Multiple sequence alignment - TraesCS2B01G322800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G322800 chr2B 100.000 2925 0 0 1 2925 461524871 461521947 0.000000e+00 5402.0
1 TraesCS2B01G322800 chr2B 88.488 443 45 6 1691 2131 629596575 629597013 5.550000e-147 531.0
2 TraesCS2B01G322800 chr2B 84.828 290 36 5 1363 1646 629494362 629494649 4.770000e-73 285.0
3 TraesCS2B01G322800 chr2B 77.935 494 61 29 1939 2409 629499389 629499857 6.220000e-67 265.0
4 TraesCS2B01G322800 chr2B 86.752 234 28 2 2692 2925 461244262 461244032 1.040000e-64 257.0
5 TraesCS2B01G322800 chr2B 83.513 279 35 2 1363 1630 629596294 629596572 1.740000e-62 250.0
6 TraesCS2B01G322800 chr2B 90.090 111 7 2 816 926 461524001 461523895 1.090000e-29 141.0
7 TraesCS2B01G322800 chr2B 90.090 111 7 2 871 977 461524056 461523946 1.090000e-29 141.0
8 TraesCS2B01G322800 chr2B 88.889 90 10 0 1363 1452 629441320 629441409 8.570000e-21 111.0
9 TraesCS2B01G322800 chr2D 96.572 2917 35 15 14 2925 390397114 390394258 0.000000e+00 4772.0
10 TraesCS2B01G322800 chr2D 80.040 496 61 20 1939 2409 529610194 529610676 1.680000e-87 333.0
11 TraesCS2B01G322800 chr2D 90.991 111 6 2 816 926 390396302 390396196 2.350000e-31 147.0
12 TraesCS2B01G322800 chr2D 90.991 111 6 2 871 977 390396357 390396247 2.350000e-31 147.0
13 TraesCS2B01G322800 chr2D 91.111 90 8 0 1363 1452 529601924 529602013 3.960000e-24 122.0
14 TraesCS2B01G322800 chr2A 93.327 2068 77 22 871 2925 526345675 526343656 0.000000e+00 2998.0
15 TraesCS2B01G322800 chr2A 86.486 666 43 16 225 873 526346253 526345618 0.000000e+00 688.0
16 TraesCS2B01G322800 chr2A 82.383 386 44 18 2376 2750 526254268 526253896 6.080000e-82 315.0
17 TraesCS2B01G322800 chr2A 86.081 273 32 3 1363 1631 674181261 674181531 3.690000e-74 289.0
18 TraesCS2B01G322800 chr2A 84.138 290 39 4 1363 1646 674089839 674090127 1.030000e-69 274.0
19 TraesCS2B01G322800 chr2A 84.861 251 22 2 1691 1941 674181533 674181767 3.770000e-59 239.0
20 TraesCS2B01G322800 chr2A 90.476 105 6 2 3 103 526346760 526346656 5.080000e-28 135.0
21 TraesCS2B01G322800 chr2A 91.111 90 7 1 1363 1452 674070911 674070999 1.420000e-23 121.0
22 TraesCS2B01G322800 chr2A 92.771 83 5 1 2328 2409 674162991 674163073 5.120000e-23 119.0
23 TraesCS2B01G322800 chr4B 84.115 1322 166 29 1612 2925 27656808 27655523 0.000000e+00 1238.0
24 TraesCS2B01G322800 chr4B 87.295 244 26 2 2682 2925 27867995 27868233 1.030000e-69 274.0
25 TraesCS2B01G322800 chr4D 87.600 250 25 3 2677 2925 16023917 16024161 4.770000e-73 285.0
26 TraesCS2B01G322800 chr1B 87.069 232 24 5 2695 2923 38579975 38579747 1.040000e-64 257.0
27 TraesCS2B01G322800 chr4A 90.090 111 10 1 1818 1928 684914574 684914683 3.040000e-30 143.0
28 TraesCS2B01G322800 chr4A 97.059 34 0 1 179 212 711474450 711474482 4.070000e-04 56.5
29 TraesCS2B01G322800 chr5B 100.000 29 0 0 179 207 447153745 447153773 1.000000e-03 54.7
30 TraesCS2B01G322800 chr3A 100.000 28 0 0 183 210 132585030 132585057 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G322800 chr2B 461521947 461524871 2924 True 1894.666667 5402 93.393333 1 2925 3 chr2B.!!$R2 2924
1 TraesCS2B01G322800 chr2B 629596294 629597013 719 False 390.500000 531 86.000500 1363 2131 2 chr2B.!!$F4 768
2 TraesCS2B01G322800 chr2D 390394258 390397114 2856 True 1688.666667 4772 92.851333 14 2925 3 chr2D.!!$R1 2911
3 TraesCS2B01G322800 chr2A 526343656 526346760 3104 True 1273.666667 2998 90.096333 3 2925 3 chr2A.!!$R2 2922
4 TraesCS2B01G322800 chr2A 674181261 674181767 506 False 264.000000 289 85.471000 1363 1941 2 chr2A.!!$F4 578
5 TraesCS2B01G322800 chr4B 27655523 27656808 1285 True 1238.000000 1238 84.115000 1612 2925 1 chr4B.!!$R1 1313

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
528 831 1.133869 GAACGCGATTTGTTCCGGG 59.866 57.895 15.93 0.0 39.80 5.73 F
565 868 1.538512 CGAACTCGACTGGTCCTTGTA 59.461 52.381 0.00 0.0 43.02 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1390 1768 0.460987 GCATCCACTGGAGAACCTCG 60.461 60.000 3.62 0.0 34.05 4.63 R
2427 2846 1.607467 GGAGCACACAGGGCCAATT 60.607 57.895 6.18 0.0 0.00 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
176 182 1.231641 CTCTCCGGTCTCCCATCCT 59.768 63.158 0.00 0.00 0.00 3.24
273 559 5.163652 CCGTTTGTTGGTTCTTCTTCTTCTT 60.164 40.000 0.00 0.00 0.00 2.52
276 568 6.683974 TTGTTGGTTCTTCTTCTTCTTCTG 57.316 37.500 0.00 0.00 0.00 3.02
282 574 5.304778 GTTCTTCTTCTTCTTCTGCTCCTT 58.695 41.667 0.00 0.00 0.00 3.36
469 772 4.142730 GCAAGAGTGTGTTGATCCTGAATC 60.143 45.833 0.00 0.00 34.72 2.52
501 804 6.109359 CCGGAAGATTGGAGGTCAATATATC 58.891 44.000 0.00 0.00 45.36 1.63
528 831 1.133869 GAACGCGATTTGTTCCGGG 59.866 57.895 15.93 0.00 39.80 5.73
550 853 6.465084 GGGTAATATCTAATTGAGGCGAACT 58.535 40.000 0.00 0.00 0.00 3.01
565 868 1.538512 CGAACTCGACTGGTCCTTGTA 59.461 52.381 0.00 0.00 43.02 2.41
730 1036 7.766219 ATTACTCGCATAGTTTTCGTTATGT 57.234 32.000 0.00 0.00 39.80 2.29
871 1247 3.189287 CAGTCCCTTATTCACACTGCAAC 59.811 47.826 0.00 0.00 0.00 4.17
872 1248 3.073062 AGTCCCTTATTCACACTGCAACT 59.927 43.478 0.00 0.00 0.00 3.16
873 1249 3.821033 GTCCCTTATTCACACTGCAACTT 59.179 43.478 0.00 0.00 0.00 2.66
874 1250 5.001232 GTCCCTTATTCACACTGCAACTTA 58.999 41.667 0.00 0.00 0.00 2.24
875 1251 5.122396 GTCCCTTATTCACACTGCAACTTAG 59.878 44.000 0.00 0.00 0.00 2.18
876 1252 5.003804 CCCTTATTCACACTGCAACTTAGT 58.996 41.667 0.00 0.00 0.00 2.24
877 1253 5.473504 CCCTTATTCACACTGCAACTTAGTT 59.526 40.000 0.00 0.00 0.00 2.24
878 1254 6.016276 CCCTTATTCACACTGCAACTTAGTTT 60.016 38.462 0.00 0.00 0.00 2.66
879 1255 6.857964 CCTTATTCACACTGCAACTTAGTTTG 59.142 38.462 0.00 0.00 0.00 2.93
880 1256 7.255104 CCTTATTCACACTGCAACTTAGTTTGA 60.255 37.037 0.00 0.00 34.18 2.69
881 1257 5.888691 TTCACACTGCAACTTAGTTTGAA 57.111 34.783 0.00 0.00 40.53 2.69
882 1258 5.229921 TCACACTGCAACTTAGTTTGAAC 57.770 39.130 0.00 0.00 33.36 3.18
883 1259 4.028383 CACACTGCAACTTAGTTTGAACG 58.972 43.478 0.00 0.00 29.56 3.95
884 1260 3.936453 ACACTGCAACTTAGTTTGAACGA 59.064 39.130 0.00 0.00 0.00 3.85
885 1261 4.393680 ACACTGCAACTTAGTTTGAACGAA 59.606 37.500 0.00 0.00 0.00 3.85
886 1262 4.728608 CACTGCAACTTAGTTTGAACGAAC 59.271 41.667 0.00 0.00 0.00 3.95
887 1263 4.634443 ACTGCAACTTAGTTTGAACGAACT 59.366 37.500 11.45 11.45 42.27 3.01
888 1264 5.123344 ACTGCAACTTAGTTTGAACGAACTT 59.877 36.000 11.89 0.00 40.24 2.66
889 1265 5.945155 TGCAACTTAGTTTGAACGAACTTT 58.055 33.333 11.89 0.02 40.24 2.66
890 1266 6.025280 TGCAACTTAGTTTGAACGAACTTTC 58.975 36.000 11.89 0.00 40.24 2.62
891 1267 5.454554 GCAACTTAGTTTGAACGAACTTTCC 59.545 40.000 11.89 0.00 40.24 3.13
892 1268 6.548171 CAACTTAGTTTGAACGAACTTTCCA 58.452 36.000 11.89 0.00 40.24 3.53
893 1269 6.937436 ACTTAGTTTGAACGAACTTTCCAT 57.063 33.333 11.89 0.00 40.24 3.41
894 1270 7.329588 ACTTAGTTTGAACGAACTTTCCATT 57.670 32.000 11.89 0.00 40.24 3.16
895 1271 7.768240 ACTTAGTTTGAACGAACTTTCCATTT 58.232 30.769 11.89 0.00 40.24 2.32
896 1272 8.248253 ACTTAGTTTGAACGAACTTTCCATTTT 58.752 29.630 11.89 0.00 40.24 1.82
897 1273 8.989653 TTAGTTTGAACGAACTTTCCATTTTT 57.010 26.923 11.89 0.00 40.24 1.94
898 1274 7.520119 AGTTTGAACGAACTTTCCATTTTTC 57.480 32.000 2.01 0.00 36.49 2.29
899 1275 6.533723 AGTTTGAACGAACTTTCCATTTTTCC 59.466 34.615 2.01 0.00 36.49 3.13
900 1276 5.584253 TGAACGAACTTTCCATTTTTCCA 57.416 34.783 0.00 0.00 0.00 3.53
901 1277 6.155475 TGAACGAACTTTCCATTTTTCCAT 57.845 33.333 0.00 0.00 0.00 3.41
902 1278 6.212955 TGAACGAACTTTCCATTTTTCCATC 58.787 36.000 0.00 0.00 0.00 3.51
903 1279 5.782893 ACGAACTTTCCATTTTTCCATCA 57.217 34.783 0.00 0.00 0.00 3.07
904 1280 5.528870 ACGAACTTTCCATTTTTCCATCAC 58.471 37.500 0.00 0.00 0.00 3.06
905 1281 5.068460 ACGAACTTTCCATTTTTCCATCACA 59.932 36.000 0.00 0.00 0.00 3.58
906 1282 5.630680 CGAACTTTCCATTTTTCCATCACAG 59.369 40.000 0.00 0.00 0.00 3.66
907 1283 6.484364 AACTTTCCATTTTTCCATCACAGT 57.516 33.333 0.00 0.00 0.00 3.55
908 1284 6.089249 ACTTTCCATTTTTCCATCACAGTC 57.911 37.500 0.00 0.00 0.00 3.51
909 1285 5.011023 ACTTTCCATTTTTCCATCACAGTCC 59.989 40.000 0.00 0.00 0.00 3.85
910 1286 3.430453 TCCATTTTTCCATCACAGTCCC 58.570 45.455 0.00 0.00 0.00 4.46
911 1287 3.075882 TCCATTTTTCCATCACAGTCCCT 59.924 43.478 0.00 0.00 0.00 4.20
912 1288 3.834231 CCATTTTTCCATCACAGTCCCTT 59.166 43.478 0.00 0.00 0.00 3.95
913 1289 5.016173 CCATTTTTCCATCACAGTCCCTTA 58.984 41.667 0.00 0.00 0.00 2.69
914 1290 5.658190 CCATTTTTCCATCACAGTCCCTTAT 59.342 40.000 0.00 0.00 0.00 1.73
915 1291 6.155049 CCATTTTTCCATCACAGTCCCTTATT 59.845 38.462 0.00 0.00 0.00 1.40
916 1292 6.834168 TTTTTCCATCACAGTCCCTTATTC 57.166 37.500 0.00 0.00 0.00 1.75
917 1293 5.512942 TTTCCATCACAGTCCCTTATTCA 57.487 39.130 0.00 0.00 0.00 2.57
918 1294 4.487714 TCCATCACAGTCCCTTATTCAC 57.512 45.455 0.00 0.00 0.00 3.18
919 1295 3.843619 TCCATCACAGTCCCTTATTCACA 59.156 43.478 0.00 0.00 0.00 3.58
920 1296 3.941483 CCATCACAGTCCCTTATTCACAC 59.059 47.826 0.00 0.00 0.00 3.82
921 1297 4.323792 CCATCACAGTCCCTTATTCACACT 60.324 45.833 0.00 0.00 0.00 3.55
922 1298 4.271696 TCACAGTCCCTTATTCACACTG 57.728 45.455 0.00 0.00 40.33 3.66
923 1299 2.744202 CACAGTCCCTTATTCACACTGC 59.256 50.000 0.00 0.00 38.44 4.40
924 1300 2.371841 ACAGTCCCTTATTCACACTGCA 59.628 45.455 0.00 0.00 38.44 4.41
925 1301 3.181445 ACAGTCCCTTATTCACACTGCAA 60.181 43.478 0.00 0.00 38.44 4.08
926 1302 3.189287 CAGTCCCTTATTCACACTGCAAC 59.811 47.826 0.00 0.00 0.00 4.17
927 1303 3.073062 AGTCCCTTATTCACACTGCAACT 59.927 43.478 0.00 0.00 0.00 3.16
928 1304 3.821033 GTCCCTTATTCACACTGCAACTT 59.179 43.478 0.00 0.00 0.00 2.66
929 1305 5.001232 GTCCCTTATTCACACTGCAACTTA 58.999 41.667 0.00 0.00 0.00 2.24
930 1306 5.122396 GTCCCTTATTCACACTGCAACTTAG 59.878 44.000 0.00 0.00 0.00 2.18
931 1307 5.003804 CCCTTATTCACACTGCAACTTAGT 58.996 41.667 0.00 0.00 0.00 2.24
932 1308 5.473504 CCCTTATTCACACTGCAACTTAGTT 59.526 40.000 0.00 0.00 0.00 2.24
933 1309 6.016276 CCCTTATTCACACTGCAACTTAGTTT 60.016 38.462 0.00 0.00 0.00 2.66
934 1310 6.857964 CCTTATTCACACTGCAACTTAGTTTG 59.142 38.462 0.00 0.00 0.00 2.93
935 1311 7.255104 CCTTATTCACACTGCAACTTAGTTTGA 60.255 37.037 0.00 0.00 34.18 2.69
936 1312 5.484173 TTCACACTGCAACTTAGTTTGAG 57.516 39.130 0.00 0.00 36.54 3.02
937 1313 3.312421 TCACACTGCAACTTAGTTTGAGC 59.688 43.478 0.00 0.00 31.85 4.26
938 1314 2.287915 ACACTGCAACTTAGTTTGAGCG 59.712 45.455 0.00 0.00 0.00 5.03
939 1315 2.543848 CACTGCAACTTAGTTTGAGCGA 59.456 45.455 0.00 0.00 0.00 4.93
940 1316 2.802816 ACTGCAACTTAGTTTGAGCGAG 59.197 45.455 0.00 0.46 0.00 5.03
1390 1768 2.614057 CGAAATCCAGCCTGTGAATACC 59.386 50.000 0.00 0.00 0.00 2.73
1402 1780 2.496070 TGTGAATACCGAGGTTCTCCAG 59.504 50.000 0.00 0.00 35.89 3.86
1924 2325 6.222389 TCGAACCTTGTTCCGAAAATACTAA 58.778 36.000 1.66 0.00 0.00 2.24
2064 2471 8.722394 GGTTCCTGAGAGTTTTGTTTTCTATAG 58.278 37.037 0.00 0.00 0.00 1.31
2096 2504 2.028112 TCCAATGTCGCTGTTTAGAGCT 60.028 45.455 0.00 0.00 36.77 4.09
2798 3227 1.144691 TGATCCCCTTGTGGTTGTCA 58.855 50.000 0.00 0.00 0.00 3.58
2841 3270 9.416794 CGTCTATTTATACATCAGAGCTGAAAT 57.583 33.333 4.06 1.84 43.58 2.17
2861 3290 6.041409 TGAAATACTTTGTCCAGCAATTCCAA 59.959 34.615 0.00 0.00 36.89 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.181440 TGTCACTCTCCTTTCCTTTGCAT 60.181 43.478 0.00 0.00 0.00 3.96
1 2 2.172505 TGTCACTCTCCTTTCCTTTGCA 59.827 45.455 0.00 0.00 0.00 4.08
59 60 3.220110 ACGTCTGAAGTGAACTACTCCA 58.780 45.455 0.00 0.00 39.18 3.86
208 214 4.135153 CTGGTGAGGAGTCGCGGG 62.135 72.222 6.13 0.00 33.62 6.13
221 227 0.489567 AGAGAAGGGACTCACCTGGT 59.510 55.000 0.00 0.00 40.87 4.00
273 559 1.075482 CCCAGCCAAAAGGAGCAGA 59.925 57.895 0.00 0.00 0.00 4.26
276 568 0.251165 TACACCCAGCCAAAAGGAGC 60.251 55.000 0.00 0.00 0.00 4.70
282 574 1.074072 ACGCATACACCCAGCCAAA 59.926 52.632 0.00 0.00 0.00 3.28
469 772 1.064758 TCCAATCTTCCGGGTTCATGG 60.065 52.381 0.00 5.86 0.00 3.66
501 804 0.238289 AAATCGCGTTCCAGTGCAAG 59.762 50.000 5.77 0.00 0.00 4.01
528 831 7.060864 GTCGAGTTCGCCTCAATTAGATATTAC 59.939 40.741 0.00 0.00 40.48 1.89
550 853 4.025040 TCTAAGTACAAGGACCAGTCGA 57.975 45.455 0.00 0.00 0.00 4.20
565 868 7.547370 GTCTGCATCTCACTACAAATTCTAAGT 59.453 37.037 0.00 0.00 0.00 2.24
730 1036 6.046593 CAGTGGGCGTATTTTCAGATAGTTA 58.953 40.000 0.00 0.00 0.00 2.24
791 1097 2.090550 TCTCTGGGAATAGATGGGAGCA 60.091 50.000 0.00 0.00 0.00 4.26
871 1247 8.628882 AAAATGGAAAGTTCGTTCAAACTAAG 57.371 30.769 1.64 0.00 38.52 2.18
872 1248 8.989653 AAAAATGGAAAGTTCGTTCAAACTAA 57.010 26.923 1.64 0.00 38.52 2.24
873 1249 7.703197 GGAAAAATGGAAAGTTCGTTCAAACTA 59.297 33.333 1.64 0.00 38.52 2.24
874 1250 6.533723 GGAAAAATGGAAAGTTCGTTCAAACT 59.466 34.615 1.64 0.00 41.20 2.66
875 1251 6.311690 TGGAAAAATGGAAAGTTCGTTCAAAC 59.688 34.615 1.64 0.00 0.00 2.93
876 1252 6.398918 TGGAAAAATGGAAAGTTCGTTCAAA 58.601 32.000 1.64 0.00 0.00 2.69
877 1253 5.967088 TGGAAAAATGGAAAGTTCGTTCAA 58.033 33.333 1.64 0.00 0.00 2.69
878 1254 5.584253 TGGAAAAATGGAAAGTTCGTTCA 57.416 34.783 1.64 0.00 0.00 3.18
879 1255 6.143919 GTGATGGAAAAATGGAAAGTTCGTTC 59.856 38.462 0.00 0.00 0.00 3.95
880 1256 5.983118 GTGATGGAAAAATGGAAAGTTCGTT 59.017 36.000 0.00 0.00 0.00 3.85
881 1257 5.068460 TGTGATGGAAAAATGGAAAGTTCGT 59.932 36.000 0.00 0.00 0.00 3.85
882 1258 5.527951 TGTGATGGAAAAATGGAAAGTTCG 58.472 37.500 0.00 0.00 0.00 3.95
883 1259 6.515832 ACTGTGATGGAAAAATGGAAAGTTC 58.484 36.000 0.00 0.00 0.00 3.01
884 1260 6.462909 GGACTGTGATGGAAAAATGGAAAGTT 60.463 38.462 0.00 0.00 0.00 2.66
885 1261 5.011023 GGACTGTGATGGAAAAATGGAAAGT 59.989 40.000 0.00 0.00 0.00 2.66
886 1262 5.473039 GGACTGTGATGGAAAAATGGAAAG 58.527 41.667 0.00 0.00 0.00 2.62
887 1263 4.283212 GGGACTGTGATGGAAAAATGGAAA 59.717 41.667 0.00 0.00 0.00 3.13
888 1264 3.831911 GGGACTGTGATGGAAAAATGGAA 59.168 43.478 0.00 0.00 0.00 3.53
889 1265 3.075882 AGGGACTGTGATGGAAAAATGGA 59.924 43.478 0.00 0.00 37.18 3.41
890 1266 3.434309 AGGGACTGTGATGGAAAAATGG 58.566 45.455 0.00 0.00 37.18 3.16
891 1267 6.780457 ATAAGGGACTGTGATGGAAAAATG 57.220 37.500 0.00 0.00 40.86 2.32
892 1268 6.953520 TGAATAAGGGACTGTGATGGAAAAAT 59.046 34.615 0.00 0.00 40.86 1.82
893 1269 6.208599 GTGAATAAGGGACTGTGATGGAAAAA 59.791 38.462 0.00 0.00 40.86 1.94
894 1270 5.710099 GTGAATAAGGGACTGTGATGGAAAA 59.290 40.000 0.00 0.00 40.86 2.29
895 1271 5.222027 TGTGAATAAGGGACTGTGATGGAAA 60.222 40.000 0.00 0.00 40.86 3.13
896 1272 4.288366 TGTGAATAAGGGACTGTGATGGAA 59.712 41.667 0.00 0.00 40.86 3.53
897 1273 3.843619 TGTGAATAAGGGACTGTGATGGA 59.156 43.478 0.00 0.00 40.86 3.41
898 1274 3.941483 GTGTGAATAAGGGACTGTGATGG 59.059 47.826 0.00 0.00 40.86 3.51
899 1275 4.633126 CAGTGTGAATAAGGGACTGTGATG 59.367 45.833 0.00 0.00 40.86 3.07
900 1276 4.836825 CAGTGTGAATAAGGGACTGTGAT 58.163 43.478 0.00 0.00 40.86 3.06
901 1277 3.557054 GCAGTGTGAATAAGGGACTGTGA 60.557 47.826 0.00 0.00 40.86 3.58
902 1278 2.744202 GCAGTGTGAATAAGGGACTGTG 59.256 50.000 0.00 0.00 40.86 3.66
903 1279 2.371841 TGCAGTGTGAATAAGGGACTGT 59.628 45.455 0.00 0.00 40.86 3.55
904 1280 3.057969 TGCAGTGTGAATAAGGGACTG 57.942 47.619 0.00 0.00 40.86 3.51
906 1282 3.412386 AGTTGCAGTGTGAATAAGGGAC 58.588 45.455 0.00 0.00 0.00 4.46
907 1283 3.788227 AGTTGCAGTGTGAATAAGGGA 57.212 42.857 0.00 0.00 0.00 4.20
908 1284 5.003804 ACTAAGTTGCAGTGTGAATAAGGG 58.996 41.667 0.00 0.00 0.00 3.95
909 1285 6.560253 AACTAAGTTGCAGTGTGAATAAGG 57.440 37.500 0.00 0.00 0.00 2.69
910 1286 7.639039 TCAAACTAAGTTGCAGTGTGAATAAG 58.361 34.615 0.00 0.00 37.33 1.73
911 1287 7.561021 TCAAACTAAGTTGCAGTGTGAATAA 57.439 32.000 0.00 0.00 37.33 1.40
912 1288 6.293407 GCTCAAACTAAGTTGCAGTGTGAATA 60.293 38.462 1.27 0.00 39.26 1.75
913 1289 5.506317 GCTCAAACTAAGTTGCAGTGTGAAT 60.506 40.000 1.27 0.00 39.26 2.57
914 1290 4.201910 GCTCAAACTAAGTTGCAGTGTGAA 60.202 41.667 1.27 0.00 39.26 3.18
915 1291 3.312421 GCTCAAACTAAGTTGCAGTGTGA 59.688 43.478 0.00 0.00 37.82 3.58
916 1292 3.621794 GCTCAAACTAAGTTGCAGTGTG 58.378 45.455 0.00 0.00 33.27 3.82
917 1293 2.287915 CGCTCAAACTAAGTTGCAGTGT 59.712 45.455 0.00 0.00 0.00 3.55
918 1294 2.543848 TCGCTCAAACTAAGTTGCAGTG 59.456 45.455 0.00 0.00 0.00 3.66
919 1295 2.802816 CTCGCTCAAACTAAGTTGCAGT 59.197 45.455 0.00 0.00 0.00 4.40
920 1296 2.412065 GCTCGCTCAAACTAAGTTGCAG 60.412 50.000 0.00 0.00 0.00 4.41
921 1297 1.531149 GCTCGCTCAAACTAAGTTGCA 59.469 47.619 0.00 0.00 0.00 4.08
922 1298 1.801178 AGCTCGCTCAAACTAAGTTGC 59.199 47.619 0.00 0.00 0.00 4.17
923 1299 2.412065 GCAGCTCGCTCAAACTAAGTTG 60.412 50.000 1.48 0.00 37.77 3.16
924 1300 1.801178 GCAGCTCGCTCAAACTAAGTT 59.199 47.619 1.48 0.00 37.77 2.66
925 1301 1.433534 GCAGCTCGCTCAAACTAAGT 58.566 50.000 1.48 0.00 37.77 2.24
926 1302 0.723981 GGCAGCTCGCTCAAACTAAG 59.276 55.000 7.85 0.00 41.91 2.18
927 1303 0.673644 GGGCAGCTCGCTCAAACTAA 60.674 55.000 7.85 0.00 42.61 2.24
928 1304 1.079127 GGGCAGCTCGCTCAAACTA 60.079 57.895 7.85 0.00 42.61 2.24
929 1305 2.359230 GGGCAGCTCGCTCAAACT 60.359 61.111 7.85 0.00 42.61 2.66
934 1310 2.476320 GGAAATGGGCAGCTCGCTC 61.476 63.158 7.85 4.85 43.80 5.03
935 1311 2.439156 GGAAATGGGCAGCTCGCT 60.439 61.111 7.85 0.00 41.91 4.93
936 1312 3.521796 GGGAAATGGGCAGCTCGC 61.522 66.667 0.00 0.00 41.28 5.03
937 1313 1.450531 GATGGGAAATGGGCAGCTCG 61.451 60.000 0.00 0.00 0.00 5.03
938 1314 0.396139 TGATGGGAAATGGGCAGCTC 60.396 55.000 0.00 0.00 0.00 4.09
939 1315 0.263765 ATGATGGGAAATGGGCAGCT 59.736 50.000 0.00 0.00 0.00 4.24
940 1316 1.891150 CTATGATGGGAAATGGGCAGC 59.109 52.381 0.00 0.00 0.00 5.25
1032 1410 4.649674 AGTGAATACGGATGGTGATACAGT 59.350 41.667 0.00 0.00 0.00 3.55
1390 1768 0.460987 GCATCCACTGGAGAACCTCG 60.461 60.000 3.62 0.00 34.05 4.63
1402 1780 2.821969 ACCATCAACTTTCTGCATCCAC 59.178 45.455 0.00 0.00 0.00 4.02
1924 2325 2.534019 CGCAACACGCTGAACCACT 61.534 57.895 0.00 0.00 39.08 4.00
2064 2471 1.731720 GACATTGGAGCAGACAGGTC 58.268 55.000 0.00 0.00 43.99 3.85
2285 2704 7.231722 AGAGACTAAGCTCTCTAACAAACTTGA 59.768 37.037 1.53 0.00 44.43 3.02
2427 2846 1.607467 GGAGCACACAGGGCCAATT 60.607 57.895 6.18 0.00 0.00 2.32
2798 3227 2.035961 AGACGTGTTGTGCACTATGTCT 59.964 45.455 25.09 25.09 45.57 3.41
2841 3270 4.469657 AGTTGGAATTGCTGGACAAAGTA 58.530 39.130 0.00 0.00 42.86 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.