Multiple sequence alignment - TraesCS2B01G321000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G321000 chr2B 100.000 4561 0 0 1 4561 457684479 457679919 0.000000e+00 8423.0
1 TraesCS2B01G321000 chr2B 83.077 130 14 6 4402 4525 139915352 139915479 1.340000e-20 111.0
2 TraesCS2B01G321000 chr2D 96.018 2461 63 11 1660 4086 386583614 386581155 0.000000e+00 3969.0
3 TraesCS2B01G321000 chr2D 93.569 933 35 9 726 1657 386584559 386583651 0.000000e+00 1367.0
4 TraesCS2B01G321000 chr2D 89.266 736 52 15 1 722 386585325 386584603 0.000000e+00 896.0
5 TraesCS2B01G321000 chr2D 93.697 238 10 4 4120 4355 386581154 386580920 7.260000e-93 351.0
6 TraesCS2B01G321000 chr2D 92.708 96 5 2 4438 4531 587551809 587551904 2.210000e-28 137.0
7 TraesCS2B01G321000 chr2D 93.478 92 4 2 4444 4534 331604478 331604568 7.960000e-28 135.0
8 TraesCS2B01G321000 chr2A 96.653 1494 33 2 2621 4098 522841268 522839776 0.000000e+00 2466.0
9 TraesCS2B01G321000 chr2A 98.237 964 17 0 1660 2623 522842392 522841429 0.000000e+00 1687.0
10 TraesCS2B01G321000 chr2A 88.404 871 62 13 726 1587 522843267 522842427 0.000000e+00 1013.0
11 TraesCS2B01G321000 chr2A 90.489 736 49 15 1 728 522844035 522843313 0.000000e+00 952.0
12 TraesCS2B01G321000 chr2A 93.684 95 4 2 4438 4530 695163638 695163732 1.710000e-29 141.0
13 TraesCS2B01G321000 chr2A 100.000 31 0 0 4121 4151 28818824 28818854 1.770000e-04 58.4
14 TraesCS2B01G321000 chr2A 100.000 31 0 0 4162 4192 522824780 522824750 1.770000e-04 58.4
15 TraesCS2B01G321000 chr5B 91.346 104 6 2 4444 4544 431062080 431061977 6.150000e-29 139.0
16 TraesCS2B01G321000 chr5B 95.402 87 3 1 4444 4529 202239315 202239229 2.210000e-28 137.0
17 TraesCS2B01G321000 chr5B 90.476 105 3 5 4351 4448 508629541 508629645 1.030000e-26 132.0
18 TraesCS2B01G321000 chr5B 89.720 107 4 5 4349 4448 508629655 508629549 3.700000e-26 130.0
19 TraesCS2B01G321000 chr1B 94.505 91 3 2 4438 4526 138773764 138773674 6.150000e-29 139.0
20 TraesCS2B01G321000 chr4B 95.402 87 3 1 4444 4529 340640727 340640641 2.210000e-28 137.0
21 TraesCS2B01G321000 chr6D 91.000 100 6 2 4351 4448 129156505 129156603 1.030000e-26 132.0
22 TraesCS2B01G321000 chr6D 91.000 100 4 4 4352 4448 129156610 129156513 3.700000e-26 130.0
23 TraesCS2B01G321000 chr6D 84.672 137 11 7 4402 4531 81770328 81770461 1.330000e-25 128.0
24 TraesCS2B01G321000 chr6D 92.308 52 4 0 4069 4120 25612732 25612783 1.760000e-09 75.0
25 TraesCS2B01G321000 chr6D 80.220 91 8 8 4071 4152 196357994 196357905 4.930000e-05 60.2
26 TraesCS2B01G321000 chr6D 100.000 28 0 0 4121 4148 90892206 90892233 8.000000e-03 52.8
27 TraesCS2B01G321000 chr6D 100.000 28 0 0 4121 4148 115051924 115051951 8.000000e-03 52.8
28 TraesCS2B01G321000 chr7B 90.196 102 5 4 4352 4448 624570263 624570162 1.330000e-25 128.0
29 TraesCS2B01G321000 chr7B 93.878 49 3 0 4072 4120 296330826 296330874 1.760000e-09 75.0
30 TraesCS2B01G321000 chr7B 94.595 37 2 0 4121 4157 84214245 84214281 1.770000e-04 58.4
31 TraesCS2B01G321000 chr7B 100.000 31 0 0 4120 4150 220870897 220870927 1.770000e-04 58.4
32 TraesCS2B01G321000 chr4A 90.000 100 7 2 4351 4448 625267754 625267852 4.790000e-25 126.0
33 TraesCS2B01G321000 chr4A 94.231 52 3 0 4069 4120 670947063 670947114 3.780000e-11 80.5
34 TraesCS2B01G321000 chr4A 92.593 54 4 0 4067 4120 456483171 456483224 1.360000e-10 78.7
35 TraesCS2B01G321000 chr7D 88.182 110 6 5 4346 4448 490349110 490349001 1.720000e-24 124.0
36 TraesCS2B01G321000 chr7D 92.857 56 2 2 4072 4127 604972524 604972471 3.780000e-11 80.5
37 TraesCS2B01G321000 chr7D 100.000 30 0 0 4121 4150 136984117 136984146 6.370000e-04 56.5
38 TraesCS2B01G321000 chr6A 89.320 103 6 4 4348 4448 61597792 61597891 1.720000e-24 124.0
39 TraesCS2B01G321000 chr6A 97.059 34 0 1 4120 4152 572483345 572483312 6.370000e-04 56.5
40 TraesCS2B01G321000 chr3D 88.679 106 7 4 4348 4448 1921292 1921187 1.720000e-24 124.0
41 TraesCS2B01G321000 chr3D 85.366 123 14 2 4411 4529 33189054 33188932 1.720000e-24 124.0
42 TraesCS2B01G321000 chr3D 96.970 33 0 1 4121 4152 461529988 461530020 2.000000e-03 54.7
43 TraesCS2B01G321000 chr3B 93.220 59 2 2 4070 4128 516636724 516636668 8.130000e-13 86.1
44 TraesCS2B01G321000 chr3B 91.379 58 3 2 4070 4127 641529789 641529734 1.360000e-10 78.7
45 TraesCS2B01G321000 chr1D 93.220 59 3 1 4062 4120 15516880 15516937 8.130000e-13 86.1
46 TraesCS2B01G321000 chr1D 92.157 51 4 0 4071 4121 472562707 472562657 6.330000e-09 73.1
47 TraesCS2B01G321000 chr1D 81.111 90 6 8 4071 4150 349811154 349811066 1.370000e-05 62.1
48 TraesCS2B01G321000 chr1D 100.000 30 0 0 4120 4149 329729700 329729671 6.370000e-04 56.5
49 TraesCS2B01G321000 chr1D 88.889 45 3 2 4121 4165 15304310 15304268 2.000000e-03 54.7
50 TraesCS2B01G321000 chr1D 96.774 31 1 0 4121 4151 462985089 462985059 8.000000e-03 52.8
51 TraesCS2B01G321000 chr5A 92.982 57 2 2 4071 4127 23817591 23817537 1.050000e-11 82.4
52 TraesCS2B01G321000 chr5A 95.833 48 2 0 4072 4119 11519835 11519788 1.360000e-10 78.7
53 TraesCS2B01G321000 chr5A 93.878 49 3 0 4072 4120 12560717 12560765 1.760000e-09 75.0
54 TraesCS2B01G321000 chr5A 93.750 48 3 0 4073 4120 619718888 619718935 6.330000e-09 73.1
55 TraesCS2B01G321000 chr1A 89.655 58 4 2 4070 4127 290331274 290331219 6.330000e-09 73.1
56 TraesCS2B01G321000 chr6B 97.222 36 1 0 4121 4156 68514478 68514443 1.370000e-05 62.1
57 TraesCS2B01G321000 chr7A 92.683 41 3 0 4120 4160 126042174 126042134 4.930000e-05 60.2
58 TraesCS2B01G321000 chr5D 97.059 34 1 0 4116 4149 166628475 166628442 1.770000e-04 58.4
59 TraesCS2B01G321000 chr5D 96.970 33 1 0 4121 4153 520110211 520110179 6.370000e-04 56.5
60 TraesCS2B01G321000 chr5D 100.000 29 0 0 4121 4149 366007883 366007911 2.000000e-03 54.7
61 TraesCS2B01G321000 chr4D 100.000 29 0 0 4121 4149 418738537 418738509 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G321000 chr2B 457679919 457684479 4560 True 8423.00 8423 100.00000 1 4561 1 chr2B.!!$R1 4560
1 TraesCS2B01G321000 chr2D 386580920 386585325 4405 True 1645.75 3969 93.13750 1 4355 4 chr2D.!!$R1 4354
2 TraesCS2B01G321000 chr2A 522839776 522844035 4259 True 1529.50 2466 93.44575 1 4098 4 chr2A.!!$R2 4097

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
231 233 0.312102 GCCAAAGCTGTCACTTCACC 59.688 55.000 0.00 0.00 35.50 4.02 F
646 657 0.389391 ATTCGCCGATGTCCTACTGG 59.611 55.000 0.00 0.00 0.00 4.00 F
768 831 0.535102 GCGTACTACGGGGCCTAGTA 60.535 60.000 10.54 6.01 42.82 1.82 F
1342 1420 0.591741 GCGAATTGAGATGCAGCTGC 60.592 55.000 31.89 31.89 42.50 5.25 F
2696 2983 1.260561 CTTGTTGTGTACACAGGACGC 59.739 52.381 26.52 16.10 42.94 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1984 2105 0.606401 CACTCAATCCCGCCAACACT 60.606 55.000 0.00 0.0 0.00 3.55 R
2352 2473 8.789762 CCATATTCAGCAATCAATGACTCATTA 58.210 33.333 3.88 0.0 32.35 1.90 R
2671 2958 2.546778 CTGTGTACACAACAAGACCGT 58.453 47.619 27.66 0.0 40.63 4.83 R
3275 3562 3.316868 TCAGTCAGTTACACGACATGACA 59.683 43.478 0.00 0.0 42.11 3.58 R
4508 4819 0.115745 ACTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.0 0.00 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 2.925170 ACTTCGGTGCTGGGAGCT 60.925 61.111 0.00 0.00 42.97 4.09
143 144 2.072298 CAGCAAAAGAAGACCTCCTCG 58.928 52.381 0.00 0.00 0.00 4.63
146 147 0.325272 AAAAGAAGACCTCCTCGGGC 59.675 55.000 0.00 0.00 43.35 6.13
153 154 3.080121 CCTCCTCGGGCTGAGCTT 61.080 66.667 18.14 0.00 43.82 3.74
158 159 0.531532 CCTCGGGCTGAGCTTACATG 60.532 60.000 18.14 0.00 43.82 3.21
162 163 1.825622 GGCTGAGCTTACATGCCCC 60.826 63.158 3.72 0.00 37.81 5.80
164 165 1.918253 CTGAGCTTACATGCCCCCT 59.082 57.895 0.00 0.00 0.00 4.79
166 167 1.149401 GAGCTTACATGCCCCCTCC 59.851 63.158 0.00 0.00 0.00 4.30
167 168 2.195956 GCTTACATGCCCCCTCCC 59.804 66.667 0.00 0.00 0.00 4.30
168 169 2.386935 GCTTACATGCCCCCTCCCT 61.387 63.158 0.00 0.00 0.00 4.20
179 180 3.324713 CCTCCCTGGGCCTACTTG 58.675 66.667 8.22 0.00 0.00 3.16
185 186 0.625849 CCTGGGCCTACTTGTTGGAT 59.374 55.000 4.53 0.00 0.00 3.41
231 233 0.312102 GCCAAAGCTGTCACTTCACC 59.688 55.000 0.00 0.00 35.50 4.02
233 235 2.301346 CCAAAGCTGTCACTTCACCTT 58.699 47.619 0.00 0.00 0.00 3.50
409 413 0.397941 TCCTCTTGGCACCTGTTGAG 59.602 55.000 0.00 0.00 0.00 3.02
467 471 8.846943 TGTCAGATAATGATTGTGTAGTTTGT 57.153 30.769 0.00 0.00 40.92 2.83
491 501 4.621068 TTATCTGGCGAAAATTGCTCAG 57.379 40.909 0.00 0.00 34.20 3.35
515 525 5.426689 TCATGTCTGATGGATTATAGCCC 57.573 43.478 0.00 0.00 0.00 5.19
521 531 5.940470 GTCTGATGGATTATAGCCCGAAATT 59.060 40.000 0.00 0.00 0.00 1.82
534 544 3.672241 GCCCGAAATTGCGAAGTGTAAAT 60.672 43.478 7.61 0.00 0.00 1.40
535 545 4.095610 CCCGAAATTGCGAAGTGTAAATC 58.904 43.478 7.61 0.00 0.00 2.17
538 548 5.382303 CGAAATTGCGAAGTGTAAATCTGT 58.618 37.500 0.00 0.00 0.00 3.41
567 577 3.669023 GCGAAAGAGGCAGATTCAAACTG 60.669 47.826 0.00 0.00 38.27 3.16
569 579 4.023707 CGAAAGAGGCAGATTCAAACTGTT 60.024 41.667 0.00 0.00 37.64 3.16
570 580 5.506317 CGAAAGAGGCAGATTCAAACTGTTT 60.506 40.000 0.00 0.00 37.64 2.83
572 582 6.959639 AAGAGGCAGATTCAAACTGTTTAA 57.040 33.333 5.31 2.17 37.64 1.52
574 584 6.917533 AGAGGCAGATTCAAACTGTTTAATG 58.082 36.000 5.31 2.47 37.64 1.90
576 586 7.014615 AGAGGCAGATTCAAACTGTTTAATGTT 59.985 33.333 5.31 0.00 37.64 2.71
577 587 7.147976 AGGCAGATTCAAACTGTTTAATGTTC 58.852 34.615 5.31 0.15 37.64 3.18
578 588 6.088085 GGCAGATTCAAACTGTTTAATGTTCG 59.912 38.462 5.31 0.00 37.64 3.95
583 594 5.031578 TCAAACTGTTTAATGTTCGTGTGC 58.968 37.500 5.31 0.00 0.00 4.57
600 611 3.058501 GTGTGCTTGTGTGGTGGTATAAC 60.059 47.826 0.00 0.00 0.00 1.89
601 612 3.181449 TGTGCTTGTGTGGTGGTATAACT 60.181 43.478 0.00 0.00 0.00 2.24
602 613 4.040584 TGTGCTTGTGTGGTGGTATAACTA 59.959 41.667 0.00 0.00 0.00 2.24
603 614 4.998672 GTGCTTGTGTGGTGGTATAACTAA 59.001 41.667 0.00 0.00 0.00 2.24
606 617 5.488341 CTTGTGTGGTGGTATAACTAAGCT 58.512 41.667 0.00 0.00 0.00 3.74
607 618 5.492855 TGTGTGGTGGTATAACTAAGCTT 57.507 39.130 3.48 3.48 0.00 3.74
608 619 6.608539 TGTGTGGTGGTATAACTAAGCTTA 57.391 37.500 5.94 5.94 0.00 3.09
610 621 8.308851 TGTGTGGTGGTATAACTAAGCTTATA 57.691 34.615 6.64 0.00 0.00 0.98
611 622 8.199449 TGTGTGGTGGTATAACTAAGCTTATAC 58.801 37.037 6.64 7.53 38.25 1.47
612 623 8.419442 GTGTGGTGGTATAACTAAGCTTATACT 58.581 37.037 6.64 0.00 38.70 2.12
613 624 8.984855 TGTGGTGGTATAACTAAGCTTATACTT 58.015 33.333 6.64 1.93 38.70 2.24
614 625 9.828039 GTGGTGGTATAACTAAGCTTATACTTT 57.172 33.333 6.64 1.35 38.70 2.66
627 638 6.954232 AGCTTATACTTTGGCTTGGTACTTA 58.046 36.000 0.00 0.00 0.00 2.24
633 644 2.032680 TGGCTTGGTACTTATTCGCC 57.967 50.000 0.00 0.00 36.64 5.54
634 645 0.935196 GGCTTGGTACTTATTCGCCG 59.065 55.000 0.00 0.00 0.00 6.46
639 650 3.088194 TGGTACTTATTCGCCGATGTC 57.912 47.619 0.00 0.00 0.00 3.06
646 657 0.389391 ATTCGCCGATGTCCTACTGG 59.611 55.000 0.00 0.00 0.00 4.00
654 665 3.070159 CCGATGTCCTACTGGTGATGAAT 59.930 47.826 0.00 0.00 34.23 2.57
662 673 8.956426 TGTCCTACTGGTGATGAATTTTTAATC 58.044 33.333 0.00 0.00 34.23 1.75
680 693 9.598517 TTTTTAATCTTGTTTTTGAGCATGAGT 57.401 25.926 0.00 0.00 0.00 3.41
699 714 8.292448 GCATGAGTATTTATAATCCAACTGGTG 58.708 37.037 0.00 0.00 36.34 4.17
702 717 7.715249 TGAGTATTTATAATCCAACTGGTGAGC 59.285 37.037 0.00 0.00 36.34 4.26
711 726 2.615493 CCAACTGGTGAGCGAGGTAAAT 60.615 50.000 0.00 0.00 0.00 1.40
723 738 3.873952 GCGAGGTAAATCATGAGAGCTTT 59.126 43.478 0.09 0.00 0.00 3.51
743 806 5.567423 GCTTTGGTAGATGTTTCATTTGGCT 60.567 40.000 0.00 0.00 0.00 4.75
765 828 1.825191 CAGCGTACTACGGGGCCTA 60.825 63.158 10.54 0.00 42.82 3.93
766 829 1.527844 AGCGTACTACGGGGCCTAG 60.528 63.158 10.54 0.01 42.82 3.02
767 830 1.825622 GCGTACTACGGGGCCTAGT 60.826 63.158 10.54 7.12 42.82 2.57
768 831 0.535102 GCGTACTACGGGGCCTAGTA 60.535 60.000 10.54 6.01 42.82 1.82
803 866 3.550437 ACCCATTTCGAGATCAGGAAG 57.450 47.619 8.18 0.00 0.00 3.46
805 868 2.486191 CCCATTTCGAGATCAGGAAGGG 60.486 54.545 6.09 6.09 0.00 3.95
806 869 2.486191 CCATTTCGAGATCAGGAAGGGG 60.486 54.545 5.35 4.90 0.00 4.79
935 1002 3.300388 TCAAGACAGACAGACAGTTCCT 58.700 45.455 0.00 0.00 0.00 3.36
1014 1083 4.247380 GCCATGGCTCCTCCTCCG 62.247 72.222 29.98 0.00 38.26 4.63
1044 1113 1.106944 CGCTTCCTCTCCTCCTCCTC 61.107 65.000 0.00 0.00 0.00 3.71
1046 1115 0.933700 CTTCCTCTCCTCCTCCTCCT 59.066 60.000 0.00 0.00 0.00 3.69
1051 1120 0.996762 TCTCCTCCTCCTCCTCCTCC 60.997 65.000 0.00 0.00 0.00 4.30
1052 1121 2.015726 TCCTCCTCCTCCTCCTCCC 61.016 68.421 0.00 0.00 0.00 4.30
1053 1122 2.197324 CTCCTCCTCCTCCTCCCG 59.803 72.222 0.00 0.00 0.00 5.14
1080 1149 4.893601 GCGCCCTTCTCCGCTACC 62.894 72.222 0.00 0.00 46.14 3.18
1081 1150 4.570663 CGCCCTTCTCCGCTACCG 62.571 72.222 0.00 0.00 0.00 4.02
1152 1221 4.394712 AACTTCGAGGCGGCCCTG 62.395 66.667 17.02 8.72 43.12 4.45
1291 1369 2.026169 TCACTAGTCCCGAGAGATGTGT 60.026 50.000 0.00 0.00 0.00 3.72
1292 1370 2.356382 CACTAGTCCCGAGAGATGTGTC 59.644 54.545 0.00 0.00 0.00 3.67
1300 1378 1.514811 CGAGAGATGTGTCGCGAATTC 59.485 52.381 12.06 5.52 41.69 2.17
1305 1383 2.668457 AGATGTGTCGCGAATTCAGTTC 59.332 45.455 12.06 4.87 0.00 3.01
1342 1420 0.591741 GCGAATTGAGATGCAGCTGC 60.592 55.000 31.89 31.89 42.50 5.25
1597 1676 5.242393 AGAAATTATTGAGCTGCACACAAGT 59.758 36.000 1.02 0.00 32.12 3.16
1657 1736 6.672593 AGGGTATGTTTGGTTCATGACATAT 58.327 36.000 0.00 0.00 37.33 1.78
1720 1833 4.569943 TGTAAAGAGAATGTGTGGAGAGC 58.430 43.478 0.00 0.00 0.00 4.09
1768 1881 8.764287 CCAACCAATTAAGATTCAAAGAAACAC 58.236 33.333 0.00 0.00 0.00 3.32
1829 1950 2.041081 CCAAACAGACCCAGACCCATAA 59.959 50.000 0.00 0.00 0.00 1.90
1847 1968 6.828785 ACCCATAAGTGTATCAAGATGTTTCC 59.171 38.462 0.00 0.00 0.00 3.13
1984 2105 2.703416 CAGTTAGATGAAGCTGCACCA 58.297 47.619 0.00 0.00 0.00 4.17
2352 2473 2.074729 TGTTCATCGGTTTTGGGGTT 57.925 45.000 0.00 0.00 0.00 4.11
2671 2958 6.046593 CCACGTTTATGAGGCTAGTAAATGA 58.953 40.000 21.00 0.00 31.83 2.57
2696 2983 1.260561 CTTGTTGTGTACACAGGACGC 59.739 52.381 26.52 16.10 42.94 5.19
3275 3562 7.260603 GCTTGTCAGCATCCATTTTATAGTTT 58.739 34.615 0.00 0.00 46.49 2.66
3296 3583 3.638484 TGTCATGTCGTGTAACTGACTG 58.362 45.455 0.00 0.00 39.75 3.51
3374 3661 4.141642 GCATCCCAATTAAGCCAATTCCTT 60.142 41.667 0.00 0.00 34.49 3.36
3509 3796 2.234661 TGCTCTTCTCGGTGTCATGATT 59.765 45.455 0.00 0.00 0.00 2.57
3613 3903 3.292460 CAGGAGTTCTATCTCGGAGGTT 58.708 50.000 4.96 0.00 35.52 3.50
3677 3967 4.278419 AGGTTTTAGTGGTTGCTTGTGATC 59.722 41.667 0.00 0.00 0.00 2.92
3691 3981 1.000145 GTGATCTTCGCCGTTTCTCC 59.000 55.000 0.00 0.00 0.00 3.71
3859 4152 3.667497 ATGGTGTATCATACTCTGCCG 57.333 47.619 0.00 0.00 0.00 5.69
3880 4173 5.675323 GCCGAACTTTTGTACAACTGAACTT 60.675 40.000 8.07 0.00 0.00 2.66
3964 4257 2.232208 GGCCCTTCTGTCCAGATTTTTG 59.768 50.000 0.00 0.00 37.29 2.44
4083 4392 7.024345 TGAATAGATATGTACTCCCTCCGTA 57.976 40.000 0.00 0.00 0.00 4.02
4084 4393 7.464273 TGAATAGATATGTACTCCCTCCGTAA 58.536 38.462 0.00 0.00 0.00 3.18
4085 4394 7.946219 TGAATAGATATGTACTCCCTCCGTAAA 59.054 37.037 0.00 0.00 0.00 2.01
4086 4395 7.700022 ATAGATATGTACTCCCTCCGTAAAC 57.300 40.000 0.00 0.00 0.00 2.01
4087 4396 4.518211 AGATATGTACTCCCTCCGTAAACG 59.482 45.833 0.00 0.00 39.44 3.60
4088 4397 2.198827 TGTACTCCCTCCGTAAACGA 57.801 50.000 3.65 0.00 43.02 3.85
4089 4398 2.513753 TGTACTCCCTCCGTAAACGAA 58.486 47.619 3.65 0.00 43.02 3.85
4090 4399 3.091545 TGTACTCCCTCCGTAAACGAAT 58.908 45.455 3.65 0.00 43.02 3.34
4091 4400 4.269183 TGTACTCCCTCCGTAAACGAATA 58.731 43.478 3.65 0.00 43.02 1.75
4092 4401 4.889409 TGTACTCCCTCCGTAAACGAATAT 59.111 41.667 3.65 0.00 43.02 1.28
4093 4402 6.061441 TGTACTCCCTCCGTAAACGAATATA 58.939 40.000 3.65 0.00 43.02 0.86
4094 4403 6.545666 TGTACTCCCTCCGTAAACGAATATAA 59.454 38.462 3.65 0.00 43.02 0.98
4095 4404 6.081872 ACTCCCTCCGTAAACGAATATAAG 57.918 41.667 3.65 0.00 43.02 1.73
4096 4405 5.829924 ACTCCCTCCGTAAACGAATATAAGA 59.170 40.000 3.65 0.00 43.02 2.10
4097 4406 6.016443 ACTCCCTCCGTAAACGAATATAAGAG 60.016 42.308 3.65 0.39 43.02 2.85
4098 4407 5.829924 TCCCTCCGTAAACGAATATAAGAGT 59.170 40.000 3.65 0.00 43.02 3.24
4099 4408 5.919141 CCCTCCGTAAACGAATATAAGAGTG 59.081 44.000 3.65 0.00 43.02 3.51
4100 4409 6.238842 CCCTCCGTAAACGAATATAAGAGTGA 60.239 42.308 3.65 0.00 43.02 3.41
4101 4410 7.368833 CCTCCGTAAACGAATATAAGAGTGAT 58.631 38.462 3.65 0.00 43.02 3.06
4102 4411 7.537991 CCTCCGTAAACGAATATAAGAGTGATC 59.462 40.741 3.65 0.00 43.02 2.92
4103 4412 8.162878 TCCGTAAACGAATATAAGAGTGATCT 57.837 34.615 3.65 0.00 43.02 2.75
4121 4430 8.077836 AGTGATCTAAACGCTCTTATATTTGC 57.922 34.615 0.00 0.00 0.00 3.68
4122 4431 7.928706 AGTGATCTAAACGCTCTTATATTTGCT 59.071 33.333 0.00 0.00 0.00 3.91
4123 4432 8.217778 GTGATCTAAACGCTCTTATATTTGCTC 58.782 37.037 0.00 0.00 0.00 4.26
4124 4433 8.144478 TGATCTAAACGCTCTTATATTTGCTCT 58.856 33.333 0.00 0.00 0.00 4.09
4125 4434 8.894768 ATCTAAACGCTCTTATATTTGCTCTT 57.105 30.769 0.00 0.00 0.00 2.85
4126 4435 9.982651 ATCTAAACGCTCTTATATTTGCTCTTA 57.017 29.630 0.00 0.00 0.00 2.10
4127 4436 9.982651 TCTAAACGCTCTTATATTTGCTCTTAT 57.017 29.630 0.00 0.00 0.00 1.73
4143 4452 7.356089 TGCTCTTATATTTCTTTACGGAGGA 57.644 36.000 0.00 0.00 0.00 3.71
4192 4502 3.531538 TGACGATGCAGAATAAGAACCC 58.468 45.455 0.00 0.00 0.00 4.11
4196 4506 3.304257 CGATGCAGAATAAGAACCCATGC 60.304 47.826 0.00 0.00 0.00 4.06
4357 4668 5.715434 TTTTTGCCTTAACATGTACTCCC 57.285 39.130 0.00 0.00 0.00 4.30
4358 4669 4.650972 TTTGCCTTAACATGTACTCCCT 57.349 40.909 0.00 0.00 0.00 4.20
4359 4670 3.906720 TGCCTTAACATGTACTCCCTC 57.093 47.619 0.00 0.00 0.00 4.30
4360 4671 2.504175 TGCCTTAACATGTACTCCCTCC 59.496 50.000 0.00 0.00 0.00 4.30
4361 4672 2.483188 GCCTTAACATGTACTCCCTCCG 60.483 54.545 0.00 0.00 0.00 4.63
4362 4673 2.764572 CCTTAACATGTACTCCCTCCGT 59.235 50.000 0.00 0.00 0.00 4.69
4363 4674 3.181478 CCTTAACATGTACTCCCTCCGTC 60.181 52.174 0.00 0.00 0.00 4.79
4364 4675 2.233305 AACATGTACTCCCTCCGTCT 57.767 50.000 0.00 0.00 0.00 4.18
4365 4676 1.765230 ACATGTACTCCCTCCGTCTC 58.235 55.000 0.00 0.00 0.00 3.36
4366 4677 1.005569 ACATGTACTCCCTCCGTCTCA 59.994 52.381 0.00 0.00 0.00 3.27
4367 4678 2.100197 CATGTACTCCCTCCGTCTCAA 58.900 52.381 0.00 0.00 0.00 3.02
4368 4679 2.297698 TGTACTCCCTCCGTCTCAAA 57.702 50.000 0.00 0.00 0.00 2.69
4369 4680 2.600790 TGTACTCCCTCCGTCTCAAAA 58.399 47.619 0.00 0.00 0.00 2.44
4370 4681 3.170717 TGTACTCCCTCCGTCTCAAAAT 58.829 45.455 0.00 0.00 0.00 1.82
4371 4682 3.581332 TGTACTCCCTCCGTCTCAAAATT 59.419 43.478 0.00 0.00 0.00 1.82
4372 4683 3.336138 ACTCCCTCCGTCTCAAAATTC 57.664 47.619 0.00 0.00 0.00 2.17
4373 4684 2.027100 ACTCCCTCCGTCTCAAAATTCC 60.027 50.000 0.00 0.00 0.00 3.01
4374 4685 2.237392 CTCCCTCCGTCTCAAAATTCCT 59.763 50.000 0.00 0.00 0.00 3.36
4375 4686 2.027192 TCCCTCCGTCTCAAAATTCCTG 60.027 50.000 0.00 0.00 0.00 3.86
4376 4687 2.290323 CCCTCCGTCTCAAAATTCCTGT 60.290 50.000 0.00 0.00 0.00 4.00
4377 4688 3.003480 CCTCCGTCTCAAAATTCCTGTC 58.997 50.000 0.00 0.00 0.00 3.51
4378 4689 3.307059 CCTCCGTCTCAAAATTCCTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
4379 4690 4.319177 CTCCGTCTCAAAATTCCTGTCTT 58.681 43.478 0.00 0.00 0.00 3.01
4380 4691 5.477607 TCCGTCTCAAAATTCCTGTCTTA 57.522 39.130 0.00 0.00 0.00 2.10
4381 4692 5.479306 TCCGTCTCAAAATTCCTGTCTTAG 58.521 41.667 0.00 0.00 0.00 2.18
4382 4693 5.245301 TCCGTCTCAAAATTCCTGTCTTAGA 59.755 40.000 0.00 0.00 0.00 2.10
4383 4694 6.070767 TCCGTCTCAAAATTCCTGTCTTAGAT 60.071 38.462 0.00 0.00 0.00 1.98
4384 4695 6.595716 CCGTCTCAAAATTCCTGTCTTAGATT 59.404 38.462 0.00 0.00 0.00 2.40
4385 4696 7.119846 CCGTCTCAAAATTCCTGTCTTAGATTT 59.880 37.037 0.00 0.00 0.00 2.17
4386 4697 7.959651 CGTCTCAAAATTCCTGTCTTAGATTTG 59.040 37.037 0.00 0.00 0.00 2.32
4387 4698 8.787852 GTCTCAAAATTCCTGTCTTAGATTTGT 58.212 33.333 3.27 0.00 0.00 2.83
4388 4699 9.003658 TCTCAAAATTCCTGTCTTAGATTTGTC 57.996 33.333 3.27 0.00 0.00 3.18
4389 4700 8.924511 TCAAAATTCCTGTCTTAGATTTGTCT 57.075 30.769 3.27 0.00 0.00 3.41
4396 4707 8.155821 TCCTGTCTTAGATTTGTCTAGATACG 57.844 38.462 0.00 0.00 0.00 3.06
4397 4708 7.991460 TCCTGTCTTAGATTTGTCTAGATACGA 59.009 37.037 0.00 0.00 0.00 3.43
4398 4709 8.286800 CCTGTCTTAGATTTGTCTAGATACGAG 58.713 40.741 0.00 0.00 0.00 4.18
4399 4710 8.734218 TGTCTTAGATTTGTCTAGATACGAGT 57.266 34.615 0.00 0.00 0.00 4.18
4400 4711 8.828644 TGTCTTAGATTTGTCTAGATACGAGTC 58.171 37.037 0.00 0.00 0.00 3.36
4401 4712 9.048446 GTCTTAGATTTGTCTAGATACGAGTCT 57.952 37.037 0.00 0.00 34.97 3.24
4411 4722 4.888326 AGATACGAGTCTAGATACCCGT 57.112 45.455 13.35 13.35 0.00 5.28
4412 4723 5.991933 AGATACGAGTCTAGATACCCGTA 57.008 43.478 15.76 15.76 37.01 4.02
4413 4724 6.543430 AGATACGAGTCTAGATACCCGTAT 57.457 41.667 20.87 20.87 43.17 3.06
4414 4725 6.826893 GATACGAGTCTAGATACCCGTATC 57.173 45.833 25.24 25.24 45.85 2.24
4429 4740 9.228949 GATACCCGTATCTAGACAAATCTAAGA 57.771 37.037 7.47 0.00 36.98 2.10
4430 4741 7.274603 ACCCGTATCTAGACAAATCTAAGAC 57.725 40.000 0.00 0.00 36.98 3.01
4431 4742 6.832384 ACCCGTATCTAGACAAATCTAAGACA 59.168 38.462 0.00 0.00 36.98 3.41
4432 4743 7.341256 ACCCGTATCTAGACAAATCTAAGACAA 59.659 37.037 0.00 0.00 36.98 3.18
4433 4744 7.863375 CCCGTATCTAGACAAATCTAAGACAAG 59.137 40.741 0.00 0.00 36.98 3.16
4434 4745 8.622157 CCGTATCTAGACAAATCTAAGACAAGA 58.378 37.037 0.00 0.00 36.98 3.02
4442 4753 9.354673 AGACAAATCTAAGACAAGAATTTTGGA 57.645 29.630 0.00 0.00 33.04 3.53
4443 4754 9.965824 GACAAATCTAAGACAAGAATTTTGGAA 57.034 29.630 0.00 0.00 33.04 3.53
4444 4755 9.750125 ACAAATCTAAGACAAGAATTTTGGAAC 57.250 29.630 0.00 0.00 33.04 3.62
4445 4756 8.905702 CAAATCTAAGACAAGAATTTTGGAACG 58.094 33.333 5.68 0.00 28.49 3.95
4446 4757 6.554334 TCTAAGACAAGAATTTTGGAACGG 57.446 37.500 0.00 0.00 0.00 4.44
4447 4758 6.292923 TCTAAGACAAGAATTTTGGAACGGA 58.707 36.000 0.00 0.00 0.00 4.69
4448 4759 6.940298 TCTAAGACAAGAATTTTGGAACGGAT 59.060 34.615 0.00 0.00 0.00 4.18
4449 4760 5.376854 AGACAAGAATTTTGGAACGGATG 57.623 39.130 0.00 0.00 0.00 3.51
4450 4761 4.827284 AGACAAGAATTTTGGAACGGATGT 59.173 37.500 0.00 0.00 0.00 3.06
4451 4762 6.001460 AGACAAGAATTTTGGAACGGATGTA 58.999 36.000 0.00 0.00 0.00 2.29
4452 4763 6.659242 AGACAAGAATTTTGGAACGGATGTAT 59.341 34.615 0.00 0.00 0.00 2.29
4453 4764 6.852664 ACAAGAATTTTGGAACGGATGTATC 58.147 36.000 0.00 0.00 0.00 2.24
4454 4765 6.659242 ACAAGAATTTTGGAACGGATGTATCT 59.341 34.615 0.00 0.00 0.00 1.98
4455 4766 7.827236 ACAAGAATTTTGGAACGGATGTATCTA 59.173 33.333 0.00 0.00 0.00 1.98
4456 4767 8.673711 CAAGAATTTTGGAACGGATGTATCTAA 58.326 33.333 0.00 0.00 0.00 2.10
4457 4768 8.209917 AGAATTTTGGAACGGATGTATCTAAC 57.790 34.615 0.00 0.00 0.00 2.34
4458 4769 7.827236 AGAATTTTGGAACGGATGTATCTAACA 59.173 33.333 0.00 0.00 43.86 2.41
4459 4770 6.730960 TTTTGGAACGGATGTATCTAACAC 57.269 37.500 0.00 0.00 42.09 3.32
4460 4771 5.670792 TTGGAACGGATGTATCTAACACT 57.329 39.130 0.00 0.00 42.09 3.55
4461 4772 6.778834 TTGGAACGGATGTATCTAACACTA 57.221 37.500 0.00 0.00 42.09 2.74
4462 4773 6.778834 TGGAACGGATGTATCTAACACTAA 57.221 37.500 0.00 0.00 42.09 2.24
4463 4774 7.172868 TGGAACGGATGTATCTAACACTAAA 57.827 36.000 0.00 0.00 42.09 1.85
4464 4775 7.037438 TGGAACGGATGTATCTAACACTAAAC 58.963 38.462 0.00 0.00 42.09 2.01
4465 4776 6.197842 GGAACGGATGTATCTAACACTAAACG 59.802 42.308 0.00 0.00 42.09 3.60
4466 4777 6.199937 ACGGATGTATCTAACACTAAACGT 57.800 37.500 0.00 0.00 42.09 3.99
4467 4778 7.320443 ACGGATGTATCTAACACTAAACGTA 57.680 36.000 0.00 0.00 42.09 3.57
4468 4779 7.761409 ACGGATGTATCTAACACTAAACGTAA 58.239 34.615 0.00 0.00 42.09 3.18
4469 4780 7.698130 ACGGATGTATCTAACACTAAACGTAAC 59.302 37.037 0.00 0.00 42.09 2.50
4470 4781 7.912250 CGGATGTATCTAACACTAAACGTAACT 59.088 37.037 0.00 0.00 42.09 2.24
4481 4792 7.412853 ACACTAAACGTAACTAGATACATCCG 58.587 38.462 10.40 0.00 0.00 4.18
4482 4793 7.066284 ACACTAAACGTAACTAGATACATCCGT 59.934 37.037 10.40 0.16 0.00 4.69
4483 4794 8.551205 CACTAAACGTAACTAGATACATCCGTA 58.449 37.037 10.40 0.00 0.00 4.02
4484 4795 9.277783 ACTAAACGTAACTAGATACATCCGTAT 57.722 33.333 10.40 0.00 41.16 3.06
4489 4800 9.494271 ACGTAACTAGATACATCCGTATTTAGA 57.506 33.333 13.92 0.00 41.85 2.10
4490 4801 9.752274 CGTAACTAGATACATCCGTATTTAGAC 57.248 37.037 13.92 5.26 41.85 2.59
4492 4803 8.701908 AACTAGATACATCCGTATTTAGACCA 57.298 34.615 13.92 0.00 41.85 4.02
4493 4804 8.701908 ACTAGATACATCCGTATTTAGACCAA 57.298 34.615 13.92 0.00 41.85 3.67
4494 4805 9.310449 ACTAGATACATCCGTATTTAGACCAAT 57.690 33.333 13.92 0.00 41.85 3.16
4501 4812 9.106070 ACATCCGTATTTAGACCAATTTAAGAC 57.894 33.333 0.00 0.00 0.00 3.01
4502 4813 9.104965 CATCCGTATTTAGACCAATTTAAGACA 57.895 33.333 0.00 0.00 0.00 3.41
4503 4814 9.675464 ATCCGTATTTAGACCAATTTAAGACAA 57.325 29.630 0.00 0.00 0.00 3.18
4504 4815 9.504708 TCCGTATTTAGACCAATTTAAGACAAA 57.495 29.630 0.00 0.00 0.00 2.83
4513 4824 9.119418 AGACCAATTTAAGACAAAAATTTTGGG 57.881 29.630 20.79 11.77 35.00 4.12
4514 4825 9.114952 GACCAATTTAAGACAAAAATTTTGGGA 57.885 29.630 20.79 2.33 35.00 4.37
4515 4826 8.898761 ACCAATTTAAGACAAAAATTTTGGGAC 58.101 29.630 20.79 12.19 35.00 4.46
4516 4827 8.067189 CCAATTTAAGACAAAAATTTTGGGACG 58.933 33.333 20.79 0.00 35.00 4.79
4517 4828 7.722795 ATTTAAGACAAAAATTTTGGGACGG 57.277 32.000 20.79 0.00 0.00 4.79
4518 4829 6.466885 TTAAGACAAAAATTTTGGGACGGA 57.533 33.333 20.79 1.94 0.00 4.69
4519 4830 4.584327 AGACAAAAATTTTGGGACGGAG 57.416 40.909 20.79 0.00 0.00 4.63
4520 4831 3.320826 AGACAAAAATTTTGGGACGGAGG 59.679 43.478 20.79 0.00 0.00 4.30
4521 4832 2.367241 ACAAAAATTTTGGGACGGAGGG 59.633 45.455 20.79 0.00 0.00 4.30
4522 4833 2.630580 CAAAAATTTTGGGACGGAGGGA 59.369 45.455 10.41 0.00 0.00 4.20
4523 4834 2.215942 AAATTTTGGGACGGAGGGAG 57.784 50.000 0.00 0.00 0.00 4.30
4524 4835 1.073098 AATTTTGGGACGGAGGGAGT 58.927 50.000 0.00 0.00 0.00 3.85
4525 4836 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
4526 4837 1.272807 TTTTGGGACGGAGGGAGTAG 58.727 55.000 0.00 0.00 0.00 2.57
4527 4838 0.115745 TTTGGGACGGAGGGAGTAGT 59.884 55.000 0.00 0.00 0.00 2.73
4528 4839 1.002069 TTGGGACGGAGGGAGTAGTA 58.998 55.000 0.00 0.00 0.00 1.82
4529 4840 0.257039 TGGGACGGAGGGAGTAGTAC 59.743 60.000 0.00 0.00 0.00 2.73
4530 4841 0.550432 GGGACGGAGGGAGTAGTACT 59.450 60.000 1.37 1.37 0.00 2.73
4531 4842 1.677942 GGACGGAGGGAGTAGTACTG 58.322 60.000 7.76 0.00 0.00 2.74
4532 4843 1.064832 GGACGGAGGGAGTAGTACTGT 60.065 57.143 7.76 0.00 0.00 3.55
4533 4844 2.171448 GGACGGAGGGAGTAGTACTGTA 59.829 54.545 7.76 0.00 0.00 2.74
4534 4845 3.202097 GACGGAGGGAGTAGTACTGTAC 58.798 54.545 7.76 9.93 0.00 2.90
4535 4846 2.092699 ACGGAGGGAGTAGTACTGTACC 60.093 54.545 7.76 7.31 0.00 3.34
4536 4847 2.172293 CGGAGGGAGTAGTACTGTACCT 59.828 54.545 7.76 12.01 0.00 3.08
4537 4848 3.553904 GGAGGGAGTAGTACTGTACCTG 58.446 54.545 14.25 0.00 0.00 4.00
4538 4849 3.053768 GGAGGGAGTAGTACTGTACCTGT 60.054 52.174 14.25 0.00 0.00 4.00
4539 4850 4.569440 GGAGGGAGTAGTACTGTACCTGTT 60.569 50.000 14.25 0.00 0.00 3.16
4540 4851 4.598022 AGGGAGTAGTACTGTACCTGTTC 58.402 47.826 7.76 7.39 0.00 3.18
4541 4852 3.376546 GGGAGTAGTACTGTACCTGTTCG 59.623 52.174 7.76 0.00 0.00 3.95
4542 4853 3.376546 GGAGTAGTACTGTACCTGTTCGG 59.623 52.174 7.76 0.00 39.35 4.30
4544 4855 4.006319 AGTAGTACTGTACCTGTTCGGTC 58.994 47.826 14.05 0.00 44.93 4.79
4545 4856 2.165998 AGTACTGTACCTGTTCGGTCC 58.834 52.381 14.05 0.00 44.93 4.46
4546 4857 2.165998 GTACTGTACCTGTTCGGTCCT 58.834 52.381 6.70 0.00 44.93 3.85
4547 4858 0.966920 ACTGTACCTGTTCGGTCCTG 59.033 55.000 0.00 0.00 44.93 3.86
4548 4859 0.966920 CTGTACCTGTTCGGTCCTGT 59.033 55.000 0.00 0.00 44.93 4.00
4549 4860 0.963962 TGTACCTGTTCGGTCCTGTC 59.036 55.000 0.00 0.00 44.93 3.51
4550 4861 1.254954 GTACCTGTTCGGTCCTGTCT 58.745 55.000 0.00 0.00 44.93 3.41
4551 4862 1.067776 GTACCTGTTCGGTCCTGTCTG 60.068 57.143 0.00 0.00 44.93 3.51
4552 4863 0.759436 ACCTGTTCGGTCCTGTCTGT 60.759 55.000 0.00 0.00 44.93 3.41
4553 4864 1.254026 CCTGTTCGGTCCTGTCTGTA 58.746 55.000 0.00 0.00 0.00 2.74
4554 4865 1.616865 CCTGTTCGGTCCTGTCTGTAA 59.383 52.381 0.00 0.00 0.00 2.41
4555 4866 2.352814 CCTGTTCGGTCCTGTCTGTAAG 60.353 54.545 0.00 0.00 0.00 2.34
4556 4867 1.000506 TGTTCGGTCCTGTCTGTAAGC 59.999 52.381 0.00 0.00 0.00 3.09
4557 4868 1.272769 GTTCGGTCCTGTCTGTAAGCT 59.727 52.381 0.00 0.00 0.00 3.74
4558 4869 1.629043 TCGGTCCTGTCTGTAAGCTT 58.371 50.000 3.48 3.48 0.00 3.74
4559 4870 1.272490 TCGGTCCTGTCTGTAAGCTTG 59.728 52.381 9.86 0.00 0.00 4.01
4560 4871 1.000955 CGGTCCTGTCTGTAAGCTTGT 59.999 52.381 9.86 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 1.202710 ACACCGACACCAATGCTTACA 60.203 47.619 0.00 0.00 0.00 2.41
143 144 3.833304 GGCATGTAAGCTCAGCCC 58.167 61.111 0.00 0.00 39.42 5.19
146 147 0.179034 GAGGGGGCATGTAAGCTCAG 60.179 60.000 0.00 0.00 36.47 3.35
153 154 2.368192 CCAGGGAGGGGGCATGTA 60.368 66.667 0.00 0.00 0.00 2.29
162 163 1.208165 AACAAGTAGGCCCAGGGAGG 61.208 60.000 10.89 0.00 37.03 4.30
164 165 1.497309 CCAACAAGTAGGCCCAGGGA 61.497 60.000 10.89 0.00 0.00 4.20
166 167 0.625849 ATCCAACAAGTAGGCCCAGG 59.374 55.000 0.00 0.00 0.00 4.45
167 168 1.561542 AGATCCAACAAGTAGGCCCAG 59.438 52.381 0.00 0.00 0.00 4.45
168 169 1.668826 AGATCCAACAAGTAGGCCCA 58.331 50.000 0.00 0.00 0.00 5.36
231 233 7.230466 AGTAACACGAAACAACAAGAGTAAG 57.770 36.000 0.00 0.00 0.00 2.34
233 235 5.750067 GGAGTAACACGAAACAACAAGAGTA 59.250 40.000 0.00 0.00 0.00 2.59
409 413 2.904664 GCAAAGTGCAAAAGAGGCC 58.095 52.632 0.00 0.00 44.26 5.19
431 435 8.805688 CAATCATTATCTGACAGCATATAGACG 58.194 37.037 0.00 0.00 36.48 4.18
432 436 9.650539 ACAATCATTATCTGACAGCATATAGAC 57.349 33.333 0.00 0.00 36.48 2.59
434 438 9.433153 ACACAATCATTATCTGACAGCATATAG 57.567 33.333 0.00 0.00 36.48 1.31
467 471 6.542005 TCTGAGCAATTTTCGCCAGATAATAA 59.458 34.615 0.00 0.00 34.14 1.40
491 501 6.054295 GGGCTATAATCCATCAGACATGATC 58.946 44.000 0.00 0.00 44.58 2.92
509 519 1.670811 CACTTCGCAATTTCGGGCTAT 59.329 47.619 0.00 0.00 0.00 2.97
511 521 0.889186 ACACTTCGCAATTTCGGGCT 60.889 50.000 0.00 0.00 0.00 5.19
515 525 5.382303 ACAGATTTACACTTCGCAATTTCG 58.618 37.500 0.00 0.00 0.00 3.46
521 531 5.580691 CCATCTTACAGATTTACACTTCGCA 59.419 40.000 0.00 0.00 31.32 5.10
534 544 2.418746 GCCTCTTTCGCCATCTTACAGA 60.419 50.000 0.00 0.00 0.00 3.41
535 545 1.936547 GCCTCTTTCGCCATCTTACAG 59.063 52.381 0.00 0.00 0.00 2.74
538 548 1.831106 TCTGCCTCTTTCGCCATCTTA 59.169 47.619 0.00 0.00 0.00 2.10
567 577 4.204168 CACACAAGCACACGAACATTAAAC 59.796 41.667 0.00 0.00 0.00 2.01
569 579 3.242903 CCACACAAGCACACGAACATTAA 60.243 43.478 0.00 0.00 0.00 1.40
570 580 2.289274 CCACACAAGCACACGAACATTA 59.711 45.455 0.00 0.00 0.00 1.90
572 582 0.662619 CCACACAAGCACACGAACAT 59.337 50.000 0.00 0.00 0.00 2.71
574 584 0.248054 CACCACACAAGCACACGAAC 60.248 55.000 0.00 0.00 0.00 3.95
576 586 1.817520 CCACCACACAAGCACACGA 60.818 57.895 0.00 0.00 0.00 4.35
577 587 0.812014 TACCACCACACAAGCACACG 60.812 55.000 0.00 0.00 0.00 4.49
578 588 1.604604 ATACCACCACACAAGCACAC 58.395 50.000 0.00 0.00 0.00 3.82
583 594 5.488341 AGCTTAGTTATACCACCACACAAG 58.512 41.667 0.00 0.00 0.00 3.16
600 611 7.048512 AGTACCAAGCCAAAGTATAAGCTTAG 58.951 38.462 12.54 0.00 43.45 2.18
601 612 6.954232 AGTACCAAGCCAAAGTATAAGCTTA 58.046 36.000 8.99 8.99 43.45 3.09
602 613 5.816682 AGTACCAAGCCAAAGTATAAGCTT 58.183 37.500 3.48 3.48 46.10 3.74
603 614 5.437191 AGTACCAAGCCAAAGTATAAGCT 57.563 39.130 0.00 0.00 37.10 3.74
606 617 7.011669 GCGAATAAGTACCAAGCCAAAGTATAA 59.988 37.037 0.00 0.00 0.00 0.98
607 618 6.480981 GCGAATAAGTACCAAGCCAAAGTATA 59.519 38.462 0.00 0.00 0.00 1.47
608 619 5.296035 GCGAATAAGTACCAAGCCAAAGTAT 59.704 40.000 0.00 0.00 0.00 2.12
610 621 3.439129 GCGAATAAGTACCAAGCCAAAGT 59.561 43.478 0.00 0.00 0.00 2.66
611 622 3.181500 GGCGAATAAGTACCAAGCCAAAG 60.181 47.826 0.00 0.00 42.37 2.77
612 623 2.750712 GGCGAATAAGTACCAAGCCAAA 59.249 45.455 0.00 0.00 42.37 3.28
613 624 2.361789 GGCGAATAAGTACCAAGCCAA 58.638 47.619 0.00 0.00 42.37 4.52
614 625 1.741055 CGGCGAATAAGTACCAAGCCA 60.741 52.381 0.00 0.00 42.90 4.75
627 638 0.389391 CCAGTAGGACATCGGCGAAT 59.611 55.000 15.93 4.92 36.89 3.34
633 644 3.801114 TTCATCACCAGTAGGACATCG 57.199 47.619 0.00 0.00 38.69 3.84
634 645 7.396540 AAAAATTCATCACCAGTAGGACATC 57.603 36.000 0.00 0.00 38.69 3.06
639 650 9.793252 CAAGATTAAAAATTCATCACCAGTAGG 57.207 33.333 0.00 0.00 42.21 3.18
654 665 9.598517 ACTCATGCTCAAAAACAAGATTAAAAA 57.401 25.926 0.00 0.00 0.00 1.94
679 692 6.704493 TCGCTCACCAGTTGGATTATAAATAC 59.296 38.462 4.92 0.00 38.94 1.89
680 693 6.822442 TCGCTCACCAGTTGGATTATAAATA 58.178 36.000 4.92 0.00 38.94 1.40
681 694 5.680619 TCGCTCACCAGTTGGATTATAAAT 58.319 37.500 4.92 0.00 38.94 1.40
690 705 0.320374 TTACCTCGCTCACCAGTTGG 59.680 55.000 0.00 0.00 42.17 3.77
694 709 2.672961 TGATTTACCTCGCTCACCAG 57.327 50.000 0.00 0.00 0.00 4.00
699 714 3.056304 GCTCTCATGATTTACCTCGCTC 58.944 50.000 0.00 0.00 0.00 5.03
702 717 4.272018 CCAAAGCTCTCATGATTTACCTCG 59.728 45.833 0.00 0.00 0.00 4.63
711 726 5.426689 AACATCTACCAAAGCTCTCATGA 57.573 39.130 0.00 0.00 0.00 3.07
723 738 5.782047 CAAAGCCAAATGAAACATCTACCA 58.218 37.500 0.00 0.00 0.00 3.25
743 806 1.079681 CCCCGTAGTACGCTGCAAA 60.080 57.895 17.33 0.00 40.91 3.68
752 815 3.380471 TGTTTACTAGGCCCCGTAGTA 57.620 47.619 0.00 2.23 32.81 1.82
765 828 4.993028 TGGGTAGGAGCAATTTGTTTACT 58.007 39.130 0.00 0.00 0.00 2.24
766 829 5.914898 ATGGGTAGGAGCAATTTGTTTAC 57.085 39.130 0.00 0.00 0.00 2.01
767 830 6.349777 CGAAATGGGTAGGAGCAATTTGTTTA 60.350 38.462 0.00 0.00 0.00 2.01
768 831 5.566627 CGAAATGGGTAGGAGCAATTTGTTT 60.567 40.000 0.00 0.00 0.00 2.83
935 1002 2.197324 GGTGGTTCTGGTGCCCAA 59.803 61.111 0.00 0.00 30.80 4.12
1066 1135 4.222847 GGCGGTAGCGGAGAAGGG 62.223 72.222 17.08 0.00 46.35 3.95
1152 1221 3.389221 GAAGAGGAAATCGATGGAGCTC 58.611 50.000 4.71 4.71 0.00 4.09
1291 1369 2.407361 GTCGAAAGAACTGAATTCGCGA 59.593 45.455 3.71 3.71 44.04 5.87
1292 1370 2.408704 AGTCGAAAGAACTGAATTCGCG 59.591 45.455 0.00 0.00 44.04 5.87
1300 1378 2.738846 CCATGGACAGTCGAAAGAACTG 59.261 50.000 5.56 1.89 45.01 3.16
1305 1383 0.798776 GCACCATGGACAGTCGAAAG 59.201 55.000 21.47 0.00 0.00 2.62
1484 1562 4.395959 TTTAGGTCGCCTCATACGAATT 57.604 40.909 1.46 0.00 41.93 2.17
1565 1643 5.736358 GCAGCTCAATAATTTCTGTTCTTCG 59.264 40.000 0.00 0.00 0.00 3.79
1580 1658 2.267174 AGACTTGTGTGCAGCTCAAT 57.733 45.000 0.00 0.00 31.26 2.57
1597 1676 5.013079 TGGTAGGCTGAAAAGATCAAGAAGA 59.987 40.000 0.00 0.00 37.67 2.87
1657 1736 3.146066 CAACAAAGGGTCAAGGAATCGA 58.854 45.455 0.00 0.00 0.00 3.59
1720 1833 1.187974 TGCCAATGGAATCTTGCCAG 58.812 50.000 2.05 0.00 39.11 4.85
1847 1968 7.411486 TGAGGATCTAGTTAAGGTCAAGAAG 57.589 40.000 0.00 0.00 37.03 2.85
1907 2028 4.468153 AGACAGATACTCCAAAGTTCCCTC 59.532 45.833 0.00 0.00 36.92 4.30
1984 2105 0.606401 CACTCAATCCCGCCAACACT 60.606 55.000 0.00 0.00 0.00 3.55
2352 2473 8.789762 CCATATTCAGCAATCAATGACTCATTA 58.210 33.333 3.88 0.00 32.35 1.90
2671 2958 2.546778 CTGTGTACACAACAAGACCGT 58.453 47.619 27.66 0.00 40.63 4.83
2696 2983 6.331369 TGCCTTACAAAATCTTCCAAGAAG 57.669 37.500 0.00 0.00 38.77 2.85
3020 3307 6.706716 GGTAGCTGGAACAAGAATAGATTACC 59.293 42.308 0.00 0.00 38.70 2.85
3275 3562 3.316868 TCAGTCAGTTACACGACATGACA 59.683 43.478 0.00 0.00 42.11 3.58
3374 3661 2.996742 TCTCCCTGCTCTATATCCCTCA 59.003 50.000 0.00 0.00 0.00 3.86
3509 3796 7.093068 TGAGTATCATCTTGGCCAGTAAAGTAA 60.093 37.037 5.11 0.00 42.56 2.24
3585 3875 4.500545 CCGAGATAGAACTCCTGGTTGATG 60.501 50.000 0.00 0.00 38.41 3.07
3603 3893 1.066430 GTGGCAATACAACCTCCGAGA 60.066 52.381 0.00 0.00 0.00 4.04
3613 3903 3.561143 ACAGTTCAAAGGTGGCAATACA 58.439 40.909 0.00 0.00 0.00 2.29
3677 3967 3.460144 GACGGAGAAACGGCGAAG 58.540 61.111 16.62 0.00 38.39 3.79
3691 3981 1.134580 AGGACCTGATGATTGCTGACG 60.135 52.381 0.00 0.00 0.00 4.35
3764 4054 5.705905 GGAAGTGTTTCTAGCTTTACATGGT 59.294 40.000 0.00 0.00 33.68 3.55
3823 4116 4.894784 ACACCATATAACCCTCGCAATAG 58.105 43.478 0.00 0.00 0.00 1.73
3901 4194 1.645034 ACAGAGCGGATCACAATTCG 58.355 50.000 0.00 0.00 36.92 3.34
3964 4257 7.401484 TGAAGAGTTGACAAAACAAACAAAC 57.599 32.000 0.00 0.00 0.00 2.93
4083 4392 8.753175 GCGTTTAGATCACTCTTATATTCGTTT 58.247 33.333 0.00 0.00 32.66 3.60
4084 4393 8.136165 AGCGTTTAGATCACTCTTATATTCGTT 58.864 33.333 0.00 0.00 32.66 3.85
4085 4394 7.649973 AGCGTTTAGATCACTCTTATATTCGT 58.350 34.615 0.00 0.00 32.66 3.85
4086 4395 8.018520 AGAGCGTTTAGATCACTCTTATATTCG 58.981 37.037 0.00 0.00 37.82 3.34
4087 4396 9.685828 AAGAGCGTTTAGATCACTCTTATATTC 57.314 33.333 1.91 0.00 43.88 1.75
4094 4403 9.469807 CAAATATAAGAGCGTTTAGATCACTCT 57.530 33.333 0.00 0.00 39.34 3.24
4095 4404 8.217778 GCAAATATAAGAGCGTTTAGATCACTC 58.782 37.037 0.00 0.00 37.82 3.51
4096 4405 7.928706 AGCAAATATAAGAGCGTTTAGATCACT 59.071 33.333 0.00 0.00 37.82 3.41
4097 4406 8.077836 AGCAAATATAAGAGCGTTTAGATCAC 57.922 34.615 0.00 0.00 37.82 3.06
4098 4407 8.144478 AGAGCAAATATAAGAGCGTTTAGATCA 58.856 33.333 0.00 0.00 37.82 2.92
4099 4408 8.527567 AGAGCAAATATAAGAGCGTTTAGATC 57.472 34.615 0.00 0.00 35.01 2.75
4100 4409 8.894768 AAGAGCAAATATAAGAGCGTTTAGAT 57.105 30.769 0.00 0.00 0.00 1.98
4101 4410 9.982651 ATAAGAGCAAATATAAGAGCGTTTAGA 57.017 29.630 0.00 0.00 0.00 2.10
4118 4427 7.788026 TCCTCCGTAAAGAAATATAAGAGCAA 58.212 34.615 0.00 0.00 0.00 3.91
4119 4428 7.356089 TCCTCCGTAAAGAAATATAAGAGCA 57.644 36.000 0.00 0.00 0.00 4.26
4120 4429 7.927092 ACTTCCTCCGTAAAGAAATATAAGAGC 59.073 37.037 0.00 0.00 0.00 4.09
4128 4437 9.729281 TGTTTAATACTTCCTCCGTAAAGAAAT 57.271 29.630 0.00 0.00 0.00 2.17
4129 4438 9.729281 ATGTTTAATACTTCCTCCGTAAAGAAA 57.271 29.630 0.00 0.00 0.00 2.52
4130 4439 9.374838 GATGTTTAATACTTCCTCCGTAAAGAA 57.625 33.333 0.00 0.00 0.00 2.52
4131 4440 7.983484 GGATGTTTAATACTTCCTCCGTAAAGA 59.017 37.037 11.85 0.00 44.07 2.52
4132 4441 8.139521 GGATGTTTAATACTTCCTCCGTAAAG 57.860 38.462 11.85 0.00 44.07 1.85
4192 4502 4.430007 CCATTCCATTCAACAGAAGCATG 58.570 43.478 0.00 0.00 0.00 4.06
4196 4506 2.827322 TGCCCATTCCATTCAACAGAAG 59.173 45.455 0.00 0.00 0.00 2.85
4306 4616 6.952773 AAACAGAGTACATGTTAAGGCAAA 57.047 33.333 14.59 0.00 39.91 3.68
4352 4663 2.027100 GGAATTTTGAGACGGAGGGAGT 60.027 50.000 0.00 0.00 0.00 3.85
4355 4666 2.290323 ACAGGAATTTTGAGACGGAGGG 60.290 50.000 0.00 0.00 0.00 4.30
4356 4667 3.003480 GACAGGAATTTTGAGACGGAGG 58.997 50.000 0.00 0.00 0.00 4.30
4357 4668 3.931578 AGACAGGAATTTTGAGACGGAG 58.068 45.455 0.00 0.00 0.00 4.63
4358 4669 4.351874 AAGACAGGAATTTTGAGACGGA 57.648 40.909 0.00 0.00 0.00 4.69
4359 4670 5.479306 TCTAAGACAGGAATTTTGAGACGG 58.521 41.667 0.00 0.00 0.00 4.79
4360 4671 7.602517 AATCTAAGACAGGAATTTTGAGACG 57.397 36.000 0.00 0.00 0.00 4.18
4361 4672 8.787852 ACAAATCTAAGACAGGAATTTTGAGAC 58.212 33.333 0.00 0.00 0.00 3.36
4362 4673 8.924511 ACAAATCTAAGACAGGAATTTTGAGA 57.075 30.769 0.00 0.00 0.00 3.27
4363 4674 9.007901 AGACAAATCTAAGACAGGAATTTTGAG 57.992 33.333 0.00 0.00 31.46 3.02
4364 4675 8.924511 AGACAAATCTAAGACAGGAATTTTGA 57.075 30.769 0.00 0.00 31.46 2.69
4370 4681 8.622157 CGTATCTAGACAAATCTAAGACAGGAA 58.378 37.037 0.00 0.00 36.98 3.36
4371 4682 7.991460 TCGTATCTAGACAAATCTAAGACAGGA 59.009 37.037 0.00 0.00 36.98 3.86
4372 4683 8.155821 TCGTATCTAGACAAATCTAAGACAGG 57.844 38.462 0.00 0.00 36.98 4.00
4373 4684 8.832521 ACTCGTATCTAGACAAATCTAAGACAG 58.167 37.037 0.00 0.00 36.98 3.51
4374 4685 8.734218 ACTCGTATCTAGACAAATCTAAGACA 57.266 34.615 0.00 0.00 36.98 3.41
4375 4686 9.048446 AGACTCGTATCTAGACAAATCTAAGAC 57.952 37.037 0.00 0.00 36.98 3.01
4403 4714 9.228949 TCTTAGATTTGTCTAGATACGGGTATC 57.771 37.037 10.19 10.19 41.63 2.24
4404 4715 9.012161 GTCTTAGATTTGTCTAGATACGGGTAT 57.988 37.037 0.00 0.00 0.00 2.73
4405 4716 7.994911 TGTCTTAGATTTGTCTAGATACGGGTA 59.005 37.037 0.00 0.00 0.00 3.69
4406 4717 6.832384 TGTCTTAGATTTGTCTAGATACGGGT 59.168 38.462 0.00 0.00 0.00 5.28
4407 4718 7.273320 TGTCTTAGATTTGTCTAGATACGGG 57.727 40.000 0.00 0.00 0.00 5.28
4408 4719 8.622157 TCTTGTCTTAGATTTGTCTAGATACGG 58.378 37.037 0.00 0.00 0.00 4.02
4416 4727 9.354673 TCCAAAATTCTTGTCTTAGATTTGTCT 57.645 29.630 0.00 0.00 28.79 3.41
4417 4728 9.965824 TTCCAAAATTCTTGTCTTAGATTTGTC 57.034 29.630 0.00 0.00 28.79 3.18
4418 4729 9.750125 GTTCCAAAATTCTTGTCTTAGATTTGT 57.250 29.630 0.00 0.00 28.79 2.83
4419 4730 8.905702 CGTTCCAAAATTCTTGTCTTAGATTTG 58.094 33.333 0.00 0.00 29.84 2.32
4420 4731 8.082242 CCGTTCCAAAATTCTTGTCTTAGATTT 58.918 33.333 0.00 0.00 0.00 2.17
4421 4732 7.447238 TCCGTTCCAAAATTCTTGTCTTAGATT 59.553 33.333 0.00 0.00 0.00 2.40
4422 4733 6.940298 TCCGTTCCAAAATTCTTGTCTTAGAT 59.060 34.615 0.00 0.00 0.00 1.98
4423 4734 6.292923 TCCGTTCCAAAATTCTTGTCTTAGA 58.707 36.000 0.00 0.00 0.00 2.10
4424 4735 6.554334 TCCGTTCCAAAATTCTTGTCTTAG 57.446 37.500 0.00 0.00 0.00 2.18
4425 4736 6.488683 ACATCCGTTCCAAAATTCTTGTCTTA 59.511 34.615 0.00 0.00 0.00 2.10
4426 4737 5.301805 ACATCCGTTCCAAAATTCTTGTCTT 59.698 36.000 0.00 0.00 0.00 3.01
4427 4738 4.827284 ACATCCGTTCCAAAATTCTTGTCT 59.173 37.500 0.00 0.00 0.00 3.41
4428 4739 5.121221 ACATCCGTTCCAAAATTCTTGTC 57.879 39.130 0.00 0.00 0.00 3.18
4429 4740 6.659242 AGATACATCCGTTCCAAAATTCTTGT 59.341 34.615 0.00 0.00 0.00 3.16
4430 4741 7.088589 AGATACATCCGTTCCAAAATTCTTG 57.911 36.000 0.00 0.00 0.00 3.02
4431 4742 8.674607 GTTAGATACATCCGTTCCAAAATTCTT 58.325 33.333 0.00 0.00 0.00 2.52
4432 4743 7.827236 TGTTAGATACATCCGTTCCAAAATTCT 59.173 33.333 0.00 0.00 0.00 2.40
4433 4744 7.908601 GTGTTAGATACATCCGTTCCAAAATTC 59.091 37.037 0.00 0.00 39.39 2.17
4434 4745 7.610305 AGTGTTAGATACATCCGTTCCAAAATT 59.390 33.333 0.00 0.00 39.39 1.82
4435 4746 7.110155 AGTGTTAGATACATCCGTTCCAAAAT 58.890 34.615 0.00 0.00 39.39 1.82
4436 4747 6.469410 AGTGTTAGATACATCCGTTCCAAAA 58.531 36.000 0.00 0.00 39.39 2.44
4437 4748 6.045072 AGTGTTAGATACATCCGTTCCAAA 57.955 37.500 0.00 0.00 39.39 3.28
4438 4749 5.670792 AGTGTTAGATACATCCGTTCCAA 57.329 39.130 0.00 0.00 39.39 3.53
4439 4750 6.778834 TTAGTGTTAGATACATCCGTTCCA 57.221 37.500 0.00 0.00 39.39 3.53
4440 4751 6.197842 CGTTTAGTGTTAGATACATCCGTTCC 59.802 42.308 0.00 0.00 39.39 3.62
4441 4752 6.749118 ACGTTTAGTGTTAGATACATCCGTTC 59.251 38.462 0.00 0.00 39.39 3.95
4442 4753 6.624423 ACGTTTAGTGTTAGATACATCCGTT 58.376 36.000 0.00 0.00 39.39 4.44
4443 4754 6.199937 ACGTTTAGTGTTAGATACATCCGT 57.800 37.500 0.00 0.00 39.39 4.69
4444 4755 7.912250 AGTTACGTTTAGTGTTAGATACATCCG 59.088 37.037 0.00 0.00 39.39 4.18
4455 4766 7.912250 CGGATGTATCTAGTTACGTTTAGTGTT 59.088 37.037 0.00 0.00 0.00 3.32
4456 4767 7.066284 ACGGATGTATCTAGTTACGTTTAGTGT 59.934 37.037 0.00 1.25 0.00 3.55
4457 4768 7.412853 ACGGATGTATCTAGTTACGTTTAGTG 58.587 38.462 0.00 0.78 0.00 2.74
4458 4769 7.559590 ACGGATGTATCTAGTTACGTTTAGT 57.440 36.000 0.00 5.64 0.00 2.24
4463 4774 9.494271 TCTAAATACGGATGTATCTAGTTACGT 57.506 33.333 5.54 5.54 40.42 3.57
4464 4775 9.752274 GTCTAAATACGGATGTATCTAGTTACG 57.248 37.037 6.50 0.00 40.42 3.18
4466 4777 9.797642 TGGTCTAAATACGGATGTATCTAGTTA 57.202 33.333 0.00 0.00 40.42 2.24
4467 4778 8.701908 TGGTCTAAATACGGATGTATCTAGTT 57.298 34.615 0.00 0.00 40.42 2.24
4468 4779 8.701908 TTGGTCTAAATACGGATGTATCTAGT 57.298 34.615 0.00 0.00 40.42 2.57
4475 4786 9.106070 GTCTTAAATTGGTCTAAATACGGATGT 57.894 33.333 0.00 0.00 0.00 3.06
4476 4787 9.104965 TGTCTTAAATTGGTCTAAATACGGATG 57.895 33.333 0.00 0.00 0.00 3.51
4477 4788 9.675464 TTGTCTTAAATTGGTCTAAATACGGAT 57.325 29.630 0.00 0.00 0.00 4.18
4478 4789 9.504708 TTTGTCTTAAATTGGTCTAAATACGGA 57.495 29.630 0.00 0.00 0.00 4.69
4487 4798 9.119418 CCCAAAATTTTTGTCTTAAATTGGTCT 57.881 29.630 18.05 0.00 35.85 3.85
4488 4799 9.114952 TCCCAAAATTTTTGTCTTAAATTGGTC 57.885 29.630 18.05 0.00 35.85 4.02
4489 4800 8.898761 GTCCCAAAATTTTTGTCTTAAATTGGT 58.101 29.630 18.05 0.00 35.85 3.67
4490 4801 8.067189 CGTCCCAAAATTTTTGTCTTAAATTGG 58.933 33.333 18.05 10.15 35.85 3.16
4491 4802 8.067189 CCGTCCCAAAATTTTTGTCTTAAATTG 58.933 33.333 18.05 2.64 35.85 2.32
4492 4803 7.988028 TCCGTCCCAAAATTTTTGTCTTAAATT 59.012 29.630 18.05 0.00 36.91 1.82
4493 4804 7.501844 TCCGTCCCAAAATTTTTGTCTTAAAT 58.498 30.769 18.05 0.00 0.00 1.40
4494 4805 6.875076 TCCGTCCCAAAATTTTTGTCTTAAA 58.125 32.000 18.05 0.69 0.00 1.52
4495 4806 6.461788 CCTCCGTCCCAAAATTTTTGTCTTAA 60.462 38.462 18.05 2.01 0.00 1.85
4496 4807 5.010213 CCTCCGTCCCAAAATTTTTGTCTTA 59.990 40.000 18.05 1.26 0.00 2.10
4497 4808 4.202212 CCTCCGTCCCAAAATTTTTGTCTT 60.202 41.667 18.05 0.00 0.00 3.01
4498 4809 3.320826 CCTCCGTCCCAAAATTTTTGTCT 59.679 43.478 18.05 0.00 0.00 3.41
4499 4810 3.554129 CCCTCCGTCCCAAAATTTTTGTC 60.554 47.826 18.05 9.04 0.00 3.18
4500 4811 2.367241 CCCTCCGTCCCAAAATTTTTGT 59.633 45.455 18.05 0.00 0.00 2.83
4501 4812 2.630580 TCCCTCCGTCCCAAAATTTTTG 59.369 45.455 13.76 13.76 0.00 2.44
4502 4813 2.897326 CTCCCTCCGTCCCAAAATTTTT 59.103 45.455 0.00 0.00 0.00 1.94
4503 4814 2.158370 ACTCCCTCCGTCCCAAAATTTT 60.158 45.455 0.00 0.00 0.00 1.82
4504 4815 1.427753 ACTCCCTCCGTCCCAAAATTT 59.572 47.619 0.00 0.00 0.00 1.82
4505 4816 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
4506 4817 1.838077 CTACTCCCTCCGTCCCAAAAT 59.162 52.381 0.00 0.00 0.00 1.82
4507 4818 1.272807 CTACTCCCTCCGTCCCAAAA 58.727 55.000 0.00 0.00 0.00 2.44
4508 4819 0.115745 ACTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
4509 4820 1.002069 TACTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
4510 4821 0.257039 GTACTACTCCCTCCGTCCCA 59.743 60.000 0.00 0.00 0.00 4.37
4511 4822 0.550432 AGTACTACTCCCTCCGTCCC 59.450 60.000 0.00 0.00 0.00 4.46
4512 4823 1.064832 ACAGTACTACTCCCTCCGTCC 60.065 57.143 0.00 0.00 0.00 4.79
4513 4824 2.416680 ACAGTACTACTCCCTCCGTC 57.583 55.000 0.00 0.00 0.00 4.79
4514 4825 2.092699 GGTACAGTACTACTCCCTCCGT 60.093 54.545 10.62 0.00 0.00 4.69
4515 4826 2.172293 AGGTACAGTACTACTCCCTCCG 59.828 54.545 10.62 0.00 0.00 4.63
4516 4827 3.053768 ACAGGTACAGTACTACTCCCTCC 60.054 52.174 10.62 0.00 0.00 4.30
4517 4828 4.233632 ACAGGTACAGTACTACTCCCTC 57.766 50.000 10.62 0.00 0.00 4.30
4518 4829 4.598022 GAACAGGTACAGTACTACTCCCT 58.402 47.826 10.62 0.00 0.00 4.20
4519 4830 3.376546 CGAACAGGTACAGTACTACTCCC 59.623 52.174 10.62 0.00 0.00 4.30
4520 4831 3.376546 CCGAACAGGTACAGTACTACTCC 59.623 52.174 10.62 0.00 34.51 3.85
4521 4832 4.612932 CCGAACAGGTACAGTACTACTC 57.387 50.000 10.62 2.51 34.51 2.59
4535 4846 2.927014 GCTTACAGACAGGACCGAACAG 60.927 54.545 0.00 0.00 0.00 3.16
4536 4847 1.000506 GCTTACAGACAGGACCGAACA 59.999 52.381 0.00 0.00 0.00 3.18
4537 4848 1.272769 AGCTTACAGACAGGACCGAAC 59.727 52.381 0.00 0.00 0.00 3.95
4538 4849 1.629043 AGCTTACAGACAGGACCGAA 58.371 50.000 0.00 0.00 0.00 4.30
4539 4850 1.272490 CAAGCTTACAGACAGGACCGA 59.728 52.381 0.00 0.00 0.00 4.69
4540 4851 1.000955 ACAAGCTTACAGACAGGACCG 59.999 52.381 0.00 0.00 0.00 4.79
4541 4852 2.841442 ACAAGCTTACAGACAGGACC 57.159 50.000 0.00 0.00 0.00 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.