Multiple sequence alignment - TraesCS2B01G323300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G323300 chr2B 100.000 4052 0 0 1 4052 461985067 461981016 0.000000e+00 7483.0
1 TraesCS2B01G323300 chr2B 76.543 162 33 5 553 712 186948689 186948847 2.600000e-12 84.2
2 TraesCS2B01G323300 chr2A 97.398 3267 71 4 768 4033 527464264 527461011 0.000000e+00 5550.0
3 TraesCS2B01G323300 chr2A 91.228 228 16 4 553 777 527466294 527466068 1.410000e-79 307.0
4 TraesCS2B01G323300 chr2A 97.122 139 3 1 1 138 13908226 13908364 2.440000e-57 233.0
5 TraesCS2B01G323300 chr2D 96.815 3171 85 4 864 4033 390735888 390732733 0.000000e+00 5282.0
6 TraesCS2B01G323300 chr2D 93.884 327 15 4 553 879 390895842 390895521 4.710000e-134 488.0
7 TraesCS2B01G323300 chr2D 96.575 146 3 2 1 145 135881272 135881128 1.460000e-59 241.0
8 TraesCS2B01G323300 chr6D 91.163 430 21 1 130 542 749727 750156 5.880000e-158 568.0
9 TraesCS2B01G323300 chr1D 90.909 429 23 5 130 542 303022908 303023336 2.730000e-156 562.0
10 TraesCS2B01G323300 chr7D 90.115 435 27 5 130 548 471538988 471538554 5.920000e-153 551.0
11 TraesCS2B01G323300 chr7D 95.333 150 4 3 1 149 584527584 584527731 6.770000e-58 235.0
12 TraesCS2B01G323300 chr7D 97.794 136 2 1 1 136 148366737 148366871 2.440000e-57 233.0
13 TraesCS2B01G323300 chr5D 89.954 438 27 1 130 550 12309887 12310324 2.130000e-152 549.0
14 TraesCS2B01G323300 chr5D 89.450 436 29 8 130 548 87195543 87195978 5.960000e-148 534.0
15 TraesCS2B01G323300 chr5B 89.559 431 27 8 130 542 352392850 352393280 7.710000e-147 531.0
16 TraesCS2B01G323300 chr5B 88.073 436 35 7 130 548 352395314 352394879 6.050000e-138 501.0
17 TraesCS2B01G323300 chr3B 88.837 430 31 7 130 542 416516902 416517331 2.790000e-141 512.0
18 TraesCS2B01G323300 chr4B 88.303 436 33 9 130 548 13110977 13110543 1.300000e-139 507.0
19 TraesCS2B01G323300 chr4A 99.270 137 1 0 1 137 631123332 631123468 8.700000e-62 248.0
20 TraesCS2B01G323300 chr4D 98.551 138 2 0 1 138 450364939 450365076 1.130000e-60 244.0
21 TraesCS2B01G323300 chr6B 94.771 153 5 3 1 152 43103399 43103249 6.770000e-58 235.0
22 TraesCS2B01G323300 chr6A 92.638 163 8 4 1 163 452151003 452150845 8.760000e-57 231.0
23 TraesCS2B01G323300 chr3D 92.121 165 9 3 1 164 546394156 546393995 3.150000e-56 230.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G323300 chr2B 461981016 461985067 4051 True 7483.0 7483 100.000 1 4052 1 chr2B.!!$R1 4051
1 TraesCS2B01G323300 chr2A 527461011 527466294 5283 True 2928.5 5550 94.313 553 4033 2 chr2A.!!$R1 3480
2 TraesCS2B01G323300 chr2D 390732733 390735888 3155 True 5282.0 5282 96.815 864 4033 1 chr2D.!!$R2 3169

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
358 359 0.099436 GGATGCATTGTTCCGAGCAC 59.901 55.0 0.0 0.0 40.14 4.40 F
467 468 0.107017 ATCCATCGGTTCTGGCTTGG 60.107 55.0 0.0 0.0 33.56 3.61 F
2010 3827 0.036952 ATGCTCAGGTGGTGTTCTCG 60.037 55.0 0.0 0.0 0.00 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1598 3415 0.036010 CATTGCCTCGAACACCCTCT 60.036 55.0 0.0 0.0 0.00 3.69 R
2073 3890 0.395862 TAAGTGCCTCCTCCTCCTCG 60.396 60.0 0.0 0.0 0.00 4.63 R
3161 4978 0.103572 CCAAGCAAAACTGCTGCACT 59.896 50.0 0.0 0.0 45.54 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.883142 TTTGTCTATGTATTCACACATGTATCA 57.117 29.630 0.00 0.00 39.46 2.15
28 29 9.480053 TGTCTATGTATTCACACATGTATCATG 57.520 33.333 0.00 7.99 39.46 3.07
29 30 9.481340 GTCTATGTATTCACACATGTATCATGT 57.519 33.333 9.21 9.21 39.46 3.21
33 34 7.984391 TGTATTCACACATGTATCATGTTTCC 58.016 34.615 11.89 0.00 0.00 3.13
34 35 5.544136 TTCACACATGTATCATGTTTCCG 57.456 39.130 11.89 4.94 0.00 4.30
35 36 3.938334 TCACACATGTATCATGTTTCCGG 59.062 43.478 11.89 0.00 0.00 5.14
36 37 3.689161 CACACATGTATCATGTTTCCGGT 59.311 43.478 11.89 5.17 0.00 5.28
37 38 4.155826 CACACATGTATCATGTTTCCGGTT 59.844 41.667 11.89 0.00 0.00 4.44
38 39 5.352846 CACACATGTATCATGTTTCCGGTTA 59.647 40.000 11.89 0.00 0.00 2.85
39 40 5.941058 ACACATGTATCATGTTTCCGGTTAA 59.059 36.000 11.89 0.00 0.00 2.01
40 41 6.601613 ACACATGTATCATGTTTCCGGTTAAT 59.398 34.615 11.89 0.00 0.00 1.40
41 42 7.771361 ACACATGTATCATGTTTCCGGTTAATA 59.229 33.333 11.89 0.00 0.00 0.98
42 43 8.067784 CACATGTATCATGTTTCCGGTTAATAC 58.932 37.037 11.89 2.60 0.00 1.89
43 44 7.771361 ACATGTATCATGTTTCCGGTTAATACA 59.229 33.333 0.00 7.97 34.10 2.29
44 45 8.616942 CATGTATCATGTTTCCGGTTAATACAA 58.383 33.333 0.00 0.00 33.52 2.41
45 46 8.740123 TGTATCATGTTTCCGGTTAATACAAT 57.260 30.769 0.00 0.00 0.00 2.71
46 47 9.179909 TGTATCATGTTTCCGGTTAATACAATT 57.820 29.630 0.00 0.00 0.00 2.32
47 48 9.659830 GTATCATGTTTCCGGTTAATACAATTC 57.340 33.333 0.00 0.00 0.00 2.17
48 49 7.931578 TCATGTTTCCGGTTAATACAATTCT 57.068 32.000 0.00 0.00 0.00 2.40
49 50 9.621629 ATCATGTTTCCGGTTAATACAATTCTA 57.378 29.630 0.00 0.00 0.00 2.10
50 51 9.104965 TCATGTTTCCGGTTAATACAATTCTAG 57.895 33.333 0.00 0.00 0.00 2.43
51 52 7.311364 TGTTTCCGGTTAATACAATTCTAGC 57.689 36.000 0.00 0.00 0.00 3.42
52 53 6.879993 TGTTTCCGGTTAATACAATTCTAGCA 59.120 34.615 0.00 0.00 0.00 3.49
53 54 7.554835 TGTTTCCGGTTAATACAATTCTAGCAT 59.445 33.333 0.00 0.00 0.00 3.79
54 55 7.490962 TTCCGGTTAATACAATTCTAGCATG 57.509 36.000 0.00 0.00 0.00 4.06
55 56 6.822442 TCCGGTTAATACAATTCTAGCATGA 58.178 36.000 0.00 0.00 0.00 3.07
56 57 7.276658 TCCGGTTAATACAATTCTAGCATGAA 58.723 34.615 0.00 0.00 0.00 2.57
57 58 7.936847 TCCGGTTAATACAATTCTAGCATGAAT 59.063 33.333 0.00 0.00 38.19 2.57
58 59 9.214957 CCGGTTAATACAATTCTAGCATGAATA 57.785 33.333 0.00 0.00 35.82 1.75
130 131 5.449553 CCTTTAGGGCATATTTCCTTCAGT 58.550 41.667 0.00 0.00 34.75 3.41
131 132 6.601332 CCTTTAGGGCATATTTCCTTCAGTA 58.399 40.000 0.00 0.00 34.75 2.74
132 133 7.234355 CCTTTAGGGCATATTTCCTTCAGTAT 58.766 38.462 0.00 0.00 34.75 2.12
133 134 7.175641 CCTTTAGGGCATATTTCCTTCAGTATG 59.824 40.741 0.00 0.00 34.75 2.39
134 135 4.990526 AGGGCATATTTCCTTCAGTATGG 58.009 43.478 0.00 0.00 36.16 2.74
135 136 4.082125 GGGCATATTTCCTTCAGTATGGG 58.918 47.826 0.00 0.00 36.16 4.00
136 137 3.507622 GGCATATTTCCTTCAGTATGGGC 59.492 47.826 0.00 0.00 36.16 5.36
137 138 4.144297 GCATATTTCCTTCAGTATGGGCA 58.856 43.478 0.00 0.00 36.16 5.36
138 139 4.768968 GCATATTTCCTTCAGTATGGGCAT 59.231 41.667 0.00 0.00 36.16 4.40
139 140 5.105997 GCATATTTCCTTCAGTATGGGCATC 60.106 44.000 0.00 0.00 36.16 3.91
140 141 2.620251 TTCCTTCAGTATGGGCATCG 57.380 50.000 0.00 0.00 36.16 3.84
141 142 0.106708 TCCTTCAGTATGGGCATCGC 59.893 55.000 0.00 0.00 36.16 4.58
142 143 0.179048 CCTTCAGTATGGGCATCGCA 60.179 55.000 0.00 0.00 36.16 5.10
143 144 0.940126 CTTCAGTATGGGCATCGCAC 59.060 55.000 0.00 0.00 36.16 5.34
150 151 3.079131 TGGGCATCGCACATAGAAC 57.921 52.632 0.00 0.00 36.87 3.01
151 152 0.251634 TGGGCATCGCACATAGAACA 59.748 50.000 0.00 0.00 36.87 3.18
152 153 0.940126 GGGCATCGCACATAGAACAG 59.060 55.000 0.00 0.00 0.00 3.16
153 154 1.473257 GGGCATCGCACATAGAACAGA 60.473 52.381 0.00 0.00 0.00 3.41
154 155 2.487934 GGCATCGCACATAGAACAGAT 58.512 47.619 0.00 0.00 0.00 2.90
155 156 2.874701 GGCATCGCACATAGAACAGATT 59.125 45.455 0.00 0.00 0.00 2.40
156 157 3.303593 GGCATCGCACATAGAACAGATTG 60.304 47.826 0.00 0.00 0.00 2.67
157 158 3.847467 GCATCGCACATAGAACAGATTGC 60.847 47.826 0.00 0.00 0.00 3.56
158 159 2.971307 TCGCACATAGAACAGATTGCA 58.029 42.857 0.00 0.00 0.00 4.08
159 160 2.672874 TCGCACATAGAACAGATTGCAC 59.327 45.455 0.00 0.00 0.00 4.57
160 161 2.223112 CGCACATAGAACAGATTGCACC 60.223 50.000 0.00 0.00 0.00 5.01
161 162 2.749076 GCACATAGAACAGATTGCACCA 59.251 45.455 0.00 0.00 0.00 4.17
162 163 3.191162 GCACATAGAACAGATTGCACCAA 59.809 43.478 0.00 0.00 0.00 3.67
163 164 4.142315 GCACATAGAACAGATTGCACCAAT 60.142 41.667 0.00 0.00 36.72 3.16
164 165 5.337554 CACATAGAACAGATTGCACCAATG 58.662 41.667 0.00 0.00 33.90 2.82
165 166 5.012239 ACATAGAACAGATTGCACCAATGT 58.988 37.500 0.00 0.00 33.90 2.71
166 167 6.093909 CACATAGAACAGATTGCACCAATGTA 59.906 38.462 0.00 0.00 33.90 2.29
167 168 6.658816 ACATAGAACAGATTGCACCAATGTAA 59.341 34.615 0.00 0.00 33.90 2.41
168 169 5.633830 AGAACAGATTGCACCAATGTAAG 57.366 39.130 0.00 0.00 33.90 2.34
169 170 3.855689 ACAGATTGCACCAATGTAAGC 57.144 42.857 0.00 0.00 37.12 3.09
170 171 2.493278 ACAGATTGCACCAATGTAAGCC 59.507 45.455 0.00 0.00 37.52 4.35
171 172 2.756760 CAGATTGCACCAATGTAAGCCT 59.243 45.455 0.00 0.00 37.52 4.58
172 173 3.947196 CAGATTGCACCAATGTAAGCCTA 59.053 43.478 0.00 0.00 37.52 3.93
173 174 3.947834 AGATTGCACCAATGTAAGCCTAC 59.052 43.478 0.00 0.00 37.52 3.18
174 175 2.122783 TGCACCAATGTAAGCCTACC 57.877 50.000 0.00 0.00 0.00 3.18
175 176 1.352687 TGCACCAATGTAAGCCTACCA 59.647 47.619 0.00 0.00 0.00 3.25
176 177 1.743394 GCACCAATGTAAGCCTACCAC 59.257 52.381 0.00 0.00 0.00 4.16
177 178 2.618045 GCACCAATGTAAGCCTACCACT 60.618 50.000 0.00 0.00 0.00 4.00
178 179 3.686016 CACCAATGTAAGCCTACCACTT 58.314 45.455 0.00 0.00 0.00 3.16
179 180 4.079253 CACCAATGTAAGCCTACCACTTT 58.921 43.478 0.00 0.00 0.00 2.66
180 181 4.522789 CACCAATGTAAGCCTACCACTTTT 59.477 41.667 0.00 0.00 0.00 2.27
181 182 5.708230 CACCAATGTAAGCCTACCACTTTTA 59.292 40.000 0.00 0.00 0.00 1.52
182 183 5.944007 ACCAATGTAAGCCTACCACTTTTAG 59.056 40.000 0.00 0.00 0.00 1.85
183 184 5.357032 CCAATGTAAGCCTACCACTTTTAGG 59.643 44.000 0.00 0.00 39.45 2.69
190 191 3.545703 CCTACCACTTTTAGGCATGAGG 58.454 50.000 0.00 0.00 29.85 3.86
191 192 2.514458 ACCACTTTTAGGCATGAGGG 57.486 50.000 0.00 0.00 0.00 4.30
192 193 1.992557 ACCACTTTTAGGCATGAGGGA 59.007 47.619 0.00 0.00 0.00 4.20
193 194 2.378547 ACCACTTTTAGGCATGAGGGAA 59.621 45.455 0.00 0.00 0.00 3.97
194 195 3.019564 CCACTTTTAGGCATGAGGGAAG 58.980 50.000 0.00 0.00 0.00 3.46
195 196 2.424956 CACTTTTAGGCATGAGGGAAGC 59.575 50.000 0.00 0.00 0.00 3.86
199 200 4.249513 GGCATGAGGGAAGCCTTC 57.750 61.111 0.00 0.00 44.92 3.46
211 212 2.653115 GCCTTCCACTTTGGCAGC 59.347 61.111 0.00 0.00 45.46 5.25
212 213 1.905354 GCCTTCCACTTTGGCAGCT 60.905 57.895 0.00 0.00 45.46 4.24
213 214 1.962144 CCTTCCACTTTGGCAGCTG 59.038 57.895 10.11 10.11 37.47 4.24
214 215 1.530013 CCTTCCACTTTGGCAGCTGG 61.530 60.000 17.12 0.00 37.47 4.85
215 216 0.825010 CTTCCACTTTGGCAGCTGGT 60.825 55.000 17.12 0.62 37.47 4.00
216 217 0.396974 TTCCACTTTGGCAGCTGGTT 60.397 50.000 17.12 0.00 37.47 3.67
217 218 0.823356 TCCACTTTGGCAGCTGGTTC 60.823 55.000 17.12 0.00 37.47 3.62
218 219 1.283793 CACTTTGGCAGCTGGTTCG 59.716 57.895 17.12 0.00 0.00 3.95
219 220 2.256461 CTTTGGCAGCTGGTTCGC 59.744 61.111 17.12 0.00 0.00 4.70
220 221 3.273080 CTTTGGCAGCTGGTTCGCC 62.273 63.158 17.12 10.69 46.43 5.54
230 231 2.295904 TGGTTCGCCATCTGATCCA 58.704 52.632 0.00 0.00 43.56 3.41
231 232 0.178767 TGGTTCGCCATCTGATCCAG 59.821 55.000 0.00 0.00 43.56 3.86
232 233 1.162800 GGTTCGCCATCTGATCCAGC 61.163 60.000 0.00 0.00 37.19 4.85
233 234 0.462581 GTTCGCCATCTGATCCAGCA 60.463 55.000 0.00 0.00 0.00 4.41
234 235 0.179065 TTCGCCATCTGATCCAGCAG 60.179 55.000 0.00 0.00 37.24 4.24
252 253 3.043635 CAGATACTGCAATTGTGTCGC 57.956 47.619 7.40 3.24 32.11 5.19
253 254 2.674852 CAGATACTGCAATTGTGTCGCT 59.325 45.455 7.40 5.22 32.11 4.93
254 255 2.674852 AGATACTGCAATTGTGTCGCTG 59.325 45.455 7.40 0.00 32.11 5.18
255 256 2.162319 TACTGCAATTGTGTCGCTGA 57.838 45.000 7.40 0.00 0.00 4.26
256 257 1.527034 ACTGCAATTGTGTCGCTGAT 58.473 45.000 7.40 0.00 0.00 2.90
257 258 1.881973 ACTGCAATTGTGTCGCTGATT 59.118 42.857 7.40 0.00 0.00 2.57
258 259 2.247637 CTGCAATTGTGTCGCTGATTG 58.752 47.619 7.40 8.02 33.71 2.67
259 260 0.986992 GCAATTGTGTCGCTGATTGC 59.013 50.000 16.60 16.60 44.92 3.56
260 261 1.401931 GCAATTGTGTCGCTGATTGCT 60.402 47.619 20.86 0.00 46.56 3.91
261 262 2.923605 GCAATTGTGTCGCTGATTGCTT 60.924 45.455 20.86 0.00 46.56 3.91
262 263 3.311106 CAATTGTGTCGCTGATTGCTTT 58.689 40.909 0.00 0.00 40.11 3.51
263 264 2.686558 TTGTGTCGCTGATTGCTTTC 57.313 45.000 0.00 0.00 40.11 2.62
264 265 1.882912 TGTGTCGCTGATTGCTTTCT 58.117 45.000 0.00 0.00 40.11 2.52
265 266 2.221169 TGTGTCGCTGATTGCTTTCTT 58.779 42.857 0.00 0.00 40.11 2.52
266 267 3.398406 TGTGTCGCTGATTGCTTTCTTA 58.602 40.909 0.00 0.00 40.11 2.10
267 268 4.002982 TGTGTCGCTGATTGCTTTCTTAT 58.997 39.130 0.00 0.00 40.11 1.73
268 269 4.142838 TGTGTCGCTGATTGCTTTCTTATG 60.143 41.667 0.00 0.00 40.11 1.90
269 270 3.374988 TGTCGCTGATTGCTTTCTTATGG 59.625 43.478 0.00 0.00 40.11 2.74
270 271 3.623060 GTCGCTGATTGCTTTCTTATGGA 59.377 43.478 0.00 0.00 40.11 3.41
271 272 3.623060 TCGCTGATTGCTTTCTTATGGAC 59.377 43.478 0.00 0.00 40.11 4.02
272 273 3.374988 CGCTGATTGCTTTCTTATGGACA 59.625 43.478 0.00 0.00 40.11 4.02
273 274 4.142622 CGCTGATTGCTTTCTTATGGACAA 60.143 41.667 0.00 0.00 40.11 3.18
274 275 5.098211 GCTGATTGCTTTCTTATGGACAAC 58.902 41.667 0.00 0.00 38.95 3.32
275 276 5.295431 TGATTGCTTTCTTATGGACAACG 57.705 39.130 0.00 0.00 0.00 4.10
276 277 5.000591 TGATTGCTTTCTTATGGACAACGA 58.999 37.500 0.00 0.00 0.00 3.85
277 278 4.742438 TTGCTTTCTTATGGACAACGAC 57.258 40.909 0.00 0.00 0.00 4.34
278 279 3.734463 TGCTTTCTTATGGACAACGACA 58.266 40.909 0.00 0.00 0.00 4.35
279 280 3.745975 TGCTTTCTTATGGACAACGACAG 59.254 43.478 0.00 0.00 0.00 3.51
280 281 3.746492 GCTTTCTTATGGACAACGACAGT 59.254 43.478 0.00 0.00 0.00 3.55
281 282 4.143094 GCTTTCTTATGGACAACGACAGTC 60.143 45.833 0.00 0.00 35.29 3.51
287 288 3.680842 GACAACGACAGTCCAAGGT 57.319 52.632 0.00 0.00 0.00 3.50
288 289 2.806608 GACAACGACAGTCCAAGGTA 57.193 50.000 0.00 0.00 0.00 3.08
289 290 3.102052 GACAACGACAGTCCAAGGTAA 57.898 47.619 0.00 0.00 0.00 2.85
290 291 2.798847 GACAACGACAGTCCAAGGTAAC 59.201 50.000 0.00 0.00 0.00 2.50
291 292 1.790623 CAACGACAGTCCAAGGTAACG 59.209 52.381 0.00 0.00 46.39 3.18
292 293 0.319297 ACGACAGTCCAAGGTAACGC 60.319 55.000 0.00 0.00 46.39 4.84
293 294 0.319211 CGACAGTCCAAGGTAACGCA 60.319 55.000 0.00 0.00 46.39 5.24
294 295 1.145803 GACAGTCCAAGGTAACGCAC 58.854 55.000 0.00 0.00 46.39 5.34
302 303 3.493213 GGTAACGCACCGGGAATG 58.507 61.111 6.32 0.00 37.63 2.67
303 304 1.078988 GGTAACGCACCGGGAATGA 60.079 57.895 6.32 0.00 37.63 2.57
304 305 0.463116 GGTAACGCACCGGGAATGAT 60.463 55.000 6.32 0.00 37.63 2.45
305 306 0.935196 GTAACGCACCGGGAATGATC 59.065 55.000 6.32 0.00 0.00 2.92
306 307 0.179067 TAACGCACCGGGAATGATCC 60.179 55.000 6.32 0.00 45.77 3.36
314 315 4.464262 GGAATGATCCCGCTGGAC 57.536 61.111 0.00 0.00 45.58 4.02
315 316 1.526887 GGAATGATCCCGCTGGACA 59.473 57.895 0.00 0.38 45.58 4.02
316 317 0.533755 GGAATGATCCCGCTGGACAG 60.534 60.000 0.00 0.00 45.58 3.51
317 318 1.153086 AATGATCCCGCTGGACAGC 60.153 57.895 14.08 14.08 45.58 4.40
326 327 3.076092 CTGGACAGCCAAGCTCCT 58.924 61.111 0.00 0.00 45.41 3.69
327 328 1.078567 CTGGACAGCCAAGCTCCTC 60.079 63.158 0.00 0.00 45.41 3.71
328 329 1.834856 CTGGACAGCCAAGCTCCTCA 61.835 60.000 0.00 0.00 45.41 3.86
329 330 1.376553 GGACAGCCAAGCTCCTCAC 60.377 63.158 0.00 0.00 36.40 3.51
330 331 1.676384 GACAGCCAAGCTCCTCACT 59.324 57.895 0.00 0.00 36.40 3.41
331 332 0.390998 GACAGCCAAGCTCCTCACTC 60.391 60.000 0.00 0.00 36.40 3.51
332 333 1.123861 ACAGCCAAGCTCCTCACTCA 61.124 55.000 0.00 0.00 36.40 3.41
333 334 0.673022 CAGCCAAGCTCCTCACTCAC 60.673 60.000 0.00 0.00 36.40 3.51
334 335 1.376553 GCCAAGCTCCTCACTCACC 60.377 63.158 0.00 0.00 0.00 4.02
335 336 2.061220 CCAAGCTCCTCACTCACCA 58.939 57.895 0.00 0.00 0.00 4.17
336 337 0.617413 CCAAGCTCCTCACTCACCAT 59.383 55.000 0.00 0.00 0.00 3.55
337 338 1.833630 CCAAGCTCCTCACTCACCATA 59.166 52.381 0.00 0.00 0.00 2.74
338 339 2.158986 CCAAGCTCCTCACTCACCATAG 60.159 54.545 0.00 0.00 0.00 2.23
339 340 1.786937 AGCTCCTCACTCACCATAGG 58.213 55.000 0.00 0.00 0.00 2.57
340 341 0.755686 GCTCCTCACTCACCATAGGG 59.244 60.000 0.00 0.00 41.29 3.53
341 342 1.689575 GCTCCTCACTCACCATAGGGA 60.690 57.143 0.00 0.00 38.05 4.20
342 343 2.969628 CTCCTCACTCACCATAGGGAT 58.030 52.381 0.00 0.00 38.05 3.85
343 344 2.632028 CTCCTCACTCACCATAGGGATG 59.368 54.545 0.00 0.00 38.05 3.51
344 345 1.071385 CCTCACTCACCATAGGGATGC 59.929 57.143 0.00 0.00 38.05 3.91
345 346 1.764723 CTCACTCACCATAGGGATGCA 59.235 52.381 0.00 0.00 38.05 3.96
346 347 2.371179 CTCACTCACCATAGGGATGCAT 59.629 50.000 0.00 0.00 38.05 3.96
347 348 2.779430 TCACTCACCATAGGGATGCATT 59.221 45.455 0.00 0.00 38.05 3.56
348 349 2.882761 CACTCACCATAGGGATGCATTG 59.117 50.000 0.00 0.00 38.05 2.82
349 350 2.511218 ACTCACCATAGGGATGCATTGT 59.489 45.455 0.00 0.00 38.05 2.71
350 351 3.053395 ACTCACCATAGGGATGCATTGTT 60.053 43.478 0.00 0.00 38.05 2.83
351 352 3.554934 TCACCATAGGGATGCATTGTTC 58.445 45.455 0.00 0.00 38.05 3.18
352 353 2.624838 CACCATAGGGATGCATTGTTCC 59.375 50.000 0.00 0.00 38.05 3.62
353 354 1.881973 CCATAGGGATGCATTGTTCCG 59.118 52.381 0.00 0.00 35.59 4.30
354 355 2.487086 CCATAGGGATGCATTGTTCCGA 60.487 50.000 0.00 0.00 35.59 4.55
355 356 2.620251 TAGGGATGCATTGTTCCGAG 57.380 50.000 0.00 0.00 32.48 4.63
356 357 0.749454 AGGGATGCATTGTTCCGAGC 60.749 55.000 0.00 0.00 32.48 5.03
357 358 1.031571 GGGATGCATTGTTCCGAGCA 61.032 55.000 0.00 0.00 41.73 4.26
358 359 0.099436 GGATGCATTGTTCCGAGCAC 59.901 55.000 0.00 0.00 40.14 4.40
359 360 0.099436 GATGCATTGTTCCGAGCACC 59.901 55.000 0.00 0.00 40.14 5.01
360 361 1.647545 ATGCATTGTTCCGAGCACCG 61.648 55.000 0.00 0.00 40.14 4.94
361 362 2.325082 GCATTGTTCCGAGCACCGT 61.325 57.895 0.00 0.00 36.31 4.83
362 363 1.017177 GCATTGTTCCGAGCACCGTA 61.017 55.000 0.00 0.00 36.31 4.02
363 364 1.651987 CATTGTTCCGAGCACCGTAT 58.348 50.000 0.00 0.00 36.31 3.06
364 365 1.593006 CATTGTTCCGAGCACCGTATC 59.407 52.381 0.00 0.00 36.31 2.24
365 366 0.457166 TTGTTCCGAGCACCGTATCG 60.457 55.000 0.00 0.00 38.65 2.92
375 376 4.104143 CCGTATCGGGAGTGCAAC 57.896 61.111 0.00 0.00 44.15 4.17
376 377 1.876714 CCGTATCGGGAGTGCAACG 60.877 63.158 0.00 0.00 42.94 4.10
377 378 1.876714 CGTATCGGGAGTGCAACGG 60.877 63.158 0.00 0.00 45.86 4.44
378 379 1.514087 GTATCGGGAGTGCAACGGA 59.486 57.895 0.00 0.00 45.86 4.69
379 380 0.804933 GTATCGGGAGTGCAACGGAC 60.805 60.000 0.00 0.00 45.86 4.79
380 381 0.968901 TATCGGGAGTGCAACGGACT 60.969 55.000 0.00 0.00 45.86 3.85
381 382 1.827399 ATCGGGAGTGCAACGGACTT 61.827 55.000 0.00 0.00 45.86 3.01
382 383 2.027625 CGGGAGTGCAACGGACTTC 61.028 63.158 0.00 0.00 45.86 3.01
383 384 1.671379 GGGAGTGCAACGGACTTCC 60.671 63.158 0.00 0.00 45.86 3.46
384 385 1.371558 GGAGTGCAACGGACTTCCT 59.628 57.895 0.00 0.00 45.86 3.36
385 386 0.250338 GGAGTGCAACGGACTTCCTT 60.250 55.000 0.00 0.00 45.86 3.36
386 387 1.001633 GGAGTGCAACGGACTTCCTTA 59.998 52.381 0.00 0.00 45.86 2.69
387 388 2.354805 GGAGTGCAACGGACTTCCTTAT 60.355 50.000 0.00 0.00 45.86 1.73
388 389 2.673368 GAGTGCAACGGACTTCCTTATG 59.327 50.000 0.00 0.00 45.86 1.90
389 390 2.038557 AGTGCAACGGACTTCCTTATGT 59.961 45.455 0.00 0.00 45.86 2.29
390 391 2.812011 GTGCAACGGACTTCCTTATGTT 59.188 45.455 0.00 0.00 0.00 2.71
391 392 3.252458 GTGCAACGGACTTCCTTATGTTT 59.748 43.478 0.00 0.00 0.00 2.83
392 393 4.453136 GTGCAACGGACTTCCTTATGTTTA 59.547 41.667 0.00 0.00 0.00 2.01
393 394 5.123344 GTGCAACGGACTTCCTTATGTTTAT 59.877 40.000 0.00 0.00 0.00 1.40
394 395 5.123186 TGCAACGGACTTCCTTATGTTTATG 59.877 40.000 0.00 0.00 0.00 1.90
395 396 5.569413 CAACGGACTTCCTTATGTTTATGC 58.431 41.667 0.00 0.00 0.00 3.14
396 397 3.869246 ACGGACTTCCTTATGTTTATGCG 59.131 43.478 0.00 0.00 0.00 4.73
397 398 3.303132 CGGACTTCCTTATGTTTATGCGC 60.303 47.826 0.00 0.00 0.00 6.09
398 399 3.625764 GGACTTCCTTATGTTTATGCGCA 59.374 43.478 14.96 14.96 0.00 6.09
399 400 4.095782 GGACTTCCTTATGTTTATGCGCAA 59.904 41.667 17.11 0.00 0.00 4.85
400 401 5.235305 ACTTCCTTATGTTTATGCGCAAG 57.765 39.130 17.11 3.95 43.44 4.01
418 419 2.742372 CCCGACGCCTCACCAAAG 60.742 66.667 0.00 0.00 0.00 2.77
419 420 2.342279 CCGACGCCTCACCAAAGA 59.658 61.111 0.00 0.00 0.00 2.52
420 421 1.079127 CCGACGCCTCACCAAAGAT 60.079 57.895 0.00 0.00 0.00 2.40
421 422 0.174845 CCGACGCCTCACCAAAGATA 59.825 55.000 0.00 0.00 0.00 1.98
422 423 1.202533 CCGACGCCTCACCAAAGATAT 60.203 52.381 0.00 0.00 0.00 1.63
423 424 2.128035 CGACGCCTCACCAAAGATATC 58.872 52.381 0.00 0.00 0.00 1.63
424 425 2.481276 CGACGCCTCACCAAAGATATCA 60.481 50.000 5.32 0.00 0.00 2.15
425 426 3.531538 GACGCCTCACCAAAGATATCAA 58.468 45.455 5.32 0.00 0.00 2.57
426 427 3.938963 GACGCCTCACCAAAGATATCAAA 59.061 43.478 5.32 0.00 0.00 2.69
427 428 4.331968 ACGCCTCACCAAAGATATCAAAA 58.668 39.130 5.32 0.00 0.00 2.44
428 429 4.764823 ACGCCTCACCAAAGATATCAAAAA 59.235 37.500 5.32 0.00 0.00 1.94
429 430 5.418840 ACGCCTCACCAAAGATATCAAAAAT 59.581 36.000 5.32 0.00 0.00 1.82
430 431 5.973565 CGCCTCACCAAAGATATCAAAAATC 59.026 40.000 5.32 0.00 0.00 2.17
431 432 6.276091 GCCTCACCAAAGATATCAAAAATCC 58.724 40.000 5.32 0.00 0.00 3.01
432 433 6.097412 GCCTCACCAAAGATATCAAAAATCCT 59.903 38.462 5.32 0.00 0.00 3.24
433 434 7.364144 GCCTCACCAAAGATATCAAAAATCCTT 60.364 37.037 5.32 0.00 0.00 3.36
434 435 8.534496 CCTCACCAAAGATATCAAAAATCCTTT 58.466 33.333 5.32 0.00 0.00 3.11
435 436 9.933723 CTCACCAAAGATATCAAAAATCCTTTT 57.066 29.630 5.32 0.00 35.02 2.27
455 456 2.682952 GCAGATTGCAAGATCCATCG 57.317 50.000 4.94 0.00 44.26 3.84
456 457 1.266175 GCAGATTGCAAGATCCATCGG 59.734 52.381 4.94 0.00 44.26 4.18
457 458 2.569059 CAGATTGCAAGATCCATCGGT 58.431 47.619 4.94 0.00 0.00 4.69
458 459 2.947652 CAGATTGCAAGATCCATCGGTT 59.052 45.455 4.94 0.00 0.00 4.44
459 460 3.003068 CAGATTGCAAGATCCATCGGTTC 59.997 47.826 4.94 0.00 0.00 3.62
460 461 2.787473 TTGCAAGATCCATCGGTTCT 57.213 45.000 0.00 0.00 33.64 3.01
461 462 2.028420 TGCAAGATCCATCGGTTCTG 57.972 50.000 0.00 0.00 32.71 3.02
462 463 1.303309 GCAAGATCCATCGGTTCTGG 58.697 55.000 0.00 0.00 32.71 3.86
463 464 1.303309 CAAGATCCATCGGTTCTGGC 58.697 55.000 0.00 0.00 32.71 4.85
464 465 1.134280 CAAGATCCATCGGTTCTGGCT 60.134 52.381 0.00 0.00 32.71 4.75
465 466 1.207791 AGATCCATCGGTTCTGGCTT 58.792 50.000 0.00 0.00 31.34 4.35
466 467 1.134280 AGATCCATCGGTTCTGGCTTG 60.134 52.381 0.00 0.00 31.34 4.01
467 468 0.107017 ATCCATCGGTTCTGGCTTGG 60.107 55.000 0.00 0.00 33.56 3.61
468 469 1.002134 CCATCGGTTCTGGCTTGGT 60.002 57.895 0.00 0.00 0.00 3.67
469 470 0.251916 CCATCGGTTCTGGCTTGGTA 59.748 55.000 0.00 0.00 0.00 3.25
470 471 1.369625 CATCGGTTCTGGCTTGGTAC 58.630 55.000 0.00 0.00 0.00 3.34
471 472 0.108329 ATCGGTTCTGGCTTGGTACG 60.108 55.000 0.00 0.00 0.00 3.67
472 473 2.388232 CGGTTCTGGCTTGGTACGC 61.388 63.158 0.00 0.00 0.00 4.42
473 474 1.302192 GGTTCTGGCTTGGTACGCA 60.302 57.895 0.00 0.00 0.00 5.24
474 475 0.887387 GGTTCTGGCTTGGTACGCAA 60.887 55.000 0.00 0.00 0.00 4.85
475 476 0.948678 GTTCTGGCTTGGTACGCAAA 59.051 50.000 0.00 0.00 0.00 3.68
476 477 1.335496 GTTCTGGCTTGGTACGCAAAA 59.665 47.619 0.00 0.00 0.00 2.44
477 478 1.681538 TCTGGCTTGGTACGCAAAAA 58.318 45.000 0.00 0.00 0.00 1.94
499 500 6.738832 AAACGAGAGCCTTTTCTTTATACC 57.261 37.500 0.00 0.00 0.00 2.73
500 501 4.767478 ACGAGAGCCTTTTCTTTATACCC 58.233 43.478 0.00 0.00 0.00 3.69
501 502 3.802685 CGAGAGCCTTTTCTTTATACCCG 59.197 47.826 0.00 0.00 0.00 5.28
502 503 4.679905 CGAGAGCCTTTTCTTTATACCCGT 60.680 45.833 0.00 0.00 0.00 5.28
503 504 5.175388 AGAGCCTTTTCTTTATACCCGTT 57.825 39.130 0.00 0.00 0.00 4.44
504 505 4.941873 AGAGCCTTTTCTTTATACCCGTTG 59.058 41.667 0.00 0.00 0.00 4.10
505 506 4.659115 AGCCTTTTCTTTATACCCGTTGT 58.341 39.130 0.00 0.00 0.00 3.32
506 507 4.698780 AGCCTTTTCTTTATACCCGTTGTC 59.301 41.667 0.00 0.00 0.00 3.18
507 508 4.436451 GCCTTTTCTTTATACCCGTTGTCG 60.436 45.833 0.00 0.00 0.00 4.35
508 509 4.436451 CCTTTTCTTTATACCCGTTGTCGC 60.436 45.833 0.00 0.00 35.54 5.19
509 510 2.298411 TCTTTATACCCGTTGTCGCC 57.702 50.000 0.00 0.00 35.54 5.54
510 511 1.549620 TCTTTATACCCGTTGTCGCCA 59.450 47.619 0.00 0.00 35.54 5.69
511 512 2.028294 TCTTTATACCCGTTGTCGCCAA 60.028 45.455 0.00 0.00 35.54 4.52
512 513 2.012937 TTATACCCGTTGTCGCCAAG 57.987 50.000 0.00 0.00 35.54 3.61
513 514 0.176219 TATACCCGTTGTCGCCAAGG 59.824 55.000 0.00 0.00 36.46 3.61
514 515 1.546589 ATACCCGTTGTCGCCAAGGA 61.547 55.000 0.00 0.00 38.44 3.36
515 516 2.438951 TACCCGTTGTCGCCAAGGAC 62.439 60.000 0.00 0.00 38.44 3.85
516 517 2.030562 CCGTTGTCGCCAAGGACT 59.969 61.111 0.00 0.00 38.44 3.85
517 518 2.317609 CCGTTGTCGCCAAGGACTG 61.318 63.158 0.00 0.00 38.44 3.51
518 519 2.946762 GTTGTCGCCAAGGACTGC 59.053 61.111 0.00 0.00 37.81 4.40
519 520 1.891919 GTTGTCGCCAAGGACTGCA 60.892 57.895 0.00 0.00 37.81 4.41
520 521 1.153066 TTGTCGCCAAGGACTGCAA 60.153 52.632 0.00 0.00 37.81 4.08
521 522 0.749818 TTGTCGCCAAGGACTGCAAA 60.750 50.000 0.00 0.00 37.81 3.68
522 523 0.749818 TGTCGCCAAGGACTGCAAAA 60.750 50.000 0.00 0.00 37.81 2.44
523 524 0.383949 GTCGCCAAGGACTGCAAAAA 59.616 50.000 0.00 0.00 34.09 1.94
538 539 1.447217 AAAAACCCCTGCTTGCTGC 59.553 52.632 0.00 0.00 43.25 5.25
539 540 2.043604 AAAAACCCCTGCTTGCTGCC 62.044 55.000 0.00 0.00 42.00 4.85
542 543 4.772231 CCCCTGCTTGCTGCCCAT 62.772 66.667 0.00 0.00 42.00 4.00
543 544 3.458163 CCCTGCTTGCTGCCCATG 61.458 66.667 0.00 0.00 42.00 3.66
544 545 4.143333 CCTGCTTGCTGCCCATGC 62.143 66.667 0.00 5.67 43.01 4.06
570 571 0.523072 CGAGAGGCAAATGGTGTTGG 59.477 55.000 0.00 0.00 0.00 3.77
585 586 2.161410 GTGTTGGACATGAATTAGCGCA 59.839 45.455 11.47 0.00 0.00 6.09
630 631 2.254546 TGAGTGGTTAGGTGTTGCTG 57.745 50.000 0.00 0.00 0.00 4.41
641 642 2.364970 AGGTGTTGCTGCAAATGCTTTA 59.635 40.909 17.80 0.00 42.66 1.85
645 646 4.270808 GTGTTGCTGCAAATGCTTTACTTT 59.729 37.500 17.80 0.00 42.66 2.66
649 650 3.922850 GCTGCAAATGCTTTACTTTCTCC 59.077 43.478 6.97 0.00 42.66 3.71
662 663 8.809478 GCTTTACTTTCTCCGATACTAAAAGAG 58.191 37.037 0.00 0.00 32.59 2.85
666 667 8.358582 ACTTTCTCCGATACTAAAAGAGGTAA 57.641 34.615 0.00 0.00 32.59 2.85
672 673 8.579850 TCCGATACTAAAAGAGGTAAGTGTTA 57.420 34.615 0.00 0.00 0.00 2.41
684 685 7.624549 AGAGGTAAGTGTTATCACATGTGAAT 58.375 34.615 31.00 20.68 46.01 2.57
694 695 9.513906 TGTTATCACATGTGAATAAAGAGGAAA 57.486 29.630 31.00 5.06 43.58 3.13
764 768 6.147656 GGAATTTTGTGTATTCTTTTGCAGGG 59.852 38.462 0.00 0.00 33.51 4.45
816 2633 5.012354 ACTTCAAAACATGGCAATCAGGAAT 59.988 36.000 0.00 0.00 0.00 3.01
830 2647 6.936900 GCAATCAGGAATAGTATTTGCCTAGA 59.063 38.462 3.43 4.82 0.00 2.43
836 2653 5.929415 GGAATAGTATTTGCCTAGACTCAGC 59.071 44.000 0.00 0.00 0.00 4.26
838 2655 4.826274 AGTATTTGCCTAGACTCAGCAA 57.174 40.909 7.74 7.74 44.32 3.91
879 2696 1.806542 CTCCGAACAATCCTGGTGTTG 59.193 52.381 7.35 9.53 39.29 3.33
907 2724 3.731867 CGCATTCAGTATTGCCCTTGTTC 60.732 47.826 0.00 0.00 35.41 3.18
970 2787 4.255833 TCTGCCACCATTGAATTTTCAC 57.744 40.909 0.00 0.00 36.83 3.18
980 2797 1.606668 TGAATTTTCACACGGAGGCAC 59.393 47.619 0.00 0.00 31.01 5.01
981 2798 0.958822 AATTTTCACACGGAGGCACC 59.041 50.000 0.00 0.00 0.00 5.01
982 2799 0.110486 ATTTTCACACGGAGGCACCT 59.890 50.000 0.00 0.00 36.31 4.00
983 2800 0.817634 TTTTCACACGGAGGCACCTG 60.818 55.000 0.00 0.00 36.31 4.00
984 2801 2.674563 TTTCACACGGAGGCACCTGG 62.675 60.000 0.00 0.00 36.31 4.45
985 2802 4.704833 CACACGGAGGCACCTGGG 62.705 72.222 0.00 0.00 36.31 4.45
1130 2947 4.394712 CGCCCTCAAGTCGCCCTT 62.395 66.667 0.00 0.00 0.00 3.95
1218 3035 2.126071 CGCAGGGTGTTCGACGAT 60.126 61.111 0.00 0.00 0.00 3.73
1221 3038 1.488527 GCAGGGTGTTCGACGATATC 58.511 55.000 0.00 0.00 0.00 1.63
1227 3044 1.288127 GTTCGACGATATCCCCCGG 59.712 63.158 0.00 0.00 0.00 5.73
1395 3212 4.699522 GCCGACGCCCTCCTGTTT 62.700 66.667 0.00 0.00 0.00 2.83
1446 3263 1.667724 CTCAATGCCTACTCCTTTGCG 59.332 52.381 0.00 0.00 0.00 4.85
1479 3296 1.599047 CTGTGCCGTGGAGAAGGAT 59.401 57.895 0.00 0.00 0.00 3.24
1731 3548 1.675641 GAATGCCGGTCTTGTGCCT 60.676 57.895 1.90 0.00 0.00 4.75
1849 3666 1.633945 GGTTTAGGGAGGACATGGTGT 59.366 52.381 0.00 0.00 0.00 4.16
2010 3827 0.036952 ATGCTCAGGTGGTGTTCTCG 60.037 55.000 0.00 0.00 0.00 4.04
2073 3890 0.028505 CAGCATATGCACAGAACGGC 59.971 55.000 28.62 0.00 45.16 5.68
2217 4034 1.400846 CAAGCTCATGTGCATGTCCTC 59.599 52.381 20.92 1.41 39.72 3.71
2235 4052 2.226674 CCTCAAGGAAGGTTTTCGCTTC 59.773 50.000 0.00 0.00 37.39 3.86
2328 4145 3.411446 TGATGATGGTGTGAAGGTGTTC 58.589 45.455 0.00 0.00 0.00 3.18
2431 4248 4.857588 CACTGCATCTTTTTGAGAGAATGC 59.142 41.667 0.00 0.00 37.93 3.56
2433 4250 5.055642 TGCATCTTTTTGAGAGAATGCTG 57.944 39.130 6.68 0.00 37.93 4.41
2562 4379 4.772483 AGGATCATGGGATAACTCCATCT 58.228 43.478 0.00 0.00 42.63 2.90
2691 4508 2.027653 GGCTTCTCTGCTAGGTTCTTGT 60.028 50.000 0.00 0.00 0.00 3.16
2993 4810 3.133542 CAGATGCAGATGAGTAGGGTGAA 59.866 47.826 0.00 0.00 0.00 3.18
3107 4924 3.394940 AGATCATGGATGATGCAGAACCT 59.605 43.478 6.85 0.00 46.84 3.50
3150 4967 6.127647 TGGCAAAATGATTCTAAGTGATCCAC 60.128 38.462 0.00 0.00 34.10 4.02
3308 5126 6.370442 TGATTACTTATTTTGGACTCGGTGTG 59.630 38.462 0.00 0.00 0.00 3.82
3506 5324 3.405831 CAAAGTTCAGGAGCATGAGTCA 58.594 45.455 0.00 0.00 0.00 3.41
3741 5559 0.389166 GTCGTGGTCCTTCTGCTCTG 60.389 60.000 0.00 0.00 0.00 3.35
4033 5851 5.412594 TCTTACCATGAAAGATGCAACACTC 59.587 40.000 0.00 0.00 0.00 3.51
4034 5852 3.759581 ACCATGAAAGATGCAACACTCT 58.240 40.909 0.00 0.00 0.00 3.24
4035 5853 3.755378 ACCATGAAAGATGCAACACTCTC 59.245 43.478 0.00 0.00 0.00 3.20
4036 5854 4.008330 CCATGAAAGATGCAACACTCTCT 58.992 43.478 0.00 0.00 0.00 3.10
4037 5855 4.458295 CCATGAAAGATGCAACACTCTCTT 59.542 41.667 0.00 0.00 0.00 2.85
4038 5856 5.048224 CCATGAAAGATGCAACACTCTCTTT 60.048 40.000 9.83 9.83 39.86 2.52
4040 5858 5.679734 GAAAGATGCAACACTCTCTTTCA 57.320 39.130 23.70 0.00 46.57 2.69
4041 5859 6.064846 GAAAGATGCAACACTCTCTTTCAA 57.935 37.500 23.70 0.00 46.57 2.69
4042 5860 6.455360 AAAGATGCAACACTCTCTTTCAAA 57.545 33.333 5.15 0.00 33.79 2.69
4043 5861 6.455360 AAGATGCAACACTCTCTTTCAAAA 57.545 33.333 0.00 0.00 0.00 2.44
4044 5862 6.455360 AGATGCAACACTCTCTTTCAAAAA 57.545 33.333 0.00 0.00 0.00 1.94
4045 5863 7.047460 AGATGCAACACTCTCTTTCAAAAAT 57.953 32.000 0.00 0.00 0.00 1.82
4046 5864 8.169977 AGATGCAACACTCTCTTTCAAAAATA 57.830 30.769 0.00 0.00 0.00 1.40
4047 5865 8.632679 AGATGCAACACTCTCTTTCAAAAATAA 58.367 29.630 0.00 0.00 0.00 1.40
4048 5866 9.248291 GATGCAACACTCTCTTTCAAAAATAAA 57.752 29.630 0.00 0.00 0.00 1.40
4049 5867 9.768662 ATGCAACACTCTCTTTCAAAAATAAAT 57.231 25.926 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.883142 TGATACATGTGTGAATACATAGACAAA 57.117 29.630 9.11 0.00 39.17 2.83
2 3 9.480053 CATGATACATGTGTGAATACATAGACA 57.520 33.333 9.11 0.00 39.17 3.41
3 4 9.481340 ACATGATACATGTGTGAATACATAGAC 57.519 33.333 15.11 0.00 39.17 2.59
7 8 8.623903 GGAAACATGATACATGTGTGAATACAT 58.376 33.333 16.29 0.00 41.77 2.29
8 9 7.201600 CGGAAACATGATACATGTGTGAATACA 60.202 37.037 16.29 0.00 34.63 2.29
9 10 7.125755 CGGAAACATGATACATGTGTGAATAC 58.874 38.462 16.29 1.40 31.80 1.89
10 11 6.259829 CCGGAAACATGATACATGTGTGAATA 59.740 38.462 16.29 0.00 31.80 1.75
11 12 5.066375 CCGGAAACATGATACATGTGTGAAT 59.934 40.000 16.29 0.00 31.80 2.57
12 13 4.394610 CCGGAAACATGATACATGTGTGAA 59.605 41.667 16.29 0.00 31.80 3.18
13 14 3.938334 CCGGAAACATGATACATGTGTGA 59.062 43.478 16.29 0.00 31.80 3.58
14 15 3.689161 ACCGGAAACATGATACATGTGTG 59.311 43.478 9.46 4.81 31.80 3.82
15 16 3.950397 ACCGGAAACATGATACATGTGT 58.050 40.909 9.46 11.88 31.80 3.72
16 17 4.963276 AACCGGAAACATGATACATGTG 57.037 40.909 9.46 7.59 31.80 3.21
17 18 7.771361 TGTATTAACCGGAAACATGATACATGT 59.229 33.333 9.46 10.94 0.00 3.21
18 19 8.148807 TGTATTAACCGGAAACATGATACATG 57.851 34.615 9.46 9.72 0.00 3.21
19 20 8.740123 TTGTATTAACCGGAAACATGATACAT 57.260 30.769 9.46 0.00 31.27 2.29
20 21 8.740123 ATTGTATTAACCGGAAACATGATACA 57.260 30.769 9.46 9.57 0.00 2.29
21 22 9.659830 GAATTGTATTAACCGGAAACATGATAC 57.340 33.333 9.46 7.13 0.00 2.24
22 23 9.621629 AGAATTGTATTAACCGGAAACATGATA 57.378 29.630 9.46 0.00 0.00 2.15
23 24 8.519799 AGAATTGTATTAACCGGAAACATGAT 57.480 30.769 9.46 0.00 0.00 2.45
24 25 7.931578 AGAATTGTATTAACCGGAAACATGA 57.068 32.000 9.46 0.00 0.00 3.07
25 26 7.855904 GCTAGAATTGTATTAACCGGAAACATG 59.144 37.037 9.46 0.00 0.00 3.21
26 27 7.554835 TGCTAGAATTGTATTAACCGGAAACAT 59.445 33.333 9.46 0.00 0.00 2.71
27 28 6.879993 TGCTAGAATTGTATTAACCGGAAACA 59.120 34.615 9.46 1.34 0.00 2.83
28 29 7.311364 TGCTAGAATTGTATTAACCGGAAAC 57.689 36.000 9.46 0.00 0.00 2.78
29 30 7.771361 TCATGCTAGAATTGTATTAACCGGAAA 59.229 33.333 9.46 1.61 0.00 3.13
30 31 7.276658 TCATGCTAGAATTGTATTAACCGGAA 58.723 34.615 9.46 0.00 0.00 4.30
31 32 6.822442 TCATGCTAGAATTGTATTAACCGGA 58.178 36.000 9.46 0.00 0.00 5.14
32 33 7.490962 TTCATGCTAGAATTGTATTAACCGG 57.509 36.000 0.00 0.00 0.00 5.28
107 108 5.449553 ACTGAAGGAAATATGCCCTAAAGG 58.550 41.667 0.00 0.00 39.47 3.11
108 109 7.175641 CCATACTGAAGGAAATATGCCCTAAAG 59.824 40.741 0.00 1.89 31.36 1.85
109 110 7.004086 CCATACTGAAGGAAATATGCCCTAAA 58.996 38.462 0.00 0.00 31.36 1.85
110 111 6.467194 CCCATACTGAAGGAAATATGCCCTAA 60.467 42.308 0.00 0.00 31.36 2.69
111 112 5.014123 CCCATACTGAAGGAAATATGCCCTA 59.986 44.000 0.00 0.00 31.36 3.53
112 113 4.202609 CCCATACTGAAGGAAATATGCCCT 60.203 45.833 0.00 0.00 0.00 5.19
113 114 4.082125 CCCATACTGAAGGAAATATGCCC 58.918 47.826 0.00 0.00 0.00 5.36
114 115 3.507622 GCCCATACTGAAGGAAATATGCC 59.492 47.826 0.00 0.00 0.00 4.40
115 116 4.144297 TGCCCATACTGAAGGAAATATGC 58.856 43.478 0.00 0.00 0.00 3.14
116 117 5.122869 CGATGCCCATACTGAAGGAAATATG 59.877 44.000 0.00 0.00 0.00 1.78
117 118 5.248640 CGATGCCCATACTGAAGGAAATAT 58.751 41.667 0.00 0.00 0.00 1.28
118 119 4.641396 CGATGCCCATACTGAAGGAAATA 58.359 43.478 0.00 0.00 0.00 1.40
119 120 3.480470 CGATGCCCATACTGAAGGAAAT 58.520 45.455 0.00 0.00 0.00 2.17
120 121 2.917933 CGATGCCCATACTGAAGGAAA 58.082 47.619 0.00 0.00 0.00 3.13
121 122 1.475034 GCGATGCCCATACTGAAGGAA 60.475 52.381 0.00 0.00 0.00 3.36
122 123 0.106708 GCGATGCCCATACTGAAGGA 59.893 55.000 0.00 0.00 0.00 3.36
123 124 0.179048 TGCGATGCCCATACTGAAGG 60.179 55.000 0.00 0.00 0.00 3.46
124 125 0.940126 GTGCGATGCCCATACTGAAG 59.060 55.000 0.00 0.00 0.00 3.02
125 126 0.251634 TGTGCGATGCCCATACTGAA 59.748 50.000 0.00 0.00 0.00 3.02
126 127 0.469494 ATGTGCGATGCCCATACTGA 59.531 50.000 0.00 0.00 0.00 3.41
127 128 2.071540 CTATGTGCGATGCCCATACTG 58.928 52.381 0.00 0.00 0.00 2.74
128 129 1.970640 TCTATGTGCGATGCCCATACT 59.029 47.619 0.00 0.00 0.00 2.12
129 130 2.455674 TCTATGTGCGATGCCCATAC 57.544 50.000 0.00 0.00 0.00 2.39
130 131 2.103941 TGTTCTATGTGCGATGCCCATA 59.896 45.455 0.00 0.00 0.00 2.74
131 132 1.134128 TGTTCTATGTGCGATGCCCAT 60.134 47.619 0.00 0.00 0.00 4.00
132 133 0.251634 TGTTCTATGTGCGATGCCCA 59.748 50.000 0.00 0.00 0.00 5.36
133 134 0.940126 CTGTTCTATGTGCGATGCCC 59.060 55.000 0.00 0.00 0.00 5.36
134 135 1.939974 TCTGTTCTATGTGCGATGCC 58.060 50.000 0.00 0.00 0.00 4.40
135 136 3.847467 GCAATCTGTTCTATGTGCGATGC 60.847 47.826 0.00 0.00 0.00 3.91
136 137 3.310501 TGCAATCTGTTCTATGTGCGATG 59.689 43.478 0.00 0.00 34.73 3.84
137 138 3.310774 GTGCAATCTGTTCTATGTGCGAT 59.689 43.478 0.00 0.00 34.73 4.58
138 139 2.672874 GTGCAATCTGTTCTATGTGCGA 59.327 45.455 0.00 0.00 34.73 5.10
139 140 2.223112 GGTGCAATCTGTTCTATGTGCG 60.223 50.000 0.00 0.00 34.73 5.34
140 141 2.749076 TGGTGCAATCTGTTCTATGTGC 59.251 45.455 0.00 0.00 0.00 4.57
141 142 5.106038 ACATTGGTGCAATCTGTTCTATGTG 60.106 40.000 0.00 0.00 31.05 3.21
142 143 5.012239 ACATTGGTGCAATCTGTTCTATGT 58.988 37.500 0.00 0.00 31.05 2.29
143 144 5.571784 ACATTGGTGCAATCTGTTCTATG 57.428 39.130 0.00 0.00 31.05 2.23
144 145 6.183360 GCTTACATTGGTGCAATCTGTTCTAT 60.183 38.462 0.00 0.00 31.05 1.98
145 146 5.123820 GCTTACATTGGTGCAATCTGTTCTA 59.876 40.000 0.00 0.00 31.05 2.10
146 147 4.082571 GCTTACATTGGTGCAATCTGTTCT 60.083 41.667 0.00 0.00 31.05 3.01
147 148 4.168760 GCTTACATTGGTGCAATCTGTTC 58.831 43.478 0.00 0.00 31.05 3.18
148 149 3.056607 GGCTTACATTGGTGCAATCTGTT 60.057 43.478 0.00 0.00 31.05 3.16
149 150 2.493278 GGCTTACATTGGTGCAATCTGT 59.507 45.455 0.00 0.00 31.05 3.41
150 151 2.756760 AGGCTTACATTGGTGCAATCTG 59.243 45.455 0.00 0.00 31.05 2.90
151 152 3.091633 AGGCTTACATTGGTGCAATCT 57.908 42.857 0.00 0.00 31.05 2.40
152 153 3.066760 GGTAGGCTTACATTGGTGCAATC 59.933 47.826 8.39 0.00 31.05 2.67
153 154 3.023832 GGTAGGCTTACATTGGTGCAAT 58.976 45.455 8.39 0.00 34.04 3.56
154 155 2.224892 TGGTAGGCTTACATTGGTGCAA 60.225 45.455 8.39 0.00 0.00 4.08
155 156 1.352687 TGGTAGGCTTACATTGGTGCA 59.647 47.619 8.39 0.00 0.00 4.57
156 157 1.743394 GTGGTAGGCTTACATTGGTGC 59.257 52.381 8.39 0.00 0.00 5.01
157 158 3.350219 AGTGGTAGGCTTACATTGGTG 57.650 47.619 8.39 0.00 0.00 4.17
158 159 4.382386 AAAGTGGTAGGCTTACATTGGT 57.618 40.909 8.39 0.00 0.00 3.67
159 160 5.357032 CCTAAAAGTGGTAGGCTTACATTGG 59.643 44.000 8.39 0.00 32.07 3.16
160 161 6.436843 CCTAAAAGTGGTAGGCTTACATTG 57.563 41.667 8.39 0.00 32.07 2.82
169 170 3.545703 CCTCATGCCTAAAAGTGGTAGG 58.454 50.000 0.00 0.00 41.08 3.18
170 171 3.199946 TCCCTCATGCCTAAAAGTGGTAG 59.800 47.826 0.00 0.00 0.00 3.18
171 172 3.186283 TCCCTCATGCCTAAAAGTGGTA 58.814 45.455 0.00 0.00 0.00 3.25
172 173 1.992557 TCCCTCATGCCTAAAAGTGGT 59.007 47.619 0.00 0.00 0.00 4.16
173 174 2.806945 TCCCTCATGCCTAAAAGTGG 57.193 50.000 0.00 0.00 0.00 4.00
174 175 2.424956 GCTTCCCTCATGCCTAAAAGTG 59.575 50.000 0.00 0.00 0.00 3.16
175 176 2.621668 GGCTTCCCTCATGCCTAAAAGT 60.622 50.000 0.00 0.00 41.36 2.66
176 177 2.027385 GGCTTCCCTCATGCCTAAAAG 58.973 52.381 0.00 0.00 41.36 2.27
177 178 2.143876 GGCTTCCCTCATGCCTAAAA 57.856 50.000 0.00 0.00 41.36 1.52
178 179 3.903208 GGCTTCCCTCATGCCTAAA 57.097 52.632 0.00 0.00 41.36 1.85
182 183 1.454663 GGAAGGCTTCCCTCATGCC 60.455 63.158 31.92 8.27 44.30 4.40
183 184 4.249513 GGAAGGCTTCCCTCATGC 57.750 61.111 31.92 8.24 44.30 4.06
191 192 3.354352 GCTGCCAAAGTGGAAGGCTTC 62.354 57.143 18.98 18.98 43.81 3.86
192 193 1.466851 GCTGCCAAAGTGGAAGGCTT 61.467 55.000 0.00 0.00 43.81 4.35
193 194 1.905354 GCTGCCAAAGTGGAAGGCT 60.905 57.895 4.40 0.00 43.81 4.58
194 195 1.905354 AGCTGCCAAAGTGGAAGGC 60.905 57.895 4.40 0.00 43.81 4.35
195 196 1.530013 CCAGCTGCCAAAGTGGAAGG 61.530 60.000 8.66 0.00 43.81 3.46
196 197 0.825010 ACCAGCTGCCAAAGTGGAAG 60.825 55.000 8.66 0.00 46.53 3.46
197 198 0.396974 AACCAGCTGCCAAAGTGGAA 60.397 50.000 8.66 0.00 40.96 3.53
198 199 0.823356 GAACCAGCTGCCAAAGTGGA 60.823 55.000 8.66 0.00 40.96 4.02
199 200 1.662044 GAACCAGCTGCCAAAGTGG 59.338 57.895 8.66 3.57 41.55 4.00
200 201 1.283793 CGAACCAGCTGCCAAAGTG 59.716 57.895 8.66 0.00 0.00 3.16
201 202 2.555547 GCGAACCAGCTGCCAAAGT 61.556 57.895 8.66 0.00 0.00 2.66
202 203 2.256461 GCGAACCAGCTGCCAAAG 59.744 61.111 8.66 0.00 0.00 2.77
212 213 3.783020 GCTGGATCAGATGGCGAACCA 62.783 57.143 0.00 0.00 40.38 3.67
213 214 1.162800 GCTGGATCAGATGGCGAACC 61.163 60.000 0.00 0.00 32.44 3.62
214 215 0.462581 TGCTGGATCAGATGGCGAAC 60.463 55.000 0.00 0.00 32.44 3.95
215 216 0.179065 CTGCTGGATCAGATGGCGAA 60.179 55.000 0.00 0.00 36.19 4.70
216 217 1.044790 TCTGCTGGATCAGATGGCGA 61.045 55.000 0.00 0.00 38.11 5.54
217 218 1.444672 TCTGCTGGATCAGATGGCG 59.555 57.895 0.00 0.00 38.11 5.69
232 233 2.674852 AGCGACACAATTGCAGTATCTG 59.325 45.455 5.05 0.00 40.68 2.90
233 234 2.674852 CAGCGACACAATTGCAGTATCT 59.325 45.455 5.05 2.87 40.68 1.98
234 235 2.672874 TCAGCGACACAATTGCAGTATC 59.327 45.455 5.05 0.67 40.68 2.24
235 236 2.698803 TCAGCGACACAATTGCAGTAT 58.301 42.857 5.05 0.00 40.68 2.12
236 237 2.162319 TCAGCGACACAATTGCAGTA 57.838 45.000 5.05 0.00 40.68 2.74
237 238 1.527034 ATCAGCGACACAATTGCAGT 58.473 45.000 5.05 4.45 40.68 4.40
238 239 2.247637 CAATCAGCGACACAATTGCAG 58.752 47.619 5.05 0.74 40.68 4.41
239 240 2.334971 CAATCAGCGACACAATTGCA 57.665 45.000 5.05 0.00 40.68 4.08
240 241 0.986992 GCAATCAGCGACACAATTGC 59.013 50.000 5.05 3.48 44.84 3.56
251 252 4.970662 TGTCCATAAGAAAGCAATCAGC 57.029 40.909 0.00 0.00 46.19 4.26
252 253 5.122239 TCGTTGTCCATAAGAAAGCAATCAG 59.878 40.000 0.00 0.00 0.00 2.90
253 254 5.000591 TCGTTGTCCATAAGAAAGCAATCA 58.999 37.500 0.00 0.00 0.00 2.57
254 255 5.106712 TGTCGTTGTCCATAAGAAAGCAATC 60.107 40.000 0.00 0.00 0.00 2.67
255 256 4.759693 TGTCGTTGTCCATAAGAAAGCAAT 59.240 37.500 0.00 0.00 0.00 3.56
256 257 4.130857 TGTCGTTGTCCATAAGAAAGCAA 58.869 39.130 0.00 0.00 0.00 3.91
257 258 3.734463 TGTCGTTGTCCATAAGAAAGCA 58.266 40.909 0.00 0.00 0.00 3.91
258 259 3.746492 ACTGTCGTTGTCCATAAGAAAGC 59.254 43.478 0.00 0.00 0.00 3.51
259 260 5.517037 GACTGTCGTTGTCCATAAGAAAG 57.483 43.478 0.00 0.00 0.00 2.62
269 270 2.798847 GTTACCTTGGACTGTCGTTGTC 59.201 50.000 1.07 0.00 0.00 3.18
270 271 2.800629 CGTTACCTTGGACTGTCGTTGT 60.801 50.000 1.07 0.00 0.00 3.32
271 272 1.790623 CGTTACCTTGGACTGTCGTTG 59.209 52.381 1.07 0.00 0.00 4.10
272 273 1.870993 GCGTTACCTTGGACTGTCGTT 60.871 52.381 1.07 0.00 0.00 3.85
273 274 0.319297 GCGTTACCTTGGACTGTCGT 60.319 55.000 1.07 0.00 0.00 4.34
274 275 0.319211 TGCGTTACCTTGGACTGTCG 60.319 55.000 1.07 0.00 0.00 4.35
275 276 1.145803 GTGCGTTACCTTGGACTGTC 58.854 55.000 0.00 0.00 0.00 3.51
276 277 0.250166 GGTGCGTTACCTTGGACTGT 60.250 55.000 4.04 0.00 46.51 3.55
277 278 2.540145 GGTGCGTTACCTTGGACTG 58.460 57.895 4.04 0.00 46.51 3.51
285 286 0.463116 ATCATTCCCGGTGCGTTACC 60.463 55.000 0.00 1.40 46.56 2.85
286 287 0.935196 GATCATTCCCGGTGCGTTAC 59.065 55.000 0.00 0.00 0.00 2.50
287 288 0.179067 GGATCATTCCCGGTGCGTTA 60.179 55.000 0.00 0.00 35.84 3.18
288 289 1.451387 GGATCATTCCCGGTGCGTT 60.451 57.895 0.00 0.00 35.84 4.84
289 290 2.189521 GGATCATTCCCGGTGCGT 59.810 61.111 0.00 0.00 35.84 5.24
309 310 1.078567 GAGGAGCTTGGCTGTCCAG 60.079 63.158 0.00 0.00 44.53 3.86
310 311 1.842920 TGAGGAGCTTGGCTGTCCA 60.843 57.895 0.00 0.00 39.88 4.02
311 312 1.376553 GTGAGGAGCTTGGCTGTCC 60.377 63.158 0.00 0.00 39.88 4.02
312 313 0.390998 GAGTGAGGAGCTTGGCTGTC 60.391 60.000 0.00 0.00 39.88 3.51
313 314 1.123861 TGAGTGAGGAGCTTGGCTGT 61.124 55.000 0.00 0.00 39.88 4.40
314 315 0.673022 GTGAGTGAGGAGCTTGGCTG 60.673 60.000 0.00 0.00 39.88 4.85
315 316 1.676384 GTGAGTGAGGAGCTTGGCT 59.324 57.895 0.00 0.00 43.88 4.75
316 317 1.376553 GGTGAGTGAGGAGCTTGGC 60.377 63.158 0.00 0.00 0.00 4.52
317 318 0.617413 ATGGTGAGTGAGGAGCTTGG 59.383 55.000 0.00 0.00 0.00 3.61
318 319 2.158986 CCTATGGTGAGTGAGGAGCTTG 60.159 54.545 0.00 0.00 0.00 4.01
319 320 2.114616 CCTATGGTGAGTGAGGAGCTT 58.885 52.381 0.00 0.00 0.00 3.74
320 321 1.690845 CCCTATGGTGAGTGAGGAGCT 60.691 57.143 0.00 0.00 0.00 4.09
321 322 0.755686 CCCTATGGTGAGTGAGGAGC 59.244 60.000 0.00 0.00 0.00 4.70
322 323 2.461300 TCCCTATGGTGAGTGAGGAG 57.539 55.000 0.00 0.00 0.00 3.69
323 324 2.682594 CATCCCTATGGTGAGTGAGGA 58.317 52.381 0.00 0.00 0.00 3.71
324 325 1.071385 GCATCCCTATGGTGAGTGAGG 59.929 57.143 0.00 0.00 33.38 3.86
325 326 1.764723 TGCATCCCTATGGTGAGTGAG 59.235 52.381 0.00 0.00 33.38 3.51
326 327 1.878211 TGCATCCCTATGGTGAGTGA 58.122 50.000 0.00 0.00 33.38 3.41
327 328 2.882761 CAATGCATCCCTATGGTGAGTG 59.117 50.000 0.00 0.00 33.38 3.51
328 329 2.511218 ACAATGCATCCCTATGGTGAGT 59.489 45.455 0.00 0.00 33.38 3.41
329 330 3.219176 ACAATGCATCCCTATGGTGAG 57.781 47.619 0.00 0.00 33.38 3.51
330 331 3.554934 GAACAATGCATCCCTATGGTGA 58.445 45.455 0.00 0.00 33.38 4.02
331 332 2.624838 GGAACAATGCATCCCTATGGTG 59.375 50.000 0.00 0.00 33.38 4.17
332 333 2.749466 CGGAACAATGCATCCCTATGGT 60.749 50.000 0.00 0.00 33.38 3.55
333 334 1.881973 CGGAACAATGCATCCCTATGG 59.118 52.381 0.00 0.00 33.38 2.74
334 335 2.810274 CTCGGAACAATGCATCCCTATG 59.190 50.000 0.00 0.00 36.09 2.23
335 336 2.811873 GCTCGGAACAATGCATCCCTAT 60.812 50.000 0.00 0.00 31.73 2.57
336 337 1.475034 GCTCGGAACAATGCATCCCTA 60.475 52.381 0.00 0.00 31.73 3.53
337 338 0.749454 GCTCGGAACAATGCATCCCT 60.749 55.000 0.00 0.00 31.73 4.20
338 339 1.031571 TGCTCGGAACAATGCATCCC 61.032 55.000 0.00 0.00 31.73 3.85
339 340 0.099436 GTGCTCGGAACAATGCATCC 59.901 55.000 0.00 0.00 37.76 3.51
340 341 0.099436 GGTGCTCGGAACAATGCATC 59.901 55.000 0.00 0.00 37.76 3.91
341 342 1.647545 CGGTGCTCGGAACAATGCAT 61.648 55.000 0.00 0.00 37.76 3.96
342 343 2.324330 CGGTGCTCGGAACAATGCA 61.324 57.895 0.00 0.00 34.75 3.96
343 344 1.017177 TACGGTGCTCGGAACAATGC 61.017 55.000 0.00 0.00 44.45 3.56
344 345 1.593006 GATACGGTGCTCGGAACAATG 59.407 52.381 0.00 0.00 44.45 2.82
345 346 1.801395 CGATACGGTGCTCGGAACAAT 60.801 52.381 0.00 0.00 44.45 2.71
346 347 0.457166 CGATACGGTGCTCGGAACAA 60.457 55.000 0.00 0.00 44.45 2.83
347 348 1.138036 CGATACGGTGCTCGGAACA 59.862 57.895 0.00 0.00 44.45 3.18
348 349 3.993103 CGATACGGTGCTCGGAAC 58.007 61.111 0.00 0.00 44.45 3.62
352 353 2.331805 CTCCCGATACGGTGCTCG 59.668 66.667 9.28 7.66 46.80 5.03
353 354 1.065928 CACTCCCGATACGGTGCTC 59.934 63.158 9.28 0.00 46.80 4.26
354 355 3.077519 GCACTCCCGATACGGTGCT 62.078 63.158 13.99 0.00 46.80 4.40
355 356 2.585247 GCACTCCCGATACGGTGC 60.585 66.667 9.28 8.63 46.80 5.01
356 357 1.082117 GTTGCACTCCCGATACGGTG 61.082 60.000 9.28 2.67 46.80 4.94
357 358 1.217244 GTTGCACTCCCGATACGGT 59.783 57.895 9.28 0.00 46.80 4.83
359 360 1.876714 CCGTTGCACTCCCGATACG 60.877 63.158 0.00 0.00 0.00 3.06
360 361 0.804933 GTCCGTTGCACTCCCGATAC 60.805 60.000 0.00 0.00 0.00 2.24
361 362 0.968901 AGTCCGTTGCACTCCCGATA 60.969 55.000 0.00 0.00 0.00 2.92
362 363 1.827399 AAGTCCGTTGCACTCCCGAT 61.827 55.000 0.00 0.00 0.00 4.18
363 364 2.430382 GAAGTCCGTTGCACTCCCGA 62.430 60.000 0.00 0.00 0.00 5.14
364 365 2.027625 GAAGTCCGTTGCACTCCCG 61.028 63.158 0.00 0.00 0.00 5.14
365 366 1.671379 GGAAGTCCGTTGCACTCCC 60.671 63.158 0.00 0.00 0.00 4.30
366 367 0.250338 AAGGAAGTCCGTTGCACTCC 60.250 55.000 0.00 0.00 42.08 3.85
367 368 2.450609 TAAGGAAGTCCGTTGCACTC 57.549 50.000 0.00 0.00 42.08 3.51
368 369 2.038557 ACATAAGGAAGTCCGTTGCACT 59.961 45.455 0.00 0.00 42.08 4.40
369 370 2.423577 ACATAAGGAAGTCCGTTGCAC 58.576 47.619 0.00 0.00 42.08 4.57
370 371 2.851263 ACATAAGGAAGTCCGTTGCA 57.149 45.000 0.00 0.00 42.08 4.08
371 372 5.569413 CATAAACATAAGGAAGTCCGTTGC 58.431 41.667 0.00 0.00 42.08 4.17
372 373 5.569413 GCATAAACATAAGGAAGTCCGTTG 58.431 41.667 0.00 0.00 42.08 4.10
373 374 4.331717 CGCATAAACATAAGGAAGTCCGTT 59.668 41.667 0.00 0.00 42.08 4.44
374 375 3.869246 CGCATAAACATAAGGAAGTCCGT 59.131 43.478 0.00 0.00 42.08 4.69
375 376 3.303132 GCGCATAAACATAAGGAAGTCCG 60.303 47.826 0.30 0.00 42.08 4.79
376 377 3.625764 TGCGCATAAACATAAGGAAGTCC 59.374 43.478 5.66 0.00 0.00 3.85
377 378 4.875544 TGCGCATAAACATAAGGAAGTC 57.124 40.909 5.66 0.00 0.00 3.01
378 379 4.438744 GCTTGCGCATAAACATAAGGAAGT 60.439 41.667 12.75 0.00 35.78 3.01
379 380 4.037690 GCTTGCGCATAAACATAAGGAAG 58.962 43.478 12.75 0.93 35.78 3.46
380 381 3.181491 GGCTTGCGCATAAACATAAGGAA 60.181 43.478 12.75 0.00 38.10 3.36
381 382 2.357637 GGCTTGCGCATAAACATAAGGA 59.642 45.455 12.75 0.00 38.10 3.36
382 383 2.543653 GGGCTTGCGCATAAACATAAGG 60.544 50.000 12.75 0.00 38.10 2.69
383 384 2.731217 GGGCTTGCGCATAAACATAAG 58.269 47.619 12.75 3.56 38.10 1.73
384 385 1.064803 CGGGCTTGCGCATAAACATAA 59.935 47.619 12.75 0.00 38.10 1.90
385 386 0.660488 CGGGCTTGCGCATAAACATA 59.340 50.000 12.75 0.00 38.10 2.29
386 387 1.029408 TCGGGCTTGCGCATAAACAT 61.029 50.000 12.75 0.00 38.10 2.71
387 388 1.672682 TCGGGCTTGCGCATAAACA 60.673 52.632 12.75 0.00 38.10 2.83
388 389 1.226295 GTCGGGCTTGCGCATAAAC 60.226 57.895 12.75 1.62 38.10 2.01
389 390 2.745785 CGTCGGGCTTGCGCATAAA 61.746 57.895 12.75 0.00 38.10 1.40
390 391 3.192230 CGTCGGGCTTGCGCATAA 61.192 61.111 12.75 0.00 38.10 1.90
401 402 2.521958 ATCTTTGGTGAGGCGTCGGG 62.522 60.000 1.39 0.00 0.00 5.14
402 403 0.174845 TATCTTTGGTGAGGCGTCGG 59.825 55.000 1.39 0.00 0.00 4.79
403 404 2.128035 GATATCTTTGGTGAGGCGTCG 58.872 52.381 1.39 0.00 0.00 5.12
404 405 3.179443 TGATATCTTTGGTGAGGCGTC 57.821 47.619 3.98 0.00 0.00 5.19
405 406 3.627395 TTGATATCTTTGGTGAGGCGT 57.373 42.857 3.98 0.00 0.00 5.68
406 407 4.963276 TTTTGATATCTTTGGTGAGGCG 57.037 40.909 3.98 0.00 0.00 5.52
407 408 6.097412 AGGATTTTTGATATCTTTGGTGAGGC 59.903 38.462 3.98 0.00 0.00 4.70
408 409 7.651027 AGGATTTTTGATATCTTTGGTGAGG 57.349 36.000 3.98 0.00 0.00 3.86
436 437 1.266175 CCGATGGATCTTGCAATCTGC 59.734 52.381 0.00 0.00 45.29 4.26
437 438 2.569059 ACCGATGGATCTTGCAATCTG 58.431 47.619 0.00 0.00 0.00 2.90
438 439 3.118112 AGAACCGATGGATCTTGCAATCT 60.118 43.478 0.00 0.00 30.49 2.40
439 440 3.003068 CAGAACCGATGGATCTTGCAATC 59.997 47.826 0.00 0.00 32.42 2.67
440 441 2.947652 CAGAACCGATGGATCTTGCAAT 59.052 45.455 0.00 0.00 32.42 3.56
441 442 2.358957 CAGAACCGATGGATCTTGCAA 58.641 47.619 0.00 0.00 32.42 4.08
442 443 1.407299 CCAGAACCGATGGATCTTGCA 60.407 52.381 0.00 0.00 40.51 4.08
443 444 1.303309 CCAGAACCGATGGATCTTGC 58.697 55.000 0.00 0.00 40.51 4.01
444 445 1.134280 AGCCAGAACCGATGGATCTTG 60.134 52.381 0.00 0.00 40.51 3.02
445 446 1.207791 AGCCAGAACCGATGGATCTT 58.792 50.000 0.00 0.00 40.51 2.40
446 447 1.134280 CAAGCCAGAACCGATGGATCT 60.134 52.381 0.00 0.00 40.51 2.75
447 448 1.303309 CAAGCCAGAACCGATGGATC 58.697 55.000 0.00 0.00 40.51 3.36
448 449 0.107017 CCAAGCCAGAACCGATGGAT 60.107 55.000 0.00 0.00 40.51 3.41
449 450 1.299648 CCAAGCCAGAACCGATGGA 59.700 57.895 0.00 0.00 40.51 3.41
450 451 0.251916 TACCAAGCCAGAACCGATGG 59.748 55.000 0.00 0.00 41.04 3.51
451 452 1.369625 GTACCAAGCCAGAACCGATG 58.630 55.000 0.00 0.00 0.00 3.84
452 453 0.108329 CGTACCAAGCCAGAACCGAT 60.108 55.000 0.00 0.00 0.00 4.18
453 454 1.290955 CGTACCAAGCCAGAACCGA 59.709 57.895 0.00 0.00 0.00 4.69
454 455 2.388232 GCGTACCAAGCCAGAACCG 61.388 63.158 0.00 0.00 0.00 4.44
455 456 0.887387 TTGCGTACCAAGCCAGAACC 60.887 55.000 0.00 0.00 0.00 3.62
456 457 0.948678 TTTGCGTACCAAGCCAGAAC 59.051 50.000 0.00 0.00 34.34 3.01
457 458 1.681538 TTTTGCGTACCAAGCCAGAA 58.318 45.000 0.00 0.00 34.34 3.02
458 459 1.681538 TTTTTGCGTACCAAGCCAGA 58.318 45.000 0.00 0.00 34.34 3.86
474 475 7.309012 GGGTATAAAGAAAAGGCTCTCGTTTTT 60.309 37.037 3.74 0.00 39.51 1.94
475 476 6.150641 GGGTATAAAGAAAAGGCTCTCGTTTT 59.849 38.462 3.74 0.00 41.35 2.43
476 477 5.646793 GGGTATAAAGAAAAGGCTCTCGTTT 59.353 40.000 3.74 0.00 32.27 3.60
477 478 5.183969 GGGTATAAAGAAAAGGCTCTCGTT 58.816 41.667 0.00 0.00 0.00 3.85
478 479 4.679905 CGGGTATAAAGAAAAGGCTCTCGT 60.680 45.833 0.00 0.00 0.00 4.18
479 480 3.802685 CGGGTATAAAGAAAAGGCTCTCG 59.197 47.826 0.00 0.00 0.00 4.04
480 481 4.767478 ACGGGTATAAAGAAAAGGCTCTC 58.233 43.478 0.00 0.00 0.00 3.20
481 482 4.838904 ACGGGTATAAAGAAAAGGCTCT 57.161 40.909 0.00 0.00 0.00 4.09
482 483 4.698780 ACAACGGGTATAAAGAAAAGGCTC 59.301 41.667 0.00 0.00 0.00 4.70
483 484 4.659115 ACAACGGGTATAAAGAAAAGGCT 58.341 39.130 0.00 0.00 0.00 4.58
484 485 4.436451 CGACAACGGGTATAAAGAAAAGGC 60.436 45.833 0.00 0.00 35.72 4.35
485 486 4.436451 GCGACAACGGGTATAAAGAAAAGG 60.436 45.833 0.00 0.00 40.15 3.11
486 487 4.436451 GGCGACAACGGGTATAAAGAAAAG 60.436 45.833 0.00 0.00 40.15 2.27
487 488 3.436359 GGCGACAACGGGTATAAAGAAAA 59.564 43.478 0.00 0.00 40.15 2.29
488 489 3.002102 GGCGACAACGGGTATAAAGAAA 58.998 45.455 0.00 0.00 40.15 2.52
489 490 2.028294 TGGCGACAACGGGTATAAAGAA 60.028 45.455 0.00 0.00 40.15 2.52
490 491 1.549620 TGGCGACAACGGGTATAAAGA 59.450 47.619 0.00 0.00 40.15 2.52
491 492 2.012937 TGGCGACAACGGGTATAAAG 57.987 50.000 0.00 0.00 40.15 1.85
503 504 0.749818 TTTTGCAGTCCTTGGCGACA 60.750 50.000 0.00 0.00 35.07 4.35
504 505 0.383949 TTTTTGCAGTCCTTGGCGAC 59.616 50.000 0.00 0.00 0.00 5.19
505 506 2.800516 TTTTTGCAGTCCTTGGCGA 58.199 47.368 0.00 0.00 0.00 5.54
520 521 1.447217 GCAGCAAGCAGGGGTTTTT 59.553 52.632 0.00 0.00 44.79 1.94
521 522 3.141449 GCAGCAAGCAGGGGTTTT 58.859 55.556 0.00 0.00 44.79 2.43
546 547 2.693074 ACACCATTTGCCTCTCGTTTTT 59.307 40.909 0.00 0.00 0.00 1.94
547 548 2.306847 ACACCATTTGCCTCTCGTTTT 58.693 42.857 0.00 0.00 0.00 2.43
548 549 1.981256 ACACCATTTGCCTCTCGTTT 58.019 45.000 0.00 0.00 0.00 3.60
549 550 1.608590 CAACACCATTTGCCTCTCGTT 59.391 47.619 0.00 0.00 0.00 3.85
550 551 1.238439 CAACACCATTTGCCTCTCGT 58.762 50.000 0.00 0.00 0.00 4.18
551 552 0.523072 CCAACACCATTTGCCTCTCG 59.477 55.000 0.00 0.00 0.00 4.04
570 571 2.096799 GCACTGCGCTAATTCATGTC 57.903 50.000 9.73 0.00 37.77 3.06
599 600 4.082571 CCTAACCACTCATTCCAAAAGCTG 60.083 45.833 0.00 0.00 0.00 4.24
608 609 3.189287 CAGCAACACCTAACCACTCATTC 59.811 47.826 0.00 0.00 0.00 2.67
630 631 4.419522 TCGGAGAAAGTAAAGCATTTGC 57.580 40.909 0.00 0.00 39.63 3.68
641 642 6.854091 ACCTCTTTTAGTATCGGAGAAAGT 57.146 37.500 0.00 0.00 43.58 2.66
645 646 6.888632 ACACTTACCTCTTTTAGTATCGGAGA 59.111 38.462 0.00 0.00 45.75 3.71
662 663 9.988350 CTTTATTCACATGTGATAACACTTACC 57.012 33.333 28.32 0.00 46.07 2.85
666 667 8.321353 TCCTCTTTATTCACATGTGATAACACT 58.679 33.333 28.32 11.80 46.07 3.55
712 713 5.868801 CCAAATGTTCTTGTCTCTCTCTCTC 59.131 44.000 0.00 0.00 0.00 3.20
713 714 5.792741 CCAAATGTTCTTGTCTCTCTCTCT 58.207 41.667 0.00 0.00 0.00 3.10
714 715 4.391523 GCCAAATGTTCTTGTCTCTCTCTC 59.608 45.833 0.00 0.00 0.00 3.20
727 731 4.815846 ACACAAAATTCCTGCCAAATGTTC 59.184 37.500 0.00 0.00 0.00 3.18
816 2633 5.932619 TTGCTGAGTCTAGGCAAATACTA 57.067 39.130 13.36 0.00 41.96 1.82
838 2655 5.712446 GGAGAGGCAAATACTCTTCCTTTTT 59.288 40.000 0.00 0.00 44.89 1.94
843 2660 2.431057 TCGGAGAGGCAAATACTCTTCC 59.569 50.000 0.00 0.00 44.89 3.46
844 2661 3.802948 TCGGAGAGGCAAATACTCTTC 57.197 47.619 0.00 0.00 44.89 2.87
879 2696 0.589729 CAATACTGAATGCGCGCCAC 60.590 55.000 30.77 19.56 0.00 5.01
887 2704 4.019174 AGGAACAAGGGCAATACTGAATG 58.981 43.478 0.00 0.00 0.00 2.67
907 2724 1.294659 GCCAGCAGAACGAACTGAGG 61.295 60.000 15.12 15.04 39.94 3.86
1130 2947 1.919956 GAGGAAAGTCTCGTCCGCGA 61.920 60.000 8.23 0.00 45.79 5.87
1218 3035 3.413300 GTGTTGGGCCGGGGGATA 61.413 66.667 2.18 0.00 0.00 2.59
1227 3044 0.690762 TGTAGGAGAAGGTGTTGGGC 59.309 55.000 0.00 0.00 0.00 5.36
1598 3415 0.036010 CATTGCCTCGAACACCCTCT 60.036 55.000 0.00 0.00 0.00 3.69
1689 3506 3.646162 TCATCCTGACAAACAGTACCAGT 59.354 43.478 0.00 0.00 44.40 4.00
1731 3548 2.158769 ACTTGCAAGTGTCACCTCATCA 60.159 45.455 30.66 0.00 37.98 3.07
1788 3605 1.079127 ATGAACCTGCCGTCCTTCG 60.079 57.895 0.00 0.00 39.52 3.79
1809 3626 2.483876 CTATCGGATTTCACCACGCAT 58.516 47.619 0.00 0.00 0.00 4.73
2010 3827 2.863137 GACATTCTTCTCGACCATCTGC 59.137 50.000 0.00 0.00 0.00 4.26
2073 3890 0.395862 TAAGTGCCTCCTCCTCCTCG 60.396 60.000 0.00 0.00 0.00 4.63
2217 4034 1.871039 TCGAAGCGAAAACCTTCCTTG 59.129 47.619 0.00 0.00 36.26 3.61
2235 4052 1.613925 TCAGACTCTGGTCCAAAGTCG 59.386 52.381 17.85 13.29 43.30 4.18
2328 4145 2.108566 CTGGCTGCCATCCTCTCG 59.891 66.667 23.64 4.46 30.82 4.04
2431 4248 1.584380 GGGCTCTCTTTGCTGCACAG 61.584 60.000 9.47 9.47 0.00 3.66
2433 4250 1.584380 CTGGGCTCTCTTTGCTGCAC 61.584 60.000 0.00 0.00 0.00 4.57
2562 4379 8.477256 TCAATCATACATGTGTAGTGATCTTGA 58.523 33.333 9.11 11.39 32.69 3.02
2691 4508 8.762645 CCCATCTCAATATTCTTATGTAGCCTA 58.237 37.037 0.00 0.00 0.00 3.93
2993 4810 5.009710 CCATCAGCATTTTCAGCATCTACAT 59.990 40.000 0.00 0.00 0.00 2.29
3107 4924 5.287674 TGCCATTTTTCTTTTCATCACCA 57.712 34.783 0.00 0.00 0.00 4.17
3161 4978 0.103572 CCAAGCAAAACTGCTGCACT 59.896 50.000 0.00 0.00 45.54 4.40
3506 5324 3.254411 GGCTTGTTTGCTAGCTTCTCTTT 59.746 43.478 17.23 0.00 41.90 2.52
3823 5641 3.177884 TGCTTGGCCACCACCTCT 61.178 61.111 3.88 0.00 30.78 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.