCAAAGAGATTTACCTCACAGATA 60.038 37.037 0.00 0.00 35.68 1.98
226 228 8.383175 ACCAAAGAGATTTACCTCACAGATAAA 58.617 33.333 0.00 0.00 35.68 1.40
263 265 8.074613 TGACCCATTATACATATACACTAGCC 57.925 38.462 0.00 0.00 0.00 3.93
264 266 7.125204 TGACCCATTATACATATACACTAGCCC 59.875 40.741 0.00 0.00 0.00 5.19
265 267 7.196901 ACCCATTATACATATACACTAGCCCT 58.803 38.462 0.00 0.00 0.00 5.19
266 268 7.125811 ACCCATTATACATATACACTAGCCCTG 59.874 40.741 0.00 0.00 0.00 4.45
267 269 7.125811 CCCATTATACATATACACTAGCCCTGT 59.874 40.741 0.00 0.00 0.00 4.00
268 270 8.540388 CCATTATACATATACACTAGCCCTGTT 58.460 37.037 0.00 0.00 0.00 3.16
269 271 9.944376 CATTATACATATACACTAGCCCTGTTT 57.056 33.333 0.00 0.00 0.00 2.83
270 272 9.944376 ATTATACATATACACTAGCCCTGTTTG 57.056 33.333 0.00 0.00 0.00 2.93
271 273 5.036117 ACATATACACTAGCCCTGTTTGG 57.964 43.478 0.00 0.00 0.00 3.28
288 290 2.770130 GGCCTGTCCCATTTCCCA 59.230 61.111 0.00 0.00 0.00 4.37
289 291 1.380380 GGCCTGTCCCATTTCCCAG 60.380 63.158 0.00 0.00 0.00 4.45
290 292 1.384191 GCCTGTCCCATTTCCCAGT 59.616 57.895 0.00 0.00 0.00 4.00
291 293 0.623723 GCCTGTCCCATTTCCCAGTA 59.376 55.000 0.00 0.00 0.00 2.74
292 294 1.215423 GCCTGTCCCATTTCCCAGTAT 59.785 52.381 0.00 0.00 0.00 2.12
293 295 2.441750 GCCTGTCCCATTTCCCAGTATA 59.558 50.000 0.00 0.00 0.00 1.47
294 296 3.117663 GCCTGTCCCATTTCCCAGTATAA 60.118 47.826 0.00 0.00 0.00 0.98
299 301 6.364701 TGTCCCATTTCCCAGTATAATTCAG 58.635 40.000 0.00 0.00 0.00 3.02
301 303 7.060421 GTCCCATTTCCCAGTATAATTCAGAA 58.940 38.462 0.00 0.00 0.00 3.02
302 304 7.229506 GTCCCATTTCCCAGTATAATTCAGAAG 59.770 40.741 0.00 0.00 0.00 2.85
303 305 7.062957 CCCATTTCCCAGTATAATTCAGAAGT 58.937 38.462 0.00 0.00 0.00 3.01
320 322 2.348411 AGTTGATATCCTTTGGCCCG 57.652 50.000 0.00 0.00 0.00 6.13
322 324 2.775384 AGTTGATATCCTTTGGCCCGTA 59.225 45.455 0.00 0.00 0.00 4.02
331 333 2.165641 CCTTTGGCCCGTAAATTTCTCC 59.834 50.000 0.00 0.00 0.00 3.71
389 394 0.541296 AATTGCAGGCAGAACAGGCT 60.541 50.000 0.00 0.00 46.40 4.58
393 408 1.559219 TGCAGGCAGAACAGGCTTATA 59.441 47.619 0.00 0.00 43.24 0.98
464 491 2.102749 CACATTGCATTCCGGCCG 59.897 61.111 21.04 21.04 0.00 6.13
574 603 6.836527 TCCCTTTCAAAGACTATCACCAAAAA 59.163 34.615 0.00 0.00 0.00 1.94
613 642 0.322456 TGCGGCTGCCTTTATCTTGT 60.322 50.000 16.57 0.00 41.78 3.16
621 650 3.270027 TGCCTTTATCTTGTCATGACCG 58.730 45.455 22.85 13.79 0.00 4.79
679 712 1.010793 TCCTCTCCCTCCTCTCTCTCT 59.989 57.143 0.00 0.00 0.00 3.10
681 714 2.412591 CTCTCCCTCCTCTCTCTCTCT 58.587 57.143 0.00 0.00 0.00 3.10
683 716 2.022035 TCTCCCTCCTCTCTCTCTCTCT 60.022 54.545 0.00 0.00 0.00 3.10
684 717 2.370189 CTCCCTCCTCTCTCTCTCTCTC 59.630 59.091 0.00 0.00 0.00 3.20
686 719 2.412591 CCTCCTCTCTCTCTCTCTCCT 58.587 57.143 0.00 0.00 0.00 3.69
687 720 2.370189 CCTCCTCTCTCTCTCTCTCCTC 59.630 59.091 0.00 0.00 0.00 3.71
688 721 2.370189 CTCCTCTCTCTCTCTCTCCTCC 59.630 59.091 0.00 0.00 0.00 4.30
693 726 1.843851 TCTCTCTCTCTCCTCCCAGAC 59.156 57.143 0.00 0.00 0.00 3.51
697 730 1.563879 TCTCTCTCCTCCCAGACAGAG 59.436 57.143 0.00 0.00 34.75 3.35
708 741 2.368439 CCAGACAGAGAGACAGAGAGG 58.632 57.143 0.00 0.00 0.00 3.69
720 753 1.274712 CAGAGAGGGAGCCCATATCC 58.725 60.000 8.53 0.00 38.92 2.59
738 771 1.694150 TCCATATCCAGTACTGCCTGC 59.306 52.381 17.86 0.00 0.00 4.85
766 799 2.386660 GCTGCTGCGACTCCTGTTC 61.387 63.158 0.00 0.00 0.00 3.18
810 843 1.760029 TCTGCATCAAGTACGGCCATA 59.240 47.619 2.24 0.00 0.00 2.74
811 844 2.138320 CTGCATCAAGTACGGCCATAG 58.862 52.381 2.24 0.00 0.00 2.23
812 845 1.202639 TGCATCAAGTACGGCCATAGG 60.203 52.381 2.24 0.00 0.00 2.57
813 846 1.878102 GCATCAAGTACGGCCATAGGG 60.878 57.143 2.24 0.00 37.18 3.53
814 847 1.056660 ATCAAGTACGGCCATAGGGG 58.943 55.000 2.24 0.00 40.85 4.79
846 879 2.507992 AGCATCTCGCGCAGTGAC 60.508 61.111 8.75 0.00 44.70 3.67
889 922 3.423154 CGGGTTTCGTCTGCTGCC 61.423 66.667 0.00 0.00 0.00 4.85
930 963 2.133281 TTCTTGATGGGAGTGGCATG 57.867 50.000 0.00 0.00 0.00 4.06
931 964 0.256752 TCTTGATGGGAGTGGCATGG 59.743 55.000 0.00 0.00 0.00 3.66
932 965 0.754217 CTTGATGGGAGTGGCATGGG 60.754 60.000 0.00 0.00 0.00 4.00
933 966 1.213619 TTGATGGGAGTGGCATGGGA 61.214 55.000 0.00 0.00 0.00 4.37
934 967 1.152881 GATGGGAGTGGCATGGGAC 60.153 63.158 0.00 0.00 0.00 4.46
935 968 1.620589 ATGGGAGTGGCATGGGACT 60.621 57.895 0.00 0.00 0.00 3.85
967 1000 1.202770 CCTCCAACCTCCAACGAGTTT 60.203 52.381 0.00 0.00 33.93 2.66
971 1004 4.131596 TCCAACCTCCAACGAGTTTAAAG 58.868 43.478 0.00 0.00 33.93 1.85
1077 1111 1.055040 TGTTTGCCATCTTTTGGGGG 58.945 50.000 0.00 0.00 46.55 5.40
1121 1155 3.137544 TGGTATGAGTGGAGTGGTTTGTT 59.862 43.478 0.00 0.00 0.00 2.83
1122 1156 4.142038 GGTATGAGTGGAGTGGTTTGTTT 58.858 43.478 0.00 0.00 0.00 2.83
1144 1178 3.576078 TCTCTTTTTCCTGCTTGGACA 57.424 42.857 0.00 0.00 46.14 4.02
1185 1231 3.414700 GCTCTTGTGTGGGCGTCG 61.415 66.667 0.00 0.00 0.00 5.12
1205 1251 3.684788 TCGTAGCTTCTTCCATTTCTTGC 59.315 43.478 0.00 0.00 0.00 4.01
1227 1273 1.936547 GGATTCGTGTTGATCTCTGCC 59.063 52.381 0.00 0.00 0.00 4.85
1228 1274 2.419297 GGATTCGTGTTGATCTCTGCCT 60.419 50.000 0.00 0.00 0.00 4.75
1230 1276 1.256812 TCGTGTTGATCTCTGCCTGA 58.743 50.000 0.00 0.00 0.00 3.86
1232 1278 1.738365 CGTGTTGATCTCTGCCTGAGG 60.738 57.143 0.00 0.00 42.86 3.86
1233 1279 0.907486 TGTTGATCTCTGCCTGAGGG 59.093 55.000 0.00 0.00 42.86 4.30
1234 1280 0.908198 GTTGATCTCTGCCTGAGGGT 59.092 55.000 0.00 0.00 42.86 4.34
1236 1282 1.145819 GATCTCTGCCTGAGGGTGC 59.854 63.158 0.00 0.00 42.86 5.01
1237 1283 2.322638 GATCTCTGCCTGAGGGTGCC 62.323 65.000 0.00 0.00 42.86 5.01
1238 1284 4.463879 CTCTGCCTGAGGGTGCCG 62.464 72.222 0.00 0.00 39.08 5.69
1754 1800 2.202987 CTCAGCCTCATGCCGTCC 60.203 66.667 0.00 0.00 42.71 4.79
2453 2499 0.329596 AATCCAGGTGAACCAGAGCC 59.670 55.000 1.62 0.00 38.89 4.70
2455 2501 2.046892 CAGGTGAACCAGAGCCGG 60.047 66.667 0.00 0.00 38.89 6.13
2545 2595 6.262944 GTCTGCCAATGTCATGGTATTCAATA 59.737 38.462 0.00 0.00 42.75 1.90
2552 2602 3.559655 GTCATGGTATTCAATAGCGTGCA 59.440 43.478 19.87 9.37 45.27 4.57
2553 2603 4.035091 GTCATGGTATTCAATAGCGTGCAA 59.965 41.667 19.87 5.32 45.27 4.08
2581 2631 4.085357 TGTAGTGGCAATTCTGTGAAGT 57.915 40.909 0.00 0.00 0.00 3.01
2583 2633 3.996150 AGTGGCAATTCTGTGAAGTTG 57.004 42.857 0.00 0.00 0.00 3.16
2586 2636 2.034939 TGGCAATTCTGTGAAGTTGCAG 59.965 45.455 18.84 0.00 46.46 4.41
2609 2659 7.467267 GCAGGCGTCAATTGAGAGATTAAATTA 60.467 37.037 8.80 0.00 0.00 1.40
2670 2722 0.375106 GCTACTGGAAACTGCGATGC 59.625 55.000 0.00 0.00 0.00 3.91
2699 2751 7.158697 AGTTGCATTAATTAACCTGGGAAAAC 58.841 34.615 0.00 0.00 0.00 2.43
2719 2772 8.121086 GGAAAACTGTCAAACTAAGTTGTCTAC 58.879 37.037 5.26 0.00 37.98 2.59
2732 2795 9.490083 ACTAAGTTGTCTACCATTTATCTAGGT 57.510 33.333 0.00 0.00 39.41 3.08
2833 2896 2.520465 ATCCACGCTCACCGCATTCA 62.520 55.000 0.00 0.00 41.76 2.57
2834 2897 2.108514 CCACGCTCACCGCATTCAT 61.109 57.895 0.00 0.00 41.76 2.57
2837 2900 0.881118 ACGCTCACCGCATTCATTTT 59.119 45.000 0.00 0.00 41.76 1.82
2876 2957 8.955388 TCCTCGAAATCATTCAATATTGTTTCA 58.045 29.630 19.95 11.30 35.15 2.69
2896 2977 7.011295 TGTTTCAAGATTTTGCTGTTGATTTCC 59.989 33.333 0.00 0.00 34.21 3.13
2909 2990 1.464608 TGATTTCCGAGCTGCGAAAAG 59.535 47.619 8.46 0.00 44.57 2.27
2919 3000 2.127251 GCTGCGAAAAGGAAAACCAAG 58.873 47.619 0.00 0.00 0.00 3.61
2928 3009 5.878332 AAAGGAAAACCAAGCACTTTTTG 57.122 34.783 0.00 0.00 0.00 2.44
2936 3017 8.785329 AAAACCAAGCACTTTTTGAAAATCTA 57.215 26.923 0.00 0.00 0.00 1.98
2939 3020 8.424274 ACCAAGCACTTTTTGAAAATCTAAAG 57.576 30.769 0.00 0.00 34.58 1.85
3032 3265 6.286758 GCCATTTCAGAATCTAGACTCATCA 58.713 40.000 3.70 0.00 0.00 3.07
3034 3267 6.420306 CCATTTCAGAATCTAGACTCATCACG 59.580 42.308 3.70 0.00 0.00 4.35
3038 3271 5.066634 TCAGAATCTAGACTCATCACGAACC 59.933 44.000 3.70 0.00 0.00 3.62
3041 3274 5.860941 ATCTAGACTCATCACGAACCAAT 57.139 39.130 0.00 0.00 0.00 3.16
3048 3281 4.220821 ACTCATCACGAACCAATCTGTAGT 59.779 41.667 0.00 0.00 0.00 2.73
3061 3294 2.626785 TCTGTAGTTGGATGGTTGGGA 58.373 47.619 0.00 0.00 0.00 4.37
3064 3297 1.064685 GTAGTTGGATGGTTGGGAGGG 60.065 57.143 0.00 0.00 0.00 4.30
3068 3301 0.419865 TGGATGGTTGGGAGGGTAGA 59.580 55.000 0.00 0.00 0.00 2.59
3076 3309 2.638363 GTTGGGAGGGTAGATGGTATCC 59.362 54.545 0.00 0.00 0.00 2.59
3078 3311 1.555058 GGGAGGGTAGATGGTATCCCC 60.555 61.905 0.00 0.00 40.50 4.81
3090 3323 3.053077 TGGTATCCCCAACCTATCAAGG 58.947 50.000 0.00 0.00 43.36 3.61
3103 3336 3.264450 CCTATCAAGGTCCAAGTTCTGGT 59.736 47.826 0.00 0.00 39.15 4.00
3107 3340 0.398318 AGGTCCAAGTTCTGGTGCTC 59.602 55.000 0.00 0.00 46.51 4.26
3109 3342 1.301716 TCCAAGTTCTGGTGCTCGC 60.302 57.895 0.00 0.00 46.51 5.03
3116 3349 3.347216 AGTTCTGGTGCTCGCATTATTT 58.653 40.909 0.00 0.00 0.00 1.40
3157 3390 2.267426 TCGACAATATGCGTTCAGTGG 58.733 47.619 0.00 0.00 0.00 4.00
3161 3394 1.942657 CAATATGCGTTCAGTGGGAGG 59.057 52.381 0.00 0.00 0.00 4.30
3165 3398 1.079750 GCGTTCAGTGGGAGGAGAC 60.080 63.158 0.00 0.00 0.00 3.36
3193 3426 2.021457 TCGATTACGAGGCATCTGTGA 58.979 47.619 0.00 0.00 43.81 3.58
3205 3438 3.126514 GGCATCTGTGATGACTTTGTCAG 59.873 47.826 11.25 0.00 46.04 3.51
3225 3458 5.631512 GTCAGTCTCAAGATAATATGTCGGC 59.368 44.000 0.00 0.00 0.00 5.54
3231 3464 5.773575 TCAAGATAATATGTCGGCTCAGTC 58.226 41.667 0.00 0.00 0.00 3.51
3233 3466 5.637006 AGATAATATGTCGGCTCAGTCTC 57.363 43.478 0.00 0.00 0.00 3.36
3236 3469 1.300481 TATGTCGGCTCAGTCTCTCG 58.700 55.000 0.00 0.00 0.00 4.04
3239 3472 1.002502 TCGGCTCAGTCTCTCGGAA 60.003 57.895 0.00 0.00 0.00 4.30
3245 3478 1.543802 CTCAGTCTCTCGGAAGTGCTT 59.456 52.381 0.00 0.00 0.00 3.91
3246 3479 2.750166 CTCAGTCTCTCGGAAGTGCTTA 59.250 50.000 0.00 0.00 0.00 3.09
3249 3482 4.576873 TCAGTCTCTCGGAAGTGCTTATAG 59.423 45.833 0.00 0.00 0.00 1.31
3250 3483 3.886505 AGTCTCTCGGAAGTGCTTATAGG 59.113 47.826 0.00 0.00 0.00 2.57
3261 3494 2.898612 GTGCTTATAGGGGTAGGGTCTC 59.101 54.545 0.00 0.00 0.00 3.36
3262 3495 2.520980 TGCTTATAGGGGTAGGGTCTCA 59.479 50.000 0.00 0.00 0.00 3.27
3266 3506 2.376695 TAGGGGTAGGGTCTCATTCG 57.623 55.000 0.00 0.00 0.00 3.34
3269 3509 1.962100 GGGGTAGGGTCTCATTCGTAG 59.038 57.143 0.00 0.00 0.00 3.51
3282 3522 5.473846 TCTCATTCGTAGGGATGAGTGTATC 59.526 44.000 25.81 0.00 43.66 2.24
3294 3534 6.429078 GGGATGAGTGTATCCGCGTATATATA 59.571 42.308 4.92 0.00 46.19 0.86
3296 3536 7.802251 GGATGAGTGTATCCGCGTATATATAAC 59.198 40.741 4.92 3.74 37.48 1.89
3297 3537 7.019774 TGAGTGTATCCGCGTATATATAACC 57.980 40.000 4.92 0.00 0.00 2.85
3304 3544 2.479049 CGCGTATATATAACCGCCTGCT 60.479 50.000 17.29 0.00 42.99 4.24
3308 3548 4.142447 CGTATATATAACCGCCTGCTGTCT 60.142 45.833 0.00 0.00 0.00 3.41
3312 3552 3.944055 ATAACCGCCTGCTGTCTATAG 57.056 47.619 0.00 0.00 0.00 1.31
3321 3561 5.465935 GCCTGCTGTCTATAGTGTATTCTC 58.534 45.833 0.00 0.00 0.00 2.87
3326 3566 9.371136 CTGCTGTCTATAGTGTATTCTCAAAAA 57.629 33.333 0.00 0.00 0.00 1.94
3351 3591 8.621532 AAAAAGTCTACACTCAGCAATTCATA 57.378 30.769 0.00 0.00 29.93 2.15
3352 3592 8.798859 AAAAGTCTACACTCAGCAATTCATAT 57.201 30.769 0.00 0.00 29.93 1.78
3353 3593 8.798859 AAAGTCTACACTCAGCAATTCATATT 57.201 30.769 0.00 0.00 29.93 1.28
3354 3594 9.890629 AAAGTCTACACTCAGCAATTCATATTA 57.109 29.630 0.00 0.00 29.93 0.98
3389 3629 5.687166 ATAGTTATTCGGAAACACCCAGA 57.313 39.130 0.00 0.00 34.64 3.86
3424 3664 3.640967 CCAATGGACCTGAACTGGAAAAA 59.359 43.478 0.00 0.00 0.00 1.94
3481 3721 9.836864 AAAAATAGCCAAAAGAATCTTGAAACT 57.163 25.926 0.00 0.00 0.00 2.66
3482 3722 9.836864 AAAATAGCCAAAAGAATCTTGAAACTT 57.163 25.926 0.00 0.00 0.00 2.66
3483 3723 9.836864 AAATAGCCAAAAGAATCTTGAAACTTT 57.163 25.926 0.00 0.00 34.67 2.66
3484 3724 9.836864 AATAGCCAAAAGAATCTTGAAACTTTT 57.163 25.926 0.00 0.00 41.26 2.27
3485 3725 7.776933 AGCCAAAAGAATCTTGAAACTTTTC 57.223 32.000 0.00 0.00 39.48 2.29
3494 3734 9.801873 AGAATCTTGAAACTTTTCGAAATCAAA 57.198 25.926 19.62 13.44 40.01 2.69
3538 3778 2.032426 GTGAAAAGTTTCGCGGAGGAAA 59.968 45.455 6.13 0.00 40.01 3.13
3540 3780 3.316868 TGAAAAGTTTCGCGGAGGAAAAT 59.683 39.130 6.13 0.00 40.01 1.82
3546 3786 3.552604 TTCGCGGAGGAAAATTTTGAG 57.447 42.857 8.47 0.00 0.00 3.02
3553 3793 4.938226 CGGAGGAAAATTTTGAGCTACTCT 59.062 41.667 8.47 0.00 0.00 3.24
3599 3840 8.158132 TGTCAATACAAAAGGTGTGGATAGTAA 58.842 33.333 0.00 0.00 41.89 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 2.494870 AGGATTGTTCCATTTGCAGAGC 59.505 45.455 0.00 0.00 45.30 4.09
76 77 3.760151 TCAGGATTGTTCCATTTGCAGAG 59.240 43.478 0.00 0.00 45.30 3.35
95 96 4.164988 ACTTTTCCTCCCTACATGGATCAG 59.835 45.833 0.00 0.00 38.35 2.90
96 97 4.111577 ACTTTTCCTCCCTACATGGATCA 58.888 43.478 0.00 0.00 38.35 2.92
99 100 5.550403 AGTAAACTTTTCCTCCCTACATGGA 59.450 40.000 0.00 0.00 38.35 3.41
107 108 4.541973 TCGGTAGTAAACTTTTCCTCCC 57.458 45.455 0.00 0.00 0.00 4.30
124 126 4.873746 TCTGAATTCTCAACTCTTCGGT 57.126 40.909 7.05 0.00 0.00 4.69
126 128 7.221838 GGACTATTCTGAATTCTCAACTCTTCG 59.778 40.741 8.38 0.00 0.00 3.79
129 131 7.038729 TGTGGACTATTCTGAATTCTCAACTCT 60.039 37.037 8.38 0.00 0.00 3.24
134 136 6.611613 ACTGTGGACTATTCTGAATTCTCA 57.388 37.500 8.38 4.83 0.00 3.27
174 176 3.254060 CTGTCTACTACATGTGTGTGGC 58.746 50.000 9.11 6.63 40.17 5.01
182 184 7.375834 TCTTTGGTGTTACTGTCTACTACATG 58.624 38.462 0.00 0.00 37.50 3.21
185 187 7.211966 TCTCTTTGGTGTTACTGTCTACTAC 57.788 40.000 0.00 0.00 0.00 2.73
186 188 8.418597 AATCTCTTTGGTGTTACTGTCTACTA 57.581 34.615 0.00 0.00 0.00 1.82
187 189 6.919775 ATCTCTTTGGTGTTACTGTCTACT 57.080 37.500 0.00 0.00 0.00 2.57
239 241 7.344871 AGGGCTAGTGTATATGTATAATGGGTC 59.655 40.741 0.00 0.00 0.00 4.46
247 249 6.769512 CCAAACAGGGCTAGTGTATATGTAT 58.230 40.000 0.00 0.00 0.00 2.29
248 250 6.169557 CCAAACAGGGCTAGTGTATATGTA 57.830 41.667 0.00 0.00 0.00 2.29
276 278 6.601332 TCTGAATTATACTGGGAAATGGGAC 58.399 40.000 0.00 0.00 0.00 4.46
277 279 6.840090 TCTGAATTATACTGGGAAATGGGA 57.160 37.500 0.00 0.00 0.00 4.37
278 280 7.062957 ACTTCTGAATTATACTGGGAAATGGG 58.937 38.462 0.00 0.00 0.00 4.00
279 281 8.408601 CAACTTCTGAATTATACTGGGAAATGG 58.591 37.037 0.00 0.00 0.00 3.16
280 282 9.177608 TCAACTTCTGAATTATACTGGGAAATG 57.822 33.333 0.00 0.00 0.00 2.32
281 283 9.927081 ATCAACTTCTGAATTATACTGGGAAAT 57.073 29.630 0.00 0.00 37.67 2.17
285 287 9.442047 GGATATCAACTTCTGAATTATACTGGG 57.558 37.037 4.83 0.00 37.67 4.45
291 293 8.854117 GCCAAAGGATATCAACTTCTGAATTAT 58.146 33.333 4.83 0.00 37.67 1.28
292 294 7.285401 GGCCAAAGGATATCAACTTCTGAATTA 59.715 37.037 4.83 0.00 37.67 1.40
293 295 6.097412 GGCCAAAGGATATCAACTTCTGAATT 59.903 38.462 4.83 0.00 37.67 2.17
294 296 5.595952 GGCCAAAGGATATCAACTTCTGAAT 59.404 40.000 4.83 0.00 37.67 2.57
299 301 2.618709 CGGGCCAAAGGATATCAACTTC 59.381 50.000 4.39 0.00 0.00 3.01
301 303 1.564348 ACGGGCCAAAGGATATCAACT 59.436 47.619 4.39 0.00 0.00 3.16
302 304 2.052782 ACGGGCCAAAGGATATCAAC 57.947 50.000 4.39 0.00 0.00 3.18
303 305 3.935818 TTACGGGCCAAAGGATATCAA 57.064 42.857 4.39 0.00 0.00 2.57
308 310 3.699538 GAGAAATTTACGGGCCAAAGGAT 59.300 43.478 4.39 0.00 0.00 3.24
320 322 3.078837 TGCAAGGTCCGGAGAAATTTAC 58.921 45.455 3.06 0.00 0.00 2.01
322 324 2.286365 TGCAAGGTCCGGAGAAATTT 57.714 45.000 3.06 0.00 0.00 1.82
393 408 5.124297 GGCTGCAGCATTTTAAAATGGATTT 59.876 36.000 37.63 3.67 44.54 2.17
613 642 1.663388 GTGTGTGCGACGGTCATGA 60.663 57.895 9.10 0.00 0.00 3.07
621 650 2.048127 GGAGGAGGTGTGTGCGAC 60.048 66.667 0.00 0.00 0.00 5.19
679 712 1.675007 TCTCTGTCTGGGAGGAGAGA 58.325 55.000 0.00 0.00 38.89 3.10
681 714 1.283613 GTCTCTCTGTCTGGGAGGAGA 59.716 57.143 6.76 0.00 34.29 3.71
683 716 1.005332 CTGTCTCTCTGTCTGGGAGGA 59.995 57.143 6.76 0.00 0.00 3.71
684 717 1.005332 TCTGTCTCTCTGTCTGGGAGG 59.995 57.143 6.76 0.00 0.00 4.30
686 719 1.988846 TCTCTGTCTCTCTGTCTGGGA 59.011 52.381 0.00 0.00 0.00 4.37
687 720 2.368439 CTCTCTGTCTCTCTGTCTGGG 58.632 57.143 0.00 0.00 0.00 4.45
688 721 2.368439 CCTCTCTGTCTCTCTGTCTGG 58.632 57.143 0.00 0.00 0.00 3.86
693 726 1.392589 GCTCCCTCTCTGTCTCTCTG 58.607 60.000 0.00 0.00 0.00 3.35
697 730 0.398381 ATGGGCTCCCTCTCTGTCTC 60.398 60.000 6.50 0.00 36.94 3.36
708 741 3.118531 ACTGGATATGGATATGGGCTCC 58.881 50.000 0.00 0.00 0.00 4.70
720 753 1.341209 TCGCAGGCAGTACTGGATATG 59.659 52.381 23.95 0.00 38.90 1.78
738 771 2.250485 GCAGCAGCACAAGTGTCG 59.750 61.111 0.00 0.00 41.58 4.35
766 799 2.341176 GCACAAGGCTGGCCAAAG 59.659 61.111 7.01 0.00 40.25 2.77
829 862 2.507992 GTCACTGCGCGAGATGCT 60.508 61.111 12.10 0.00 43.27 3.79
889 922 3.127589 TCCATGGCGATGTAATGTAACG 58.872 45.455 6.96 0.00 0.00 3.18
930 963 2.665603 GCACTCACTCCCAGTCCC 59.334 66.667 0.00 0.00 0.00 4.46
931 964 1.915769 AGGCACTCACTCCCAGTCC 60.916 63.158 0.00 0.00 0.00 3.85
932 965 3.798758 AGGCACTCACTCCCAGTC 58.201 61.111 0.00 0.00 0.00 3.51
967 1000 4.272504 CGGTCACACAGAAAGCTTTCTTTA 59.727 41.667 33.95 17.23 44.70 1.85
971 1004 1.334149 GCGGTCACACAGAAAGCTTTC 60.334 52.381 28.21 28.21 37.45 2.62
1077 1111 5.979517 CCAACCAAGAACTCATCAAGAAAAC 59.020 40.000 0.00 0.00 0.00 2.43
1164 1210 2.280797 GCCCACACAAGAGCACGA 60.281 61.111 0.00 0.00 0.00 4.35
1185 1231 4.142513 CCAGCAAGAAATGGAAGAAGCTAC 60.143 45.833 0.00 0.00 39.02 3.58
1205 1251 2.606725 GCAGAGATCAACACGAATCCAG 59.393 50.000 0.00 0.00 0.00 3.86
1227 1273 0.179089 CTCATCTTCGGCACCCTCAG 60.179 60.000 0.00 0.00 0.00 3.35
1228 1274 1.900351 CTCATCTTCGGCACCCTCA 59.100 57.895 0.00 0.00 0.00 3.86
1230 1276 2.586792 GCTCATCTTCGGCACCCT 59.413 61.111 0.00 0.00 0.00 4.34
1232 1278 2.125512 ACGCTCATCTTCGGCACC 60.126 61.111 0.00 0.00 0.00 5.01
1233 1279 3.084579 CACGCTCATCTTCGGCAC 58.915 61.111 0.00 0.00 0.00 5.01
1234 1280 2.815211 GCACGCTCATCTTCGGCA 60.815 61.111 0.00 0.00 0.00 5.69
1280 1326 1.516386 CGGGTCCGTGAAGATGTCG 60.516 63.158 0.55 0.00 34.35 4.35
1529 1575 4.373116 GCGTCGGACTGGAGGCAA 62.373 66.667 6.57 0.00 44.79 4.52
2219 2265 1.586564 CCTCACGAGAATCCGCGTC 60.587 63.158 4.92 0.00 45.34 5.19
2545 2595 3.188460 CCACTACATAAGTTTTGCACGCT 59.812 43.478 0.00 0.00 35.76 5.07
2552 2602 7.230510 TCACAGAATTGCCACTACATAAGTTTT 59.769 33.333 0.00 0.00 35.76 2.43
2553 2603 6.714810 TCACAGAATTGCCACTACATAAGTTT 59.285 34.615 0.00 0.00 35.76 2.66
2581 2631 1.159285 CTCTCAATTGACGCCTGCAA 58.841 50.000 3.38 0.00 0.00 4.08
2583 2633 1.661341 ATCTCTCAATTGACGCCTGC 58.339 50.000 3.38 0.00 0.00 4.85
2586 2636 8.017946 GGATAATTTAATCTCTCAATTGACGCC 58.982 37.037 3.38 0.00 0.00 5.68
2609 2659 0.756294 TCGCCACAATACATCCGGAT 59.244 50.000 12.38 12.38 0.00 4.18
2670 2722 5.163519 CCCAGGTTAATTAATGCAACTCCTG 60.164 44.000 16.40 16.40 39.40 3.86
2685 2737 5.265989 AGTTTGACAGTTTTCCCAGGTTAA 58.734 37.500 0.00 0.00 0.00 2.01
2686 2738 4.862371 AGTTTGACAGTTTTCCCAGGTTA 58.138 39.130 0.00 0.00 0.00 2.85
2687 2739 3.708451 AGTTTGACAGTTTTCCCAGGTT 58.292 40.909 0.00 0.00 0.00 3.50
2688 2740 3.382083 AGTTTGACAGTTTTCCCAGGT 57.618 42.857 0.00 0.00 0.00 4.00
2699 2751 7.730364 AATGGTAGACAACTTAGTTTGACAG 57.270 36.000 0.00 0.00 0.00 3.51
2735 2798 7.095607 CCCGCTAATATGCTTTCTACTTTGTAG 60.096 40.741 0.00 0.00 0.00 2.74
2742 2805 4.267349 TCCCCGCTAATATGCTTTCTAC 57.733 45.455 0.00 0.00 0.00 2.59
2745 2808 3.623510 GCTATCCCCGCTAATATGCTTTC 59.376 47.826 0.00 0.00 0.00 2.62
2746 2809 3.264450 AGCTATCCCCGCTAATATGCTTT 59.736 43.478 0.00 0.00 35.63 3.51
2754 2817 1.412710 CAACTGAGCTATCCCCGCTAA 59.587 52.381 0.00 0.00 37.96 3.09
2876 2957 5.452078 TCGGAAATCAACAGCAAAATCTT 57.548 34.783 0.00 0.00 0.00 2.40
2896 2977 1.663161 GGTTTTCCTTTTCGCAGCTCG 60.663 52.381 0.00 0.00 36.89 5.03
2909 2990 5.871465 TTTCAAAAAGTGCTTGGTTTTCC 57.129 34.783 0.00 0.00 41.14 3.13
2936 3017 5.697067 ACTCGGGAGATAGAGTACATCTTT 58.303 41.667 2.08 0.00 44.93 2.52
2939 3020 6.394025 AAAACTCGGGAGATAGAGTACATC 57.606 41.667 2.08 0.00 45.91 3.06
2966 3048 9.448438 ACATTAGTTTGTAGCTCATGTGATAAA 57.552 29.630 0.00 0.00 31.81 1.40
2967 3049 9.448438 AACATTAGTTTGTAGCTCATGTGATAA 57.552 29.630 0.00 0.00 32.92 1.75
2968 3050 9.448438 AAACATTAGTTTGTAGCTCATGTGATA 57.552 29.630 0.00 0.00 45.79 2.15
2990 3072 2.228925 GGCGGGGTGTTAGTTAAAACA 58.771 47.619 0.00 0.00 37.03 2.83
3000 3082 0.178975 TTCTGAAATGGCGGGGTGTT 60.179 50.000 0.00 0.00 0.00 3.32
3032 3265 4.253685 CATCCAACTACAGATTGGTTCGT 58.746 43.478 3.81 0.00 45.83 3.85
3034 3267 4.589908 ACCATCCAACTACAGATTGGTTC 58.410 43.478 3.81 0.00 45.83 3.62
3038 3271 3.696051 CCCAACCATCCAACTACAGATTG 59.304 47.826 0.00 0.00 0.00 2.67
3041 3274 2.571653 CTCCCAACCATCCAACTACAGA 59.428 50.000 0.00 0.00 0.00 3.41
3048 3281 1.203505 TCTACCCTCCCAACCATCCAA 60.204 52.381 0.00 0.00 0.00 3.53
3051 3284 1.421646 CCATCTACCCTCCCAACCATC 59.578 57.143 0.00 0.00 0.00 3.51
3103 3336 9.236691 GAAATAAATTCAGAAATAATGCGAGCA 57.763 29.630 0.00 0.00 37.99 4.26
3131 3364 4.904116 TGAACGCATATTGTCGAAAATCC 58.096 39.130 3.50 0.00 0.00 3.01
3132 3365 5.449113 CACTGAACGCATATTGTCGAAAATC 59.551 40.000 3.50 0.00 0.00 2.17
3136 3369 2.670905 CCACTGAACGCATATTGTCGAA 59.329 45.455 0.00 0.00 0.00 3.71
3137 3370 2.267426 CCACTGAACGCATATTGTCGA 58.733 47.619 0.00 0.00 0.00 4.20
3145 3378 0.904865 TCTCCTCCCACTGAACGCAT 60.905 55.000 0.00 0.00 0.00 4.73
3177 3410 2.760650 AGTCATCACAGATGCCTCGTAA 59.239 45.455 2.19 0.00 0.00 3.18
3205 3438 5.773575 TGAGCCGACATATTATCTTGAGAC 58.226 41.667 0.00 0.00 0.00 3.36
3208 3441 5.536538 AGACTGAGCCGACATATTATCTTGA 59.463 40.000 0.00 0.00 0.00 3.02
3209 3442 5.777802 AGACTGAGCCGACATATTATCTTG 58.222 41.667 0.00 0.00 0.00 3.02
3215 3448 2.292016 CGAGAGACTGAGCCGACATATT 59.708 50.000 0.00 0.00 0.00 1.28
3221 3454 1.002502 TTCCGAGAGACTGAGCCGA 60.003 57.895 0.00 0.00 0.00 5.54
3225 3458 1.173043 AGCACTTCCGAGAGACTGAG 58.827 55.000 0.00 0.00 0.00 3.35
3231 3464 2.297597 CCCCTATAAGCACTTCCGAGAG 59.702 54.545 0.00 0.00 0.00 3.20
3233 3466 2.040178 ACCCCTATAAGCACTTCCGAG 58.960 52.381 0.00 0.00 0.00 4.63
3236 3469 2.638363 CCCTACCCCTATAAGCACTTCC 59.362 54.545 0.00 0.00 0.00 3.46
3239 3472 2.523138 AGACCCTACCCCTATAAGCACT 59.477 50.000 0.00 0.00 0.00 4.40
3245 3478 3.400322 ACGAATGAGACCCTACCCCTATA 59.600 47.826 0.00 0.00 0.00 1.31
3246 3479 2.179424 ACGAATGAGACCCTACCCCTAT 59.821 50.000 0.00 0.00 0.00 2.57
3249 3482 1.962100 CTACGAATGAGACCCTACCCC 59.038 57.143 0.00 0.00 0.00 4.95
3250 3483 1.962100 CCTACGAATGAGACCCTACCC 59.038 57.143 0.00 0.00 0.00 3.69
3261 3494 4.616143 CGGATACACTCATCCCTACGAATG 60.616 50.000 0.00 0.00 41.38 2.67
3262 3495 3.506455 CGGATACACTCATCCCTACGAAT 59.494 47.826 0.00 0.00 41.38 3.34
3266 3506 1.068472 CGCGGATACACTCATCCCTAC 60.068 57.143 0.00 0.00 41.38 3.18
3269 3509 0.956633 TACGCGGATACACTCATCCC 59.043 55.000 12.47 0.00 41.38 3.85
3294 3534 1.137086 CACTATAGACAGCAGGCGGTT 59.863 52.381 6.78 0.00 0.00 4.44
3296 3536 0.747255 ACACTATAGACAGCAGGCGG 59.253 55.000 6.78 0.00 0.00 6.13
3297 3537 3.924918 ATACACTATAGACAGCAGGCG 57.075 47.619 6.78 0.00 0.00 5.52
3326 3566 6.942532 TGAATTGCTGAGTGTAGACTTTTT 57.057 33.333 0.00 0.00 30.16 1.94
3369 3609 3.307480 CCTCTGGGTGTTTCCGAATAACT 60.307 47.826 0.00 0.00 37.00 2.24
3455 3695 9.836864 AGTTTCAAGATTCTTTTGGCTATTTTT 57.163 25.926 0.00 0.00 0.00 1.94
3456 3696 9.836864 AAGTTTCAAGATTCTTTTGGCTATTTT 57.163 25.926 0.00 0.00 0.00 1.82
3460 3700 7.647715 CGAAAAGTTTCAAGATTCTTTTGGCTA 59.352 33.333 13.38 0.00 39.27 3.93
3461 3701 6.476706 CGAAAAGTTTCAAGATTCTTTTGGCT 59.523 34.615 13.38 0.00 39.27 4.75
3462 3702 6.475402 TCGAAAAGTTTCAAGATTCTTTTGGC 59.525 34.615 13.38 0.00 39.27 4.52
3463 3703 7.985634 TCGAAAAGTTTCAAGATTCTTTTGG 57.014 32.000 13.38 12.51 39.27 3.28
3466 3706 9.801873 TGATTTCGAAAAGTTTCAAGATTCTTT 57.198 25.926 15.66 0.00 37.01 2.52
3467 3707 9.801873 TTGATTTCGAAAAGTTTCAAGATTCTT 57.198 25.926 15.66 0.00 37.01 2.52
3468 3708 9.801873 TTTGATTTCGAAAAGTTTCAAGATTCT 57.198 25.926 15.66 0.00 37.01 2.40
3469 3709 9.835315 GTTTGATTTCGAAAAGTTTCAAGATTC 57.165 29.630 15.66 3.85 37.01 2.52
3470 3710 9.364989 TGTTTGATTTCGAAAAGTTTCAAGATT 57.635 25.926 15.66 0.00 37.01 2.40
3471 3711 8.925161 TGTTTGATTTCGAAAAGTTTCAAGAT 57.075 26.923 15.66 0.00 37.01 2.40
3472 3712 8.806634 CATGTTTGATTTCGAAAAGTTTCAAGA 58.193 29.630 15.66 10.43 37.01 3.02
3473 3713 8.806634 TCATGTTTGATTTCGAAAAGTTTCAAG 58.193 29.630 15.66 8.26 37.01 3.02
3474 3714 8.694975 TCATGTTTGATTTCGAAAAGTTTCAA 57.305 26.923 15.66 16.30 37.01 2.69
3475 3715 8.870160 ATCATGTTTGATTTCGAAAAGTTTCA 57.130 26.923 15.66 11.07 39.64 2.69
3504 3744 8.440833 GCGAAACTTTTCACACTAGTGTAATAT 58.559 33.333 27.48 9.19 46.01 1.28
3515 3755 1.333791 CCTCCGCGAAACTTTTCACAC 60.334 52.381 8.23 0.00 37.01 3.82
3525 3765 3.855524 GCTCAAAATTTTCCTCCGCGAAA 60.856 43.478 8.23 0.00 0.00 3.46
3528 3768 1.200020 AGCTCAAAATTTTCCTCCGCG 59.800 47.619 0.00 0.00 0.00 6.46
3538 3778 3.523564 TGGCCCTAGAGTAGCTCAAAATT 59.476 43.478 0.00 0.00 32.06 1.82
3540 3780 2.546899 TGGCCCTAGAGTAGCTCAAAA 58.453 47.619 0.00 0.00 32.06 2.44
3567 3807 7.493971 TCCACACCTTTTGTATTGACAATTTTG 59.506 33.333 5.89 0.00 44.96 2.44
3576 3817 8.561738 AGTTACTATCCACACCTTTTGTATTG 57.438 34.615 0.00 0.00 35.67 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.