Multiple sequence alignment - TraesCS2B01G320500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G320500 chr2B 100.000 6270 0 0 1 6270 457108102 457114371 0.000000e+00 11579.0
1 TraesCS2B01G320500 chr2B 87.654 81 10 0 1253 1333 801162567 801162647 1.860000e-15 95.3
2 TraesCS2B01G320500 chr2D 93.129 3202 120 44 1 3149 386247676 386250830 0.000000e+00 4602.0
3 TraesCS2B01G320500 chr2D 93.884 1537 54 14 4363 5875 386251885 386253405 0.000000e+00 2281.0
4 TraesCS2B01G320500 chr2D 97.605 1002 20 3 3169 4167 386250816 386251816 0.000000e+00 1714.0
5 TraesCS2B01G320500 chr2D 97.682 302 6 1 5969 6270 386253404 386253704 9.320000e-143 518.0
6 TraesCS2B01G320500 chr2D 94.350 177 9 1 4189 4365 309971593 309971418 2.880000e-68 270.0
7 TraesCS2B01G320500 chr2D 92.473 186 12 2 4191 4376 645996954 645997137 1.340000e-66 265.0
8 TraesCS2B01G320500 chr2D 93.578 109 7 0 5867 5975 445894987 445894879 5.030000e-36 163.0
9 TraesCS2B01G320500 chr2D 87.654 81 10 0 1253 1333 640298895 640298815 1.860000e-15 95.3
10 TraesCS2B01G320500 chr2A 94.491 2287 81 29 894 3149 522072400 522074672 0.000000e+00 3483.0
11 TraesCS2B01G320500 chr2A 96.777 1179 28 8 4415 5585 522076120 522077296 0.000000e+00 1958.0
12 TraesCS2B01G320500 chr2A 97.109 1003 25 3 3169 4167 522074658 522075660 0.000000e+00 1688.0
13 TraesCS2B01G320500 chr2A 93.584 904 34 11 1 899 522071156 522072040 0.000000e+00 1327.0
14 TraesCS2B01G320500 chr2A 95.033 302 13 2 5969 6270 522077684 522077983 2.050000e-129 473.0
15 TraesCS2B01G320500 chr2A 95.455 220 10 0 5656 5875 522077466 522077685 1.000000e-92 351.0
16 TraesCS2B01G320500 chr2A 87.654 81 10 0 1253 1333 765762342 765762262 1.860000e-15 95.3
17 TraesCS2B01G320500 chr3A 82.967 364 51 6 974 1332 14277917 14278274 1.010000e-82 318.0
18 TraesCS2B01G320500 chr3A 95.930 172 7 0 4199 4370 641872782 641872953 4.790000e-71 279.0
19 TraesCS2B01G320500 chr1A 82.842 373 47 11 965 1332 540201453 540201813 1.010000e-82 318.0
20 TraesCS2B01G320500 chr4A 82.471 348 46 10 992 1332 9052559 9052220 2.210000e-74 291.0
21 TraesCS2B01G320500 chr5A 95.930 172 6 1 4202 4372 651496984 651496813 1.720000e-70 278.0
22 TraesCS2B01G320500 chr4D 95.376 173 8 0 4195 4367 13359911 13360083 6.190000e-70 276.0
23 TraesCS2B01G320500 chr4D 92.063 189 12 3 4196 4383 230473464 230473278 4.820000e-66 263.0
24 TraesCS2B01G320500 chr5D 95.376 173 7 1 4195 4367 274578180 274578009 2.230000e-69 274.0
25 TraesCS2B01G320500 chr3B 91.753 194 14 2 4175 4366 225179935 225180128 1.040000e-67 268.0
26 TraesCS2B01G320500 chr7D 91.192 193 14 2 4179 4371 153983825 153984014 6.240000e-65 259.0
27 TraesCS2B01G320500 chr7A 94.393 107 6 0 5865 5971 249279421 249279315 1.400000e-36 165.0
28 TraesCS2B01G320500 chr7A 93.636 110 4 3 5864 5971 692780325 692780433 1.810000e-35 161.0
29 TraesCS2B01G320500 chr7A 94.175 103 6 0 5874 5976 511927411 511927309 2.340000e-34 158.0
30 TraesCS2B01G320500 chr7A 92.661 109 6 2 5865 5971 628008467 628008575 8.420000e-34 156.0
31 TraesCS2B01G320500 chr7B 96.000 100 4 0 5874 5973 588874917 588875016 5.030000e-36 163.0
32 TraesCS2B01G320500 chr7B 93.519 108 7 0 5870 5977 589348419 589348312 1.810000e-35 161.0
33 TraesCS2B01G320500 chr6D 95.960 99 4 0 5874 5972 368755098 368755196 1.810000e-35 161.0
34 TraesCS2B01G320500 chr1B 94.231 104 6 0 5874 5977 606612826 606612929 6.510000e-35 159.0
35 TraesCS2B01G320500 chr4B 86.735 98 13 0 1729 1826 76818443 76818346 6.650000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G320500 chr2B 457108102 457114371 6269 False 11579.000000 11579 100.000000 1 6270 1 chr2B.!!$F1 6269
1 TraesCS2B01G320500 chr2D 386247676 386253704 6028 False 2278.750000 4602 95.575000 1 6270 4 chr2D.!!$F2 6269
2 TraesCS2B01G320500 chr2A 522071156 522077983 6827 False 1546.666667 3483 95.408167 1 6270 6 chr2A.!!$F1 6269

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
278 281 0.101759 TATACCGCCGAGTGAGCAAC 59.898 55.000 0.00 0.0 0.00 4.17 F
1146 1548 0.259938 GGGCTCCCCTGTGATTCATT 59.740 55.000 0.00 0.0 41.34 2.57 F
2064 2477 0.110056 CGGTGCACTGAACATGCTTC 60.110 55.000 21.59 0.0 43.77 3.86 F
2296 2729 0.389948 GTAGCGACCCACTTGTCCTG 60.390 60.000 0.00 0.0 31.35 3.86 F
2490 2931 0.678950 GGGCCAGCTATCTCTGACTC 59.321 60.000 4.39 0.0 36.19 3.36 F
3392 3835 1.210234 CATGAGGCAGACACACCCATA 59.790 52.381 0.00 0.0 0.00 2.74 F
4969 5798 0.621862 GGGAGATCAGGAACCACCCT 60.622 60.000 0.00 0.0 40.05 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1856 2265 0.178947 TTTGACCCCCGGAAAATGCT 60.179 50.0 0.73 0.0 0.00 3.79 R
2402 2835 0.037326 TCGCTGAATGGAGTGGTGTC 60.037 55.0 0.00 0.0 0.00 3.67 R
2908 3349 1.098050 CCTCCCCTCTTTTCGCATTG 58.902 55.0 0.00 0.0 0.00 2.82 R
3831 4276 1.149148 CTGATCTCCAGCGCATCATG 58.851 55.0 11.47 0.0 35.89 3.07 R
4196 4678 2.464796 TAGGAACGGAGGGAGCATTA 57.535 50.0 0.00 0.0 0.00 1.90 R
4987 5816 0.605589 CTTCCGTGAGCTCTCTTGGT 59.394 55.0 16.19 0.0 0.00 3.67 R
5949 6886 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.0 0.00 0.0 0.00 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 2.556287 GCAGCACGTACAAGCCAC 59.444 61.111 3.15 0.00 0.00 5.01
76 77 3.698289 TGGTCAGACGGTAGAAGAAGAT 58.302 45.455 0.00 0.00 0.00 2.40
261 264 1.651240 CGCCTGTTGCTGCTTGCTAT 61.651 55.000 0.00 0.00 43.37 2.97
262 265 1.382522 GCCTGTTGCTGCTTGCTATA 58.617 50.000 0.00 0.00 43.37 1.31
278 281 0.101759 TATACCGCCGAGTGAGCAAC 59.898 55.000 0.00 0.00 0.00 4.17
292 295 5.615289 AGTGAGCAACTCATTTCAAGTAGT 58.385 37.500 0.00 0.00 42.73 2.73
293 296 6.759272 AGTGAGCAACTCATTTCAAGTAGTA 58.241 36.000 0.00 0.00 42.73 1.82
294 297 7.217200 AGTGAGCAACTCATTTCAAGTAGTAA 58.783 34.615 0.00 0.00 42.73 2.24
295 298 7.171678 AGTGAGCAACTCATTTCAAGTAGTAAC 59.828 37.037 0.00 0.00 42.73 2.50
296 299 6.989759 TGAGCAACTCATTTCAAGTAGTAACA 59.010 34.615 0.00 0.00 35.39 2.41
297 300 7.171508 TGAGCAACTCATTTCAAGTAGTAACAG 59.828 37.037 0.00 0.00 35.39 3.16
347 350 0.747283 CAGATCTTGCCTGTCTGCCC 60.747 60.000 0.00 0.00 33.72 5.36
404 407 9.850198 ACTACTTACTCTCCTCGTAAAATAGAT 57.150 33.333 0.00 0.00 0.00 1.98
435 438 6.837471 ATTTACTTATTTTGCGGGTGGTAA 57.163 33.333 0.00 0.00 0.00 2.85
453 456 6.915843 GGTGGTAATTTATTATTTGACCGCAG 59.084 38.462 0.00 0.00 0.00 5.18
496 499 0.540597 AGCAGGGCTCCCTTCAAAAC 60.541 55.000 4.34 0.00 45.70 2.43
499 502 0.560688 AGGGCTCCCTTCAAAACCAA 59.439 50.000 0.54 0.00 45.70 3.67
500 503 1.062505 AGGGCTCCCTTCAAAACCAAA 60.063 47.619 0.54 0.00 45.70 3.28
501 504 1.765904 GGGCTCCCTTCAAAACCAAAA 59.234 47.619 0.00 0.00 0.00 2.44
502 505 2.224281 GGGCTCCCTTCAAAACCAAAAG 60.224 50.000 0.00 0.00 0.00 2.27
512 515 8.236586 CCCTTCAAAACCAAAAGAAAAGAAAAG 58.763 33.333 0.00 0.00 0.00 2.27
661 667 3.189910 GGTCCAAACGACAATTAGTTCCC 59.810 47.826 0.00 0.00 43.95 3.97
800 806 3.781307 CGAACCCATCCCAGCGGA 61.781 66.667 0.00 0.00 44.33 5.54
819 829 4.153296 GCGGAGAAGAAGAAAAGAAGAAGG 59.847 45.833 0.00 0.00 0.00 3.46
891 901 1.343884 CCTCCCTCCCACTTCATCTCT 60.344 57.143 0.00 0.00 0.00 3.10
1123 1498 3.636231 CACGGGGCCTCAAGGTGA 61.636 66.667 1.96 0.00 37.57 4.02
1124 1499 2.610859 ACGGGGCCTCAAGGTGAT 60.611 61.111 1.96 0.00 37.57 3.06
1146 1548 0.259938 GGGCTCCCCTGTGATTCATT 59.740 55.000 0.00 0.00 41.34 2.57
1173 1575 4.368543 GACGCCCCGGTCGAGTTT 62.369 66.667 18.41 0.00 0.00 2.66
1174 1576 3.871248 GACGCCCCGGTCGAGTTTT 62.871 63.158 18.41 0.00 0.00 2.43
1175 1577 3.116531 CGCCCCGGTCGAGTTTTC 61.117 66.667 7.49 0.00 0.00 2.29
1176 1578 2.745100 GCCCCGGTCGAGTTTTCC 60.745 66.667 0.00 0.00 0.00 3.13
1177 1579 3.066198 CCCCGGTCGAGTTTTCCT 58.934 61.111 0.00 0.00 0.00 3.36
1178 1580 1.373812 CCCCGGTCGAGTTTTCCTT 59.626 57.895 0.00 0.00 0.00 3.36
1179 1581 0.609662 CCCCGGTCGAGTTTTCCTTA 59.390 55.000 0.00 0.00 0.00 2.69
1180 1582 1.673923 CCCCGGTCGAGTTTTCCTTAC 60.674 57.143 0.00 0.00 0.00 2.34
1181 1583 1.673923 CCCGGTCGAGTTTTCCTTACC 60.674 57.143 0.00 0.00 0.00 2.85
1182 1584 1.673923 CCGGTCGAGTTTTCCTTACCC 60.674 57.143 0.00 0.00 0.00 3.69
1183 1585 1.673923 CGGTCGAGTTTTCCTTACCCC 60.674 57.143 0.00 0.00 0.00 4.95
1184 1586 1.673923 GGTCGAGTTTTCCTTACCCCG 60.674 57.143 0.00 0.00 0.00 5.73
1185 1587 1.001293 GTCGAGTTTTCCTTACCCCGT 59.999 52.381 0.00 0.00 0.00 5.28
1186 1588 1.273327 TCGAGTTTTCCTTACCCCGTC 59.727 52.381 0.00 0.00 0.00 4.79
1187 1589 1.718396 GAGTTTTCCTTACCCCGTCG 58.282 55.000 0.00 0.00 0.00 5.12
1188 1590 0.321034 AGTTTTCCTTACCCCGTCGC 60.321 55.000 0.00 0.00 0.00 5.19
1189 1591 1.374505 TTTTCCTTACCCCGTCGCG 60.375 57.895 0.00 0.00 0.00 5.87
1190 1592 1.814772 TTTTCCTTACCCCGTCGCGA 61.815 55.000 3.71 3.71 0.00 5.87
1196 1598 2.576643 TTACCCCGTCGCGATTTCCC 62.577 60.000 14.06 0.00 0.00 3.97
1215 1617 1.134220 CCCCCTGCTGCGAATTTAGTA 60.134 52.381 0.00 0.00 0.00 1.82
1223 1625 4.107622 GCTGCGAATTTAGTAACGGAGTA 58.892 43.478 12.31 0.00 45.00 2.59
1224 1626 4.743644 GCTGCGAATTTAGTAACGGAGTAT 59.256 41.667 12.31 0.00 45.00 2.12
1225 1627 5.107951 GCTGCGAATTTAGTAACGGAGTATC 60.108 44.000 12.31 0.00 45.00 2.24
1226 1628 6.140303 TGCGAATTTAGTAACGGAGTATCT 57.860 37.500 0.00 0.00 45.00 1.98
1631 2033 2.182791 CTCATCTGCGGCGTGAGT 59.817 61.111 14.85 0.00 35.72 3.41
1816 2218 3.130516 TCAAGATCTGCGACTTCGGTTAT 59.869 43.478 0.00 0.00 40.23 1.89
1876 2288 0.246360 GCATTTTCCGGGGGTCAAAG 59.754 55.000 0.00 0.00 0.00 2.77
1911 2323 3.273048 TTTGCGGCCGGAAAGATG 58.727 55.556 36.75 2.85 31.96 2.90
2064 2477 0.110056 CGGTGCACTGAACATGCTTC 60.110 55.000 21.59 0.00 43.77 3.86
2065 2478 1.242076 GGTGCACTGAACATGCTTCT 58.758 50.000 17.98 0.00 43.77 2.85
2066 2479 1.610522 GGTGCACTGAACATGCTTCTT 59.389 47.619 17.98 0.00 43.77 2.52
2188 2601 2.022129 CGACGGCAAGGTCAGTCAC 61.022 63.158 0.00 0.00 36.73 3.67
2191 2604 1.367471 CGGCAAGGTCAGTCACTCA 59.633 57.895 0.00 0.00 0.00 3.41
2296 2729 0.389948 GTAGCGACCCACTTGTCCTG 60.390 60.000 0.00 0.00 31.35 3.86
2402 2835 4.447342 GGCCTGGGTCCATGGGTG 62.447 72.222 13.02 0.00 0.00 4.61
2490 2931 0.678950 GGGCCAGCTATCTCTGACTC 59.321 60.000 4.39 0.00 36.19 3.36
2684 3125 1.222115 GACAGTCCTTGTCGTGGCAC 61.222 60.000 7.79 7.79 46.13 5.01
2741 3182 6.095720 AGTGGATTTTGTTGAAAAACTCGGTA 59.904 34.615 0.00 0.00 34.72 4.02
3050 3491 6.070824 CCTCTTGGTTTAATTTATTGTGGCCT 60.071 38.462 3.32 0.00 0.00 5.19
3134 3575 9.474313 AATTAGATACCCTATTTTTGCACTTGA 57.526 29.630 0.00 0.00 0.00 3.02
3135 3576 9.646522 ATTAGATACCCTATTTTTGCACTTGAT 57.353 29.630 0.00 0.00 0.00 2.57
3137 3578 8.451908 AGATACCCTATTTTTGCACTTGATAC 57.548 34.615 0.00 0.00 0.00 2.24
3138 3579 8.275040 AGATACCCTATTTTTGCACTTGATACT 58.725 33.333 0.00 0.00 0.00 2.12
3139 3580 9.555727 GATACCCTATTTTTGCACTTGATACTA 57.444 33.333 0.00 0.00 0.00 1.82
3140 3581 7.865706 ACCCTATTTTTGCACTTGATACTAG 57.134 36.000 0.00 0.00 0.00 2.57
3141 3582 6.828785 ACCCTATTTTTGCACTTGATACTAGG 59.171 38.462 0.00 0.00 0.00 3.02
3142 3583 7.054124 CCCTATTTTTGCACTTGATACTAGGA 58.946 38.462 0.00 0.00 0.00 2.94
3143 3584 7.556275 CCCTATTTTTGCACTTGATACTAGGAA 59.444 37.037 0.00 0.00 0.00 3.36
3144 3585 8.956426 CCTATTTTTGCACTTGATACTAGGAAA 58.044 33.333 0.00 0.00 0.00 3.13
3145 3586 9.994432 CTATTTTTGCACTTGATACTAGGAAAG 57.006 33.333 0.00 0.00 0.00 2.62
3146 3587 5.880054 TTTGCACTTGATACTAGGAAAGC 57.120 39.130 0.00 0.00 0.00 3.51
3147 3588 4.826274 TGCACTTGATACTAGGAAAGCT 57.174 40.909 0.00 0.00 0.00 3.74
3148 3589 5.165961 TGCACTTGATACTAGGAAAGCTT 57.834 39.130 0.00 0.00 0.00 3.74
3149 3590 5.560724 TGCACTTGATACTAGGAAAGCTTT 58.439 37.500 12.53 12.53 0.00 3.51
3150 3591 5.643777 TGCACTTGATACTAGGAAAGCTTTC 59.356 40.000 27.68 27.68 36.46 2.62
3160 3601 3.343380 GGAAAGCTTTCCGTTTCGAAA 57.657 42.857 35.95 6.47 46.36 3.46
3161 3602 3.697982 GGAAAGCTTTCCGTTTCGAAAA 58.302 40.909 35.95 0.00 46.36 2.29
3162 3603 4.106909 GGAAAGCTTTCCGTTTCGAAAAA 58.893 39.130 35.95 0.28 46.36 1.94
3345 3786 3.280295 TCAGACGGAGATAGGTCAGTTC 58.720 50.000 0.00 0.00 35.63 3.01
3357 3798 7.112122 AGATAGGTCAGTTCAATGCATGTTTA 58.888 34.615 0.00 0.00 0.00 2.01
3392 3835 1.210234 CATGAGGCAGACACACCCATA 59.790 52.381 0.00 0.00 0.00 2.74
3414 3857 2.229543 GGCACATCAGCTTGACAAATCA 59.770 45.455 0.00 0.00 34.17 2.57
3783 4228 2.027192 TCAGACTGGTTACATCTTGGCC 60.027 50.000 1.81 0.00 0.00 5.36
3831 4276 3.698029 TGCTTGTCAAAGAGAAACAGC 57.302 42.857 0.00 0.00 35.19 4.40
4118 4564 8.020861 TGCATCTAAATCATTTTGTTTGAAGC 57.979 30.769 0.00 0.00 0.00 3.86
4174 4656 9.590451 CCAAAATAACAACTGCATATCATTTCT 57.410 29.630 0.00 0.00 0.00 2.52
4196 4678 5.768164 TCTCGCAGGGAAAAGATTTAAGTTT 59.232 36.000 0.00 0.00 0.00 2.66
4200 4682 8.026607 TCGCAGGGAAAAGATTTAAGTTTAATG 58.973 33.333 0.00 0.00 0.00 1.90
4201 4683 7.201435 CGCAGGGAAAAGATTTAAGTTTAATGC 60.201 37.037 0.00 0.00 0.00 3.56
4202 4684 7.819415 GCAGGGAAAAGATTTAAGTTTAATGCT 59.181 33.333 0.00 0.00 0.00 3.79
4203 4685 9.358872 CAGGGAAAAGATTTAAGTTTAATGCTC 57.641 33.333 0.00 0.00 0.00 4.26
4204 4686 8.531982 AGGGAAAAGATTTAAGTTTAATGCTCC 58.468 33.333 0.00 0.00 0.00 4.70
4205 4687 7.764443 GGGAAAAGATTTAAGTTTAATGCTCCC 59.236 37.037 0.00 0.00 0.00 4.30
4206 4688 8.531982 GGAAAAGATTTAAGTTTAATGCTCCCT 58.468 33.333 0.00 0.00 0.00 4.20
4207 4689 9.574458 GAAAAGATTTAAGTTTAATGCTCCCTC 57.426 33.333 0.00 0.00 0.00 4.30
4208 4690 7.646548 AAGATTTAAGTTTAATGCTCCCTCC 57.353 36.000 0.00 0.00 0.00 4.30
4209 4691 5.823045 AGATTTAAGTTTAATGCTCCCTCCG 59.177 40.000 0.00 0.00 0.00 4.63
4210 4692 4.563140 TTAAGTTTAATGCTCCCTCCGT 57.437 40.909 0.00 0.00 0.00 4.69
4211 4693 3.434940 AAGTTTAATGCTCCCTCCGTT 57.565 42.857 0.00 0.00 0.00 4.44
4212 4694 2.987232 AGTTTAATGCTCCCTCCGTTC 58.013 47.619 0.00 0.00 0.00 3.95
4213 4695 2.014857 GTTTAATGCTCCCTCCGTTCC 58.985 52.381 0.00 0.00 0.00 3.62
4214 4696 1.580059 TTAATGCTCCCTCCGTTCCT 58.420 50.000 0.00 0.00 0.00 3.36
4215 4697 2.464796 TAATGCTCCCTCCGTTCCTA 57.535 50.000 0.00 0.00 0.00 2.94
4216 4698 1.580059 AATGCTCCCTCCGTTCCTAA 58.420 50.000 0.00 0.00 0.00 2.69
4217 4699 1.580059 ATGCTCCCTCCGTTCCTAAA 58.420 50.000 0.00 0.00 0.00 1.85
4218 4700 1.580059 TGCTCCCTCCGTTCCTAAAT 58.420 50.000 0.00 0.00 0.00 1.40
4219 4701 2.754465 TGCTCCCTCCGTTCCTAAATA 58.246 47.619 0.00 0.00 0.00 1.40
4220 4702 3.314693 TGCTCCCTCCGTTCCTAAATAT 58.685 45.455 0.00 0.00 0.00 1.28
4221 4703 3.714798 TGCTCCCTCCGTTCCTAAATATT 59.285 43.478 0.00 0.00 0.00 1.28
4222 4704 4.165372 TGCTCCCTCCGTTCCTAAATATTT 59.835 41.667 5.89 5.89 0.00 1.40
4223 4705 4.515567 GCTCCCTCCGTTCCTAAATATTTG 59.484 45.833 11.05 1.40 0.00 2.32
4224 4706 5.681639 CTCCCTCCGTTCCTAAATATTTGT 58.318 41.667 11.05 0.00 0.00 2.83
4225 4707 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
4226 4708 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
4227 4709 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
4228 4710 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
4229 4711 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
4230 4712 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
4231 4713 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
4232 4714 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
4233 4715 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
4246 4728 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
4247 4729 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
4248 4730 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
4249 4731 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
4250 4732 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
4251 4733 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
4252 4734 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
4253 4735 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
4254 4736 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
4256 4738 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
4257 4739 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
4258 4740 7.375834 AGATTTCAACAAGTGACTACATACGA 58.624 34.615 0.00 0.00 35.39 3.43
4259 4741 7.870954 AGATTTCAACAAGTGACTACATACGAA 59.129 33.333 0.00 0.00 35.39 3.85
4260 4742 7.402811 TTTCAACAAGTGACTACATACGAAG 57.597 36.000 0.00 0.00 35.39 3.79
4261 4743 4.921515 TCAACAAGTGACTACATACGAAGC 59.078 41.667 0.00 0.00 0.00 3.86
4262 4744 4.514781 ACAAGTGACTACATACGAAGCA 57.485 40.909 0.00 0.00 0.00 3.91
4263 4745 4.878439 ACAAGTGACTACATACGAAGCAA 58.122 39.130 0.00 0.00 0.00 3.91
4264 4746 5.294356 ACAAGTGACTACATACGAAGCAAA 58.706 37.500 0.00 0.00 0.00 3.68
4265 4747 5.756347 ACAAGTGACTACATACGAAGCAAAA 59.244 36.000 0.00 0.00 0.00 2.44
4266 4748 6.426937 ACAAGTGACTACATACGAAGCAAAAT 59.573 34.615 0.00 0.00 0.00 1.82
4267 4749 6.408858 AGTGACTACATACGAAGCAAAATG 57.591 37.500 0.00 0.00 0.00 2.32
4268 4750 5.351465 AGTGACTACATACGAAGCAAAATGG 59.649 40.000 0.00 0.00 0.00 3.16
4269 4751 5.350365 GTGACTACATACGAAGCAAAATGGA 59.650 40.000 0.00 0.00 0.00 3.41
4270 4752 6.037172 GTGACTACATACGAAGCAAAATGGAT 59.963 38.462 0.00 0.00 0.00 3.41
4271 4753 6.037062 TGACTACATACGAAGCAAAATGGATG 59.963 38.462 0.00 0.00 0.00 3.51
4272 4754 6.112734 ACTACATACGAAGCAAAATGGATGA 58.887 36.000 0.00 0.00 0.00 2.92
4273 4755 5.895636 ACATACGAAGCAAAATGGATGAA 57.104 34.783 0.00 0.00 0.00 2.57
4274 4756 6.455360 ACATACGAAGCAAAATGGATGAAT 57.545 33.333 0.00 0.00 0.00 2.57
4275 4757 6.267817 ACATACGAAGCAAAATGGATGAATG 58.732 36.000 0.00 0.00 0.00 2.67
4276 4758 4.789012 ACGAAGCAAAATGGATGAATGT 57.211 36.364 0.00 0.00 0.00 2.71
4277 4759 5.895636 ACGAAGCAAAATGGATGAATGTA 57.104 34.783 0.00 0.00 0.00 2.29
4278 4760 5.640732 ACGAAGCAAAATGGATGAATGTAC 58.359 37.500 0.00 0.00 0.00 2.90
4279 4761 5.182950 ACGAAGCAAAATGGATGAATGTACA 59.817 36.000 0.00 0.00 0.00 2.90
4280 4762 5.512788 CGAAGCAAAATGGATGAATGTACAC 59.487 40.000 0.00 0.00 0.00 2.90
4281 4763 6.594788 AAGCAAAATGGATGAATGTACACT 57.405 33.333 0.00 0.00 0.00 3.55
4282 4764 6.199937 AGCAAAATGGATGAATGTACACTC 57.800 37.500 0.00 0.00 0.00 3.51
4283 4765 5.948162 AGCAAAATGGATGAATGTACACTCT 59.052 36.000 5.83 0.00 0.00 3.24
4284 4766 7.112122 AGCAAAATGGATGAATGTACACTCTA 58.888 34.615 5.83 0.00 0.00 2.43
4285 4767 7.611467 AGCAAAATGGATGAATGTACACTCTAA 59.389 33.333 5.83 0.00 0.00 2.10
4286 4768 8.243426 GCAAAATGGATGAATGTACACTCTAAA 58.757 33.333 5.83 0.00 0.00 1.85
4312 4794 9.967346 AATATGTCTATATACATCCGTATGTGC 57.033 33.333 3.56 0.00 45.99 4.57
4313 4795 7.646548 ATGTCTATATACATCCGTATGTGCT 57.353 36.000 3.56 0.00 45.99 4.40
4314 4796 8.747538 ATGTCTATATACATCCGTATGTGCTA 57.252 34.615 3.56 0.00 45.99 3.49
4315 4797 8.209917 TGTCTATATACATCCGTATGTGCTAG 57.790 38.462 3.56 2.72 45.99 3.42
4316 4798 7.827729 TGTCTATATACATCCGTATGTGCTAGT 59.172 37.037 3.56 0.00 45.99 2.57
4317 4799 8.336806 GTCTATATACATCCGTATGTGCTAGTC 58.663 40.741 3.56 0.00 45.99 2.59
4318 4800 4.785511 ATACATCCGTATGTGCTAGTCC 57.214 45.455 3.56 0.00 45.99 3.85
4319 4801 2.384828 ACATCCGTATGTGCTAGTCCA 58.615 47.619 0.00 0.00 44.79 4.02
4320 4802 2.965831 ACATCCGTATGTGCTAGTCCAT 59.034 45.455 0.00 0.00 44.79 3.41
4321 4803 3.388024 ACATCCGTATGTGCTAGTCCATT 59.612 43.478 0.00 0.00 44.79 3.16
4322 4804 4.141711 ACATCCGTATGTGCTAGTCCATTT 60.142 41.667 0.00 0.00 44.79 2.32
4323 4805 3.792401 TCCGTATGTGCTAGTCCATTTG 58.208 45.455 2.28 0.00 0.00 2.32
4324 4806 3.449377 TCCGTATGTGCTAGTCCATTTGA 59.551 43.478 2.28 0.00 0.00 2.69
4325 4807 4.081365 TCCGTATGTGCTAGTCCATTTGAA 60.081 41.667 2.28 0.00 0.00 2.69
4326 4808 4.634004 CCGTATGTGCTAGTCCATTTGAAA 59.366 41.667 2.28 0.00 0.00 2.69
4327 4809 5.296780 CCGTATGTGCTAGTCCATTTGAAAT 59.703 40.000 2.28 0.00 0.00 2.17
4328 4810 6.422223 CGTATGTGCTAGTCCATTTGAAATC 58.578 40.000 2.28 0.00 0.00 2.17
4329 4811 6.258727 CGTATGTGCTAGTCCATTTGAAATCT 59.741 38.462 2.28 0.00 0.00 2.40
4330 4812 6.690194 ATGTGCTAGTCCATTTGAAATCTC 57.310 37.500 0.00 0.00 0.00 2.75
4331 4813 5.809001 TGTGCTAGTCCATTTGAAATCTCT 58.191 37.500 0.00 0.00 0.00 3.10
4332 4814 6.946340 TGTGCTAGTCCATTTGAAATCTCTA 58.054 36.000 0.00 0.00 0.00 2.43
4333 4815 7.394016 TGTGCTAGTCCATTTGAAATCTCTAA 58.606 34.615 0.00 0.00 0.00 2.10
4334 4816 7.882791 TGTGCTAGTCCATTTGAAATCTCTAAA 59.117 33.333 0.00 0.00 0.00 1.85
4335 4817 8.730680 GTGCTAGTCCATTTGAAATCTCTAAAA 58.269 33.333 0.00 0.00 0.00 1.52
4336 4818 9.295825 TGCTAGTCCATTTGAAATCTCTAAAAA 57.704 29.630 0.00 0.00 0.00 1.94
4337 4819 9.780413 GCTAGTCCATTTGAAATCTCTAAAAAG 57.220 33.333 0.00 0.00 0.00 2.27
4340 4822 9.354673 AGTCCATTTGAAATCTCTAAAAAGACA 57.645 29.630 0.00 0.00 0.00 3.41
4341 4823 9.965824 GTCCATTTGAAATCTCTAAAAAGACAA 57.034 29.630 0.00 0.00 0.00 3.18
4359 4841 8.581253 AAAGACAAATATTTAGGAACTGAGGG 57.419 34.615 0.00 0.00 41.52 4.30
4360 4842 7.510675 AGACAAATATTTAGGAACTGAGGGA 57.489 36.000 0.00 0.00 41.52 4.20
4361 4843 7.569240 AGACAAATATTTAGGAACTGAGGGAG 58.431 38.462 0.00 0.00 41.52 4.30
4362 4844 7.182930 AGACAAATATTTAGGAACTGAGGGAGT 59.817 37.037 0.00 0.00 41.52 3.85
4377 4859 6.489022 ACTGAGGGAGTACAATTTTACAAACC 59.511 38.462 4.66 3.62 30.86 3.27
4428 5251 4.743151 TGAAGCTTTATGTACTATTCCGCG 59.257 41.667 0.00 0.00 0.00 6.46
4437 5260 8.821147 TTATGTACTATTCCGCGTTTATGATT 57.179 30.769 4.92 0.00 0.00 2.57
4794 5623 8.215050 TCAATCCAATACAAAATACCGGAGTAT 58.785 33.333 9.46 3.64 41.09 2.12
4882 5711 4.324267 ACTTTCCGGATTAAACTCAGGTG 58.676 43.478 4.15 0.00 32.89 4.00
4969 5798 0.621862 GGGAGATCAGGAACCACCCT 60.622 60.000 0.00 0.00 40.05 4.34
5206 6035 0.898789 AAGCGGAGGAGGAAGACGAA 60.899 55.000 0.00 0.00 0.00 3.85
5374 6205 7.169982 TGTTCTCGAGTTTTTCTCTTCATTCTC 59.830 37.037 13.13 0.00 40.75 2.87
5382 6213 2.017782 TCTCTTCATTCTCGTCTCCGG 58.982 52.381 0.00 0.00 33.95 5.14
5512 6343 4.261322 GCATGTTCTTGCACTTCTCTTTCA 60.261 41.667 0.00 0.00 42.31 2.69
5516 6347 5.008019 TGTTCTTGCACTTCTCTTTCATGTC 59.992 40.000 0.00 0.00 0.00 3.06
5525 6356 6.654161 CACTTCTCTTTCATGTCCTGAAGATT 59.346 38.462 17.67 2.66 44.48 2.40
5539 6370 2.837591 TGAAGATTACAGCTGCACCCTA 59.162 45.455 15.27 0.00 0.00 3.53
5542 6373 2.840651 AGATTACAGCTGCACCCTAAGT 59.159 45.455 15.27 0.00 0.00 2.24
5547 6378 2.105821 ACAGCTGCACCCTAAGTTGTTA 59.894 45.455 15.27 0.00 34.64 2.41
5577 6408 3.139077 GGTCTATTAAATCGGTGCTGGG 58.861 50.000 0.00 0.00 0.00 4.45
5585 6416 2.799126 ATCGGTGCTGGGACAATTAA 57.201 45.000 0.00 0.00 38.70 1.40
5586 6417 2.570415 TCGGTGCTGGGACAATTAAA 57.430 45.000 0.00 0.00 38.70 1.52
5588 6419 2.554893 TCGGTGCTGGGACAATTAAAAC 59.445 45.455 0.00 0.00 38.70 2.43
5589 6420 2.294791 CGGTGCTGGGACAATTAAAACA 59.705 45.455 0.00 0.00 38.70 2.83
5590 6421 3.056891 CGGTGCTGGGACAATTAAAACAT 60.057 43.478 0.00 0.00 38.70 2.71
5591 6422 4.156922 CGGTGCTGGGACAATTAAAACATA 59.843 41.667 0.00 0.00 38.70 2.29
5592 6423 5.336055 CGGTGCTGGGACAATTAAAACATAA 60.336 40.000 0.00 0.00 38.70 1.90
5593 6424 6.627065 CGGTGCTGGGACAATTAAAACATAAT 60.627 38.462 0.00 0.00 38.70 1.28
5596 6442 7.816995 GTGCTGGGACAATTAAAACATAATTGA 59.183 33.333 21.40 4.67 43.76 2.57
5598 6444 8.034804 GCTGGGACAATTAAAACATAATTGACT 58.965 33.333 21.40 6.04 43.76 3.41
5617 6463 2.158623 ACTGCTCCTTGTTGATGTCCAA 60.159 45.455 0.00 0.00 0.00 3.53
5621 6467 4.263462 TGCTCCTTGTTGATGTCCAAGTAT 60.263 41.667 0.00 0.00 37.05 2.12
5622 6468 4.333926 GCTCCTTGTTGATGTCCAAGTATC 59.666 45.833 0.00 0.00 37.05 2.24
5623 6469 4.843728 TCCTTGTTGATGTCCAAGTATCC 58.156 43.478 0.00 0.00 37.05 2.59
5624 6470 4.288366 TCCTTGTTGATGTCCAAGTATCCA 59.712 41.667 0.00 0.00 37.05 3.41
5625 6471 5.009631 CCTTGTTGATGTCCAAGTATCCAA 58.990 41.667 0.00 0.00 37.05 3.53
5637 6557 7.453752 TGTCCAAGTATCCAAGTACTACTTCTT 59.546 37.037 5.22 0.00 36.03 2.52
5699 6629 5.252969 TGTCTGCAGATATTTCCAAATGC 57.747 39.130 21.47 2.27 0.00 3.56
5770 6700 1.327292 GCGGTTTTGCGATTGTGACG 61.327 55.000 0.00 0.00 0.00 4.35
5806 6743 8.833231 TTTCAGAAAGAAAGAAGTACATCGAT 57.167 30.769 0.00 0.00 41.17 3.59
5807 6744 8.467402 TTCAGAAAGAAAGAAGTACATCGATC 57.533 34.615 0.00 0.00 32.05 3.69
5808 6745 7.602753 TCAGAAAGAAAGAAGTACATCGATCA 58.397 34.615 0.00 0.00 0.00 2.92
5827 6764 6.535150 TCGATCAAGAACAGATATCAACAACC 59.465 38.462 5.32 0.00 0.00 3.77
5829 6766 7.465111 CGATCAAGAACAGATATCAACAACCAG 60.465 40.741 5.32 0.00 0.00 4.00
5843 6780 4.460948 ACAACCAGATGAAAATGATGCC 57.539 40.909 0.00 0.00 0.00 4.40
5858 6795 7.633193 AAATGATGCCGTTATTAAACCACTA 57.367 32.000 0.00 0.00 31.46 2.74
5861 6798 7.254227 TGATGCCGTTATTAAACCACTAATC 57.746 36.000 0.00 0.00 31.46 1.75
5868 6805 9.849166 CCGTTATTAAACCACTAATCATTTTGT 57.151 29.630 0.00 0.00 31.46 2.83
5883 6820 7.611213 ATCATTTTGTTAACTACTTCCTCCG 57.389 36.000 7.22 0.00 0.00 4.63
5884 6821 6.527423 TCATTTTGTTAACTACTTCCTCCGT 58.473 36.000 7.22 0.00 0.00 4.69
5885 6822 6.647895 TCATTTTGTTAACTACTTCCTCCGTC 59.352 38.462 7.22 0.00 0.00 4.79
5886 6823 4.525912 TTGTTAACTACTTCCTCCGTCC 57.474 45.455 7.22 0.00 0.00 4.79
5887 6824 2.827921 TGTTAACTACTTCCTCCGTCCC 59.172 50.000 7.22 0.00 0.00 4.46
5888 6825 2.827921 GTTAACTACTTCCTCCGTCCCA 59.172 50.000 0.00 0.00 0.00 4.37
5889 6826 2.019807 AACTACTTCCTCCGTCCCAA 57.980 50.000 0.00 0.00 0.00 4.12
5890 6827 2.019807 ACTACTTCCTCCGTCCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
5891 6828 2.332117 ACTACTTCCTCCGTCCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
5892 6829 2.910977 ACTACTTCCTCCGTCCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
5893 6830 4.098894 ACTACTTCCTCCGTCCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
5894 6831 4.533311 ACTACTTCCTCCGTCCCAAAATAA 59.467 41.667 0.00 0.00 0.00 1.40
5895 6832 3.682696 ACTTCCTCCGTCCCAAAATAAC 58.317 45.455 0.00 0.00 0.00 1.89
5896 6833 3.329814 ACTTCCTCCGTCCCAAAATAACT 59.670 43.478 0.00 0.00 0.00 2.24
5897 6834 3.343941 TCCTCCGTCCCAAAATAACTG 57.656 47.619 0.00 0.00 0.00 3.16
5898 6835 2.640826 TCCTCCGTCCCAAAATAACTGT 59.359 45.455 0.00 0.00 0.00 3.55
5899 6836 3.007635 CCTCCGTCCCAAAATAACTGTC 58.992 50.000 0.00 0.00 0.00 3.51
5900 6837 3.307480 CCTCCGTCCCAAAATAACTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
5901 6838 3.933332 CTCCGTCCCAAAATAACTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
5902 6839 3.325425 TCCGTCCCAAAATAACTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
5903 6840 4.069304 CCGTCCCAAAATAACTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
5904 6841 4.154195 CCGTCCCAAAATAACTGTCTCAAG 59.846 45.833 0.00 0.00 0.00 3.02
5905 6842 4.378459 CGTCCCAAAATAACTGTCTCAAGC 60.378 45.833 0.00 0.00 0.00 4.01
5906 6843 4.762251 GTCCCAAAATAACTGTCTCAAGCT 59.238 41.667 0.00 0.00 0.00 3.74
5907 6844 5.241728 GTCCCAAAATAACTGTCTCAAGCTT 59.758 40.000 0.00 0.00 0.00 3.74
5908 6845 6.430000 GTCCCAAAATAACTGTCTCAAGCTTA 59.570 38.462 0.00 0.00 0.00 3.09
5909 6846 6.655003 TCCCAAAATAACTGTCTCAAGCTTAG 59.345 38.462 0.00 0.00 0.00 2.18
5910 6847 6.431234 CCCAAAATAACTGTCTCAAGCTTAGT 59.569 38.462 0.00 0.00 0.00 2.24
5911 6848 7.606456 CCCAAAATAACTGTCTCAAGCTTAGTA 59.394 37.037 0.00 0.00 0.00 1.82
5912 6849 8.443937 CCAAAATAACTGTCTCAAGCTTAGTAC 58.556 37.037 0.00 0.00 0.00 2.73
5913 6850 8.988934 CAAAATAACTGTCTCAAGCTTAGTACA 58.011 33.333 0.00 2.68 0.00 2.90
5914 6851 9.555727 AAAATAACTGTCTCAAGCTTAGTACAA 57.444 29.630 0.00 0.00 0.00 2.41
5915 6852 8.535690 AATAACTGTCTCAAGCTTAGTACAAC 57.464 34.615 0.00 0.00 0.00 3.32
5916 6853 5.793030 ACTGTCTCAAGCTTAGTACAACT 57.207 39.130 0.00 0.00 0.00 3.16
5917 6854 6.163135 ACTGTCTCAAGCTTAGTACAACTT 57.837 37.500 0.00 0.00 0.00 2.66
5918 6855 6.583562 ACTGTCTCAAGCTTAGTACAACTTT 58.416 36.000 0.00 0.00 0.00 2.66
5919 6856 6.480320 ACTGTCTCAAGCTTAGTACAACTTTG 59.520 38.462 0.00 0.00 0.00 2.77
5920 6857 6.346096 TGTCTCAAGCTTAGTACAACTTTGT 58.654 36.000 0.00 0.00 44.86 2.83
5921 6858 7.494211 TGTCTCAAGCTTAGTACAACTTTGTA 58.506 34.615 0.00 0.00 42.35 2.41
5944 6881 8.097078 GTACTAGAGTCAGTACAAAGTTGAGA 57.903 38.462 19.49 0.00 46.72 3.27
5945 6882 6.972722 ACTAGAGTCAGTACAAAGTTGAGAC 58.027 40.000 0.00 1.34 0.00 3.36
5946 6883 6.773685 ACTAGAGTCAGTACAAAGTTGAGACT 59.226 38.462 0.00 5.68 37.87 3.24
5947 6884 6.079424 AGAGTCAGTACAAAGTTGAGACTC 57.921 41.667 20.07 20.07 41.12 3.36
5948 6885 5.830991 AGAGTCAGTACAAAGTTGAGACTCT 59.169 40.000 22.23 22.23 43.11 3.24
5949 6886 6.322712 AGAGTCAGTACAAAGTTGAGACTCTT 59.677 38.462 22.23 14.27 44.04 2.85
5950 6887 7.502895 AGAGTCAGTACAAAGTTGAGACTCTTA 59.497 37.037 22.23 0.00 44.04 2.10
5951 6888 8.184304 AGTCAGTACAAAGTTGAGACTCTTAT 57.816 34.615 3.68 0.00 34.21 1.73
5952 6889 8.643324 AGTCAGTACAAAGTTGAGACTCTTATT 58.357 33.333 3.68 0.00 34.21 1.40
5953 6890 9.262358 GTCAGTACAAAGTTGAGACTCTTATTT 57.738 33.333 3.68 0.00 34.21 1.40
5954 6891 9.832445 TCAGTACAAAGTTGAGACTCTTATTTT 57.168 29.630 3.68 0.00 34.21 1.82
5955 6892 9.869844 CAGTACAAAGTTGAGACTCTTATTTTG 57.130 33.333 16.83 16.83 34.21 2.44
5956 6893 9.057089 AGTACAAAGTTGAGACTCTTATTTTGG 57.943 33.333 19.81 9.81 34.21 3.28
5957 6894 7.277174 ACAAAGTTGAGACTCTTATTTTGGG 57.723 36.000 19.81 6.55 34.21 4.12
5958 6895 7.060421 ACAAAGTTGAGACTCTTATTTTGGGA 58.940 34.615 19.81 0.00 34.21 4.37
5959 6896 7.013369 ACAAAGTTGAGACTCTTATTTTGGGAC 59.987 37.037 19.81 2.53 34.21 4.46
5960 6897 5.238583 AGTTGAGACTCTTATTTTGGGACG 58.761 41.667 3.68 0.00 0.00 4.79
5961 6898 4.202245 TGAGACTCTTATTTTGGGACGG 57.798 45.455 3.68 0.00 0.00 4.79
5962 6899 3.835978 TGAGACTCTTATTTTGGGACGGA 59.164 43.478 3.68 0.00 0.00 4.69
5963 6900 4.081642 TGAGACTCTTATTTTGGGACGGAG 60.082 45.833 3.68 0.00 0.00 4.63
5964 6901 3.197983 AGACTCTTATTTTGGGACGGAGG 59.802 47.826 0.00 0.00 0.00 4.30
5965 6902 2.238898 ACTCTTATTTTGGGACGGAGGG 59.761 50.000 0.00 0.00 0.00 4.30
5966 6903 2.504175 CTCTTATTTTGGGACGGAGGGA 59.496 50.000 0.00 0.00 0.00 4.20
5967 6904 2.504175 TCTTATTTTGGGACGGAGGGAG 59.496 50.000 0.00 0.00 0.00 4.30
6058 6995 8.344831 CAAATCATCGCAAACAATCTAATCCTA 58.655 33.333 0.00 0.00 0.00 2.94
6159 7096 6.530120 TCTCCAGCGGAAATAATAAGCAATA 58.470 36.000 0.00 0.00 0.00 1.90
6179 7116 2.704572 ACAAGCAAGAAAGATCCGAGG 58.295 47.619 0.00 0.00 0.00 4.63
6232 7169 2.016165 GCCTTGCTGCGGAAAAACG 61.016 57.895 0.00 0.00 0.00 3.60
6233 7170 1.358759 CCTTGCTGCGGAAAAACGT 59.641 52.632 0.00 0.00 35.98 3.99
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 90 0.036732 AGAAAAGGATCTGCGGCACA 59.963 50.000 0.00 0.00 0.00 4.57
261 264 2.209064 GAGTTGCTCACTCGGCGGTA 62.209 60.000 7.21 0.00 42.82 4.02
262 265 3.575351 GAGTTGCTCACTCGGCGGT 62.575 63.158 7.21 0.19 42.82 5.68
278 281 8.491152 CAACTGTCTGTTACTACTTGAAATGAG 58.509 37.037 0.00 0.00 37.07 2.90
287 290 6.269307 ACAATACCCAACTGTCTGTTACTACT 59.731 38.462 0.00 0.00 37.07 2.57
288 291 6.367969 CACAATACCCAACTGTCTGTTACTAC 59.632 42.308 0.00 0.00 37.07 2.73
289 292 6.042322 ACACAATACCCAACTGTCTGTTACTA 59.958 38.462 0.00 0.00 37.07 1.82
290 293 5.163237 ACACAATACCCAACTGTCTGTTACT 60.163 40.000 0.00 0.00 37.07 2.24
291 294 5.061179 ACACAATACCCAACTGTCTGTTAC 58.939 41.667 0.00 0.00 37.07 2.50
292 295 5.298989 ACACAATACCCAACTGTCTGTTA 57.701 39.130 0.00 0.00 37.07 2.41
293 296 4.164843 ACACAATACCCAACTGTCTGTT 57.835 40.909 0.00 0.00 39.92 3.16
294 297 3.857157 ACACAATACCCAACTGTCTGT 57.143 42.857 0.00 0.00 0.00 3.41
295 298 3.502211 GGAACACAATACCCAACTGTCTG 59.498 47.826 0.00 0.00 0.00 3.51
296 299 3.751518 GGAACACAATACCCAACTGTCT 58.248 45.455 0.00 0.00 0.00 3.41
297 300 2.482721 CGGAACACAATACCCAACTGTC 59.517 50.000 0.00 0.00 0.00 3.51
347 350 0.517316 GTCAAAGCACTGGCCTTACG 59.483 55.000 3.32 0.00 42.56 3.18
435 438 3.630312 ACGGCTGCGGTCAAATAATAAAT 59.370 39.130 7.06 0.00 0.00 1.40
453 456 3.555518 CTTTTGAAGCACTAGAAACGGC 58.444 45.455 0.00 0.00 0.00 5.68
496 499 9.494479 GCTTGATTTTCTTTTCTTTTCTTTTGG 57.506 29.630 0.00 0.00 0.00 3.28
501 504 8.886719 CCTTTGCTTGATTTTCTTTTCTTTTCT 58.113 29.630 0.00 0.00 0.00 2.52
502 505 7.641411 GCCTTTGCTTGATTTTCTTTTCTTTTC 59.359 33.333 0.00 0.00 33.53 2.29
512 515 2.476241 CCGTTGCCTTTGCTTGATTTTC 59.524 45.455 0.00 0.00 38.71 2.29
661 667 4.161333 GTGCTCATGATTTGTTTTCTCCG 58.839 43.478 0.00 0.00 0.00 4.63
770 776 6.943718 TGGGATGGGTTCGATTAATTAATACC 59.056 38.462 15.87 15.87 0.00 2.73
771 777 7.361799 GCTGGGATGGGTTCGATTAATTAATAC 60.362 40.741 10.68 5.95 0.00 1.89
772 778 6.657541 GCTGGGATGGGTTCGATTAATTAATA 59.342 38.462 10.68 0.00 0.00 0.98
800 806 6.186420 AGAGCCTTCTTCTTTTCTTCTTCT 57.814 37.500 0.00 0.00 0.00 2.85
819 829 3.904800 AGCTTAAAGGAGAAGGAGAGC 57.095 47.619 0.00 0.00 0.00 4.09
862 872 4.179599 GGAGGGAGGGAGGGGGAG 62.180 77.778 0.00 0.00 0.00 4.30
891 901 2.702751 TTTGGAAGCTTCGTCGCGGA 62.703 55.000 19.91 0.00 34.40 5.54
1065 1440 1.072965 AGCTCCTTGGTCTCCTTGTTG 59.927 52.381 0.00 0.00 0.00 3.33
1160 1562 0.609662 TAAGGAAAACTCGACCGGGG 59.390 55.000 6.32 0.00 0.00 5.73
1173 1575 1.606885 AATCGCGACGGGGTAAGGAA 61.607 55.000 12.93 0.00 0.00 3.36
1174 1576 1.606885 AAATCGCGACGGGGTAAGGA 61.607 55.000 12.93 0.00 0.00 3.36
1175 1577 1.149964 GAAATCGCGACGGGGTAAGG 61.150 60.000 12.93 0.00 0.00 2.69
1176 1578 1.149964 GGAAATCGCGACGGGGTAAG 61.150 60.000 12.93 0.00 0.00 2.34
1177 1579 1.153588 GGAAATCGCGACGGGGTAA 60.154 57.895 12.93 0.00 0.00 2.85
1178 1580 2.495866 GGAAATCGCGACGGGGTA 59.504 61.111 12.93 0.00 0.00 3.69
1179 1581 4.462280 GGGAAATCGCGACGGGGT 62.462 66.667 12.93 0.99 0.00 4.95
1196 1598 2.325583 TACTAAATTCGCAGCAGGGG 57.674 50.000 0.00 0.00 0.00 4.79
1197 1599 2.030457 CGTTACTAAATTCGCAGCAGGG 59.970 50.000 0.00 0.00 0.00 4.45
1385 1787 9.535878 AAAGAATCAATCCGTTATACTCTTCTC 57.464 33.333 0.00 0.00 0.00 2.87
1541 1943 3.124921 CGGCGCCGAAAATGGACT 61.125 61.111 44.86 0.00 42.83 3.85
1653 2055 1.284297 GATTGCACCGGTTTGCTTGC 61.284 55.000 17.03 11.59 43.41 4.01
1714 2116 0.874390 TTTGCTGCAGATCAACGACC 59.126 50.000 20.43 0.00 0.00 4.79
1842 2250 7.438160 CCCGGAAAATGCTTCCTTTTATAATTC 59.562 37.037 0.73 0.00 36.45 2.17
1856 2265 0.178947 TTTGACCCCCGGAAAATGCT 60.179 50.000 0.73 0.00 0.00 3.79
1911 2323 1.124477 AGGGCGAGATGAATCCTCCC 61.124 60.000 0.00 4.71 33.12 4.30
2064 2477 4.100035 ACTGCAAAAGGAAGAAAAGGGAAG 59.900 41.667 0.00 0.00 0.00 3.46
2065 2478 4.030216 ACTGCAAAAGGAAGAAAAGGGAA 58.970 39.130 0.00 0.00 0.00 3.97
2066 2479 3.636764 GACTGCAAAAGGAAGAAAAGGGA 59.363 43.478 0.00 0.00 0.00 4.20
2188 2601 1.309499 AACGGCGGAGAGAGACTGAG 61.309 60.000 13.24 0.00 0.00 3.35
2191 2604 0.244178 GAAAACGGCGGAGAGAGACT 59.756 55.000 13.24 0.00 0.00 3.24
2387 2820 2.230653 TGTCACCCATGGACCCAGG 61.231 63.158 15.22 0.00 34.36 4.45
2402 2835 0.037326 TCGCTGAATGGAGTGGTGTC 60.037 55.000 0.00 0.00 0.00 3.67
2435 2868 0.824109 TAGACCCACGCCAGAATGAG 59.176 55.000 0.00 0.00 39.69 2.90
2490 2931 2.825086 GGACAAATTCCGAATCCACG 57.175 50.000 0.00 0.00 33.46 4.94
2741 3182 4.451900 TCTCTCACCTTTTCGCTTTTTCT 58.548 39.130 0.00 0.00 0.00 2.52
2908 3349 1.098050 CCTCCCCTCTTTTCGCATTG 58.902 55.000 0.00 0.00 0.00 2.82
3050 3491 7.236847 TCTCCAGGAAATCTAACTTTACTCCAA 59.763 37.037 0.00 0.00 26.22 3.53
3164 3605 6.516739 GCTCCAAGCTTTCCTAGTATTTTT 57.483 37.500 0.00 0.00 38.45 1.94
3357 3798 2.366533 CTCATGGAGCTTGCTTGTCAT 58.633 47.619 0.00 0.00 0.00 3.06
3392 3835 1.985473 TTTGTCAAGCTGATGTGCCT 58.015 45.000 0.00 0.00 0.00 4.75
3414 3857 4.177783 GACACGTCCAACAAAAACCAAAT 58.822 39.130 0.00 0.00 0.00 2.32
3528 3971 7.485418 TTAGCTAATCAGTTCGTTTCACAAA 57.515 32.000 0.86 0.00 0.00 2.83
3783 4228 2.095059 ACTAATTTTGCAGCGCTGGAAG 60.095 45.455 36.91 29.02 41.77 3.46
3831 4276 1.149148 CTGATCTCCAGCGCATCATG 58.851 55.000 11.47 0.00 35.89 3.07
4174 4656 7.513371 TTAAACTTAAATCTTTTCCCTGCGA 57.487 32.000 0.00 0.00 0.00 5.10
4196 4678 2.464796 TAGGAACGGAGGGAGCATTA 57.535 50.000 0.00 0.00 0.00 1.90
4200 4682 4.353383 AATATTTAGGAACGGAGGGAGC 57.647 45.455 0.00 0.00 0.00 4.70
4201 4683 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
4202 4684 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
4203 4685 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
4204 4686 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
4205 4687 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
4206 4688 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
4207 4689 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
4220 4702 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
4221 4703 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
4222 4704 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
4223 4705 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
4224 4706 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
4225 4707 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
4226 4708 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
4227 4709 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
4228 4710 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
4229 4711 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
4230 4712 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
4231 4713 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
4232 4714 7.541091 TCGTATGTAGTCACTTGTTGAAATCTC 59.459 37.037 0.00 0.00 35.39 2.75
4233 4715 7.375834 TCGTATGTAGTCACTTGTTGAAATCT 58.624 34.615 0.00 0.00 35.39 2.40
4234 4716 7.576750 TCGTATGTAGTCACTTGTTGAAATC 57.423 36.000 0.00 0.00 35.39 2.17
4235 4717 7.360101 GCTTCGTATGTAGTCACTTGTTGAAAT 60.360 37.037 0.00 0.00 35.39 2.17
4236 4718 6.073980 GCTTCGTATGTAGTCACTTGTTGAAA 60.074 38.462 0.00 0.00 35.39 2.69
4237 4719 5.404366 GCTTCGTATGTAGTCACTTGTTGAA 59.596 40.000 0.00 0.00 35.39 2.69
4238 4720 4.921515 GCTTCGTATGTAGTCACTTGTTGA 59.078 41.667 0.00 0.00 0.00 3.18
4239 4721 4.684242 TGCTTCGTATGTAGTCACTTGTTG 59.316 41.667 0.00 0.00 0.00 3.33
4240 4722 4.878439 TGCTTCGTATGTAGTCACTTGTT 58.122 39.130 0.00 0.00 0.00 2.83
4241 4723 4.514781 TGCTTCGTATGTAGTCACTTGT 57.485 40.909 0.00 0.00 0.00 3.16
4242 4724 5.839262 TTTGCTTCGTATGTAGTCACTTG 57.161 39.130 0.00 0.00 0.00 3.16
4243 4725 6.128282 CCATTTTGCTTCGTATGTAGTCACTT 60.128 38.462 0.00 0.00 0.00 3.16
4244 4726 5.351465 CCATTTTGCTTCGTATGTAGTCACT 59.649 40.000 0.00 0.00 0.00 3.41
4245 4727 5.350365 TCCATTTTGCTTCGTATGTAGTCAC 59.650 40.000 0.00 0.00 0.00 3.67
4246 4728 5.483811 TCCATTTTGCTTCGTATGTAGTCA 58.516 37.500 0.00 0.00 0.00 3.41
4247 4729 6.257849 TCATCCATTTTGCTTCGTATGTAGTC 59.742 38.462 0.00 0.00 0.00 2.59
4248 4730 6.112734 TCATCCATTTTGCTTCGTATGTAGT 58.887 36.000 0.00 0.00 0.00 2.73
4249 4731 6.603237 TCATCCATTTTGCTTCGTATGTAG 57.397 37.500 0.00 0.00 0.00 2.74
4250 4732 6.993786 TTCATCCATTTTGCTTCGTATGTA 57.006 33.333 0.00 0.00 0.00 2.29
4251 4733 5.895636 TTCATCCATTTTGCTTCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
4252 4734 6.267817 ACATTCATCCATTTTGCTTCGTATG 58.732 36.000 0.00 0.00 0.00 2.39
4253 4735 6.455360 ACATTCATCCATTTTGCTTCGTAT 57.545 33.333 0.00 0.00 0.00 3.06
4254 4736 5.895636 ACATTCATCCATTTTGCTTCGTA 57.104 34.783 0.00 0.00 0.00 3.43
4255 4737 4.789012 ACATTCATCCATTTTGCTTCGT 57.211 36.364 0.00 0.00 0.00 3.85
4256 4738 5.512788 GTGTACATTCATCCATTTTGCTTCG 59.487 40.000 0.00 0.00 0.00 3.79
4257 4739 6.624423 AGTGTACATTCATCCATTTTGCTTC 58.376 36.000 0.00 0.00 0.00 3.86
4258 4740 6.435277 AGAGTGTACATTCATCCATTTTGCTT 59.565 34.615 19.24 0.00 0.00 3.91
4259 4741 5.948162 AGAGTGTACATTCATCCATTTTGCT 59.052 36.000 19.24 0.00 0.00 3.91
4260 4742 6.199937 AGAGTGTACATTCATCCATTTTGC 57.800 37.500 19.24 0.00 0.00 3.68
4286 4768 9.967346 GCACATACGGATGTATATAGACATATT 57.033 33.333 14.23 3.62 44.82 1.28
4287 4769 9.355916 AGCACATACGGATGTATATAGACATAT 57.644 33.333 14.23 5.08 44.82 1.78
4288 4770 8.747538 AGCACATACGGATGTATATAGACATA 57.252 34.615 14.23 0.00 44.82 2.29
4289 4771 7.646548 AGCACATACGGATGTATATAGACAT 57.353 36.000 14.23 12.70 44.82 3.06
4290 4772 7.827729 ACTAGCACATACGGATGTATATAGACA 59.172 37.037 23.04 2.07 44.82 3.41
4291 4773 8.211116 ACTAGCACATACGGATGTATATAGAC 57.789 38.462 23.04 7.03 44.82 2.59
4292 4774 7.498239 GGACTAGCACATACGGATGTATATAGA 59.502 40.741 23.04 5.39 44.82 1.98
4293 4775 7.282450 TGGACTAGCACATACGGATGTATATAG 59.718 40.741 14.23 16.68 44.82 1.31
4294 4776 7.114095 TGGACTAGCACATACGGATGTATATA 58.886 38.462 14.23 5.82 44.82 0.86
4295 4777 5.949952 TGGACTAGCACATACGGATGTATAT 59.050 40.000 14.23 4.87 44.82 0.86
4296 4778 5.318630 TGGACTAGCACATACGGATGTATA 58.681 41.667 14.23 8.71 44.82 1.47
4297 4779 4.149598 TGGACTAGCACATACGGATGTAT 58.850 43.478 14.23 7.93 44.82 2.29
4298 4780 3.558033 TGGACTAGCACATACGGATGTA 58.442 45.455 14.23 0.00 44.82 2.29
4300 4782 3.667497 ATGGACTAGCACATACGGATG 57.333 47.619 5.94 5.94 39.16 3.51
4301 4783 4.100963 TCAAATGGACTAGCACATACGGAT 59.899 41.667 0.69 0.00 0.00 4.18
4302 4784 3.449377 TCAAATGGACTAGCACATACGGA 59.551 43.478 0.69 0.00 0.00 4.69
4303 4785 3.792401 TCAAATGGACTAGCACATACGG 58.208 45.455 0.69 0.00 0.00 4.02
4304 4786 5.794687 TTTCAAATGGACTAGCACATACG 57.205 39.130 0.69 0.00 0.00 3.06
4305 4787 7.497249 AGAGATTTCAAATGGACTAGCACATAC 59.503 37.037 0.00 0.00 0.00 2.39
4306 4788 7.568349 AGAGATTTCAAATGGACTAGCACATA 58.432 34.615 0.00 0.00 0.00 2.29
4307 4789 6.421485 AGAGATTTCAAATGGACTAGCACAT 58.579 36.000 0.00 0.00 0.00 3.21
4308 4790 5.809001 AGAGATTTCAAATGGACTAGCACA 58.191 37.500 0.00 0.00 0.00 4.57
4309 4791 7.849804 TTAGAGATTTCAAATGGACTAGCAC 57.150 36.000 0.00 0.00 0.00 4.40
4310 4792 8.862325 TTTTAGAGATTTCAAATGGACTAGCA 57.138 30.769 0.00 0.00 0.00 3.49
4311 4793 9.780413 CTTTTTAGAGATTTCAAATGGACTAGC 57.220 33.333 0.00 0.00 0.00 3.42
4314 4796 9.354673 TGTCTTTTTAGAGATTTCAAATGGACT 57.645 29.630 0.00 0.00 0.00 3.85
4315 4797 9.965824 TTGTCTTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
4333 4815 9.025041 CCCTCAGTTCCTAAATATTTGTCTTTT 57.975 33.333 11.05 0.00 0.00 2.27
4334 4816 8.390921 TCCCTCAGTTCCTAAATATTTGTCTTT 58.609 33.333 11.05 0.00 0.00 2.52
4335 4817 7.928873 TCCCTCAGTTCCTAAATATTTGTCTT 58.071 34.615 11.05 0.00 0.00 3.01
4336 4818 7.182930 ACTCCCTCAGTTCCTAAATATTTGTCT 59.817 37.037 11.05 0.00 26.56 3.41
4337 4819 7.339482 ACTCCCTCAGTTCCTAAATATTTGTC 58.661 38.462 11.05 0.00 26.56 3.18
4338 4820 7.272144 ACTCCCTCAGTTCCTAAATATTTGT 57.728 36.000 11.05 0.00 26.56 2.83
4339 4821 8.265055 TGTACTCCCTCAGTTCCTAAATATTTG 58.735 37.037 11.05 1.40 36.43 2.32
4340 4822 8.388656 TGTACTCCCTCAGTTCCTAAATATTT 57.611 34.615 5.89 5.89 36.43 1.40
4341 4823 7.989947 TGTACTCCCTCAGTTCCTAAATATT 57.010 36.000 0.00 0.00 36.43 1.28
4342 4824 7.989947 TTGTACTCCCTCAGTTCCTAAATAT 57.010 36.000 0.00 0.00 36.43 1.28
4343 4825 7.989947 ATTGTACTCCCTCAGTTCCTAAATA 57.010 36.000 0.00 0.00 36.43 1.40
4344 4826 6.893020 ATTGTACTCCCTCAGTTCCTAAAT 57.107 37.500 0.00 0.00 36.43 1.40
4345 4827 6.697641 AATTGTACTCCCTCAGTTCCTAAA 57.302 37.500 0.00 0.00 36.43 1.85
4346 4828 6.697641 AAATTGTACTCCCTCAGTTCCTAA 57.302 37.500 0.00 0.00 36.43 2.69
4347 4829 6.697641 AAAATTGTACTCCCTCAGTTCCTA 57.302 37.500 0.00 0.00 36.43 2.94
4348 4830 5.584551 AAAATTGTACTCCCTCAGTTCCT 57.415 39.130 0.00 0.00 36.43 3.36
4349 4831 6.235664 TGTAAAATTGTACTCCCTCAGTTCC 58.764 40.000 7.31 0.00 36.43 3.62
4350 4832 7.739498 TTGTAAAATTGTACTCCCTCAGTTC 57.261 36.000 7.31 0.00 36.43 3.01
4351 4833 7.013942 GGTTTGTAAAATTGTACTCCCTCAGTT 59.986 37.037 7.31 0.00 36.43 3.16
4352 4834 6.489022 GGTTTGTAAAATTGTACTCCCTCAGT 59.511 38.462 7.31 0.00 39.41 3.41
4353 4835 6.715264 AGGTTTGTAAAATTGTACTCCCTCAG 59.285 38.462 7.31 0.00 0.00 3.35
4354 4836 6.488683 CAGGTTTGTAAAATTGTACTCCCTCA 59.511 38.462 7.31 0.00 0.00 3.86
4355 4837 6.489022 ACAGGTTTGTAAAATTGTACTCCCTC 59.511 38.462 7.31 0.00 35.25 4.30
4356 4838 6.370453 ACAGGTTTGTAAAATTGTACTCCCT 58.630 36.000 7.31 6.52 35.25 4.20
4357 4839 6.644248 ACAGGTTTGTAAAATTGTACTCCC 57.356 37.500 7.31 4.55 35.25 4.30
4437 5260 9.521841 TGGAACATAACCAATTTAAGATGTACA 57.478 29.630 0.00 0.00 34.25 2.90
4715 5544 7.039714 GGACCAACCATAAGAAAGTTGAATTCT 60.040 37.037 7.05 0.00 42.76 2.40
4794 5623 1.548719 CAGTCTTGGGATACGTGGACA 59.451 52.381 0.00 0.00 33.33 4.02
4865 5694 2.093447 AGCTCACCTGAGTTTAATCCGG 60.093 50.000 0.00 0.00 43.85 5.14
4915 5744 6.018469 TCTCTGAAATGATGGTTGGGAAAAT 58.982 36.000 0.00 0.00 0.00 1.82
4987 5816 0.605589 CTTCCGTGAGCTCTCTTGGT 59.394 55.000 16.19 0.00 0.00 3.67
5206 6035 6.154192 TCAACTGCTTCTCATACTCATCTTCT 59.846 38.462 0.00 0.00 0.00 2.85
5251 6080 1.135915 AGCTAGCTGATGTGGAACTCG 59.864 52.381 18.57 0.00 38.04 4.18
5374 6205 1.284982 CTGTTGCAGAACCGGAGACG 61.285 60.000 9.46 0.00 43.82 4.18
5382 6213 6.067263 TGGTAATTTACACTGTTGCAGAAC 57.933 37.500 8.73 0.00 35.18 3.01
5512 6343 3.054875 TGCAGCTGTAATCTTCAGGACAT 60.055 43.478 16.64 0.00 33.98 3.06
5516 6347 2.012673 GGTGCAGCTGTAATCTTCAGG 58.987 52.381 16.64 0.00 33.98 3.86
5525 6356 1.697432 ACAACTTAGGGTGCAGCTGTA 59.303 47.619 16.64 8.31 0.00 2.74
5547 6378 8.784043 GCACCGATTTAATAGACCAGATTAATT 58.216 33.333 0.00 0.00 30.78 1.40
5562 6393 2.570415 TTGTCCCAGCACCGATTTAA 57.430 45.000 0.00 0.00 0.00 1.52
5570 6401 7.816995 TCAATTATGTTTTAATTGTCCCAGCAC 59.183 33.333 14.42 0.00 42.44 4.40
5577 6408 9.076596 GGAGCAGTCAATTATGTTTTAATTGTC 57.923 33.333 14.42 10.68 42.44 3.18
5585 6416 6.265196 TCAACAAGGAGCAGTCAATTATGTTT 59.735 34.615 0.00 0.00 0.00 2.83
5586 6417 5.769662 TCAACAAGGAGCAGTCAATTATGTT 59.230 36.000 0.00 0.00 0.00 2.71
5588 6419 5.885230 TCAACAAGGAGCAGTCAATTATG 57.115 39.130 0.00 0.00 0.00 1.90
5589 6420 5.948162 ACATCAACAAGGAGCAGTCAATTAT 59.052 36.000 0.00 0.00 0.00 1.28
5590 6421 5.316167 ACATCAACAAGGAGCAGTCAATTA 58.684 37.500 0.00 0.00 0.00 1.40
5591 6422 4.147321 ACATCAACAAGGAGCAGTCAATT 58.853 39.130 0.00 0.00 0.00 2.32
5592 6423 3.755378 GACATCAACAAGGAGCAGTCAAT 59.245 43.478 0.00 0.00 0.00 2.57
5593 6424 3.141398 GACATCAACAAGGAGCAGTCAA 58.859 45.455 0.00 0.00 0.00 3.18
5596 6442 1.421268 TGGACATCAACAAGGAGCAGT 59.579 47.619 0.00 0.00 0.00 4.40
5598 6444 2.158623 ACTTGGACATCAACAAGGAGCA 60.159 45.455 8.97 0.00 46.29 4.26
5617 6463 9.939424 AGGATTAAGAAGTAGTACTTGGATACT 57.061 33.333 20.21 10.73 38.80 2.12
5621 6467 8.696374 CATCAGGATTAAGAAGTAGTACTTGGA 58.304 37.037 20.21 2.47 38.80 3.53
5622 6468 8.478877 ACATCAGGATTAAGAAGTAGTACTTGG 58.521 37.037 20.21 0.00 38.80 3.61
5623 6469 9.307121 CACATCAGGATTAAGAAGTAGTACTTG 57.693 37.037 20.21 3.58 38.80 3.16
5624 6470 7.982354 GCACATCAGGATTAAGAAGTAGTACTT 59.018 37.037 15.48 15.48 41.95 2.24
5625 6471 7.124298 TGCACATCAGGATTAAGAAGTAGTACT 59.876 37.037 0.00 0.00 0.00 2.73
5637 6557 3.354948 AGCAGTTGCACATCAGGATTA 57.645 42.857 6.90 0.00 45.16 1.75
5699 6629 2.670229 GCAGTGAAAGCACCACATGATG 60.670 50.000 0.00 0.00 46.32 3.07
5802 6739 6.535150 GGTTGTTGATATCTGTTCTTGATCGA 59.465 38.462 3.98 0.00 0.00 3.59
5803 6740 6.313658 TGGTTGTTGATATCTGTTCTTGATCG 59.686 38.462 3.98 0.00 0.00 3.69
5804 6741 7.550551 TCTGGTTGTTGATATCTGTTCTTGATC 59.449 37.037 3.98 0.00 0.00 2.92
5805 6742 7.397221 TCTGGTTGTTGATATCTGTTCTTGAT 58.603 34.615 3.98 0.00 0.00 2.57
5806 6743 6.768483 TCTGGTTGTTGATATCTGTTCTTGA 58.232 36.000 3.98 0.00 0.00 3.02
5807 6744 7.335171 TCATCTGGTTGTTGATATCTGTTCTTG 59.665 37.037 3.98 0.00 0.00 3.02
5808 6745 7.397221 TCATCTGGTTGTTGATATCTGTTCTT 58.603 34.615 3.98 0.00 0.00 2.52
5827 6764 8.745837 GTTTAATAACGGCATCATTTTCATCTG 58.254 33.333 0.00 0.00 0.00 2.90
5829 6766 7.704472 TGGTTTAATAACGGCATCATTTTCATC 59.296 33.333 0.00 0.00 35.00 2.92
5858 6795 7.664318 ACGGAGGAAGTAGTTAACAAAATGATT 59.336 33.333 8.61 0.00 0.00 2.57
5861 6798 6.128363 GGACGGAGGAAGTAGTTAACAAAATG 60.128 42.308 8.61 0.00 0.00 2.32
5868 6805 3.173953 TGGGACGGAGGAAGTAGTTAA 57.826 47.619 0.00 0.00 0.00 2.01
5873 6810 4.533311 AGTTATTTTGGGACGGAGGAAGTA 59.467 41.667 0.00 0.00 0.00 2.24
5874 6811 3.329814 AGTTATTTTGGGACGGAGGAAGT 59.670 43.478 0.00 0.00 0.00 3.01
5875 6812 3.689649 CAGTTATTTTGGGACGGAGGAAG 59.310 47.826 0.00 0.00 0.00 3.46
5876 6813 3.073356 ACAGTTATTTTGGGACGGAGGAA 59.927 43.478 0.00 0.00 0.00 3.36
5877 6814 2.640826 ACAGTTATTTTGGGACGGAGGA 59.359 45.455 0.00 0.00 0.00 3.71
5878 6815 3.007635 GACAGTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
5879 6816 3.933332 GAGACAGTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
5880 6817 3.325425 TGAGACAGTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
5881 6818 3.670625 TGAGACAGTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
5882 6819 4.378459 GCTTGAGACAGTTATTTTGGGACG 60.378 45.833 0.00 0.00 0.00 4.79
5883 6820 4.762251 AGCTTGAGACAGTTATTTTGGGAC 59.238 41.667 0.00 0.00 0.00 4.46
5884 6821 4.985538 AGCTTGAGACAGTTATTTTGGGA 58.014 39.130 0.00 0.00 0.00 4.37
5885 6822 5.712152 AAGCTTGAGACAGTTATTTTGGG 57.288 39.130 0.00 0.00 0.00 4.12
5886 6823 7.440523 ACTAAGCTTGAGACAGTTATTTTGG 57.559 36.000 9.86 0.00 0.00 3.28
5887 6824 8.988934 TGTACTAAGCTTGAGACAGTTATTTTG 58.011 33.333 9.86 0.00 0.00 2.44
5888 6825 9.555727 TTGTACTAAGCTTGAGACAGTTATTTT 57.444 29.630 9.86 0.00 0.00 1.82
5889 6826 8.989980 GTTGTACTAAGCTTGAGACAGTTATTT 58.010 33.333 9.86 0.00 0.00 1.40
5890 6827 8.368668 AGTTGTACTAAGCTTGAGACAGTTATT 58.631 33.333 9.86 0.00 0.00 1.40
5891 6828 7.897864 AGTTGTACTAAGCTTGAGACAGTTAT 58.102 34.615 9.86 0.00 0.00 1.89
5892 6829 7.286215 AGTTGTACTAAGCTTGAGACAGTTA 57.714 36.000 9.86 0.00 0.00 2.24
5893 6830 6.163135 AGTTGTACTAAGCTTGAGACAGTT 57.837 37.500 9.86 0.08 0.00 3.16
5894 6831 5.793030 AGTTGTACTAAGCTTGAGACAGT 57.207 39.130 9.86 6.64 0.00 3.55
5895 6832 6.480320 ACAAAGTTGTACTAAGCTTGAGACAG 59.520 38.462 9.86 0.00 40.16 3.51
5896 6833 6.346096 ACAAAGTTGTACTAAGCTTGAGACA 58.654 36.000 9.86 7.12 40.16 3.41
5897 6834 6.846325 ACAAAGTTGTACTAAGCTTGAGAC 57.154 37.500 9.86 4.39 40.16 3.36
5920 6857 7.937942 AGTCTCAACTTTGTACTGACTCTAGTA 59.062 37.037 0.00 0.00 28.74 1.82
5921 6858 6.773685 AGTCTCAACTTTGTACTGACTCTAGT 59.226 38.462 0.00 0.00 28.74 2.57
5922 6859 7.209471 AGTCTCAACTTTGTACTGACTCTAG 57.791 40.000 0.00 0.00 28.74 2.43
5923 6860 7.204496 GAGTCTCAACTTTGTACTGACTCTA 57.796 40.000 18.32 0.00 42.99 2.43
5924 6861 6.079424 GAGTCTCAACTTTGTACTGACTCT 57.921 41.667 18.32 0.00 42.99 3.24
5925 6862 6.079424 AGAGTCTCAACTTTGTACTGACTC 57.921 41.667 18.13 18.13 45.18 3.36
5926 6863 6.472686 AAGAGTCTCAACTTTGTACTGACT 57.527 37.500 1.94 0.00 35.28 3.41
5927 6864 8.819643 AATAAGAGTCTCAACTTTGTACTGAC 57.180 34.615 1.94 0.00 35.28 3.51
5928 6865 9.832445 AAAATAAGAGTCTCAACTTTGTACTGA 57.168 29.630 1.94 0.00 35.28 3.41
5929 6866 9.869844 CAAAATAAGAGTCTCAACTTTGTACTG 57.130 33.333 1.94 0.00 35.28 2.74
5930 6867 9.057089 CCAAAATAAGAGTCTCAACTTTGTACT 57.943 33.333 1.94 1.11 35.28 2.73
5931 6868 8.290325 CCCAAAATAAGAGTCTCAACTTTGTAC 58.710 37.037 1.94 0.00 35.28 2.90
5932 6869 8.215050 TCCCAAAATAAGAGTCTCAACTTTGTA 58.785 33.333 1.94 0.00 35.28 2.41
5933 6870 7.013369 GTCCCAAAATAAGAGTCTCAACTTTGT 59.987 37.037 1.94 0.00 35.28 2.83
5934 6871 7.363431 GTCCCAAAATAAGAGTCTCAACTTTG 58.637 38.462 1.94 6.26 35.28 2.77
5935 6872 6.204882 CGTCCCAAAATAAGAGTCTCAACTTT 59.795 38.462 1.94 0.00 35.28 2.66
5936 6873 5.701290 CGTCCCAAAATAAGAGTCTCAACTT 59.299 40.000 1.94 0.00 35.28 2.66
5937 6874 5.238583 CGTCCCAAAATAAGAGTCTCAACT 58.761 41.667 1.94 0.00 38.88 3.16
5938 6875 4.392138 CCGTCCCAAAATAAGAGTCTCAAC 59.608 45.833 1.94 0.00 0.00 3.18
5939 6876 4.285003 TCCGTCCCAAAATAAGAGTCTCAA 59.715 41.667 1.94 0.00 0.00 3.02
5940 6877 3.835978 TCCGTCCCAAAATAAGAGTCTCA 59.164 43.478 1.94 0.00 0.00 3.27
5941 6878 4.434520 CTCCGTCCCAAAATAAGAGTCTC 58.565 47.826 0.00 0.00 0.00 3.36
5942 6879 3.197983 CCTCCGTCCCAAAATAAGAGTCT 59.802 47.826 0.00 0.00 0.00 3.24
5943 6880 3.532542 CCTCCGTCCCAAAATAAGAGTC 58.467 50.000 0.00 0.00 0.00 3.36
5944 6881 2.238898 CCCTCCGTCCCAAAATAAGAGT 59.761 50.000 0.00 0.00 0.00 3.24
5945 6882 2.504175 TCCCTCCGTCCCAAAATAAGAG 59.496 50.000 0.00 0.00 0.00 2.85
5946 6883 2.504175 CTCCCTCCGTCCCAAAATAAGA 59.496 50.000 0.00 0.00 0.00 2.10
5947 6884 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
5948 6885 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
5949 6886 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
5950 6887 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
5951 6888 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
5952 6889 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
5953 6890 2.852714 TTATACTCCCTCCGTCCCAA 57.147 50.000 0.00 0.00 0.00 4.12
5954 6891 2.852714 TTTATACTCCCTCCGTCCCA 57.147 50.000 0.00 0.00 0.00 4.37
5955 6892 4.386711 CAATTTTATACTCCCTCCGTCCC 58.613 47.826 0.00 0.00 0.00 4.46
5956 6893 3.813724 GCAATTTTATACTCCCTCCGTCC 59.186 47.826 0.00 0.00 0.00 4.79
5957 6894 4.448210 TGCAATTTTATACTCCCTCCGTC 58.552 43.478 0.00 0.00 0.00 4.79
5958 6895 4.497291 TGCAATTTTATACTCCCTCCGT 57.503 40.909 0.00 0.00 0.00 4.69
5959 6896 6.369065 GTCTATGCAATTTTATACTCCCTCCG 59.631 42.308 0.00 0.00 0.00 4.63
5960 6897 6.655425 GGTCTATGCAATTTTATACTCCCTCC 59.345 42.308 0.00 0.00 0.00 4.30
5961 6898 7.224297 TGGTCTATGCAATTTTATACTCCCTC 58.776 38.462 0.00 0.00 0.00 4.30
5962 6899 7.149202 TGGTCTATGCAATTTTATACTCCCT 57.851 36.000 0.00 0.00 0.00 4.20
5963 6900 7.284489 TGTTGGTCTATGCAATTTTATACTCCC 59.716 37.037 0.00 0.00 0.00 4.30
5964 6901 8.220755 TGTTGGTCTATGCAATTTTATACTCC 57.779 34.615 0.00 0.00 0.00 3.85
5965 6902 8.893727 ACTGTTGGTCTATGCAATTTTATACTC 58.106 33.333 0.00 0.00 0.00 2.59
5966 6903 8.807948 ACTGTTGGTCTATGCAATTTTATACT 57.192 30.769 0.00 0.00 0.00 2.12
5967 6904 9.503427 GAACTGTTGGTCTATGCAATTTTATAC 57.497 33.333 0.00 0.00 0.00 1.47
6031 6968 6.974622 GGATTAGATTGTTTGCGATGATTTGT 59.025 34.615 0.00 0.00 0.00 2.83
6058 6995 5.738619 ACTGGTGGAAACTTTCTTTTTGT 57.261 34.783 1.57 0.00 0.00 2.83
6159 7096 2.616510 CCCTCGGATCTTTCTTGCTTGT 60.617 50.000 0.00 0.00 0.00 3.16
6179 7116 2.378038 TCTTGCCATTAACATCAGCCC 58.622 47.619 0.00 0.00 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.