Multiple sequence alignment - TraesCS2B01G321500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G321500 chr2B 100.000 5880 0 0 1 5880 458627035 458621156 0.000000e+00 10859
1 TraesCS2B01G321500 chr2A 95.810 3604 115 15 213 3798 524147679 524144094 0.000000e+00 5786
2 TraesCS2B01G321500 chr2A 94.737 1121 33 6 4137 5239 524144001 524142889 0.000000e+00 1720
3 TraesCS2B01G321500 chr2A 98.750 80 1 0 3892 3971 524144095 524144016 6.140000e-30 143
4 TraesCS2B01G321500 chr2D 94.945 3521 109 26 16 3506 387561917 387558436 0.000000e+00 5452
5 TraesCS2B01G321500 chr2D 93.090 1259 54 9 4115 5366 387558017 387556785 0.000000e+00 1812
6 TraesCS2B01G321500 chr2D 97.135 349 10 0 3450 3798 387558443 387558095 1.830000e-164 590
7 TraesCS2B01G321500 chr2D 94.495 109 5 1 3793 3900 445894985 445894877 3.640000e-37 167
8 TraesCS2B01G321500 chr2D 90.984 122 11 0 3421 3542 623505253 623505132 1.310000e-36 165
9 TraesCS2B01G321500 chr2D 96.250 80 2 1 3892 3971 387558096 387558018 4.780000e-26 130
10 TraesCS2B01G321500 chr6D 99.315 146 1 0 3970 4115 458922090 458922235 1.260000e-66 265
11 TraesCS2B01G321500 chr5D 99.315 146 1 0 3970 4115 45207050 45206905 1.260000e-66 265
12 TraesCS2B01G321500 chr5D 99.315 146 1 0 3970 4115 503224994 503225139 1.260000e-66 265
13 TraesCS2B01G321500 chr5D 95.192 104 5 0 3790 3893 205794749 205794646 1.310000e-36 165
14 TraesCS2B01G321500 chr3D 99.315 146 1 0 3970 4115 598873192 598873337 1.260000e-66 265
15 TraesCS2B01G321500 chr3A 99.315 146 1 0 3970 4115 593322085 593321940 1.260000e-66 265
16 TraesCS2B01G321500 chr3A 99.315 146 1 0 3970 4115 750740340 750740195 1.260000e-66 265
17 TraesCS2B01G321500 chr1A 99.315 146 1 0 3970 4115 278527464 278527319 1.260000e-66 265
18 TraesCS2B01G321500 chr1A 95.327 107 5 0 3792 3898 238655888 238655782 2.820000e-38 171
19 TraesCS2B01G321500 chr1A 89.474 133 13 1 3416 3548 234234140 234234009 3.640000e-37 167
20 TraesCS2B01G321500 chrUn 98.630 146 2 0 3970 4115 217913938 217913793 5.850000e-65 259
21 TraesCS2B01G321500 chrUn 98.630 146 2 0 3970 4115 352978447 352978592 5.850000e-65 259
22 TraesCS2B01G321500 chr7D 93.130 131 9 0 3416 3546 185136524 185136394 6.010000e-45 193
23 TraesCS2B01G321500 chr7A 92.063 126 10 0 3416 3541 192667929 192667804 1.680000e-40 178
24 TraesCS2B01G321500 chr7A 90.769 130 12 0 3416 3545 701309238 701309109 2.180000e-39 174
25 TraesCS2B01G321500 chr4D 98.000 100 2 0 3794 3893 323929570 323929669 2.180000e-39 174
26 TraesCS2B01G321500 chr7B 97.959 98 2 0 3796 3893 588874916 588875013 2.820000e-38 171
27 TraesCS2B01G321500 chr6A 97.030 101 3 0 3793 3893 596589449 596589349 2.820000e-38 171
28 TraesCS2B01G321500 chr5B 96.154 104 4 0 3790 3893 78734329 78734432 2.820000e-38 171
29 TraesCS2B01G321500 chr5A 95.238 105 4 1 3789 3893 239529944 239529841 1.310000e-36 165
30 TraesCS2B01G321500 chr1B 96.939 98 3 0 3796 3893 606612825 606612922 1.310000e-36 165
31 TraesCS2B01G321500 chr6B 89.062 128 14 0 3415 3542 243245141 243245268 6.100000e-35 159


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G321500 chr2B 458621156 458627035 5879 True 10859.000000 10859 100.000000 1 5880 1 chr2B.!!$R1 5879
1 TraesCS2B01G321500 chr2A 524142889 524147679 4790 True 2549.666667 5786 96.432333 213 5239 3 chr2A.!!$R1 5026
2 TraesCS2B01G321500 chr2D 387556785 387561917 5132 True 1996.000000 5452 95.355000 16 5366 4 chr2D.!!$R3 5350

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
577 608 0.098025 CTGACTCTCGCCTTCGTCTC 59.902 60.000 0.00 0.0 36.96 3.36 F
1383 1440 0.617413 AGGCATCTGTGTCTGGGAAG 59.383 55.000 0.00 0.0 39.27 3.46 F
1665 1728 0.679960 ACGAATTGGGCCTACCTTGC 60.680 55.000 4.53 0.0 41.11 4.01 F
1672 1735 1.599797 GGCCTACCTTGCACAACGT 60.600 57.895 0.00 0.0 0.00 3.99 F
2786 2849 2.407090 ACGTACCTTTTACTGTTCGCC 58.593 47.619 0.00 0.0 0.00 5.54 F
3731 3843 0.473755 TGAGGTGTTGTGTGCAGGAT 59.526 50.000 0.00 0.0 0.00 3.24 F
3998 4110 0.035152 TGCCATTCCATGAGTCGCTT 60.035 50.000 0.00 0.0 0.00 4.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1650 1712 0.114168 TTGTGCAAGGTAGGCCCAAT 59.886 50.000 0.00 0.00 34.66 3.16 R
3290 3353 4.202141 ACTGTAAGATTGCAAAAGCAAGCA 60.202 37.500 18.80 7.35 38.39 3.91 R
3424 3487 4.787551 TCTAAGACAAGCTTTTTGGGACA 58.212 39.130 0.00 0.00 38.05 4.02 R
3702 3814 3.055094 ACACAACACCTCAAGAGAACTGT 60.055 43.478 0.00 0.00 0.00 3.55 R
3979 4091 0.035152 AAGCGACTCATGGAATGGCA 60.035 50.000 0.00 0.00 46.73 4.92 R
4801 4935 0.249911 GAAGCCACACGACCAACTCT 60.250 55.000 0.00 0.00 0.00 3.24 R
5368 5502 0.386478 CAAAAGCAGAACTGGCGCTC 60.386 55.000 7.64 0.00 34.11 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 9.625747 TCTTTTGCATATATTGTATGACCTTGA 57.374 29.630 4.74 0.00 0.00 3.02
103 109 9.853555 ATTTGACGTGCATTCATTTTATTTCTA 57.146 25.926 0.00 0.00 0.00 2.10
105 111 8.039603 TGACGTGCATTCATTTTATTTCTACT 57.960 30.769 0.00 0.00 0.00 2.57
112 118 7.644157 GCATTCATTTTATTTCTACTTCCGTCC 59.356 37.037 0.00 0.00 0.00 4.79
113 119 6.897259 TCATTTTATTTCTACTTCCGTCCG 57.103 37.500 0.00 0.00 0.00 4.79
115 121 6.532657 TCATTTTATTTCTACTTCCGTCCGTC 59.467 38.462 0.00 0.00 0.00 4.79
116 122 2.556534 ATTTCTACTTCCGTCCGTCG 57.443 50.000 0.00 0.00 39.52 5.12
117 123 0.109597 TTTCTACTTCCGTCCGTCGC 60.110 55.000 0.00 0.00 38.35 5.19
118 124 0.957395 TTCTACTTCCGTCCGTCGCT 60.957 55.000 0.00 0.00 38.35 4.93
119 125 1.226323 CTACTTCCGTCCGTCGCTG 60.226 63.158 0.00 0.00 38.35 5.18
136 142 1.766494 CTGATAAGGGCCACATTGCA 58.234 50.000 6.18 0.00 0.00 4.08
168 174 4.651008 TGGACGACGTGGCGAACC 62.651 66.667 4.58 5.64 34.83 3.62
206 212 3.380320 GCCGGCTGGACAAAAGTATATTT 59.620 43.478 22.15 0.00 37.49 1.40
207 213 4.497507 GCCGGCTGGACAAAAGTATATTTC 60.498 45.833 22.15 0.00 37.49 2.17
208 214 4.036380 CCGGCTGGACAAAAGTATATTTCC 59.964 45.833 5.28 0.00 37.49 3.13
209 215 4.036380 CGGCTGGACAAAAGTATATTTCCC 59.964 45.833 0.00 0.00 0.00 3.97
210 216 4.953579 GGCTGGACAAAAGTATATTTCCCA 59.046 41.667 0.00 0.00 0.00 4.37
211 217 5.420739 GGCTGGACAAAAGTATATTTCCCAA 59.579 40.000 0.00 0.00 0.00 4.12
354 368 2.158623 ACTTGGAACCATGAGCAGACAA 60.159 45.455 12.54 0.00 0.00 3.18
390 404 1.209275 GACGCGATCCACATTCGGAG 61.209 60.000 15.93 0.00 38.83 4.63
572 603 2.883253 GCGCTGACTCTCGCCTTC 60.883 66.667 0.00 0.00 45.01 3.46
573 604 2.578178 CGCTGACTCTCGCCTTCG 60.578 66.667 0.00 0.00 0.00 3.79
574 605 2.569134 GCTGACTCTCGCCTTCGT 59.431 61.111 0.00 0.00 36.96 3.85
575 606 1.515304 GCTGACTCTCGCCTTCGTC 60.515 63.158 0.00 0.00 36.96 4.20
576 607 1.928706 GCTGACTCTCGCCTTCGTCT 61.929 60.000 0.00 0.00 36.96 4.18
577 608 0.098025 CTGACTCTCGCCTTCGTCTC 59.902 60.000 0.00 0.00 36.96 3.36
578 609 1.061253 GACTCTCGCCTTCGTCTCG 59.939 63.158 0.00 0.00 36.96 4.04
579 610 2.312398 GACTCTCGCCTTCGTCTCGG 62.312 65.000 0.00 0.00 36.96 4.63
596 627 1.008361 CGGCCAATTCTTTTGTGCCG 61.008 55.000 18.63 18.63 45.31 5.69
808 854 3.560105 AGCTCTCTTTGGTTTCTTGCTT 58.440 40.909 0.00 0.00 0.00 3.91
918 964 3.748568 GGAGAATTCACGCTTTCTTCAGT 59.251 43.478 8.44 0.00 32.46 3.41
1060 1113 1.172180 GGTGCTGGTGCTTTGCAGTA 61.172 55.000 0.00 0.00 40.08 2.74
1079 1132 7.986704 TGCAGTATCTTACTAGGTAGGAGTAT 58.013 38.462 0.00 0.00 37.23 2.12
1096 1149 5.958987 AGGAGTATACTGGCTACTGAAAACT 59.041 40.000 10.90 0.00 29.67 2.66
1098 1151 7.785506 AGGAGTATACTGGCTACTGAAAACTAT 59.214 37.037 10.90 0.00 29.67 2.12
1227 1284 2.926200 CTCGATAGACCTTGCACACAAG 59.074 50.000 0.00 0.00 46.71 3.16
1266 1323 3.963428 TGGGAAGCTAAAGTGAGAGAC 57.037 47.619 0.00 0.00 0.00 3.36
1383 1440 0.617413 AGGCATCTGTGTCTGGGAAG 59.383 55.000 0.00 0.00 39.27 3.46
1464 1521 3.687698 GTGGTACATAAGCACGGAATGTT 59.312 43.478 0.00 0.00 45.87 2.71
1465 1522 4.871557 GTGGTACATAAGCACGGAATGTTA 59.128 41.667 0.00 0.00 45.87 2.41
1466 1523 5.526111 GTGGTACATAAGCACGGAATGTTAT 59.474 40.000 0.00 0.00 45.87 1.89
1469 1528 7.769507 TGGTACATAAGCACGGAATGTTATTTA 59.230 33.333 0.00 0.00 35.54 1.40
1630 1692 9.724839 AAAAAGATTGATTTGTGCAGATTTTTG 57.275 25.926 0.00 0.00 0.00 2.44
1665 1728 0.679960 ACGAATTGGGCCTACCTTGC 60.680 55.000 4.53 0.00 41.11 4.01
1672 1735 1.599797 GGCCTACCTTGCACAACGT 60.600 57.895 0.00 0.00 0.00 3.99
2222 2285 6.692681 CGTTGTAAAAATCCTCAATGGCATAG 59.307 38.462 0.00 0.00 35.26 2.23
2377 2440 2.412421 CTGAAAGAAACAGCCACAGC 57.588 50.000 0.00 0.00 34.07 4.40
2442 2505 7.615403 TGTAAGCATTGTTCTCTACTCTCAAT 58.385 34.615 0.00 0.00 0.00 2.57
2655 2718 3.080319 ACTTTTGCCTCTTCATCTCTGC 58.920 45.455 0.00 0.00 0.00 4.26
2786 2849 2.407090 ACGTACCTTTTACTGTTCGCC 58.593 47.619 0.00 0.00 0.00 5.54
2812 2875 6.589830 TTTTACGCTGATCAGATAGCTTTC 57.410 37.500 27.04 4.81 37.78 2.62
3290 3353 6.656902 TCAGCTCAAGAATCTGGTGATATTT 58.343 36.000 0.00 0.00 32.95 1.40
3414 3477 4.881273 TCGTGGAACCCAATGAAATCATAG 59.119 41.667 0.00 0.00 34.18 2.23
3424 3487 8.949421 ACCCAATGAAATCATAGTATTACCTCT 58.051 33.333 0.00 0.00 35.10 3.69
3702 3814 4.393239 AGAGTACTGTACACCCAGGTAA 57.607 45.455 19.27 0.00 36.75 2.85
3731 3843 0.473755 TGAGGTGTTGTGTGCAGGAT 59.526 50.000 0.00 0.00 0.00 3.24
3745 3857 6.127083 TGTGTGCAGGATATCTCAGTGAATTA 60.127 38.462 2.05 0.00 0.00 1.40
3802 3914 9.892130 AAAGATCGATGGATATTTTATACTCCC 57.108 33.333 0.54 0.00 40.24 4.30
3803 3915 8.846423 AGATCGATGGATATTTTATACTCCCT 57.154 34.615 0.54 0.00 31.51 4.20
3804 3916 8.919145 AGATCGATGGATATTTTATACTCCCTC 58.081 37.037 0.54 0.00 31.51 4.30
3805 3917 7.419711 TCGATGGATATTTTATACTCCCTCC 57.580 40.000 0.00 0.00 0.00 4.30
3806 3918 6.096423 TCGATGGATATTTTATACTCCCTCCG 59.904 42.308 0.00 0.00 0.00 4.63
3807 3919 6.127423 CGATGGATATTTTATACTCCCTCCGT 60.127 42.308 0.00 0.00 0.00 4.69
3808 3920 6.600882 TGGATATTTTATACTCCCTCCGTC 57.399 41.667 0.00 0.00 0.00 4.79
3809 3921 5.482878 TGGATATTTTATACTCCCTCCGTCC 59.517 44.000 0.00 0.00 0.00 4.79
3810 3922 5.105023 GGATATTTTATACTCCCTCCGTCCC 60.105 48.000 0.00 0.00 0.00 4.46
3811 3923 2.852714 TTTATACTCCCTCCGTCCCA 57.147 50.000 0.00 0.00 0.00 4.37
3812 3924 2.852714 TTATACTCCCTCCGTCCCAA 57.147 50.000 0.00 0.00 0.00 4.12
3813 3925 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
3814 3926 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
3815 3927 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
3816 3928 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3817 3929 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
3818 3930 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
3819 3931 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
3820 3932 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
3821 3933 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
3822 3934 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
3823 3935 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
3824 3936 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
3825 3937 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
3826 3938 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
3827 3939 4.154195 CCGTCCCAAAATAAGTGTCTCAAG 59.846 45.833 0.00 0.00 0.00 3.02
3828 3940 4.378459 CGTCCCAAAATAAGTGTCTCAAGC 60.378 45.833 0.00 0.00 0.00 4.01
3829 3941 4.762251 GTCCCAAAATAAGTGTCTCAAGCT 59.238 41.667 0.00 0.00 0.00 3.74
3830 3942 5.241728 GTCCCAAAATAAGTGTCTCAAGCTT 59.758 40.000 0.00 0.00 0.00 3.74
3831 3943 6.430000 GTCCCAAAATAAGTGTCTCAAGCTTA 59.570 38.462 0.00 0.00 0.00 3.09
3832 3944 6.655003 TCCCAAAATAAGTGTCTCAAGCTTAG 59.345 38.462 0.00 0.00 0.00 2.18
3833 3945 6.431234 CCCAAAATAAGTGTCTCAAGCTTAGT 59.569 38.462 0.00 0.00 0.00 2.24
3834 3946 7.606456 CCCAAAATAAGTGTCTCAAGCTTAGTA 59.394 37.037 0.00 0.00 0.00 1.82
3835 3947 8.443937 CCAAAATAAGTGTCTCAAGCTTAGTAC 58.556 37.037 0.00 0.00 0.00 2.73
3836 3948 8.988934 CAAAATAAGTGTCTCAAGCTTAGTACA 58.011 33.333 0.00 0.36 0.00 2.90
3837 3949 9.555727 AAAATAAGTGTCTCAAGCTTAGTACAA 57.444 29.630 0.00 0.00 0.00 2.41
3838 3950 8.535690 AATAAGTGTCTCAAGCTTAGTACAAC 57.464 34.615 0.00 0.00 0.00 3.32
3839 3951 5.793030 AGTGTCTCAAGCTTAGTACAACT 57.207 39.130 0.00 0.00 0.00 3.16
3840 3952 6.163135 AGTGTCTCAAGCTTAGTACAACTT 57.837 37.500 0.00 0.00 0.00 2.66
3841 3953 6.583562 AGTGTCTCAAGCTTAGTACAACTTT 58.416 36.000 0.00 0.00 0.00 2.66
3842 3954 6.480320 AGTGTCTCAAGCTTAGTACAACTTTG 59.520 38.462 0.00 0.00 0.00 2.77
3843 3955 6.258068 GTGTCTCAAGCTTAGTACAACTTTGT 59.742 38.462 0.00 0.00 44.86 2.83
3844 3956 7.437267 GTGTCTCAAGCTTAGTACAACTTTGTA 59.563 37.037 0.00 0.00 42.35 2.41
3868 3980 7.451501 ACTAGAGTTAGTACAAAGGTGAGAC 57.548 40.000 0.00 0.00 38.35 3.36
3869 3981 7.002879 ACTAGAGTTAGTACAAAGGTGAGACA 58.997 38.462 0.00 0.00 38.35 3.41
3870 3982 6.086785 AGAGTTAGTACAAAGGTGAGACAC 57.913 41.667 0.00 0.00 0.00 3.67
3871 3983 5.834204 AGAGTTAGTACAAAGGTGAGACACT 59.166 40.000 0.00 0.00 34.40 3.55
3872 3984 6.324254 AGAGTTAGTACAAAGGTGAGACACTT 59.676 38.462 0.00 0.00 34.40 3.16
3873 3985 7.504911 AGAGTTAGTACAAAGGTGAGACACTTA 59.495 37.037 0.00 0.00 34.40 2.24
3874 3986 8.191534 AGTTAGTACAAAGGTGAGACACTTAT 57.808 34.615 0.00 0.00 34.40 1.73
3875 3987 8.648693 AGTTAGTACAAAGGTGAGACACTTATT 58.351 33.333 0.00 0.00 34.40 1.40
3876 3988 9.269453 GTTAGTACAAAGGTGAGACACTTATTT 57.731 33.333 0.00 0.00 34.40 1.40
3877 3989 9.841295 TTAGTACAAAGGTGAGACACTTATTTT 57.159 29.630 0.00 0.00 34.40 1.82
3878 3990 8.154649 AGTACAAAGGTGAGACACTTATTTTG 57.845 34.615 0.00 0.51 34.40 2.44
3879 3991 6.391227 ACAAAGGTGAGACACTTATTTTGG 57.609 37.500 3.84 0.00 34.40 3.28
3880 3992 5.301805 ACAAAGGTGAGACACTTATTTTGGG 59.698 40.000 3.84 0.00 34.40 4.12
3881 3993 4.993705 AGGTGAGACACTTATTTTGGGA 57.006 40.909 0.00 0.00 34.40 4.37
3882 3994 5.520748 AGGTGAGACACTTATTTTGGGAT 57.479 39.130 0.00 0.00 34.40 3.85
3883 3995 5.256474 AGGTGAGACACTTATTTTGGGATG 58.744 41.667 0.00 0.00 34.40 3.51
3884 3996 4.399303 GGTGAGACACTTATTTTGGGATGG 59.601 45.833 0.00 0.00 34.40 3.51
3885 3997 5.253330 GTGAGACACTTATTTTGGGATGGA 58.747 41.667 0.00 0.00 0.00 3.41
3886 3998 5.355350 GTGAGACACTTATTTTGGGATGGAG 59.645 44.000 0.00 0.00 0.00 3.86
3887 3999 4.860022 AGACACTTATTTTGGGATGGAGG 58.140 43.478 0.00 0.00 0.00 4.30
3888 4000 3.954258 GACACTTATTTTGGGATGGAGGG 59.046 47.826 0.00 0.00 0.00 4.30
3889 4001 3.596046 ACACTTATTTTGGGATGGAGGGA 59.404 43.478 0.00 0.00 0.00 4.20
3890 4002 4.210331 CACTTATTTTGGGATGGAGGGAG 58.790 47.826 0.00 0.00 0.00 4.30
3891 4003 3.858638 ACTTATTTTGGGATGGAGGGAGT 59.141 43.478 0.00 0.00 0.00 3.85
3899 4011 4.119155 TGGGATGGAGGGAGTAGAAAAAT 58.881 43.478 0.00 0.00 0.00 1.82
3971 4083 6.042552 CACTTCCAGAGACCAATATCCAGTAT 59.957 42.308 0.00 0.00 0.00 2.12
3972 4084 6.617371 ACTTCCAGAGACCAATATCCAGTATT 59.383 38.462 0.00 0.00 33.23 1.89
3973 4085 7.127955 ACTTCCAGAGACCAATATCCAGTATTT 59.872 37.037 0.00 0.00 30.53 1.40
3974 4086 6.830912 TCCAGAGACCAATATCCAGTATTTG 58.169 40.000 0.00 0.00 30.53 2.32
3975 4087 5.471456 CCAGAGACCAATATCCAGTATTTGC 59.529 44.000 0.00 0.00 30.53 3.68
3976 4088 5.471456 CAGAGACCAATATCCAGTATTTGCC 59.529 44.000 0.00 0.00 30.53 4.52
3977 4089 5.370880 AGAGACCAATATCCAGTATTTGCCT 59.629 40.000 0.00 0.00 30.53 4.75
3978 4090 5.625150 AGACCAATATCCAGTATTTGCCTC 58.375 41.667 0.00 0.00 30.53 4.70
3979 4091 5.370880 AGACCAATATCCAGTATTTGCCTCT 59.629 40.000 0.00 0.00 30.53 3.69
3980 4092 5.380043 ACCAATATCCAGTATTTGCCTCTG 58.620 41.667 0.00 0.00 30.53 3.35
3981 4093 4.217118 CCAATATCCAGTATTTGCCTCTGC 59.783 45.833 0.00 0.00 30.53 4.26
3982 4094 2.355010 ATCCAGTATTTGCCTCTGCC 57.645 50.000 0.00 0.00 36.33 4.85
3983 4095 0.991146 TCCAGTATTTGCCTCTGCCA 59.009 50.000 0.00 0.00 36.33 4.92
3984 4096 1.565759 TCCAGTATTTGCCTCTGCCAT 59.434 47.619 0.00 0.00 36.33 4.40
3985 4097 2.025037 TCCAGTATTTGCCTCTGCCATT 60.025 45.455 0.00 0.00 36.33 3.16
3986 4098 2.360165 CCAGTATTTGCCTCTGCCATTC 59.640 50.000 0.00 0.00 36.33 2.67
3987 4099 2.360165 CAGTATTTGCCTCTGCCATTCC 59.640 50.000 0.00 0.00 36.33 3.01
3988 4100 2.025037 AGTATTTGCCTCTGCCATTCCA 60.025 45.455 0.00 0.00 36.33 3.53
3989 4101 2.170012 ATTTGCCTCTGCCATTCCAT 57.830 45.000 0.00 0.00 36.33 3.41
3990 4102 1.187974 TTTGCCTCTGCCATTCCATG 58.812 50.000 0.00 0.00 36.33 3.66
3991 4103 0.332293 TTGCCTCTGCCATTCCATGA 59.668 50.000 0.00 0.00 36.33 3.07
3992 4104 0.106868 TGCCTCTGCCATTCCATGAG 60.107 55.000 0.00 0.00 36.33 2.90
3993 4105 0.106819 GCCTCTGCCATTCCATGAGT 60.107 55.000 0.00 0.00 0.00 3.41
3994 4106 1.964552 CCTCTGCCATTCCATGAGTC 58.035 55.000 0.00 0.00 0.00 3.36
3995 4107 1.579698 CTCTGCCATTCCATGAGTCG 58.420 55.000 0.00 0.00 0.00 4.18
3996 4108 0.462581 TCTGCCATTCCATGAGTCGC 60.463 55.000 0.00 0.00 0.00 5.19
3997 4109 0.463295 CTGCCATTCCATGAGTCGCT 60.463 55.000 0.00 0.00 0.00 4.93
3998 4110 0.035152 TGCCATTCCATGAGTCGCTT 60.035 50.000 0.00 0.00 0.00 4.68
3999 4111 0.659957 GCCATTCCATGAGTCGCTTC 59.340 55.000 0.00 0.00 0.00 3.86
4000 4112 1.303309 CCATTCCATGAGTCGCTTCC 58.697 55.000 0.00 0.00 0.00 3.46
4001 4113 1.134280 CCATTCCATGAGTCGCTTCCT 60.134 52.381 0.00 0.00 0.00 3.36
4002 4114 2.636830 CATTCCATGAGTCGCTTCCTT 58.363 47.619 0.00 0.00 0.00 3.36
4003 4115 2.859165 TTCCATGAGTCGCTTCCTTT 57.141 45.000 0.00 0.00 0.00 3.11
4004 4116 2.859165 TCCATGAGTCGCTTCCTTTT 57.141 45.000 0.00 0.00 0.00 2.27
4005 4117 3.140325 TCCATGAGTCGCTTCCTTTTT 57.860 42.857 0.00 0.00 0.00 1.94
4006 4118 2.813754 TCCATGAGTCGCTTCCTTTTTG 59.186 45.455 0.00 0.00 0.00 2.44
4007 4119 2.589014 CATGAGTCGCTTCCTTTTTGC 58.411 47.619 0.00 0.00 0.00 3.68
4013 4125 1.895051 CGCTTCCTTTTTGCGTATGG 58.105 50.000 0.00 0.00 44.00 2.74
4014 4126 1.629013 GCTTCCTTTTTGCGTATGGC 58.371 50.000 0.00 0.00 43.96 4.40
4028 4140 4.938756 TGGCACCCCCACTCCCTT 62.939 66.667 0.00 0.00 39.18 3.95
4029 4141 3.590574 GGCACCCCCACTCCCTTT 61.591 66.667 0.00 0.00 0.00 3.11
4030 4142 2.283173 GCACCCCCACTCCCTTTG 60.283 66.667 0.00 0.00 0.00 2.77
4031 4143 2.440599 CACCCCCACTCCCTTTGG 59.559 66.667 0.00 0.00 0.00 3.28
4032 4144 3.590574 ACCCCCACTCCCTTTGGC 61.591 66.667 0.00 0.00 32.13 4.52
4033 4145 3.589542 CCCCCACTCCCTTTGGCA 61.590 66.667 0.00 0.00 32.13 4.92
4034 4146 2.036256 CCCCACTCCCTTTGGCAG 59.964 66.667 0.00 0.00 32.13 4.85
4035 4147 2.677875 CCCACTCCCTTTGGCAGC 60.678 66.667 0.00 0.00 32.13 5.25
4036 4148 2.115910 CCACTCCCTTTGGCAGCA 59.884 61.111 0.00 0.00 0.00 4.41
4037 4149 1.304713 CCACTCCCTTTGGCAGCAT 60.305 57.895 0.00 0.00 0.00 3.79
4038 4150 1.318158 CCACTCCCTTTGGCAGCATC 61.318 60.000 0.00 0.00 0.00 3.91
4039 4151 0.323178 CACTCCCTTTGGCAGCATCT 60.323 55.000 0.00 0.00 0.00 2.90
4040 4152 1.065199 CACTCCCTTTGGCAGCATCTA 60.065 52.381 0.00 0.00 0.00 1.98
4041 4153 1.065126 ACTCCCTTTGGCAGCATCTAC 60.065 52.381 0.00 0.00 0.00 2.59
4042 4154 1.211457 CTCCCTTTGGCAGCATCTACT 59.789 52.381 0.00 0.00 0.00 2.57
4043 4155 2.435805 CTCCCTTTGGCAGCATCTACTA 59.564 50.000 0.00 0.00 0.00 1.82
4044 4156 2.843730 TCCCTTTGGCAGCATCTACTAA 59.156 45.455 0.00 0.00 0.00 2.24
4045 4157 3.459598 TCCCTTTGGCAGCATCTACTAAT 59.540 43.478 0.00 0.00 0.00 1.73
4046 4158 4.079787 TCCCTTTGGCAGCATCTACTAATT 60.080 41.667 0.00 0.00 0.00 1.40
4047 4159 4.276926 CCCTTTGGCAGCATCTACTAATTC 59.723 45.833 0.00 0.00 0.00 2.17
4048 4160 4.024556 CCTTTGGCAGCATCTACTAATTCG 60.025 45.833 0.00 0.00 0.00 3.34
4049 4161 3.111853 TGGCAGCATCTACTAATTCGG 57.888 47.619 0.00 0.00 0.00 4.30
4050 4162 2.698274 TGGCAGCATCTACTAATTCGGA 59.302 45.455 0.00 0.00 0.00 4.55
4051 4163 3.133901 TGGCAGCATCTACTAATTCGGAA 59.866 43.478 0.00 0.00 0.00 4.30
4052 4164 3.495001 GGCAGCATCTACTAATTCGGAAC 59.505 47.826 0.00 0.00 0.00 3.62
4053 4165 4.372656 GCAGCATCTACTAATTCGGAACT 58.627 43.478 0.00 0.00 0.00 3.01
4054 4166 4.811557 GCAGCATCTACTAATTCGGAACTT 59.188 41.667 0.00 0.00 0.00 2.66
4055 4167 5.983720 GCAGCATCTACTAATTCGGAACTTA 59.016 40.000 0.00 0.00 0.00 2.24
4056 4168 6.479001 GCAGCATCTACTAATTCGGAACTTAA 59.521 38.462 0.00 0.00 0.00 1.85
4057 4169 7.171678 GCAGCATCTACTAATTCGGAACTTAAT 59.828 37.037 0.00 0.00 0.00 1.40
4058 4170 9.046296 CAGCATCTACTAATTCGGAACTTAATT 57.954 33.333 0.00 0.00 0.00 1.40
4059 4171 9.614792 AGCATCTACTAATTCGGAACTTAATTT 57.385 29.630 0.00 0.00 0.00 1.82
4060 4172 9.651718 GCATCTACTAATTCGGAACTTAATTTG 57.348 33.333 0.00 0.00 0.00 2.32
4065 4177 8.965986 ACTAATTCGGAACTTAATTTGAAAGC 57.034 30.769 0.00 0.00 0.00 3.51
4066 4178 8.027189 ACTAATTCGGAACTTAATTTGAAAGCC 58.973 33.333 0.00 0.00 0.00 4.35
4067 4179 5.776173 TTCGGAACTTAATTTGAAAGCCA 57.224 34.783 0.00 0.00 0.00 4.75
4068 4180 5.975693 TCGGAACTTAATTTGAAAGCCAT 57.024 34.783 0.00 0.00 0.00 4.40
4069 4181 7.455641 TTCGGAACTTAATTTGAAAGCCATA 57.544 32.000 0.00 0.00 0.00 2.74
4070 4182 7.639113 TCGGAACTTAATTTGAAAGCCATAT 57.361 32.000 0.00 0.00 0.00 1.78
4071 4183 8.062065 TCGGAACTTAATTTGAAAGCCATATT 57.938 30.769 0.00 0.00 32.48 1.28
4072 4184 8.527810 TCGGAACTTAATTTGAAAGCCATATTT 58.472 29.630 0.00 0.00 30.75 1.40
4073 4185 8.807581 CGGAACTTAATTTGAAAGCCATATTTC 58.192 33.333 0.00 0.00 39.22 2.17
4074 4186 8.807581 GGAACTTAATTTGAAAGCCATATTTCG 58.192 33.333 0.00 0.00 41.21 3.46
4075 4187 9.567848 GAACTTAATTTGAAAGCCATATTTCGA 57.432 29.630 0.00 0.00 41.21 3.71
4076 4188 8.911247 ACTTAATTTGAAAGCCATATTTCGAC 57.089 30.769 0.00 0.00 41.21 4.20
4077 4189 7.973944 ACTTAATTTGAAAGCCATATTTCGACC 59.026 33.333 0.00 0.00 41.21 4.79
4078 4190 4.712122 TTTGAAAGCCATATTTCGACCC 57.288 40.909 0.00 0.00 41.21 4.46
4079 4191 2.285083 TGAAAGCCATATTTCGACCCG 58.715 47.619 0.00 0.00 41.21 5.28
4080 4192 1.602377 GAAAGCCATATTTCGACCCGG 59.398 52.381 0.00 0.00 30.10 5.73
4081 4193 0.834612 AAGCCATATTTCGACCCGGA 59.165 50.000 0.73 0.00 0.00 5.14
4082 4194 0.106149 AGCCATATTTCGACCCGGAC 59.894 55.000 0.73 0.00 0.00 4.79
4083 4195 1.219522 GCCATATTTCGACCCGGACG 61.220 60.000 0.73 9.08 0.00 4.79
4084 4196 1.219522 CCATATTTCGACCCGGACGC 61.220 60.000 0.73 0.00 0.00 5.19
4085 4197 0.249322 CATATTTCGACCCGGACGCT 60.249 55.000 0.73 0.00 0.00 5.07
4086 4198 0.462789 ATATTTCGACCCGGACGCTT 59.537 50.000 0.73 0.00 0.00 4.68
4087 4199 0.247185 TATTTCGACCCGGACGCTTT 59.753 50.000 0.73 0.00 0.00 3.51
4088 4200 0.604511 ATTTCGACCCGGACGCTTTT 60.605 50.000 0.73 0.00 0.00 2.27
4089 4201 1.500512 TTTCGACCCGGACGCTTTTG 61.501 55.000 0.73 0.00 0.00 2.44
4090 4202 3.419759 CGACCCGGACGCTTTTGG 61.420 66.667 0.73 0.00 0.00 3.28
4092 4204 3.540367 GACCCGGACGCTTTTGGGA 62.540 63.158 0.73 0.00 44.88 4.37
4093 4205 2.045340 CCCGGACGCTTTTGGGAT 60.045 61.111 0.73 0.00 44.88 3.85
4094 4206 2.406616 CCCGGACGCTTTTGGGATG 61.407 63.158 0.73 0.00 44.88 3.51
4095 4207 2.485122 CGGACGCTTTTGGGATGC 59.515 61.111 0.00 0.00 36.14 3.91
4096 4208 2.040544 CGGACGCTTTTGGGATGCT 61.041 57.895 0.00 0.00 36.14 3.79
4097 4209 1.586154 CGGACGCTTTTGGGATGCTT 61.586 55.000 0.00 0.00 36.14 3.91
4098 4210 0.171231 GGACGCTTTTGGGATGCTTC 59.829 55.000 0.00 0.00 36.14 3.86
4099 4211 1.168714 GACGCTTTTGGGATGCTTCT 58.831 50.000 0.00 0.00 36.14 2.85
4100 4212 2.356135 GACGCTTTTGGGATGCTTCTA 58.644 47.619 0.00 0.00 36.14 2.10
4101 4213 2.747446 GACGCTTTTGGGATGCTTCTAA 59.253 45.455 0.00 0.00 36.14 2.10
4102 4214 3.356290 ACGCTTTTGGGATGCTTCTAAT 58.644 40.909 0.00 0.00 36.14 1.73
4103 4215 4.523083 ACGCTTTTGGGATGCTTCTAATA 58.477 39.130 0.00 0.00 36.14 0.98
4104 4216 4.947388 ACGCTTTTGGGATGCTTCTAATAA 59.053 37.500 0.00 0.00 36.14 1.40
4105 4217 5.163652 ACGCTTTTGGGATGCTTCTAATAAC 60.164 40.000 0.00 0.00 36.14 1.89
4106 4218 5.592054 GCTTTTGGGATGCTTCTAATAACC 58.408 41.667 0.00 0.00 0.00 2.85
4107 4219 5.127031 GCTTTTGGGATGCTTCTAATAACCA 59.873 40.000 0.00 0.00 0.00 3.67
4108 4220 6.350949 GCTTTTGGGATGCTTCTAATAACCAA 60.351 38.462 0.00 0.00 35.17 3.67
4109 4221 6.524101 TTTGGGATGCTTCTAATAACCAAC 57.476 37.500 0.00 0.00 36.57 3.77
4110 4222 4.196193 TGGGATGCTTCTAATAACCAACG 58.804 43.478 0.00 0.00 0.00 4.10
4111 4223 4.080807 TGGGATGCTTCTAATAACCAACGA 60.081 41.667 0.00 0.00 0.00 3.85
4112 4224 4.879545 GGGATGCTTCTAATAACCAACGAA 59.120 41.667 0.00 0.00 0.00 3.85
4113 4225 5.531287 GGGATGCTTCTAATAACCAACGAAT 59.469 40.000 0.00 0.00 0.00 3.34
4161 4273 5.554324 GCAGCACATTTAAGTTTTGTTCGTG 60.554 40.000 0.00 0.00 0.00 4.35
4162 4274 4.502645 AGCACATTTAAGTTTTGTTCGTGC 59.497 37.500 0.00 0.00 45.69 5.34
4172 4284 0.985549 TTGTTCGTGCGTTTGTTTGC 59.014 45.000 0.00 0.00 0.00 3.68
4294 4406 3.795688 AAGAACTTCCTCAATGCCTCA 57.204 42.857 0.00 0.00 0.00 3.86
4332 4455 0.181587 TAGAGAGAGAGAGCACCCCG 59.818 60.000 0.00 0.00 0.00 5.73
4335 4458 2.752238 AGAGAGAGCACCCCGTCG 60.752 66.667 0.00 0.00 0.00 5.12
4463 4586 4.379174 CCACCTGGTACTGCACAC 57.621 61.111 0.00 0.00 0.00 3.82
4464 4587 1.449782 CCACCTGGTACTGCACACA 59.550 57.895 0.00 0.00 0.00 3.72
4465 4588 0.884704 CCACCTGGTACTGCACACAC 60.885 60.000 0.00 0.00 0.00 3.82
4466 4589 1.069090 ACCTGGTACTGCACACACG 59.931 57.895 0.00 0.00 0.00 4.49
4552 4679 2.227388 CTGATGTCTGTTTGGTTGCTCC 59.773 50.000 0.00 0.00 0.00 4.70
4553 4680 1.197721 GATGTCTGTTTGGTTGCTCCG 59.802 52.381 0.00 0.00 39.52 4.63
4801 4935 4.099573 GCAAGGACAGAGGCTTACATACTA 59.900 45.833 0.00 0.00 0.00 1.82
4968 5102 8.049117 AGACAGAAAGCCATTATGATCTGTTTA 58.951 33.333 17.13 0.00 45.33 2.01
5047 5181 6.261158 GGAAGGACTTGAAACCTGATATTAGC 59.739 42.308 0.00 0.00 36.56 3.09
5141 5275 4.065789 TGTATGCGGTGTTGACATTGTTA 58.934 39.130 0.00 0.00 0.00 2.41
5154 5288 7.543868 TGTTGACATTGTTAAACACCTCAAAAG 59.456 33.333 12.42 0.00 0.00 2.27
5175 5309 5.446143 AGATCGTGGCAAAATAACAAACA 57.554 34.783 0.00 0.00 0.00 2.83
5176 5310 5.219633 AGATCGTGGCAAAATAACAAACAC 58.780 37.500 0.00 0.00 0.00 3.32
5186 5320 7.282916 GCAAAATAACAAACACAATACTGCAG 58.717 34.615 13.48 13.48 0.00 4.41
5212 5346 6.691508 TGTACATGTATGTATCCAGATGCTC 58.308 40.000 9.18 0.00 44.25 4.26
5239 5373 6.906157 AAGATTTGGTTCTGTGTCATGATT 57.094 33.333 0.00 0.00 0.00 2.57
5240 5374 6.906157 AGATTTGGTTCTGTGTCATGATTT 57.094 33.333 0.00 0.00 0.00 2.17
5241 5375 7.294017 AGATTTGGTTCTGTGTCATGATTTT 57.706 32.000 0.00 0.00 0.00 1.82
5242 5376 7.373493 AGATTTGGTTCTGTGTCATGATTTTC 58.627 34.615 0.00 0.00 0.00 2.29
5243 5377 6.713762 TTTGGTTCTGTGTCATGATTTTCT 57.286 33.333 0.00 0.00 0.00 2.52
5244 5378 6.713762 TTGGTTCTGTGTCATGATTTTCTT 57.286 33.333 0.00 0.00 0.00 2.52
5245 5379 6.713762 TGGTTCTGTGTCATGATTTTCTTT 57.286 33.333 0.00 0.00 0.00 2.52
5246 5380 6.506147 TGGTTCTGTGTCATGATTTTCTTTG 58.494 36.000 0.00 0.00 0.00 2.77
5247 5381 6.096705 TGGTTCTGTGTCATGATTTTCTTTGT 59.903 34.615 0.00 0.00 0.00 2.83
5248 5382 6.638468 GGTTCTGTGTCATGATTTTCTTTGTC 59.362 38.462 0.00 0.00 0.00 3.18
5249 5383 6.940831 TCTGTGTCATGATTTTCTTTGTCA 57.059 33.333 0.00 0.00 0.00 3.58
5250 5384 7.514784 TCTGTGTCATGATTTTCTTTGTCAT 57.485 32.000 0.00 0.00 33.08 3.06
5251 5385 7.364970 TCTGTGTCATGATTTTCTTTGTCATG 58.635 34.615 0.00 7.97 46.57 3.07
5282 5416 3.816523 GTGTTTTATTGGTCCTTGTCGGA 59.183 43.478 0.00 0.00 40.30 4.55
5303 5437 2.233271 CCATTGTCATCTACATGGGGC 58.767 52.381 0.00 0.00 38.10 5.80
5311 5445 1.153369 CTACATGGGGCGGACACTG 60.153 63.158 0.00 0.00 0.00 3.66
5312 5446 1.610967 TACATGGGGCGGACACTGA 60.611 57.895 0.00 0.00 0.00 3.41
5313 5447 1.613317 TACATGGGGCGGACACTGAG 61.613 60.000 0.00 0.00 0.00 3.35
5332 5466 4.758251 CGCTGGTCCGGTGATGCA 62.758 66.667 5.19 0.00 0.00 3.96
5333 5467 2.359850 GCTGGTCCGGTGATGCAA 60.360 61.111 0.00 0.00 0.00 4.08
5336 5470 0.606401 CTGGTCCGGTGATGCAACTT 60.606 55.000 0.00 0.00 0.00 2.66
5343 5477 0.827507 GGTGATGCAACTTGGTGGGT 60.828 55.000 0.00 0.00 0.00 4.51
5382 5516 3.184683 CGAGAGCGCCAGTTCTGC 61.185 66.667 2.29 0.00 38.08 4.26
5383 5517 2.264166 GAGAGCGCCAGTTCTGCT 59.736 61.111 2.29 0.00 38.08 4.24
5384 5518 1.375268 GAGAGCGCCAGTTCTGCTT 60.375 57.895 2.29 0.00 38.08 3.91
5385 5519 0.952984 GAGAGCGCCAGTTCTGCTTT 60.953 55.000 2.29 0.00 38.08 3.51
5386 5520 0.536006 AGAGCGCCAGTTCTGCTTTT 60.536 50.000 2.29 0.00 39.49 2.27
5387 5521 0.386478 GAGCGCCAGTTCTGCTTTTG 60.386 55.000 2.29 0.00 39.49 2.44
5388 5522 1.372128 GCGCCAGTTCTGCTTTTGG 60.372 57.895 0.00 0.00 0.00 3.28
5389 5523 1.286880 CGCCAGTTCTGCTTTTGGG 59.713 57.895 0.00 0.00 0.00 4.12
5390 5524 1.005748 GCCAGTTCTGCTTTTGGGC 60.006 57.895 0.00 0.00 0.00 5.36
5391 5525 1.747325 GCCAGTTCTGCTTTTGGGCA 61.747 55.000 0.00 0.00 39.66 5.36
5399 5533 1.821216 TGCTTTTGGGCAGTAGTAGC 58.179 50.000 0.00 0.00 37.29 3.58
5400 5534 1.073125 TGCTTTTGGGCAGTAGTAGCA 59.927 47.619 0.00 0.00 37.29 3.49
5401 5535 2.159382 GCTTTTGGGCAGTAGTAGCAA 58.841 47.619 0.00 0.00 0.00 3.91
5402 5536 2.556622 GCTTTTGGGCAGTAGTAGCAAA 59.443 45.455 0.00 0.00 0.00 3.68
5403 5537 3.193479 GCTTTTGGGCAGTAGTAGCAAAT 59.807 43.478 0.00 0.00 0.00 2.32
5404 5538 4.737054 CTTTTGGGCAGTAGTAGCAAATG 58.263 43.478 0.00 0.00 0.00 2.32
5405 5539 1.750193 TGGGCAGTAGTAGCAAATGC 58.250 50.000 0.00 0.00 42.49 3.56
5410 5544 3.531538 GCAGTAGTAGCAAATGCCTACA 58.468 45.455 17.99 4.87 43.38 2.74
5411 5545 4.130118 GCAGTAGTAGCAAATGCCTACAT 58.870 43.478 17.99 6.40 43.38 2.29
5412 5546 4.212214 GCAGTAGTAGCAAATGCCTACATC 59.788 45.833 17.99 9.37 43.38 3.06
5413 5547 5.359756 CAGTAGTAGCAAATGCCTACATCA 58.640 41.667 17.99 3.85 43.38 3.07
5414 5548 5.994054 CAGTAGTAGCAAATGCCTACATCAT 59.006 40.000 17.99 2.10 43.38 2.45
5415 5549 7.154656 CAGTAGTAGCAAATGCCTACATCATA 58.845 38.462 17.99 3.08 43.38 2.15
5416 5550 7.116948 CAGTAGTAGCAAATGCCTACATCATAC 59.883 40.741 17.99 11.06 43.38 2.39
5417 5551 5.928976 AGTAGCAAATGCCTACATCATACA 58.071 37.500 0.94 0.00 43.38 2.29
5418 5552 6.537355 AGTAGCAAATGCCTACATCATACAT 58.463 36.000 0.94 0.00 43.38 2.29
5419 5553 7.000472 AGTAGCAAATGCCTACATCATACATT 59.000 34.615 0.94 0.00 43.38 2.71
5420 5554 6.720112 AGCAAATGCCTACATCATACATTT 57.280 33.333 0.94 0.00 43.38 2.32
5422 5556 6.758593 CAAATGCCTACATCATACATTTGC 57.241 37.500 12.22 0.00 45.92 3.68
5423 5557 5.458041 AATGCCTACATCATACATTTGCC 57.542 39.130 0.00 0.00 34.62 4.52
5424 5558 3.895998 TGCCTACATCATACATTTGCCA 58.104 40.909 0.00 0.00 0.00 4.92
5425 5559 4.472496 TGCCTACATCATACATTTGCCAT 58.528 39.130 0.00 0.00 0.00 4.40
5426 5560 4.278919 TGCCTACATCATACATTTGCCATG 59.721 41.667 0.00 0.00 0.00 3.66
5427 5561 4.321452 GCCTACATCATACATTTGCCATGG 60.321 45.833 7.63 7.63 0.00 3.66
5428 5562 4.219070 CCTACATCATACATTTGCCATGGG 59.781 45.833 15.13 0.00 0.00 4.00
5470 5604 4.563630 CGCAAGGTACGCACTGTA 57.436 55.556 0.00 0.00 0.00 2.74
5471 5605 3.044809 CGCAAGGTACGCACTGTAT 57.955 52.632 0.00 0.00 35.02 2.29
5472 5606 2.197792 CGCAAGGTACGCACTGTATA 57.802 50.000 0.00 0.00 35.02 1.47
5473 5607 2.117137 CGCAAGGTACGCACTGTATAG 58.883 52.381 0.00 0.00 35.02 1.31
5474 5608 2.479049 CGCAAGGTACGCACTGTATAGT 60.479 50.000 0.00 0.00 37.75 2.12
5475 5609 3.242837 CGCAAGGTACGCACTGTATAGTA 60.243 47.826 0.00 0.00 34.74 1.82
5476 5610 4.040376 GCAAGGTACGCACTGTATAGTAC 58.960 47.826 0.00 9.63 38.83 2.73
5477 5611 4.277258 CAAGGTACGCACTGTATAGTACG 58.723 47.826 10.36 10.36 46.58 3.67
5478 5612 3.797039 AGGTACGCACTGTATAGTACGA 58.203 45.455 17.86 0.70 44.55 3.43
5479 5613 3.806521 AGGTACGCACTGTATAGTACGAG 59.193 47.826 17.86 0.00 44.55 4.18
5480 5614 2.752144 ACGCACTGTATAGTACGAGC 57.248 50.000 17.86 4.63 44.55 5.03
5481 5615 1.004185 ACGCACTGTATAGTACGAGCG 60.004 52.381 17.86 17.27 44.55 5.03
5482 5616 1.396644 GCACTGTATAGTACGAGCGC 58.603 55.000 0.00 0.00 34.74 5.92
5483 5617 1.002684 GCACTGTATAGTACGAGCGCT 60.003 52.381 11.27 11.27 34.74 5.92
5484 5618 2.906153 CACTGTATAGTACGAGCGCTC 58.094 52.381 27.64 27.64 34.74 5.03
5494 5628 4.908877 GAGCGCTCGCCCGAGTAC 62.909 72.222 23.61 10.77 43.70 2.73
5496 5630 4.570663 GCGCTCGCCCGAGTACAT 62.571 66.667 17.75 0.00 43.70 2.29
5497 5631 2.655364 CGCTCGCCCGAGTACATG 60.655 66.667 17.75 0.00 43.70 3.21
5498 5632 2.279517 GCTCGCCCGAGTACATGG 60.280 66.667 17.75 0.00 43.70 3.66
5522 5656 3.320078 CGAACGGGCGCGACTATG 61.320 66.667 30.98 4.61 0.00 2.23
5523 5657 3.627218 GAACGGGCGCGACTATGC 61.627 66.667 30.98 1.26 0.00 3.14
5524 5658 4.143333 AACGGGCGCGACTATGCT 62.143 61.111 30.98 1.64 0.00 3.79
5525 5659 3.659089 AACGGGCGCGACTATGCTT 62.659 57.895 30.98 8.70 0.00 3.91
5526 5660 3.330853 CGGGCGCGACTATGCTTC 61.331 66.667 19.65 0.00 0.00 3.86
5527 5661 3.330853 GGGCGCGACTATGCTTCG 61.331 66.667 13.91 0.00 39.56 3.79
5532 5666 3.682315 CGACTATGCTTCGCCGCG 61.682 66.667 6.39 6.39 0.00 6.46
5533 5667 3.330853 GACTATGCTTCGCCGCGG 61.331 66.667 24.05 24.05 0.00 6.46
5548 5682 4.914420 CGGCAGTAGGAGCGCTCG 62.914 72.222 29.81 17.23 0.00 5.03
5551 5685 3.522731 CAGTAGGAGCGCTCGCCT 61.523 66.667 29.81 24.81 44.95 5.52
5552 5686 3.522731 AGTAGGAGCGCTCGCCTG 61.523 66.667 29.81 0.00 42.72 4.85
5553 5687 3.518998 GTAGGAGCGCTCGCCTGA 61.519 66.667 29.81 10.92 42.72 3.86
5554 5688 2.754254 TAGGAGCGCTCGCCTGAA 60.754 61.111 29.81 7.41 42.72 3.02
5555 5689 2.775856 TAGGAGCGCTCGCCTGAAG 61.776 63.158 29.81 0.00 42.72 3.02
5595 5729 2.359850 CAGCACGCTGGGCCTTAA 60.360 61.111 11.29 0.00 40.17 1.85
5596 5730 2.045926 AGCACGCTGGGCCTTAAG 60.046 61.111 4.53 0.00 0.00 1.85
5597 5731 3.815396 GCACGCTGGGCCTTAAGC 61.815 66.667 4.53 9.18 42.60 3.09
5605 5739 4.303257 GGCCTTAAGCGCTCACTT 57.697 55.556 12.06 0.00 45.17 3.16
5606 5740 2.556286 GGCCTTAAGCGCTCACTTT 58.444 52.632 12.06 0.00 45.17 2.66
5607 5741 0.881796 GGCCTTAAGCGCTCACTTTT 59.118 50.000 12.06 0.00 45.17 2.27
5608 5742 1.269723 GGCCTTAAGCGCTCACTTTTT 59.730 47.619 12.06 0.00 45.17 1.94
5609 5743 2.585845 GCCTTAAGCGCTCACTTTTTC 58.414 47.619 12.06 0.00 0.00 2.29
5610 5744 2.226674 GCCTTAAGCGCTCACTTTTTCT 59.773 45.455 12.06 0.00 0.00 2.52
5611 5745 3.304726 GCCTTAAGCGCTCACTTTTTCTT 60.305 43.478 12.06 0.00 0.00 2.52
5612 5746 4.467735 CCTTAAGCGCTCACTTTTTCTTC 58.532 43.478 12.06 0.00 0.00 2.87
5613 5747 4.467735 CTTAAGCGCTCACTTTTTCTTCC 58.532 43.478 12.06 0.00 0.00 3.46
5614 5748 2.262423 AGCGCTCACTTTTTCTTCCT 57.738 45.000 2.64 0.00 0.00 3.36
5615 5749 2.576615 AGCGCTCACTTTTTCTTCCTT 58.423 42.857 2.64 0.00 0.00 3.36
5616 5750 2.952310 AGCGCTCACTTTTTCTTCCTTT 59.048 40.909 2.64 0.00 0.00 3.11
5617 5751 3.381590 AGCGCTCACTTTTTCTTCCTTTT 59.618 39.130 2.64 0.00 0.00 2.27
5618 5752 4.112634 GCGCTCACTTTTTCTTCCTTTTT 58.887 39.130 0.00 0.00 0.00 1.94
5641 5775 9.905171 TTTTTGCATTTTCTTTTTACTTTTGCT 57.095 22.222 0.00 0.00 0.00 3.91
5642 5776 9.905171 TTTTGCATTTTCTTTTTACTTTTGCTT 57.095 22.222 0.00 0.00 0.00 3.91
5643 5777 9.905171 TTTGCATTTTCTTTTTACTTTTGCTTT 57.095 22.222 0.00 0.00 0.00 3.51
5644 5778 9.553418 TTGCATTTTCTTTTTACTTTTGCTTTC 57.447 25.926 0.00 0.00 0.00 2.62
5645 5779 8.725148 TGCATTTTCTTTTTACTTTTGCTTTCA 58.275 25.926 0.00 0.00 0.00 2.69
5646 5780 9.720667 GCATTTTCTTTTTACTTTTGCTTTCAT 57.279 25.926 0.00 0.00 0.00 2.57
5754 5888 9.443283 TGCATTTTAAAAATGTTAAACATGCAC 57.557 25.926 21.03 7.33 37.97 4.57
5755 5889 9.443283 GCATTTTAAAAATGTTAAACATGCACA 57.557 25.926 19.23 0.00 37.97 4.57
5765 5899 9.762933 AATGTTAAACATGCACAGAAAATTACT 57.237 25.926 0.00 0.00 37.97 2.24
5766 5900 9.762933 ATGTTAAACATGCACAGAAAATTACTT 57.237 25.926 0.00 0.00 37.45 2.24
5767 5901 9.243637 TGTTAAACATGCACAGAAAATTACTTC 57.756 29.630 0.00 0.00 0.00 3.01
5768 5902 9.463443 GTTAAACATGCACAGAAAATTACTTCT 57.537 29.630 0.00 0.00 36.02 2.85
5772 5906 9.846248 AACATGCACAGAAAATTACTTCTAATC 57.154 29.630 0.00 0.00 33.81 1.75
5773 5907 9.236006 ACATGCACAGAAAATTACTTCTAATCT 57.764 29.630 0.00 0.00 33.81 2.40
5803 5937 9.639601 TGAAAAATGTACAACATGTGTAAAACA 57.360 25.926 0.00 0.57 44.38 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 9.705290 ACGTCAAATTTTATTTTCTGCCTAATT 57.295 25.926 0.00 0.00 0.00 1.40
66 67 8.486383 TGAATGCACGTCAAATTTTATTTTCTG 58.514 29.630 0.00 0.00 0.00 3.02
81 82 8.895932 AAGTAGAAATAAAATGAATGCACGTC 57.104 30.769 0.00 0.00 0.00 4.34
82 83 7.968405 GGAAGTAGAAATAAAATGAATGCACGT 59.032 33.333 0.00 0.00 0.00 4.49
105 111 0.099968 CTTATCAGCGACGGACGGAA 59.900 55.000 1.66 0.00 42.83 4.30
112 118 1.883084 GTGGCCCTTATCAGCGACG 60.883 63.158 0.00 0.00 0.00 5.12
113 119 0.179045 ATGTGGCCCTTATCAGCGAC 60.179 55.000 0.00 0.00 38.11 5.19
115 121 0.664761 CAATGTGGCCCTTATCAGCG 59.335 55.000 0.00 0.00 0.00 5.18
116 122 0.386838 GCAATGTGGCCCTTATCAGC 59.613 55.000 0.00 0.00 0.00 4.26
117 123 1.766494 TGCAATGTGGCCCTTATCAG 58.234 50.000 0.00 0.00 0.00 2.90
118 124 2.101783 CTTGCAATGTGGCCCTTATCA 58.898 47.619 0.00 0.00 0.00 2.15
119 125 1.410153 CCTTGCAATGTGGCCCTTATC 59.590 52.381 0.00 0.00 0.00 1.75
151 157 4.651008 GGTTCGCCACGTCGTCCA 62.651 66.667 0.00 0.00 37.19 4.02
168 174 2.399611 GCCAATCGGACGCGAAAG 59.600 61.111 15.93 2.64 0.00 2.62
373 387 1.951130 CCTCCGAATGTGGATCGCG 60.951 63.158 0.00 0.00 38.93 5.87
487 501 2.162608 GGATCTCCGTATGGTCTGATCG 59.837 54.545 18.60 0.00 37.87 3.69
569 600 1.726853 AAGAATTGGCCGAGACGAAG 58.273 50.000 0.00 0.00 0.00 3.79
570 601 2.178912 AAAGAATTGGCCGAGACGAA 57.821 45.000 0.00 0.00 0.00 3.85
571 602 1.804151 CAAAAGAATTGGCCGAGACGA 59.196 47.619 0.00 0.00 0.00 4.20
572 603 1.535462 ACAAAAGAATTGGCCGAGACG 59.465 47.619 0.00 0.00 0.00 4.18
573 604 2.922335 GCACAAAAGAATTGGCCGAGAC 60.922 50.000 0.00 0.00 0.00 3.36
574 605 1.269448 GCACAAAAGAATTGGCCGAGA 59.731 47.619 0.00 0.00 0.00 4.04
575 606 1.669795 GGCACAAAAGAATTGGCCGAG 60.670 52.381 0.00 0.00 0.00 4.63
576 607 0.316841 GGCACAAAAGAATTGGCCGA 59.683 50.000 0.00 0.00 0.00 5.54
577 608 2.826277 GGCACAAAAGAATTGGCCG 58.174 52.632 0.00 0.00 0.00 6.13
578 609 0.670239 CCGGCACAAAAGAATTGGCC 60.670 55.000 0.00 0.00 38.04 5.36
579 610 0.316841 TCCGGCACAAAAGAATTGGC 59.683 50.000 0.00 0.00 0.00 4.52
596 627 1.966451 CAGACAGGCCACCGTTTCC 60.966 63.158 5.01 0.00 0.00 3.13
695 726 4.505970 CTGGGAGGGGAGGGGAGG 62.506 77.778 0.00 0.00 0.00 4.30
1037 1083 1.732917 CAAAGCACCAGCACCGAAA 59.267 52.632 0.00 0.00 45.49 3.46
1042 1095 0.883833 ATACTGCAAAGCACCAGCAC 59.116 50.000 0.00 0.00 45.49 4.40
1060 1113 7.240194 AGCCAGTATACTCCTACCTAGTAAGAT 59.760 40.741 1.26 0.00 33.36 2.40
1079 1132 7.934665 TGAACAAATAGTTTTCAGTAGCCAGTA 59.065 33.333 0.00 0.00 41.51 2.74
1096 1149 5.255687 AGAGGCATCACACATGAACAAATA 58.744 37.500 0.00 0.00 38.69 1.40
1098 1151 3.489355 AGAGGCATCACACATGAACAAA 58.511 40.909 0.00 0.00 38.69 2.83
1166 1223 2.016961 CCCGCTGGATCATCAAACG 58.983 57.895 0.00 0.00 0.00 3.60
1170 1227 4.240103 CCGCCCGCTGGATCATCA 62.240 66.667 0.00 0.00 0.00 3.07
1227 1284 1.166531 AAACACCGCTGACCTTCTGC 61.167 55.000 0.00 0.00 37.88 4.26
1266 1323 1.772182 GGCTCGTCGACTCCATATTG 58.228 55.000 14.70 0.00 0.00 1.90
1383 1440 1.953138 CGACTGAGATGCCGCCATC 60.953 63.158 0.00 0.00 46.61 3.51
1602 1661 6.939551 ATCTGCACAAATCAATCTTTTTCG 57.060 33.333 0.00 0.00 0.00 3.46
1603 1662 9.940166 AAAAATCTGCACAAATCAATCTTTTTC 57.060 25.926 0.00 0.00 0.00 2.29
1615 1677 5.695816 GCATTAGGACAAAAATCTGCACAAA 59.304 36.000 0.00 0.00 0.00 2.83
1644 1706 2.167662 CAAGGTAGGCCCAATTCGTTT 58.832 47.619 0.00 0.00 34.66 3.60
1650 1712 0.114168 TTGTGCAAGGTAGGCCCAAT 59.886 50.000 0.00 0.00 34.66 3.16
2222 2285 4.694037 ACTTTACAAAATAGCGGTCCAGAC 59.306 41.667 0.00 0.00 0.00 3.51
2669 2732 6.603237 TTTGACAGTCCGCATAAATATCAG 57.397 37.500 0.00 0.00 0.00 2.90
2786 2849 4.504461 AGCTATCTGATCAGCGTAAAAACG 59.496 41.667 18.36 3.09 42.74 3.60
2812 2875 8.737168 TTCACAACTTGAATATTATCTCCTGG 57.263 34.615 0.00 0.00 39.45 4.45
3052 3115 7.165485 CGGGATTACCATAAGTTCCATATGAA 58.835 38.462 3.65 0.00 40.22 2.57
3290 3353 4.202141 ACTGTAAGATTGCAAAAGCAAGCA 60.202 37.500 18.80 7.35 38.39 3.91
3414 3477 5.254115 AGCTTTTTGGGACAGAGGTAATAC 58.746 41.667 0.00 0.00 42.39 1.89
3424 3487 4.787551 TCTAAGACAAGCTTTTTGGGACA 58.212 39.130 0.00 0.00 38.05 4.02
3702 3814 3.055094 ACACAACACCTCAAGAGAACTGT 60.055 43.478 0.00 0.00 0.00 3.55
3780 3892 7.201920 CGGAGGGAGTATAAAATATCCATCGAT 60.202 40.741 0.00 0.00 42.20 3.59
3783 3895 7.184067 ACGGAGGGAGTATAAAATATCCATC 57.816 40.000 0.00 0.00 40.91 3.51
3797 3909 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
3798 3910 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
3799 3911 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
3800 3912 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
3801 3913 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
3802 3914 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
3803 3915 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
3804 3916 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
3805 3917 4.378459 GCTTGAGACACTTATTTTGGGACG 60.378 45.833 0.00 0.00 0.00 4.79
3806 3918 4.762251 AGCTTGAGACACTTATTTTGGGAC 59.238 41.667 0.00 0.00 0.00 4.46
3807 3919 4.985538 AGCTTGAGACACTTATTTTGGGA 58.014 39.130 0.00 0.00 0.00 4.37
3808 3920 5.712152 AAGCTTGAGACACTTATTTTGGG 57.288 39.130 0.00 0.00 0.00 4.12
3809 3921 7.440523 ACTAAGCTTGAGACACTTATTTTGG 57.559 36.000 9.86 0.00 0.00 3.28
3810 3922 8.988934 TGTACTAAGCTTGAGACACTTATTTTG 58.011 33.333 9.86 0.00 0.00 2.44
3811 3923 9.555727 TTGTACTAAGCTTGAGACACTTATTTT 57.444 29.630 9.86 0.00 0.00 1.82
3812 3924 8.989980 GTTGTACTAAGCTTGAGACACTTATTT 58.010 33.333 9.86 0.00 0.00 1.40
3813 3925 8.368668 AGTTGTACTAAGCTTGAGACACTTATT 58.631 33.333 9.86 0.00 0.00 1.40
3814 3926 7.897864 AGTTGTACTAAGCTTGAGACACTTAT 58.102 34.615 9.86 0.00 0.00 1.73
3815 3927 7.286215 AGTTGTACTAAGCTTGAGACACTTA 57.714 36.000 9.86 0.00 0.00 2.24
3816 3928 6.163135 AGTTGTACTAAGCTTGAGACACTT 57.837 37.500 9.86 0.00 0.00 3.16
3817 3929 5.793030 AGTTGTACTAAGCTTGAGACACT 57.207 39.130 9.86 7.29 0.00 3.55
3818 3930 6.258068 ACAAAGTTGTACTAAGCTTGAGACAC 59.742 38.462 9.86 7.18 40.16 3.67
3819 3931 6.346096 ACAAAGTTGTACTAAGCTTGAGACA 58.654 36.000 9.86 7.12 40.16 3.41
3820 3932 6.846325 ACAAAGTTGTACTAAGCTTGAGAC 57.154 37.500 9.86 4.39 40.16 3.36
3843 3955 8.159447 TGTCTCACCTTTGTACTAACTCTAGTA 58.841 37.037 0.00 0.00 39.23 1.82
3844 3956 7.002879 TGTCTCACCTTTGTACTAACTCTAGT 58.997 38.462 0.00 0.00 41.43 2.57
3845 3957 7.175293 AGTGTCTCACCTTTGTACTAACTCTAG 59.825 40.741 0.00 0.00 34.49 2.43
3846 3958 7.002879 AGTGTCTCACCTTTGTACTAACTCTA 58.997 38.462 0.00 0.00 34.49 2.43
3847 3959 5.834204 AGTGTCTCACCTTTGTACTAACTCT 59.166 40.000 0.00 0.00 34.49 3.24
3848 3960 6.086785 AGTGTCTCACCTTTGTACTAACTC 57.913 41.667 0.00 0.00 34.49 3.01
3849 3961 6.481434 AAGTGTCTCACCTTTGTACTAACT 57.519 37.500 0.00 0.00 34.49 2.24
3850 3962 8.828688 AATAAGTGTCTCACCTTTGTACTAAC 57.171 34.615 0.00 0.00 34.49 2.34
3851 3963 9.841295 AAAATAAGTGTCTCACCTTTGTACTAA 57.159 29.630 0.00 0.00 34.49 2.24
3852 3964 9.268268 CAAAATAAGTGTCTCACCTTTGTACTA 57.732 33.333 0.00 0.00 34.49 1.82
3853 3965 7.228706 CCAAAATAAGTGTCTCACCTTTGTACT 59.771 37.037 0.00 0.00 34.49 2.73
3854 3966 7.360361 CCAAAATAAGTGTCTCACCTTTGTAC 58.640 38.462 0.00 0.00 34.49 2.90
3855 3967 6.488683 CCCAAAATAAGTGTCTCACCTTTGTA 59.511 38.462 0.00 0.00 34.49 2.41
3856 3968 5.301805 CCCAAAATAAGTGTCTCACCTTTGT 59.698 40.000 0.00 0.00 34.49 2.83
3857 3969 5.534654 TCCCAAAATAAGTGTCTCACCTTTG 59.465 40.000 0.00 3.05 34.49 2.77
3858 3970 5.701224 TCCCAAAATAAGTGTCTCACCTTT 58.299 37.500 0.00 0.00 34.49 3.11
3859 3971 5.319043 TCCCAAAATAAGTGTCTCACCTT 57.681 39.130 0.00 0.00 34.49 3.50
3860 3972 4.993705 TCCCAAAATAAGTGTCTCACCT 57.006 40.909 0.00 0.00 34.49 4.00
3861 3973 4.399303 CCATCCCAAAATAAGTGTCTCACC 59.601 45.833 0.00 0.00 34.49 4.02
3862 3974 5.253330 TCCATCCCAAAATAAGTGTCTCAC 58.747 41.667 0.00 0.00 34.10 3.51
3863 3975 5.500234 CTCCATCCCAAAATAAGTGTCTCA 58.500 41.667 0.00 0.00 0.00 3.27
3864 3976 4.884164 CCTCCATCCCAAAATAAGTGTCTC 59.116 45.833 0.00 0.00 0.00 3.36
3865 3977 4.325344 CCCTCCATCCCAAAATAAGTGTCT 60.325 45.833 0.00 0.00 0.00 3.41
3866 3978 3.954258 CCCTCCATCCCAAAATAAGTGTC 59.046 47.826 0.00 0.00 0.00 3.67
3867 3979 3.596046 TCCCTCCATCCCAAAATAAGTGT 59.404 43.478 0.00 0.00 0.00 3.55
3868 3980 4.210331 CTCCCTCCATCCCAAAATAAGTG 58.790 47.826 0.00 0.00 0.00 3.16
3869 3981 3.858638 ACTCCCTCCATCCCAAAATAAGT 59.141 43.478 0.00 0.00 0.00 2.24
3870 3982 4.526438 ACTCCCTCCATCCCAAAATAAG 57.474 45.455 0.00 0.00 0.00 1.73
3871 3983 5.293643 TCTACTCCCTCCATCCCAAAATAA 58.706 41.667 0.00 0.00 0.00 1.40
3872 3984 4.903149 TCTACTCCCTCCATCCCAAAATA 58.097 43.478 0.00 0.00 0.00 1.40
3873 3985 3.747852 TCTACTCCCTCCATCCCAAAAT 58.252 45.455 0.00 0.00 0.00 1.82
3874 3986 3.214694 TCTACTCCCTCCATCCCAAAA 57.785 47.619 0.00 0.00 0.00 2.44
3875 3987 2.961536 TCTACTCCCTCCATCCCAAA 57.038 50.000 0.00 0.00 0.00 3.28
3876 3988 2.961536 TTCTACTCCCTCCATCCCAA 57.038 50.000 0.00 0.00 0.00 4.12
3877 3989 2.961536 TTTCTACTCCCTCCATCCCA 57.038 50.000 0.00 0.00 0.00 4.37
3878 3990 4.464947 CATTTTTCTACTCCCTCCATCCC 58.535 47.826 0.00 0.00 0.00 3.85
3879 3991 4.166144 TCCATTTTTCTACTCCCTCCATCC 59.834 45.833 0.00 0.00 0.00 3.51
3880 3992 5.373812 TCCATTTTTCTACTCCCTCCATC 57.626 43.478 0.00 0.00 0.00 3.51
3881 3993 5.796502 TTCCATTTTTCTACTCCCTCCAT 57.203 39.130 0.00 0.00 0.00 3.41
3882 3994 5.592587 TTTCCATTTTTCTACTCCCTCCA 57.407 39.130 0.00 0.00 0.00 3.86
3883 3995 6.096987 GGATTTTCCATTTTTCTACTCCCTCC 59.903 42.308 0.00 0.00 36.28 4.30
3884 3996 6.663523 TGGATTTTCCATTTTTCTACTCCCTC 59.336 38.462 0.00 0.00 42.67 4.30
3885 3997 6.561294 TGGATTTTCCATTTTTCTACTCCCT 58.439 36.000 0.00 0.00 42.67 4.20
3886 3998 6.850752 TGGATTTTCCATTTTTCTACTCCC 57.149 37.500 0.00 0.00 42.67 4.30
3899 4011 4.099266 CACTTGTCTTTGGTGGATTTTCCA 59.901 41.667 0.00 0.00 45.98 3.53
3971 4083 1.187974 CATGGAATGGCAGAGGCAAA 58.812 50.000 0.00 0.00 41.79 3.68
3972 4084 0.332293 TCATGGAATGGCAGAGGCAA 59.668 50.000 0.00 0.00 46.73 4.52
3973 4085 0.106868 CTCATGGAATGGCAGAGGCA 60.107 55.000 0.00 0.00 46.73 4.75
3974 4086 0.106819 ACTCATGGAATGGCAGAGGC 60.107 55.000 0.00 0.00 46.73 4.70
3975 4087 1.809271 CGACTCATGGAATGGCAGAGG 60.809 57.143 0.00 0.00 46.73 3.69
3976 4088 1.579698 CGACTCATGGAATGGCAGAG 58.420 55.000 0.00 0.00 46.73 3.35
3977 4089 0.462581 GCGACTCATGGAATGGCAGA 60.463 55.000 0.00 0.00 46.73 4.26
3978 4090 0.463295 AGCGACTCATGGAATGGCAG 60.463 55.000 0.00 0.00 46.73 4.85
3979 4091 0.035152 AAGCGACTCATGGAATGGCA 60.035 50.000 0.00 0.00 46.73 4.92
3980 4092 0.659957 GAAGCGACTCATGGAATGGC 59.340 55.000 0.00 0.00 46.73 4.40
3981 4093 1.134280 AGGAAGCGACTCATGGAATGG 60.134 52.381 0.00 0.00 46.73 3.16
3983 4095 3.356529 AAAGGAAGCGACTCATGGAAT 57.643 42.857 0.00 0.00 0.00 3.01
3984 4096 2.859165 AAAGGAAGCGACTCATGGAA 57.141 45.000 0.00 0.00 0.00 3.53
3985 4097 2.813754 CAAAAAGGAAGCGACTCATGGA 59.186 45.455 0.00 0.00 0.00 3.41
3986 4098 2.669391 GCAAAAAGGAAGCGACTCATGG 60.669 50.000 0.00 0.00 0.00 3.66
3987 4099 2.589014 GCAAAAAGGAAGCGACTCATG 58.411 47.619 0.00 0.00 0.00 3.07
3988 4100 2.997485 GCAAAAAGGAAGCGACTCAT 57.003 45.000 0.00 0.00 0.00 2.90
3995 4107 1.629013 GCCATACGCAAAAAGGAAGC 58.371 50.000 0.00 0.00 37.47 3.86
4006 4118 4.109675 AGTGGGGGTGCCATACGC 62.110 66.667 0.00 0.00 41.21 4.42
4007 4119 2.189521 GAGTGGGGGTGCCATACG 59.810 66.667 0.00 0.00 0.00 3.06
4008 4120 2.595655 GGAGTGGGGGTGCCATAC 59.404 66.667 0.00 0.00 0.00 2.39
4009 4121 2.694616 GGGAGTGGGGGTGCCATA 60.695 66.667 0.00 0.00 0.00 2.74
4010 4122 4.701437 AGGGAGTGGGGGTGCCAT 62.701 66.667 0.00 0.00 0.00 4.40
4011 4123 4.938756 AAGGGAGTGGGGGTGCCA 62.939 66.667 0.00 0.00 0.00 4.92
4012 4124 3.590574 AAAGGGAGTGGGGGTGCC 61.591 66.667 0.00 0.00 0.00 5.01
4013 4125 2.283173 CAAAGGGAGTGGGGGTGC 60.283 66.667 0.00 0.00 0.00 5.01
4014 4126 2.440599 CCAAAGGGAGTGGGGGTG 59.559 66.667 0.00 0.00 35.59 4.61
4015 4127 3.590574 GCCAAAGGGAGTGGGGGT 61.591 66.667 0.00 0.00 36.58 4.95
4016 4128 3.589542 TGCCAAAGGGAGTGGGGG 61.590 66.667 0.00 0.00 36.58 5.40
4017 4129 2.036256 CTGCCAAAGGGAGTGGGG 59.964 66.667 0.00 0.00 36.37 4.96
4018 4130 2.677875 GCTGCCAAAGGGAGTGGG 60.678 66.667 6.44 0.00 43.30 4.61
4019 4131 1.304713 ATGCTGCCAAAGGGAGTGG 60.305 57.895 6.44 0.00 43.30 4.00
4020 4132 0.323178 AGATGCTGCCAAAGGGAGTG 60.323 55.000 6.44 0.00 43.30 3.51
4021 4133 1.065126 GTAGATGCTGCCAAAGGGAGT 60.065 52.381 6.44 0.00 43.30 3.85
4022 4134 1.211457 AGTAGATGCTGCCAAAGGGAG 59.789 52.381 0.00 0.00 44.25 4.30
4023 4135 1.289160 AGTAGATGCTGCCAAAGGGA 58.711 50.000 0.00 0.00 35.59 4.20
4024 4136 3.281727 TTAGTAGATGCTGCCAAAGGG 57.718 47.619 0.00 0.00 37.18 3.95
4025 4137 4.024556 CGAATTAGTAGATGCTGCCAAAGG 60.025 45.833 0.00 0.00 0.00 3.11
4026 4138 4.024556 CCGAATTAGTAGATGCTGCCAAAG 60.025 45.833 0.00 0.00 0.00 2.77
4027 4139 3.876914 CCGAATTAGTAGATGCTGCCAAA 59.123 43.478 0.00 0.00 0.00 3.28
4028 4140 3.133901 TCCGAATTAGTAGATGCTGCCAA 59.866 43.478 0.00 0.00 0.00 4.52
4029 4141 2.698274 TCCGAATTAGTAGATGCTGCCA 59.302 45.455 0.00 0.00 0.00 4.92
4030 4142 3.386768 TCCGAATTAGTAGATGCTGCC 57.613 47.619 0.00 0.00 0.00 4.85
4031 4143 4.372656 AGTTCCGAATTAGTAGATGCTGC 58.627 43.478 0.00 0.00 0.00 5.25
4032 4144 8.594881 ATTAAGTTCCGAATTAGTAGATGCTG 57.405 34.615 0.00 0.00 0.00 4.41
4033 4145 9.614792 AAATTAAGTTCCGAATTAGTAGATGCT 57.385 29.630 0.00 0.00 0.00 3.79
4034 4146 9.651718 CAAATTAAGTTCCGAATTAGTAGATGC 57.348 33.333 0.00 0.00 0.00 3.91
4040 4152 8.027189 GGCTTTCAAATTAAGTTCCGAATTAGT 58.973 33.333 0.00 0.00 0.00 2.24
4041 4153 8.026607 TGGCTTTCAAATTAAGTTCCGAATTAG 58.973 33.333 0.00 0.00 0.00 1.73
4042 4154 7.887381 TGGCTTTCAAATTAAGTTCCGAATTA 58.113 30.769 0.00 0.00 0.00 1.40
4043 4155 6.754193 TGGCTTTCAAATTAAGTTCCGAATT 58.246 32.000 0.00 0.00 0.00 2.17
4044 4156 6.339587 TGGCTTTCAAATTAAGTTCCGAAT 57.660 33.333 0.00 0.00 0.00 3.34
4045 4157 5.776173 TGGCTTTCAAATTAAGTTCCGAA 57.224 34.783 0.00 0.00 0.00 4.30
4046 4158 5.975693 ATGGCTTTCAAATTAAGTTCCGA 57.024 34.783 0.00 0.00 0.00 4.55
4047 4159 8.702163 AAATATGGCTTTCAAATTAAGTTCCG 57.298 30.769 0.00 0.00 0.00 4.30
4048 4160 8.807581 CGAAATATGGCTTTCAAATTAAGTTCC 58.192 33.333 0.00 0.00 35.32 3.62
4049 4161 9.567848 TCGAAATATGGCTTTCAAATTAAGTTC 57.432 29.630 0.00 0.00 35.32 3.01
4050 4162 9.353999 GTCGAAATATGGCTTTCAAATTAAGTT 57.646 29.630 0.00 0.00 35.32 2.66
4051 4163 7.973944 GGTCGAAATATGGCTTTCAAATTAAGT 59.026 33.333 0.00 0.00 35.32 2.24
4052 4164 7.435192 GGGTCGAAATATGGCTTTCAAATTAAG 59.565 37.037 0.00 0.00 35.32 1.85
4053 4165 7.262048 GGGTCGAAATATGGCTTTCAAATTAA 58.738 34.615 0.00 0.00 35.32 1.40
4054 4166 6.459024 CGGGTCGAAATATGGCTTTCAAATTA 60.459 38.462 0.00 0.00 35.32 1.40
4055 4167 5.660460 GGGTCGAAATATGGCTTTCAAATT 58.340 37.500 0.00 0.00 35.32 1.82
4056 4168 4.202010 CGGGTCGAAATATGGCTTTCAAAT 60.202 41.667 0.00 0.00 35.32 2.32
4057 4169 3.127895 CGGGTCGAAATATGGCTTTCAAA 59.872 43.478 0.00 0.00 35.32 2.69
4058 4170 2.680841 CGGGTCGAAATATGGCTTTCAA 59.319 45.455 0.00 0.00 35.32 2.69
4059 4171 2.285083 CGGGTCGAAATATGGCTTTCA 58.715 47.619 0.00 0.00 35.32 2.69
4060 4172 1.602377 CCGGGTCGAAATATGGCTTTC 59.398 52.381 0.00 0.00 32.84 2.62
4061 4173 1.210967 TCCGGGTCGAAATATGGCTTT 59.789 47.619 0.00 0.00 0.00 3.51
4062 4174 0.834612 TCCGGGTCGAAATATGGCTT 59.165 50.000 0.00 0.00 0.00 4.35
4063 4175 0.106149 GTCCGGGTCGAAATATGGCT 59.894 55.000 0.00 0.00 0.00 4.75
4064 4176 1.219522 CGTCCGGGTCGAAATATGGC 61.220 60.000 7.97 0.00 0.00 4.40
4065 4177 1.219522 GCGTCCGGGTCGAAATATGG 61.220 60.000 17.64 0.00 0.00 2.74
4066 4178 0.249322 AGCGTCCGGGTCGAAATATG 60.249 55.000 17.64 0.00 0.00 1.78
4067 4179 0.462789 AAGCGTCCGGGTCGAAATAT 59.537 50.000 17.64 0.00 0.00 1.28
4068 4180 0.247185 AAAGCGTCCGGGTCGAAATA 59.753 50.000 17.64 0.00 0.00 1.40
4069 4181 0.604511 AAAAGCGTCCGGGTCGAAAT 60.605 50.000 17.64 0.00 0.00 2.17
4070 4182 1.227615 AAAAGCGTCCGGGTCGAAA 60.228 52.632 17.64 0.00 0.00 3.46
4071 4183 1.957186 CAAAAGCGTCCGGGTCGAA 60.957 57.895 17.64 0.00 0.00 3.71
4072 4184 2.356553 CAAAAGCGTCCGGGTCGA 60.357 61.111 17.64 0.00 0.00 4.20
4073 4185 3.419759 CCAAAAGCGTCCGGGTCG 61.420 66.667 9.35 9.35 0.00 4.79
4074 4186 2.814913 ATCCCAAAAGCGTCCGGGTC 62.815 60.000 0.00 0.00 39.87 4.46
4075 4187 2.902457 ATCCCAAAAGCGTCCGGGT 61.902 57.895 0.00 0.00 39.87 5.28
4076 4188 2.045340 ATCCCAAAAGCGTCCGGG 60.045 61.111 0.00 0.45 40.32 5.73
4077 4189 3.051392 GCATCCCAAAAGCGTCCGG 62.051 63.158 0.00 0.00 0.00 5.14
4078 4190 1.586154 AAGCATCCCAAAAGCGTCCG 61.586 55.000 0.00 0.00 0.00 4.79
4079 4191 0.171231 GAAGCATCCCAAAAGCGTCC 59.829 55.000 0.00 0.00 31.93 4.79
4080 4192 1.168714 AGAAGCATCCCAAAAGCGTC 58.831 50.000 0.00 0.00 37.10 5.19
4081 4193 2.489938 TAGAAGCATCCCAAAAGCGT 57.510 45.000 0.00 0.00 0.00 5.07
4082 4194 5.273944 GTTATTAGAAGCATCCCAAAAGCG 58.726 41.667 0.00 0.00 0.00 4.68
4083 4195 5.127031 TGGTTATTAGAAGCATCCCAAAAGC 59.873 40.000 0.00 0.00 0.00 3.51
4084 4196 6.773976 TGGTTATTAGAAGCATCCCAAAAG 57.226 37.500 0.00 0.00 0.00 2.27
4085 4197 6.349777 CGTTGGTTATTAGAAGCATCCCAAAA 60.350 38.462 0.00 0.00 32.94 2.44
4086 4198 5.124776 CGTTGGTTATTAGAAGCATCCCAAA 59.875 40.000 0.00 0.00 32.94 3.28
4087 4199 4.638421 CGTTGGTTATTAGAAGCATCCCAA 59.362 41.667 0.00 0.00 0.00 4.12
4088 4200 4.080807 TCGTTGGTTATTAGAAGCATCCCA 60.081 41.667 0.00 0.00 0.00 4.37
4089 4201 4.448210 TCGTTGGTTATTAGAAGCATCCC 58.552 43.478 0.00 0.00 0.00 3.85
4090 4202 6.430451 CATTCGTTGGTTATTAGAAGCATCC 58.570 40.000 0.00 0.00 0.00 3.51
4091 4203 5.909610 GCATTCGTTGGTTATTAGAAGCATC 59.090 40.000 0.00 0.00 0.00 3.91
4092 4204 5.590259 AGCATTCGTTGGTTATTAGAAGCAT 59.410 36.000 0.00 0.00 29.87 3.79
4093 4205 4.941263 AGCATTCGTTGGTTATTAGAAGCA 59.059 37.500 0.00 0.00 29.87 3.91
4094 4206 5.485662 AGCATTCGTTGGTTATTAGAAGC 57.514 39.130 0.00 0.00 29.87 3.86
4095 4207 7.772332 ACTAGCATTCGTTGGTTATTAGAAG 57.228 36.000 0.00 0.00 37.26 2.85
4096 4208 9.256477 CATACTAGCATTCGTTGGTTATTAGAA 57.744 33.333 0.00 0.00 37.26 2.10
4097 4209 8.418662 ACATACTAGCATTCGTTGGTTATTAGA 58.581 33.333 0.00 0.00 37.26 2.10
4098 4210 8.487970 CACATACTAGCATTCGTTGGTTATTAG 58.512 37.037 0.00 0.00 37.26 1.73
4099 4211 8.198778 TCACATACTAGCATTCGTTGGTTATTA 58.801 33.333 0.00 0.00 37.26 0.98
4100 4212 7.045416 TCACATACTAGCATTCGTTGGTTATT 58.955 34.615 0.00 0.00 37.26 1.40
4101 4213 6.578944 TCACATACTAGCATTCGTTGGTTAT 58.421 36.000 0.00 0.00 37.26 1.89
4102 4214 5.968254 TCACATACTAGCATTCGTTGGTTA 58.032 37.500 0.00 0.00 37.26 2.85
4103 4215 4.827692 TCACATACTAGCATTCGTTGGTT 58.172 39.130 0.00 0.00 37.26 3.67
4104 4216 4.159693 TCTCACATACTAGCATTCGTTGGT 59.840 41.667 0.00 0.00 39.88 3.67
4105 4217 4.682787 TCTCACATACTAGCATTCGTTGG 58.317 43.478 0.00 0.00 0.00 3.77
4106 4218 4.742167 CCTCTCACATACTAGCATTCGTTG 59.258 45.833 0.00 0.00 0.00 4.10
4107 4219 4.737946 GCCTCTCACATACTAGCATTCGTT 60.738 45.833 0.00 0.00 0.00 3.85
4108 4220 3.243569 GCCTCTCACATACTAGCATTCGT 60.244 47.826 0.00 0.00 0.00 3.85
4109 4221 3.243535 TGCCTCTCACATACTAGCATTCG 60.244 47.826 0.00 0.00 0.00 3.34
4110 4222 4.305769 CTGCCTCTCACATACTAGCATTC 58.694 47.826 0.00 0.00 0.00 2.67
4111 4223 3.494048 GCTGCCTCTCACATACTAGCATT 60.494 47.826 0.00 0.00 0.00 3.56
4112 4224 2.036992 GCTGCCTCTCACATACTAGCAT 59.963 50.000 0.00 0.00 0.00 3.79
4113 4225 1.410517 GCTGCCTCTCACATACTAGCA 59.589 52.381 0.00 0.00 0.00 3.49
4161 4273 3.615056 ACCTTAAACAAGCAAACAAACGC 59.385 39.130 0.00 0.00 0.00 4.84
4162 4274 5.771602 AACCTTAAACAAGCAAACAAACG 57.228 34.783 0.00 0.00 0.00 3.60
4172 4284 4.213482 CCTGACCGAGAAACCTTAAACAAG 59.787 45.833 0.00 0.00 0.00 3.16
4236 4348 2.034687 CCTGACCCTTGGTGGCAG 59.965 66.667 0.00 4.62 35.25 4.85
4294 4406 9.173231 TCTCTCTATCTACTTGTATTACCTCCT 57.827 37.037 0.00 0.00 0.00 3.69
4332 4455 4.749245 AGGATGTGAAATGTTTGTCGAC 57.251 40.909 9.11 9.11 0.00 4.20
4335 4458 7.271223 CACGATTTAGGATGTGAAATGTTTGTC 59.729 37.037 0.00 0.00 34.29 3.18
4457 4580 1.227497 TCAGATGTGCGTGTGTGCA 60.227 52.632 0.00 0.00 43.95 4.57
4463 4586 0.601046 ACACTGGTCAGATGTGCGTG 60.601 55.000 4.84 0.00 35.33 5.34
4464 4587 0.106708 AACACTGGTCAGATGTGCGT 59.893 50.000 4.84 0.00 35.33 5.24
4465 4588 1.229428 AAACACTGGTCAGATGTGCG 58.771 50.000 4.84 0.00 35.33 5.34
4466 4589 4.829064 TTAAAACACTGGTCAGATGTGC 57.171 40.909 4.84 0.00 35.33 4.57
4552 4679 1.502231 CACTGAGGTTCCACTCAACG 58.498 55.000 0.00 0.00 46.05 4.10
4553 4680 1.230324 GCACTGAGGTTCCACTCAAC 58.770 55.000 0.00 0.00 46.05 3.18
4801 4935 0.249911 GAAGCCACACGACCAACTCT 60.250 55.000 0.00 0.00 0.00 3.24
4968 5102 4.134563 ACAACCTAGCAACGATGAAAACT 58.865 39.130 0.00 0.00 0.00 2.66
5047 5181 6.052360 GGAGAAGCTCTTGTTATTTCCCTAG 58.948 44.000 0.00 0.00 0.00 3.02
5141 5275 2.293399 GCCACGATCTTTTGAGGTGTTT 59.707 45.455 0.00 0.00 36.00 2.83
5154 5288 4.979197 TGTGTTTGTTATTTTGCCACGATC 59.021 37.500 0.00 0.00 0.00 3.69
5175 5309 7.275183 ACATACATGTACATCTGCAGTATTGT 58.725 34.615 14.67 17.20 39.68 2.71
5176 5310 7.719778 ACATACATGTACATCTGCAGTATTG 57.280 36.000 14.67 12.39 39.68 1.90
5212 5346 5.261209 TGACACAGAACCAAATCTTTTGG 57.739 39.130 15.66 15.66 44.91 3.28
5252 5386 9.920946 ACAAGGACCAATAAAACACTGATATAT 57.079 29.630 0.00 0.00 0.00 0.86
5253 5387 9.391006 GACAAGGACCAATAAAACACTGATATA 57.609 33.333 0.00 0.00 0.00 0.86
5273 5407 2.009774 GATGACAATGGTCCGACAAGG 58.990 52.381 0.00 0.00 43.65 3.61
5282 5416 2.423373 GCCCCATGTAGATGACAATGGT 60.423 50.000 0.46 0.00 42.78 3.55
5287 5421 0.689412 TCCGCCCCATGTAGATGACA 60.689 55.000 0.46 0.00 43.97 3.58
5289 5423 0.689412 TGTCCGCCCCATGTAGATGA 60.689 55.000 0.46 0.00 0.00 2.92
5303 5437 2.126307 CCAGCGACTCAGTGTCCG 60.126 66.667 0.00 0.00 42.49 4.79
5311 5445 2.711922 ATCACCGGACCAGCGACTC 61.712 63.158 9.46 0.00 0.00 3.36
5312 5446 2.680352 ATCACCGGACCAGCGACT 60.680 61.111 9.46 0.00 0.00 4.18
5313 5447 2.509336 CATCACCGGACCAGCGAC 60.509 66.667 9.46 0.00 0.00 5.19
5332 5466 3.223589 GCCGCAACCCACCAAGTT 61.224 61.111 0.00 0.00 0.00 2.66
5366 5500 0.952984 AAAGCAGAACTGGCGCTCTC 60.953 55.000 7.64 0.00 34.11 3.20
5367 5501 0.536006 AAAAGCAGAACTGGCGCTCT 60.536 50.000 7.64 0.00 34.11 4.09
5368 5502 0.386478 CAAAAGCAGAACTGGCGCTC 60.386 55.000 7.64 0.00 34.11 5.03
5369 5503 1.656441 CAAAAGCAGAACTGGCGCT 59.344 52.632 7.64 0.00 37.68 5.92
5370 5504 1.372128 CCAAAAGCAGAACTGGCGC 60.372 57.895 0.00 0.00 36.08 6.53
5371 5505 1.286880 CCCAAAAGCAGAACTGGCG 59.713 57.895 3.99 0.00 36.08 5.69
5372 5506 1.005748 GCCCAAAAGCAGAACTGGC 60.006 57.895 3.99 0.00 0.00 4.85
5373 5507 2.428834 TGCCCAAAAGCAGAACTGG 58.571 52.632 3.99 0.00 38.00 4.00
5380 5514 1.073125 TGCTACTACTGCCCAAAAGCA 59.927 47.619 0.00 0.00 41.46 3.91
5381 5515 1.821216 TGCTACTACTGCCCAAAAGC 58.179 50.000 0.00 0.00 0.00 3.51
5382 5516 4.737054 CATTTGCTACTACTGCCCAAAAG 58.263 43.478 0.00 0.00 0.00 2.27
5383 5517 3.056891 GCATTTGCTACTACTGCCCAAAA 60.057 43.478 0.00 0.00 38.21 2.44
5384 5518 2.491693 GCATTTGCTACTACTGCCCAAA 59.508 45.455 0.00 0.00 38.21 3.28
5385 5519 2.091541 GCATTTGCTACTACTGCCCAA 58.908 47.619 0.00 0.00 38.21 4.12
5386 5520 1.681780 GGCATTTGCTACTACTGCCCA 60.682 52.381 2.12 0.00 45.26 5.36
5387 5521 1.025041 GGCATTTGCTACTACTGCCC 58.975 55.000 2.12 0.00 45.26 5.36
5389 5523 3.531538 TGTAGGCATTTGCTACTACTGC 58.468 45.455 15.37 4.54 41.70 4.40
5390 5524 5.359756 TGATGTAGGCATTTGCTACTACTG 58.640 41.667 15.37 0.00 41.70 2.74
5391 5525 5.614324 TGATGTAGGCATTTGCTACTACT 57.386 39.130 15.37 3.17 41.70 2.57
5392 5526 6.929049 TGTATGATGTAGGCATTTGCTACTAC 59.071 38.462 2.12 7.16 41.70 2.73
5393 5527 7.061566 TGTATGATGTAGGCATTTGCTACTA 57.938 36.000 2.12 0.00 41.70 1.82
5394 5528 5.928976 TGTATGATGTAGGCATTTGCTACT 58.071 37.500 2.12 0.00 41.70 2.57
5395 5529 6.808008 ATGTATGATGTAGGCATTTGCTAC 57.192 37.500 2.12 4.32 41.70 3.58
5396 5530 7.650890 CAAATGTATGATGTAGGCATTTGCTA 58.349 34.615 13.04 0.00 44.74 3.49
5397 5531 6.509656 CAAATGTATGATGTAGGCATTTGCT 58.490 36.000 13.04 0.00 44.74 3.91
5398 5532 6.758593 CAAATGTATGATGTAGGCATTTGC 57.241 37.500 13.04 0.00 44.74 3.68
5400 5534 5.363292 TGGCAAATGTATGATGTAGGCATTT 59.637 36.000 0.00 0.00 39.44 2.32
5401 5535 4.894705 TGGCAAATGTATGATGTAGGCATT 59.105 37.500 0.00 0.00 35.07 3.56
5402 5536 4.472496 TGGCAAATGTATGATGTAGGCAT 58.528 39.130 0.00 0.00 38.18 4.40
5403 5537 3.895998 TGGCAAATGTATGATGTAGGCA 58.104 40.909 0.00 0.00 0.00 4.75
5404 5538 4.321452 CCATGGCAAATGTATGATGTAGGC 60.321 45.833 0.00 0.00 0.00 3.93
5405 5539 4.219070 CCCATGGCAAATGTATGATGTAGG 59.781 45.833 6.09 0.00 0.00 3.18
5406 5540 5.381174 CCCATGGCAAATGTATGATGTAG 57.619 43.478 6.09 0.00 0.00 2.74
5449 5583 4.084888 GTGCGTACCTTGCGGTGC 62.085 66.667 0.00 0.00 45.18 5.01
5450 5584 2.357034 AGTGCGTACCTTGCGGTG 60.357 61.111 0.00 0.00 45.18 4.94
5452 5586 0.459585 ATACAGTGCGTACCTTGCGG 60.460 55.000 0.00 0.00 31.27 5.69
5453 5587 2.117137 CTATACAGTGCGTACCTTGCG 58.883 52.381 0.00 0.00 31.27 4.85
5454 5588 3.160777 ACTATACAGTGCGTACCTTGC 57.839 47.619 0.00 0.00 32.25 4.01
5463 5597 1.002684 AGCGCTCGTACTATACAGTGC 60.003 52.381 2.64 12.22 40.39 4.40
5464 5598 2.659558 CGAGCGCTCGTACTATACAGTG 60.660 54.545 43.16 17.36 46.99 3.66
5465 5599 1.526041 CGAGCGCTCGTACTATACAGT 59.474 52.381 43.16 3.31 46.99 3.55
5466 5600 2.214397 CGAGCGCTCGTACTATACAG 57.786 55.000 43.16 18.06 46.99 2.74
5477 5611 4.908877 GTACTCGGGCGAGCGCTC 62.909 72.222 27.64 27.64 45.54 5.03
5479 5613 4.570663 ATGTACTCGGGCGAGCGC 62.571 66.667 6.27 6.27 45.54 5.92
5480 5614 2.655364 CATGTACTCGGGCGAGCG 60.655 66.667 0.00 0.00 45.54 5.03
5481 5615 2.279517 CCATGTACTCGGGCGAGC 60.280 66.667 0.00 0.00 45.54 5.03
5482 5616 2.417516 CCCATGTACTCGGGCGAG 59.582 66.667 7.17 0.00 46.91 5.03
5486 5620 2.189521 GGTGCCCATGTACTCGGG 59.810 66.667 14.09 14.09 46.15 5.14
5487 5621 2.202878 CGGTGCCCATGTACTCGG 60.203 66.667 0.00 0.00 0.00 4.63
5488 5622 2.890474 GCGGTGCCCATGTACTCG 60.890 66.667 0.00 0.00 0.00 4.18
5489 5623 2.845752 TTCGCGGTGCCCATGTACTC 62.846 60.000 6.13 0.00 0.00 2.59
5490 5624 2.949909 TTCGCGGTGCCCATGTACT 61.950 57.895 6.13 0.00 0.00 2.73
5491 5625 2.435234 TTCGCGGTGCCCATGTAC 60.435 61.111 6.13 0.00 0.00 2.90
5492 5626 2.435234 GTTCGCGGTGCCCATGTA 60.435 61.111 6.13 0.00 0.00 2.29
5505 5639 3.320078 CATAGTCGCGCCCGTTCG 61.320 66.667 0.00 0.00 35.54 3.95
5506 5640 3.627218 GCATAGTCGCGCCCGTTC 61.627 66.667 0.00 0.00 35.54 3.95
5507 5641 3.659089 AAGCATAGTCGCGCCCGTT 62.659 57.895 0.00 0.00 36.85 4.44
5508 5642 4.143333 AAGCATAGTCGCGCCCGT 62.143 61.111 0.00 0.00 36.85 5.28
5509 5643 3.330853 GAAGCATAGTCGCGCCCG 61.331 66.667 0.00 0.00 36.85 6.13
5510 5644 3.330853 CGAAGCATAGTCGCGCCC 61.331 66.667 0.00 0.00 36.85 6.13
5531 5665 4.914420 CGAGCGCTCCTACTGCCG 62.914 72.222 30.66 14.05 0.00 5.69
5534 5668 3.522731 AGGCGAGCGCTCCTACTG 61.523 66.667 30.66 17.55 41.60 2.74
5535 5669 3.522731 CAGGCGAGCGCTCCTACT 61.523 66.667 30.66 22.09 41.60 2.57
5536 5670 2.945398 CTTCAGGCGAGCGCTCCTAC 62.945 65.000 30.66 20.26 41.60 3.18
5537 5671 2.754254 TTCAGGCGAGCGCTCCTA 60.754 61.111 30.66 7.66 41.60 2.94
5538 5672 4.140599 CTTCAGGCGAGCGCTCCT 62.141 66.667 30.66 21.35 41.60 3.69
5578 5712 2.359850 TTAAGGCCCAGCGTGCTG 60.360 61.111 14.82 14.82 43.26 4.41
5579 5713 2.045926 CTTAAGGCCCAGCGTGCT 60.046 61.111 0.00 0.00 0.00 4.40
5580 5714 3.815396 GCTTAAGGCCCAGCGTGC 61.815 66.667 0.00 0.00 34.27 5.34
5584 5718 3.205536 GAGCGCTTAAGGCCCAGC 61.206 66.667 13.26 3.75 37.74 4.85
5585 5719 2.109126 GTGAGCGCTTAAGGCCCAG 61.109 63.158 13.26 0.00 37.74 4.45
5586 5720 2.046314 GTGAGCGCTTAAGGCCCA 60.046 61.111 13.26 0.00 37.74 5.36
5587 5721 0.960861 AAAGTGAGCGCTTAAGGCCC 60.961 55.000 13.26 0.00 37.74 5.80
5588 5722 0.881796 AAAAGTGAGCGCTTAAGGCC 59.118 50.000 13.26 0.00 37.74 5.19
5589 5723 2.226674 AGAAAAAGTGAGCGCTTAAGGC 59.773 45.455 13.26 6.24 37.64 4.35
5590 5724 4.467735 GAAGAAAAAGTGAGCGCTTAAGG 58.532 43.478 13.26 0.00 0.00 2.69
5591 5725 4.214332 AGGAAGAAAAAGTGAGCGCTTAAG 59.786 41.667 13.26 0.00 0.00 1.85
5592 5726 4.134563 AGGAAGAAAAAGTGAGCGCTTAA 58.865 39.130 13.26 0.00 0.00 1.85
5593 5727 3.740115 AGGAAGAAAAAGTGAGCGCTTA 58.260 40.909 13.26 3.74 0.00 3.09
5594 5728 2.576615 AGGAAGAAAAAGTGAGCGCTT 58.423 42.857 13.26 0.00 0.00 4.68
5595 5729 2.262423 AGGAAGAAAAAGTGAGCGCT 57.738 45.000 11.27 11.27 0.00 5.92
5596 5730 3.355626 AAAGGAAGAAAAAGTGAGCGC 57.644 42.857 0.00 0.00 0.00 5.92
5615 5749 9.905171 AGCAAAAGTAAAAAGAAAATGCAAAAA 57.095 22.222 0.00 0.00 33.89 1.94
5616 5750 9.905171 AAGCAAAAGTAAAAAGAAAATGCAAAA 57.095 22.222 0.00 0.00 33.89 2.44
5617 5751 9.905171 AAAGCAAAAGTAAAAAGAAAATGCAAA 57.095 22.222 0.00 0.00 33.89 3.68
5618 5752 9.553418 GAAAGCAAAAGTAAAAAGAAAATGCAA 57.447 25.926 0.00 0.00 33.89 4.08
5619 5753 8.725148 TGAAAGCAAAAGTAAAAAGAAAATGCA 58.275 25.926 0.00 0.00 33.89 3.96
5620 5754 9.720667 ATGAAAGCAAAAGTAAAAAGAAAATGC 57.279 25.926 0.00 0.00 0.00 3.56
5728 5862 9.443283 GTGCATGTTTAACATTTTTAAAATGCA 57.557 25.926 24.90 14.23 40.58 3.96
5729 5863 9.443283 TGTGCATGTTTAACATTTTTAAAATGC 57.557 25.926 24.90 13.16 36.53 3.56
5739 5873 9.762933 AGTAATTTTCTGTGCATGTTTAACATT 57.237 25.926 7.97 0.00 36.53 2.71
5740 5874 9.762933 AAGTAATTTTCTGTGCATGTTTAACAT 57.237 25.926 4.56 4.56 39.91 2.71
5741 5875 9.243637 GAAGTAATTTTCTGTGCATGTTTAACA 57.756 29.630 0.00 0.00 0.00 2.41
5742 5876 9.463443 AGAAGTAATTTTCTGTGCATGTTTAAC 57.537 29.630 0.00 0.00 36.12 2.01
5746 5880 9.846248 GATTAGAAGTAATTTTCTGTGCATGTT 57.154 29.630 3.14 0.00 37.91 2.71
5747 5881 9.236006 AGATTAGAAGTAATTTTCTGTGCATGT 57.764 29.630 3.14 0.00 37.91 3.21
5777 5911 9.639601 TGTTTTACACATGTTGTACATTTTTCA 57.360 25.926 0.00 0.00 40.60 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.