Multiple sequence alignment - TraesCS2B01G320100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G320100 chr2B 100.000 6149 0 0 1 6149 456171737 456177885 0.000000e+00 11356
1 TraesCS2B01G320100 chr2B 94.372 462 18 7 280 739 189614770 189615225 0.000000e+00 702
2 TraesCS2B01G320100 chr2B 98.214 168 2 1 5339 5505 389469407 389469240 6.030000e-75 292
3 TraesCS2B01G320100 chr2D 94.154 3866 146 29 725 4540 385268259 385272094 0.000000e+00 5814
4 TraesCS2B01G320100 chr2D 96.015 803 26 5 4536 5336 385278472 385279270 0.000000e+00 1301
5 TraesCS2B01G320100 chr2D 88.855 664 53 10 5501 6149 385279275 385279932 0.000000e+00 797
6 TraesCS2B01G320100 chr2D 91.925 161 12 1 93 253 385268081 385268240 2.230000e-54 224
7 TraesCS2B01G320100 chr2A 96.770 1703 43 9 3641 5336 520561187 520562884 0.000000e+00 2830
8 TraesCS2B01G320100 chr2A 96.574 1576 50 3 2074 3647 520554113 520555686 0.000000e+00 2608
9 TraesCS2B01G320100 chr2A 95.536 448 17 3 285 730 654602945 654603391 0.000000e+00 713
10 TraesCS2B01G320100 chr2A 84.405 731 53 27 750 1434 520553372 520554087 0.000000e+00 662
11 TraesCS2B01G320100 chr7B 95.787 451 17 2 280 728 713466571 713467021 0.000000e+00 726
12 TraesCS2B01G320100 chr7B 94.912 452 19 4 280 728 79732480 79732030 0.000000e+00 704
13 TraesCS2B01G320100 chr7B 94.469 452 22 3 280 729 247983872 247984322 0.000000e+00 693
14 TraesCS2B01G320100 chr7B 97.661 171 2 2 5343 5511 265440681 265440511 6.030000e-75 292
15 TraesCS2B01G320100 chr7B 92.632 95 4 2 1 92 739246295 739246389 3.870000e-27 134
16 TraesCS2B01G320100 chr1A 95.143 453 19 3 280 729 384069721 384069269 0.000000e+00 712
17 TraesCS2B01G320100 chr1A 92.063 189 12 3 5329 5515 377500407 377500220 4.730000e-66 263
18 TraesCS2B01G320100 chr1B 94.889 450 18 4 284 729 439014494 439014046 0.000000e+00 699
19 TraesCS2B01G320100 chr1B 93.443 183 9 3 5343 5523 628050851 628050670 1.020000e-67 268
20 TraesCS2B01G320100 chr6B 94.469 452 20 5 280 729 51563356 51563804 0.000000e+00 691
21 TraesCS2B01G320100 chr5A 94.298 456 18 6 280 728 340447357 340446903 0.000000e+00 691
22 TraesCS2B01G320100 chr5A 93.443 183 9 3 5340 5520 290391694 290391875 1.020000e-67 268
23 TraesCS2B01G320100 chr5A 93.333 90 3 2 4 91 545567970 545567882 5.000000e-26 130
24 TraesCS2B01G320100 chr3B 96.471 170 3 3 5338 5505 225179958 225180126 1.690000e-70 278
25 TraesCS2B01G320100 chr3B 91.489 94 6 1 1 92 707272787 707272880 1.800000e-25 128
26 TraesCS2B01G320100 chr7D 94.475 181 6 4 5340 5517 39001452 39001273 6.070000e-70 276
27 TraesCS2B01G320100 chr6D 93.407 182 9 3 5330 5509 389700529 389700709 3.650000e-67 267
28 TraesCS2B01G320100 chr1D 92.473 186 10 4 5346 5527 444346328 444346143 4.730000e-66 263
29 TraesCS2B01G320100 chr7A 94.382 89 4 1 4 91 53918576 53918488 1.080000e-27 135
30 TraesCS2B01G320100 chr7A 91.579 95 4 1 1 91 190478766 190478672 1.800000e-25 128
31 TraesCS2B01G320100 chr7A 92.473 93 2 2 4 91 700526212 700526120 1.800000e-25 128
32 TraesCS2B01G320100 chr3A 90.909 99 5 1 1 95 436431811 436431713 5.000000e-26 130
33 TraesCS2B01G320100 chr3A 92.391 92 3 1 4 91 709042158 709042067 1.800000e-25 128
34 TraesCS2B01G320100 chr5B 91.579 95 4 1 1 91 703506491 703506585 1.800000e-25 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G320100 chr2B 456171737 456177885 6148 False 11356 11356 100.0000 1 6149 1 chr2B.!!$F2 6148
1 TraesCS2B01G320100 chr2D 385268081 385272094 4013 False 3019 5814 93.0395 93 4540 2 chr2D.!!$F1 4447
2 TraesCS2B01G320100 chr2D 385278472 385279932 1460 False 1049 1301 92.4350 4536 6149 2 chr2D.!!$F2 1613
3 TraesCS2B01G320100 chr2A 520561187 520562884 1697 False 2830 2830 96.7700 3641 5336 1 chr2A.!!$F1 1695
4 TraesCS2B01G320100 chr2A 520553372 520555686 2314 False 1635 2608 90.4895 750 3647 2 chr2A.!!$F3 2897

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
425 426 0.037046 ACGGCCCAGTTAGTAAACGG 60.037 55.000 0.00 0.0 40.73 4.44 F
1609 1666 0.034756 TCACATCTCAACCACCCGTG 59.965 55.000 0.00 0.0 0.00 4.94 F
2373 2440 0.178958 AGAGTTCCACCCGTCTCACT 60.179 55.000 0.00 0.0 0.00 3.41 F
2398 2465 0.393077 ACAGTTTGAGCAGTACGCCT 59.607 50.000 6.15 0.0 44.04 5.52 F
3689 3765 3.133901 TCTTTACACACTTGAGCTGTGGA 59.866 43.478 7.50 0.0 42.90 4.02 F
4401 4480 2.489722 GCAGATTTCCCCACAGAAAGTC 59.510 50.000 0.00 0.0 39.04 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1713 1770 1.284785 GATGGTTGATGGGAGTGGGAA 59.715 52.381 0.00 0.0 0.00 3.97 R
2750 2817 5.788531 CGAAAATTGTCGTGGTCTTGAATAC 59.211 40.000 9.99 0.0 36.26 1.89 R
4360 4439 1.664659 CTCATCGCAGGAAAGCAGAAG 59.335 52.381 0.00 0.0 0.00 2.85 R
4401 4480 3.427528 GCATGCACTTGACAACATCTTTG 59.572 43.478 14.21 0.0 0.00 2.77 R
4733 4813 0.756903 GCCTCTAACCCTGCGGAATA 59.243 55.000 0.00 0.0 0.00 1.75 R
6022 6113 0.108992 CTTGTAAGCCCTACGTCGCA 60.109 55.000 0.00 0.0 32.65 5.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.653543 TGTTCATAGGGGTAGGGTGT 57.346 50.000 0.00 0.00 0.00 4.16
20 21 2.193127 TGTTCATAGGGGTAGGGTGTG 58.807 52.381 0.00 0.00 0.00 3.82
21 22 2.193993 GTTCATAGGGGTAGGGTGTGT 58.806 52.381 0.00 0.00 0.00 3.72
22 23 1.874129 TCATAGGGGTAGGGTGTGTG 58.126 55.000 0.00 0.00 0.00 3.82
23 24 1.079825 TCATAGGGGTAGGGTGTGTGT 59.920 52.381 0.00 0.00 0.00 3.72
24 25 1.209504 CATAGGGGTAGGGTGTGTGTG 59.790 57.143 0.00 0.00 0.00 3.82
25 26 1.196104 TAGGGGTAGGGTGTGTGTGC 61.196 60.000 0.00 0.00 0.00 4.57
26 27 2.358247 GGGTAGGGTGTGTGTGCG 60.358 66.667 0.00 0.00 0.00 5.34
27 28 2.424302 GGTAGGGTGTGTGTGCGT 59.576 61.111 0.00 0.00 0.00 5.24
28 29 1.227734 GGTAGGGTGTGTGTGCGTT 60.228 57.895 0.00 0.00 0.00 4.84
29 30 1.226030 GGTAGGGTGTGTGTGCGTTC 61.226 60.000 0.00 0.00 0.00 3.95
30 31 0.531090 GTAGGGTGTGTGTGCGTTCA 60.531 55.000 0.00 0.00 0.00 3.18
31 32 0.394938 TAGGGTGTGTGTGCGTTCAT 59.605 50.000 0.00 0.00 0.00 2.57
32 33 0.394938 AGGGTGTGTGTGCGTTCATA 59.605 50.000 0.00 0.00 0.00 2.15
33 34 0.796312 GGGTGTGTGTGCGTTCATAG 59.204 55.000 0.00 0.00 0.00 2.23
34 35 1.606994 GGGTGTGTGTGCGTTCATAGA 60.607 52.381 0.00 0.00 0.00 1.98
35 36 1.726791 GGTGTGTGTGCGTTCATAGAG 59.273 52.381 0.00 0.00 0.00 2.43
36 37 1.726791 GTGTGTGTGCGTTCATAGAGG 59.273 52.381 0.00 0.00 0.00 3.69
37 38 1.343142 TGTGTGTGCGTTCATAGAGGT 59.657 47.619 0.00 0.00 0.00 3.85
38 39 1.726791 GTGTGTGCGTTCATAGAGGTG 59.273 52.381 0.00 0.00 0.00 4.00
39 40 1.616374 TGTGTGCGTTCATAGAGGTGA 59.384 47.619 0.00 0.00 0.00 4.02
40 41 2.036604 TGTGTGCGTTCATAGAGGTGAA 59.963 45.455 0.00 0.00 35.84 3.18
48 49 3.349488 TCATAGAGGTGAACGTATGCG 57.651 47.619 0.19 0.19 44.93 4.73
49 50 1.787155 CATAGAGGTGAACGTATGCGC 59.213 52.381 0.00 0.00 42.83 6.09
50 51 0.248336 TAGAGGTGAACGTATGCGCG 60.248 55.000 0.00 0.00 42.83 6.86
52 53 2.009625 GAGGTGAACGTATGCGCGTG 62.010 60.000 13.61 0.00 45.00 5.34
53 54 2.377310 GGTGAACGTATGCGCGTGT 61.377 57.895 13.61 0.00 45.00 4.49
54 55 1.072116 GGTGAACGTATGCGCGTGTA 61.072 55.000 13.61 0.00 45.00 2.90
55 56 0.918619 GTGAACGTATGCGCGTGTAT 59.081 50.000 13.61 4.63 45.00 2.29
56 57 2.110990 GTGAACGTATGCGCGTGTATA 58.889 47.619 13.61 2.40 45.00 1.47
57 58 2.722629 GTGAACGTATGCGCGTGTATAT 59.277 45.455 13.61 0.00 45.00 0.86
58 59 2.722116 TGAACGTATGCGCGTGTATATG 59.278 45.455 20.41 20.41 45.00 1.78
59 60 2.691984 ACGTATGCGCGTGTATATGA 57.308 45.000 26.42 0.00 43.99 2.15
60 61 2.581637 ACGTATGCGCGTGTATATGAG 58.418 47.619 26.42 15.73 43.99 2.90
61 62 1.317611 CGTATGCGCGTGTATATGAGC 59.682 52.381 18.12 0.41 38.85 4.26
64 65 4.228451 CGCGTGTATATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
65 66 2.506544 CGCGTGTATATGAGCGCTT 58.493 52.632 13.26 0.00 46.56 4.68
66 67 0.159554 CGCGTGTATATGAGCGCTTG 59.840 55.000 13.26 0.00 46.56 4.01
67 68 1.209128 GCGTGTATATGAGCGCTTGT 58.791 50.000 13.26 5.98 45.48 3.16
68 69 1.071239 GCGTGTATATGAGCGCTTGTG 60.071 52.381 13.26 0.00 45.48 3.33
69 70 2.193447 CGTGTATATGAGCGCTTGTGT 58.807 47.619 13.26 4.27 0.00 3.72
70 71 2.603110 CGTGTATATGAGCGCTTGTGTT 59.397 45.455 13.26 0.00 0.00 3.32
71 72 3.062099 CGTGTATATGAGCGCTTGTGTTT 59.938 43.478 13.26 0.00 0.00 2.83
72 73 4.334443 GTGTATATGAGCGCTTGTGTTTG 58.666 43.478 13.26 0.00 0.00 2.93
73 74 4.000325 TGTATATGAGCGCTTGTGTTTGT 59.000 39.130 13.26 0.00 0.00 2.83
74 75 5.062934 GTGTATATGAGCGCTTGTGTTTGTA 59.937 40.000 13.26 0.00 0.00 2.41
75 76 2.969443 ATGAGCGCTTGTGTTTGTAC 57.031 45.000 13.26 0.00 0.00 2.90
76 77 1.948104 TGAGCGCTTGTGTTTGTACT 58.052 45.000 13.26 0.00 0.00 2.73
77 78 1.597195 TGAGCGCTTGTGTTTGTACTG 59.403 47.619 13.26 0.00 0.00 2.74
78 79 1.864711 GAGCGCTTGTGTTTGTACTGA 59.135 47.619 13.26 0.00 0.00 3.41
79 80 2.480419 GAGCGCTTGTGTTTGTACTGAT 59.520 45.455 13.26 0.00 0.00 2.90
80 81 2.224079 AGCGCTTGTGTTTGTACTGATG 59.776 45.455 2.64 0.00 0.00 3.07
81 82 2.574322 CGCTTGTGTTTGTACTGATGC 58.426 47.619 0.00 0.00 0.00 3.91
82 83 2.224079 CGCTTGTGTTTGTACTGATGCT 59.776 45.455 0.00 0.00 0.00 3.79
83 84 3.431912 CGCTTGTGTTTGTACTGATGCTA 59.568 43.478 0.00 0.00 0.00 3.49
84 85 4.084066 CGCTTGTGTTTGTACTGATGCTAA 60.084 41.667 0.00 0.00 0.00 3.09
85 86 5.559991 CGCTTGTGTTTGTACTGATGCTAAA 60.560 40.000 0.00 0.00 0.00 1.85
86 87 6.205784 GCTTGTGTTTGTACTGATGCTAAAA 58.794 36.000 0.00 0.00 0.00 1.52
87 88 6.695278 GCTTGTGTTTGTACTGATGCTAAAAA 59.305 34.615 0.00 0.00 0.00 1.94
113 114 2.047179 GCTGGTGACTTCCCGTCC 60.047 66.667 0.00 0.00 42.13 4.79
122 123 0.395312 ACTTCCCGTCCGTGTTTCAT 59.605 50.000 0.00 0.00 0.00 2.57
129 130 1.792006 GTCCGTGTTTCATTCCGTCT 58.208 50.000 0.00 0.00 0.00 4.18
131 132 0.165944 CCGTGTTTCATTCCGTCTGC 59.834 55.000 0.00 0.00 0.00 4.26
132 133 0.865111 CGTGTTTCATTCCGTCTGCA 59.135 50.000 0.00 0.00 0.00 4.41
133 134 1.262950 CGTGTTTCATTCCGTCTGCAA 59.737 47.619 0.00 0.00 0.00 4.08
153 154 1.080093 TTTCAAGATCGCGTCGCCT 60.080 52.632 12.44 0.00 0.00 5.52
159 160 3.396911 GATCGCGTCGCCTCTGTGA 62.397 63.158 12.44 1.85 0.00 3.58
226 227 0.618458 ATGTGTGGTTGGTCGGCTAT 59.382 50.000 0.00 0.00 0.00 2.97
236 237 4.217767 GGTTGGTCGGCTATTTTTCTTTCT 59.782 41.667 0.00 0.00 0.00 2.52
239 240 4.166523 GGTCGGCTATTTTTCTTTCTTGC 58.833 43.478 0.00 0.00 0.00 4.01
253 254 4.912395 TTGCGGGGGTGCTTTGCT 62.912 61.111 0.00 0.00 35.36 3.91
254 255 4.912395 TGCGGGGGTGCTTTGCTT 62.912 61.111 0.00 0.00 35.36 3.91
255 256 3.615709 GCGGGGGTGCTTTGCTTT 61.616 61.111 0.00 0.00 0.00 3.51
257 258 1.604147 GCGGGGGTGCTTTGCTTTAT 61.604 55.000 0.00 0.00 0.00 1.40
258 259 1.757682 CGGGGGTGCTTTGCTTTATA 58.242 50.000 0.00 0.00 0.00 0.98
270 271 2.475200 GCTTTATAGCTGGCCAAACG 57.525 50.000 7.01 0.00 44.27 3.60
271 272 1.065551 GCTTTATAGCTGGCCAAACGG 59.934 52.381 7.01 0.00 44.27 4.44
272 273 1.676006 CTTTATAGCTGGCCAAACGGG 59.324 52.381 7.01 0.00 40.85 5.28
318 319 3.307379 GGCACGACCCATCCTAATC 57.693 57.895 0.00 0.00 0.00 1.75
319 320 0.600255 GGCACGACCCATCCTAATCG 60.600 60.000 0.00 0.00 40.39 3.34
322 323 0.104304 ACGACCCATCCTAATCGTGC 59.896 55.000 0.00 0.00 45.50 5.34
323 324 0.600255 CGACCCATCCTAATCGTGCC 60.600 60.000 0.00 0.00 0.00 5.01
324 325 0.759346 GACCCATCCTAATCGTGCCT 59.241 55.000 0.00 0.00 0.00 4.75
325 326 0.469917 ACCCATCCTAATCGTGCCTG 59.530 55.000 0.00 0.00 0.00 4.85
326 327 0.250467 CCCATCCTAATCGTGCCTGG 60.250 60.000 0.00 0.00 0.00 4.45
327 328 0.469917 CCATCCTAATCGTGCCTGGT 59.530 55.000 0.00 0.00 0.00 4.00
328 329 1.691976 CCATCCTAATCGTGCCTGGTA 59.308 52.381 0.00 0.00 0.00 3.25
329 330 2.548067 CCATCCTAATCGTGCCTGGTAC 60.548 54.545 4.68 4.68 0.00 3.34
330 331 0.742505 TCCTAATCGTGCCTGGTACG 59.257 55.000 28.06 28.06 42.54 3.67
331 332 0.249322 CCTAATCGTGCCTGGTACGG 60.249 60.000 31.68 18.16 41.58 4.02
332 333 0.874607 CTAATCGTGCCTGGTACGGC 60.875 60.000 31.68 4.93 45.44 5.68
333 334 2.300850 TAATCGTGCCTGGTACGGCC 62.301 60.000 31.68 0.00 44.83 6.13
354 355 2.124901 CCCGCCAAGGCACGATTA 60.125 61.111 12.19 0.00 42.06 1.75
355 356 1.525995 CCCGCCAAGGCACGATTAT 60.526 57.895 12.19 0.00 42.06 1.28
356 357 1.101049 CCCGCCAAGGCACGATTATT 61.101 55.000 12.19 0.00 42.06 1.40
357 358 1.588674 CCGCCAAGGCACGATTATTA 58.411 50.000 12.19 0.00 42.06 0.98
358 359 2.151202 CCGCCAAGGCACGATTATTAT 58.849 47.619 12.19 0.00 42.06 1.28
359 360 3.331150 CCGCCAAGGCACGATTATTATA 58.669 45.455 12.19 0.00 42.06 0.98
360 361 3.124636 CCGCCAAGGCACGATTATTATAC 59.875 47.826 12.19 0.00 42.06 1.47
361 362 3.181534 CGCCAAGGCACGATTATTATACG 60.182 47.826 12.19 0.00 42.06 3.06
362 363 3.124636 GCCAAGGCACGATTATTATACGG 59.875 47.826 6.14 0.00 41.49 4.02
363 364 3.682858 CCAAGGCACGATTATTATACGGG 59.317 47.826 0.00 0.00 0.00 5.28
367 368 2.950433 CACGATTATTATACGGGCCGT 58.050 47.619 35.91 35.91 44.35 5.68
368 369 2.664568 CACGATTATTATACGGGCCGTG 59.335 50.000 39.80 22.32 41.39 4.94
369 370 1.657094 CGATTATTATACGGGCCGTGC 59.343 52.381 39.80 16.99 41.39 5.34
420 421 2.983791 GGCACGGCCCAGTTAGTA 59.016 61.111 0.00 0.00 44.06 1.82
421 422 1.297364 GGCACGGCCCAGTTAGTAA 59.703 57.895 0.00 0.00 44.06 2.24
422 423 0.321830 GGCACGGCCCAGTTAGTAAA 60.322 55.000 0.00 0.00 44.06 2.01
423 424 0.800631 GCACGGCCCAGTTAGTAAAC 59.199 55.000 0.00 0.00 35.72 2.01
424 425 1.073177 CACGGCCCAGTTAGTAAACG 58.927 55.000 0.00 0.00 40.73 3.60
425 426 0.037046 ACGGCCCAGTTAGTAAACGG 60.037 55.000 0.00 0.00 40.73 4.44
426 427 0.741927 CGGCCCAGTTAGTAAACGGG 60.742 60.000 11.93 11.93 46.88 5.28
428 429 3.164026 CCCAGTTAGTAAACGGGCC 57.836 57.895 0.00 0.00 46.22 5.80
429 430 0.741927 CCCAGTTAGTAAACGGGCCG 60.742 60.000 27.06 27.06 46.22 6.13
430 431 0.247185 CCAGTTAGTAAACGGGCCGA 59.753 55.000 35.78 7.50 42.77 5.54
431 432 1.353076 CAGTTAGTAAACGGGCCGAC 58.647 55.000 35.78 20.98 40.73 4.79
432 433 0.968405 AGTTAGTAAACGGGCCGACA 59.032 50.000 35.78 14.11 40.73 4.35
433 434 1.070821 GTTAGTAAACGGGCCGACAC 58.929 55.000 35.78 24.63 0.00 3.67
434 435 0.388391 TTAGTAAACGGGCCGACACG 60.388 55.000 35.78 5.59 0.00 4.49
435 436 1.523154 TAGTAAACGGGCCGACACGT 61.523 55.000 35.78 16.11 46.48 4.49
445 446 3.273834 CGACACGTTGGCCCGTTT 61.274 61.111 4.13 0.00 39.45 3.60
446 447 1.955157 CGACACGTTGGCCCGTTTA 60.955 57.895 4.13 0.00 39.45 2.01
447 448 1.864176 GACACGTTGGCCCGTTTAG 59.136 57.895 4.13 0.00 39.45 1.85
448 449 2.178892 GACACGTTGGCCCGTTTAGC 62.179 60.000 4.13 0.00 39.45 3.09
449 450 2.111460 ACGTTGGCCCGTTTAGCA 59.889 55.556 0.00 0.00 37.96 3.49
450 451 2.255881 ACGTTGGCCCGTTTAGCAC 61.256 57.895 0.00 0.00 37.96 4.40
458 459 2.358247 CGTTTAGCACGGTGGGCT 60.358 61.111 10.60 4.18 45.89 5.19
459 460 2.677003 CGTTTAGCACGGTGGGCTG 61.677 63.158 10.60 0.00 45.89 4.85
460 461 2.671619 TTTAGCACGGTGGGCTGC 60.672 61.111 10.60 0.00 42.62 5.25
461 462 3.483788 TTTAGCACGGTGGGCTGCA 62.484 57.895 10.60 0.00 42.62 4.41
462 463 2.762969 TTTAGCACGGTGGGCTGCAT 62.763 55.000 10.60 0.00 42.62 3.96
463 464 1.904990 TTAGCACGGTGGGCTGCATA 61.905 55.000 10.60 0.00 42.62 3.14
464 465 1.904990 TAGCACGGTGGGCTGCATAA 61.905 55.000 10.60 0.00 42.62 1.90
465 466 2.120909 GCACGGTGGGCTGCATAAT 61.121 57.895 10.60 0.00 33.31 1.28
466 467 1.666209 GCACGGTGGGCTGCATAATT 61.666 55.000 10.60 0.00 33.31 1.40
467 468 0.817013 CACGGTGGGCTGCATAATTT 59.183 50.000 0.50 0.00 0.00 1.82
468 469 1.204467 CACGGTGGGCTGCATAATTTT 59.796 47.619 0.50 0.00 0.00 1.82
469 470 2.425312 CACGGTGGGCTGCATAATTTTA 59.575 45.455 0.50 0.00 0.00 1.52
470 471 3.093057 ACGGTGGGCTGCATAATTTTAA 58.907 40.909 0.50 0.00 0.00 1.52
471 472 3.119280 ACGGTGGGCTGCATAATTTTAAC 60.119 43.478 0.50 0.00 0.00 2.01
472 473 3.736740 CGGTGGGCTGCATAATTTTAACC 60.737 47.826 0.50 0.00 0.00 2.85
473 474 3.450817 GGTGGGCTGCATAATTTTAACCT 59.549 43.478 0.50 0.00 0.00 3.50
474 475 4.432712 GTGGGCTGCATAATTTTAACCTG 58.567 43.478 0.50 0.00 0.00 4.00
475 476 4.081697 GTGGGCTGCATAATTTTAACCTGT 60.082 41.667 0.50 0.00 0.00 4.00
476 477 4.530161 TGGGCTGCATAATTTTAACCTGTT 59.470 37.500 0.50 0.00 0.00 3.16
477 478 5.717178 TGGGCTGCATAATTTTAACCTGTTA 59.283 36.000 0.50 0.00 0.00 2.41
478 479 6.382570 TGGGCTGCATAATTTTAACCTGTTAT 59.617 34.615 0.50 0.00 0.00 1.89
479 480 7.093112 TGGGCTGCATAATTTTAACCTGTTATT 60.093 33.333 0.50 0.00 0.00 1.40
480 481 7.768582 GGGCTGCATAATTTTAACCTGTTATTT 59.231 33.333 0.50 0.00 0.00 1.40
481 482 8.603181 GGCTGCATAATTTTAACCTGTTATTTG 58.397 33.333 0.50 0.00 0.00 2.32
482 483 9.364989 GCTGCATAATTTTAACCTGTTATTTGA 57.635 29.630 0.00 0.00 0.00 2.69
484 485 9.347934 TGCATAATTTTAACCTGTTATTTGACG 57.652 29.630 0.00 0.00 0.00 4.35
485 486 8.318167 GCATAATTTTAACCTGTTATTTGACGC 58.682 33.333 0.00 0.00 0.00 5.19
486 487 9.347934 CATAATTTTAACCTGTTATTTGACGCA 57.652 29.630 0.00 0.00 0.00 5.24
487 488 7.631915 AATTTTAACCTGTTATTTGACGCAC 57.368 32.000 0.00 0.00 0.00 5.34
488 489 6.380095 TTTTAACCTGTTATTTGACGCACT 57.620 33.333 0.00 0.00 0.00 4.40
489 490 3.896648 AACCTGTTATTTGACGCACTG 57.103 42.857 0.00 0.00 0.00 3.66
490 491 3.120321 ACCTGTTATTTGACGCACTGA 57.880 42.857 0.00 0.00 0.00 3.41
491 492 3.067106 ACCTGTTATTTGACGCACTGAG 58.933 45.455 0.00 0.00 0.00 3.35
492 493 2.159653 CCTGTTATTTGACGCACTGAGC 60.160 50.000 0.00 0.00 40.87 4.26
523 524 9.575868 TTTAGTCTATTTTTACATGTTGGGTCA 57.424 29.630 2.30 0.00 0.00 4.02
524 525 9.747898 TTAGTCTATTTTTACATGTTGGGTCAT 57.252 29.630 2.30 0.00 0.00 3.06
526 527 9.920946 AGTCTATTTTTACATGTTGGGTCATAT 57.079 29.630 2.30 0.00 0.00 1.78
567 568 2.931512 AAAAACATAATCGGGCCGTG 57.068 45.000 27.32 19.09 0.00 4.94
568 569 0.454196 AAAACATAATCGGGCCGTGC 59.546 50.000 27.32 0.00 0.00 5.34
569 570 1.711060 AAACATAATCGGGCCGTGCG 61.711 55.000 27.32 13.33 0.00 5.34
570 571 2.587753 CATAATCGGGCCGTGCGT 60.588 61.111 27.32 11.91 0.00 5.24
571 572 2.587753 ATAATCGGGCCGTGCGTG 60.588 61.111 27.32 0.00 0.00 5.34
655 656 3.784412 CGTTTAGCCCGTGCCGTG 61.784 66.667 0.00 0.00 38.69 4.94
656 657 4.097863 GTTTAGCCCGTGCCGTGC 62.098 66.667 0.00 0.00 38.69 5.34
731 732 2.624838 CCCATTTGGCCAGCTATAGTTG 59.375 50.000 5.11 9.49 0.00 3.16
739 740 2.683768 CCAGCTATAGTTGGGAGGTCT 58.316 52.381 24.13 0.00 41.94 3.85
747 748 3.292492 AGTTGGGAGGTCTTTTTCGTT 57.708 42.857 0.00 0.00 0.00 3.85
782 787 6.388278 CCTAAATAGATCGGGTAAGCTGTAC 58.612 44.000 0.00 0.00 0.00 2.90
796 801 4.514781 AGCTGTACAACACGTCATCTTA 57.485 40.909 0.00 0.00 0.00 2.10
824 833 2.814835 GGTGGAACTGACCGGGTGT 61.815 63.158 3.30 0.00 36.74 4.16
872 885 8.587952 AAACAAATTTCTGTGGCTGTAAATAC 57.412 30.769 0.00 0.00 0.00 1.89
944 967 3.744719 CGTCCCCTCTCGAACGCA 61.745 66.667 0.00 0.00 0.00 5.24
947 970 3.744719 CCCCTCTCGAACGCACGA 61.745 66.667 0.00 4.63 40.00 4.35
964 987 1.883084 GAGCGCCCGTCAATACCAG 60.883 63.158 2.29 0.00 0.00 4.00
973 996 0.462047 GTCAATACCAGTCCCCGCTG 60.462 60.000 0.00 0.00 36.31 5.18
988 1011 1.666234 GCTGCGATTCCTCCGGATC 60.666 63.158 3.57 0.00 0.00 3.36
1045 1068 3.879295 GCTCATTCCCTTCGAATTCATGA 59.121 43.478 6.22 4.04 39.28 3.07
1075 1098 5.393243 CGCGGATAGTTTTTGGGGATTTTTA 60.393 40.000 0.00 0.00 0.00 1.52
1128 1154 3.450578 GGATCAGCCGTATTCGTTGTTA 58.549 45.455 0.00 0.00 35.01 2.41
1260 1309 1.613630 TCTTCCCTCTCACCCCAGC 60.614 63.158 0.00 0.00 0.00 4.85
1288 1338 1.948104 CAACCCGCCATTAGATTCGA 58.052 50.000 0.00 0.00 0.00 3.71
1311 1365 6.458888 CGACTTGTGATATCTGTGAAGAGCTA 60.459 42.308 3.98 0.00 0.00 3.32
1382 1436 4.440826 TGTTTAGGGTTGCTTAGGTTGA 57.559 40.909 0.00 0.00 0.00 3.18
1406 1460 1.110442 TTGGGTTTCTGTGCTGTTGG 58.890 50.000 0.00 0.00 0.00 3.77
1434 1488 3.181434 TGTGTCTAATGGCTGGAGGTTTT 60.181 43.478 0.00 0.00 0.00 2.43
1435 1489 3.440522 GTGTCTAATGGCTGGAGGTTTTC 59.559 47.826 0.00 0.00 0.00 2.29
1436 1490 2.678336 GTCTAATGGCTGGAGGTTTTCG 59.322 50.000 0.00 0.00 0.00 3.46
1451 1505 4.033019 GGTTTTCGTTTCGGTTTCTCTTG 58.967 43.478 0.00 0.00 0.00 3.02
1452 1506 4.201841 GGTTTTCGTTTCGGTTTCTCTTGA 60.202 41.667 0.00 0.00 0.00 3.02
1453 1507 5.505159 GGTTTTCGTTTCGGTTTCTCTTGAT 60.505 40.000 0.00 0.00 0.00 2.57
1454 1508 6.293027 GGTTTTCGTTTCGGTTTCTCTTGATA 60.293 38.462 0.00 0.00 0.00 2.15
1455 1509 7.295930 GTTTTCGTTTCGGTTTCTCTTGATAT 58.704 34.615 0.00 0.00 0.00 1.63
1456 1510 7.429636 TTTCGTTTCGGTTTCTCTTGATATT 57.570 32.000 0.00 0.00 0.00 1.28
1457 1511 6.403333 TCGTTTCGGTTTCTCTTGATATTG 57.597 37.500 0.00 0.00 0.00 1.90
1458 1512 5.350365 TCGTTTCGGTTTCTCTTGATATTGG 59.650 40.000 0.00 0.00 0.00 3.16
1459 1513 5.350365 CGTTTCGGTTTCTCTTGATATTGGA 59.650 40.000 0.00 0.00 0.00 3.53
1460 1514 6.037172 CGTTTCGGTTTCTCTTGATATTGGAT 59.963 38.462 0.00 0.00 0.00 3.41
1461 1515 7.414098 CGTTTCGGTTTCTCTTGATATTGGATT 60.414 37.037 0.00 0.00 0.00 3.01
1462 1516 6.925610 TCGGTTTCTCTTGATATTGGATTG 57.074 37.500 0.00 0.00 0.00 2.67
1483 1537 9.741647 GGATTGATATTGGATTTCTTTGTCTTC 57.258 33.333 0.00 0.00 0.00 2.87
1499 1553 9.188588 TCTTTGTCTTCTTTTATATATACCGCG 57.811 33.333 0.00 0.00 0.00 6.46
1514 1568 1.877443 ACCGCGTTGAGTTTTGCTTAT 59.123 42.857 4.92 0.00 0.00 1.73
1605 1662 4.323417 TGTTGTATCACATCTCAACCACC 58.677 43.478 0.00 0.00 39.22 4.61
1608 1665 0.984230 ATCACATCTCAACCACCCGT 59.016 50.000 0.00 0.00 0.00 5.28
1609 1666 0.034756 TCACATCTCAACCACCCGTG 59.965 55.000 0.00 0.00 0.00 4.94
1631 1688 6.092533 CGTGGTAGTCCAATAAACGGTTTAAT 59.907 38.462 16.49 6.41 46.15 1.40
1637 1694 6.373495 AGTCCAATAAACGGTTTAATGGTCTC 59.627 38.462 31.75 24.99 43.52 3.36
1651 1708 3.973206 TGGTCTCGAAAAGCATTCCTA 57.027 42.857 0.00 0.00 0.00 2.94
1662 1719 6.418057 AAAAGCATTCCTATGTTGAACCAA 57.582 33.333 0.00 0.00 34.12 3.67
1664 1721 6.610075 AAGCATTCCTATGTTGAACCAAAT 57.390 33.333 0.00 0.00 34.12 2.32
1858 1915 5.376854 AATGGACACTCAACAAAGCATAC 57.623 39.130 0.00 0.00 0.00 2.39
1863 1920 3.436704 ACACTCAACAAAGCATACCGATG 59.563 43.478 0.00 0.00 36.02 3.84
1882 1939 4.745125 CGATGCAACATCGGTATAACTTCT 59.255 41.667 19.48 0.00 37.84 2.85
1883 1940 5.918576 CGATGCAACATCGGTATAACTTCTA 59.081 40.000 19.48 0.00 37.84 2.10
1884 1941 6.586463 CGATGCAACATCGGTATAACTTCTAT 59.414 38.462 19.48 0.00 37.84 1.98
1928 1985 1.077005 ACCAAGGGCAATAAAGAGGCA 59.923 47.619 0.00 0.00 0.00 4.75
1940 1997 7.712205 GGCAATAAAGAGGCAATTGTTGATTAT 59.288 33.333 7.40 4.07 33.96 1.28
2037 2097 4.695396 AGAATGTTTTGCATGCAGAAACA 58.305 34.783 35.63 35.63 44.45 2.83
2060 2120 6.599638 ACAATCATACTTTCAGGCCTCTTTAC 59.400 38.462 0.00 0.00 0.00 2.01
2154 2221 3.251729 CCATTGATATTCGCCCAGAGTTG 59.748 47.826 0.00 0.00 0.00 3.16
2368 2435 2.902523 GGAATAAGAGTTCCACCCGTC 58.097 52.381 0.98 0.00 45.63 4.79
2373 2440 0.178958 AGAGTTCCACCCGTCTCACT 60.179 55.000 0.00 0.00 0.00 3.41
2398 2465 0.393077 ACAGTTTGAGCAGTACGCCT 59.607 50.000 6.15 0.00 44.04 5.52
2763 2830 7.752239 CAGTCAAATGATTGTATTCAAGACCAC 59.248 37.037 0.00 0.00 37.79 4.16
2765 2832 6.652900 TCAAATGATTGTATTCAAGACCACGA 59.347 34.615 0.00 0.00 37.79 4.35
2938 3005 6.522946 CCTCATTCTATCATGACATCAGTGT 58.477 40.000 0.00 0.00 42.49 3.55
2946 3013 8.262933 TCTATCATGACATCAGTGTGAGATTTT 58.737 33.333 0.00 0.00 39.09 1.82
2947 3014 7.698506 ATCATGACATCAGTGTGAGATTTTT 57.301 32.000 0.00 0.00 39.09 1.94
2988 3055 7.880195 AGATCACAGTAGTTAATCCATATTGCC 59.120 37.037 0.00 0.00 0.00 4.52
3024 3091 7.041780 AGCTTTGTGGCAAGATTATAGTAATCG 60.042 37.037 0.00 0.00 34.17 3.34
3562 3637 5.476599 CACCATGAAAACCAAGTAGGATTCA 59.523 40.000 0.00 0.00 44.57 2.57
3599 3674 6.998074 TCCAGATCTTTGTGTGTCAGTTATTT 59.002 34.615 0.00 0.00 0.00 1.40
3689 3765 3.133901 TCTTTACACACTTGAGCTGTGGA 59.866 43.478 7.50 0.00 42.90 4.02
3928 4007 3.191371 AGGCGTTGCTTCAATTTCCTTAG 59.809 43.478 0.00 0.00 0.00 2.18
3987 4066 3.423539 TCTGGCTGTGTTATCTTTGCT 57.576 42.857 0.00 0.00 0.00 3.91
4175 4254 7.653647 CCTCTACATACTCTGTTCATTAGGTC 58.346 42.308 0.00 0.00 39.39 3.85
4178 4257 8.633561 TCTACATACTCTGTTCATTAGGTCATG 58.366 37.037 0.00 0.00 39.39 3.07
4401 4480 2.489722 GCAGATTTCCCCACAGAAAGTC 59.510 50.000 0.00 0.00 39.04 3.01
4730 4810 4.201881 CCGCCTTACCTAATTTTGCACTAC 60.202 45.833 0.00 0.00 0.00 2.73
4732 4812 4.703093 GCCTTACCTAATTTTGCACTACCA 59.297 41.667 0.00 0.00 0.00 3.25
4733 4813 5.359860 GCCTTACCTAATTTTGCACTACCAT 59.640 40.000 0.00 0.00 0.00 3.55
4875 4955 2.192263 GTTGAGGACTGGGAGGAGAAT 58.808 52.381 0.00 0.00 0.00 2.40
4985 5065 8.016229 CCATATGATCTACGACTAAGTGTGTAC 58.984 40.741 3.65 0.00 0.00 2.90
5115 5197 1.142870 ACTTCAGTGCTAAACCTGCCA 59.857 47.619 0.00 0.00 0.00 4.92
5165 5247 1.079127 GAGCAGCACCGCCTAAAGA 60.079 57.895 0.00 0.00 0.00 2.52
5167 5249 2.740714 GCAGCACCGCCTAAAGACG 61.741 63.158 0.00 0.00 0.00 4.18
5171 5253 1.804326 CACCGCCTAAAGACGACCG 60.804 63.158 0.00 0.00 0.00 4.79
5174 5256 2.884207 GCCTAAAGACGACCGCGG 60.884 66.667 26.86 26.86 43.17 6.46
5224 5306 5.485620 TCTCATCACAGGCTGATATTATGC 58.514 41.667 23.66 0.00 37.53 3.14
5237 5319 2.175878 ATTATGCTGCGGATGGAGAC 57.824 50.000 0.00 0.00 35.14 3.36
5241 5323 3.069980 GCTGCGGATGGAGACGACT 62.070 63.158 0.00 0.00 35.14 4.18
5263 5345 3.118702 TGGCTTATTTCGTTCCATACCGA 60.119 43.478 0.00 0.00 0.00 4.69
5267 5349 5.750067 GCTTATTTCGTTCCATACCGAGTTA 59.250 40.000 0.00 0.00 34.16 2.24
5336 5419 3.673052 CGGGTTGAAGGCATGTTGTATTG 60.673 47.826 0.00 0.00 0.00 1.90
5339 5422 5.047660 GGGTTGAAGGCATGTTGTATTGTAA 60.048 40.000 0.00 0.00 0.00 2.41
5340 5423 6.350949 GGGTTGAAGGCATGTTGTATTGTAAT 60.351 38.462 0.00 0.00 0.00 1.89
5341 5424 6.531240 GGTTGAAGGCATGTTGTATTGTAATG 59.469 38.462 0.00 0.00 0.00 1.90
5342 5425 6.832520 TGAAGGCATGTTGTATTGTAATGT 57.167 33.333 0.00 0.00 0.00 2.71
5343 5426 7.929941 TGAAGGCATGTTGTATTGTAATGTA 57.070 32.000 0.00 0.00 0.00 2.29
5344 5427 7.757526 TGAAGGCATGTTGTATTGTAATGTAC 58.242 34.615 0.00 0.00 0.00 2.90
5345 5428 7.609918 TGAAGGCATGTTGTATTGTAATGTACT 59.390 33.333 0.00 0.00 0.00 2.73
5346 5429 7.553881 AGGCATGTTGTATTGTAATGTACTC 57.446 36.000 0.00 0.00 0.00 2.59
5347 5430 6.542370 AGGCATGTTGTATTGTAATGTACTCC 59.458 38.462 0.00 0.00 0.00 3.85
5348 5431 6.238648 GGCATGTTGTATTGTAATGTACTCCC 60.239 42.308 0.00 0.00 0.00 4.30
5349 5432 6.542370 GCATGTTGTATTGTAATGTACTCCCT 59.458 38.462 0.00 0.00 0.00 4.20
5350 5433 7.254795 GCATGTTGTATTGTAATGTACTCCCTC 60.255 40.741 0.00 0.00 0.00 4.30
5351 5434 6.646267 TGTTGTATTGTAATGTACTCCCTCC 58.354 40.000 0.00 0.00 0.00 4.30
5352 5435 5.524971 TGTATTGTAATGTACTCCCTCCG 57.475 43.478 0.00 0.00 0.00 4.63
5353 5436 4.957954 TGTATTGTAATGTACTCCCTCCGT 59.042 41.667 0.00 0.00 0.00 4.69
5354 5437 5.422970 TGTATTGTAATGTACTCCCTCCGTT 59.577 40.000 0.00 0.00 0.00 4.44
5355 5438 4.460948 TTGTAATGTACTCCCTCCGTTC 57.539 45.455 0.00 0.00 0.00 3.95
5356 5439 2.762327 TGTAATGTACTCCCTCCGTTCC 59.238 50.000 0.00 0.00 0.00 3.62
5357 5440 2.249309 AATGTACTCCCTCCGTTCCT 57.751 50.000 0.00 0.00 0.00 3.36
5358 5441 3.393426 AATGTACTCCCTCCGTTCCTA 57.607 47.619 0.00 0.00 0.00 2.94
5359 5442 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
5360 5443 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
5361 5444 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
5362 5445 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
5363 5446 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
5364 5447 5.901276 TGTACTCCCTCCGTTCCTAAATATT 59.099 40.000 0.00 0.00 0.00 1.28
5365 5448 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
5366 5449 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
5367 5450 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
5368 5451 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
5369 5452 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
5370 5453 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
5371 5454 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
5372 5455 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
5373 5456 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
5374 5457 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
5375 5458 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
5376 5459 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
5389 5472 8.561738 TTGTCTTTCTAGAGTTTTCAACAAGT 57.438 30.769 0.00 0.00 0.00 3.16
5390 5473 7.974675 TGTCTTTCTAGAGTTTTCAACAAGTG 58.025 34.615 0.00 0.00 0.00 3.16
5391 5474 7.822334 TGTCTTTCTAGAGTTTTCAACAAGTGA 59.178 33.333 0.00 0.00 0.00 3.41
5392 5475 8.117370 GTCTTTCTAGAGTTTTCAACAAGTGAC 58.883 37.037 0.00 0.00 35.39 3.67
5393 5476 8.041323 TCTTTCTAGAGTTTTCAACAAGTGACT 58.959 33.333 0.00 0.00 35.39 3.41
5394 5477 9.314321 CTTTCTAGAGTTTTCAACAAGTGACTA 57.686 33.333 0.00 0.00 35.39 2.59
5395 5478 8.644318 TTCTAGAGTTTTCAACAAGTGACTAC 57.356 34.615 0.00 0.00 35.39 2.73
5396 5479 7.778083 TCTAGAGTTTTCAACAAGTGACTACA 58.222 34.615 0.00 0.00 35.39 2.74
5397 5480 8.421784 TCTAGAGTTTTCAACAAGTGACTACAT 58.578 33.333 0.00 0.00 35.39 2.29
5398 5481 9.692749 CTAGAGTTTTCAACAAGTGACTACATA 57.307 33.333 0.00 0.00 35.39 2.29
5399 5482 8.366671 AGAGTTTTCAACAAGTGACTACATAC 57.633 34.615 0.00 0.00 35.39 2.39
5400 5483 7.169308 AGAGTTTTCAACAAGTGACTACATACG 59.831 37.037 0.00 0.00 35.39 3.06
5401 5484 6.202188 AGTTTTCAACAAGTGACTACATACGG 59.798 38.462 0.00 0.00 35.39 4.02
5402 5485 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
5403 5486 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
5404 5487 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
5405 5488 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
5406 5489 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
5407 5490 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
5408 5491 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
5409 5492 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
5410 5493 6.216801 AGTGACTACATACGGAGCAAAATA 57.783 37.500 0.00 0.00 0.00 1.40
5411 5494 6.636705 AGTGACTACATACGGAGCAAAATAA 58.363 36.000 0.00 0.00 0.00 1.40
5412 5495 6.757010 AGTGACTACATACGGAGCAAAATAAG 59.243 38.462 0.00 0.00 0.00 1.73
5413 5496 6.534079 GTGACTACATACGGAGCAAAATAAGT 59.466 38.462 0.00 0.00 0.00 2.24
5414 5497 6.533723 TGACTACATACGGAGCAAAATAAGTG 59.466 38.462 0.00 0.00 0.00 3.16
5415 5498 6.636705 ACTACATACGGAGCAAAATAAGTGA 58.363 36.000 0.00 0.00 0.00 3.41
5416 5499 7.101054 ACTACATACGGAGCAAAATAAGTGAA 58.899 34.615 0.00 0.00 0.00 3.18
5417 5500 7.769044 ACTACATACGGAGCAAAATAAGTGAAT 59.231 33.333 0.00 0.00 0.00 2.57
5418 5501 9.256477 CTACATACGGAGCAAAATAAGTGAATA 57.744 33.333 0.00 0.00 0.00 1.75
5419 5502 8.677148 ACATACGGAGCAAAATAAGTGAATAT 57.323 30.769 0.00 0.00 0.00 1.28
5420 5503 9.772973 ACATACGGAGCAAAATAAGTGAATATA 57.227 29.630 0.00 0.00 0.00 0.86
5422 5505 9.772973 ATACGGAGCAAAATAAGTGAATATACA 57.227 29.630 0.00 0.00 0.00 2.29
5423 5506 7.916552 ACGGAGCAAAATAAGTGAATATACAC 58.083 34.615 0.00 0.00 40.60 2.90
5456 5539 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
5458 5541 8.502105 TGTCTATATACATCCGTATGTGGTAG 57.498 38.462 3.56 3.93 45.99 3.18
5459 5542 8.105197 TGTCTATATACATCCGTATGTGGTAGT 58.895 37.037 3.56 0.00 45.99 2.73
5460 5543 8.610896 GTCTATATACATCCGTATGTGGTAGTC 58.389 40.741 3.56 0.00 45.99 2.59
5461 5544 8.546322 TCTATATACATCCGTATGTGGTAGTCT 58.454 37.037 3.56 0.00 45.99 3.24
5462 5545 9.828039 CTATATACATCCGTATGTGGTAGTCTA 57.172 37.037 3.56 0.00 45.99 2.59
5464 5547 9.696572 ATATACATCCGTATGTGGTAGTCTATT 57.303 33.333 3.56 0.00 45.99 1.73
5465 5548 6.726490 ACATCCGTATGTGGTAGTCTATTT 57.274 37.500 0.00 0.00 44.79 1.40
5466 5549 6.513180 ACATCCGTATGTGGTAGTCTATTTG 58.487 40.000 0.00 0.00 44.79 2.32
5467 5550 6.322969 ACATCCGTATGTGGTAGTCTATTTGA 59.677 38.462 0.00 0.00 44.79 2.69
5468 5551 6.778834 TCCGTATGTGGTAGTCTATTTGAA 57.221 37.500 0.00 0.00 0.00 2.69
5469 5552 7.356089 TCCGTATGTGGTAGTCTATTTGAAT 57.644 36.000 0.00 0.00 0.00 2.57
5470 5553 7.431249 TCCGTATGTGGTAGTCTATTTGAATC 58.569 38.462 0.00 0.00 0.00 2.52
5471 5554 7.287005 TCCGTATGTGGTAGTCTATTTGAATCT 59.713 37.037 0.00 0.00 0.00 2.40
5472 5555 7.595502 CCGTATGTGGTAGTCTATTTGAATCTC 59.404 40.741 0.00 0.00 0.00 2.75
5473 5556 8.353684 CGTATGTGGTAGTCTATTTGAATCTCT 58.646 37.037 0.00 0.00 0.00 3.10
5514 5597 4.425520 GAACGGAGGAGTATATGCTATGC 58.574 47.826 0.00 0.00 0.00 3.14
5533 5616 5.920193 ATGCATGTTGCTGGTATAAAGTT 57.080 34.783 0.00 0.00 45.31 2.66
5552 5635 3.005367 AGTTGGCCAGAAAATAAACACCG 59.995 43.478 5.11 0.00 0.00 4.94
5554 5637 2.294791 TGGCCAGAAAATAAACACCGTG 59.705 45.455 0.00 0.00 0.00 4.94
5557 5640 3.610821 GCCAGAAAATAAACACCGTGTCC 60.611 47.826 4.23 0.00 0.00 4.02
5558 5641 3.364565 CCAGAAAATAAACACCGTGTCCG 60.365 47.826 4.23 0.00 0.00 4.79
5609 5692 9.793259 ACAACTGAGTTATGTATAATTATGGGG 57.207 33.333 8.28 0.00 0.00 4.96
5610 5693 9.231297 CAACTGAGTTATGTATAATTATGGGGG 57.769 37.037 8.28 0.00 0.00 5.40
5612 5695 9.624037 ACTGAGTTATGTATAATTATGGGGGTA 57.376 33.333 8.28 0.00 0.00 3.69
5620 5703 7.051623 TGTATAATTATGGGGGTATCAATCGC 58.948 38.462 8.28 0.00 0.00 4.58
5621 5704 4.380843 AATTATGGGGGTATCAATCGCA 57.619 40.909 0.00 0.00 0.00 5.10
5625 5708 0.250901 GGGGGTATCAATCGCAGCAT 60.251 55.000 0.00 0.00 0.00 3.79
5626 5709 1.160137 GGGGTATCAATCGCAGCATC 58.840 55.000 0.00 0.00 0.00 3.91
5630 5713 3.365666 GGGTATCAATCGCAGCATCATTG 60.366 47.826 0.00 0.00 0.00 2.82
5655 5738 1.702182 TTCTTGTGCCTGGCAAATGA 58.298 45.000 25.23 22.32 41.47 2.57
5658 5741 3.018856 TCTTGTGCCTGGCAAATGATAG 58.981 45.455 25.23 12.47 41.47 2.08
5670 5753 3.877559 CAAATGATAGCAGGGTGTCTCA 58.122 45.455 0.00 0.00 0.00 3.27
5683 5766 3.364964 GGGTGTCTCAACAAAGTTATGCG 60.365 47.826 0.00 0.00 37.08 4.73
5692 5775 8.440059 TCTCAACAAAGTTATGCGTAATTACAG 58.560 33.333 15.67 9.24 0.00 2.74
5711 5796 5.968676 ACAGGTATCCCTTAGTATTGCAA 57.031 39.130 0.00 0.00 39.89 4.08
5719 5804 9.120538 GTATCCCTTAGTATTGCAAAATTCTCA 57.879 33.333 1.71 0.00 0.00 3.27
5728 5813 1.206371 GCAAAATTCTCATGGCTGGCT 59.794 47.619 2.00 0.00 0.00 4.75
5737 5822 6.625532 TTCTCATGGCTGGCTAATGATATA 57.374 37.500 2.00 0.00 30.31 0.86
5738 5823 6.819947 TCTCATGGCTGGCTAATGATATAT 57.180 37.500 2.00 0.00 30.31 0.86
5739 5824 6.589135 TCTCATGGCTGGCTAATGATATATG 58.411 40.000 2.00 0.00 30.31 1.78
5740 5825 6.157471 TCTCATGGCTGGCTAATGATATATGT 59.843 38.462 2.00 0.00 30.31 2.29
5741 5826 6.117488 TCATGGCTGGCTAATGATATATGTG 58.883 40.000 2.00 0.00 0.00 3.21
5745 5832 7.177184 TGGCTGGCTAATGATATATGTGAAAT 58.823 34.615 2.00 0.00 0.00 2.17
5783 5870 9.599322 GTTCTATAGTTTTGACATGTTTCAGTG 57.401 33.333 0.00 0.00 0.00 3.66
5811 5898 4.492570 CGTGAATCTGAACACTATTTCGCC 60.493 45.833 13.45 0.00 35.23 5.54
5812 5899 3.938963 TGAATCTGAACACTATTTCGCCC 59.061 43.478 0.00 0.00 0.00 6.13
5814 5901 1.906574 TCTGAACACTATTTCGCCCCT 59.093 47.619 0.00 0.00 0.00 4.79
5823 5910 5.071250 ACACTATTTCGCCCCTGAATATGTA 59.929 40.000 0.00 0.00 0.00 2.29
5836 5925 5.294306 CCTGAATATGTATGTGTGTGTGGTC 59.706 44.000 0.00 0.00 0.00 4.02
5841 5930 1.041437 TATGTGTGTGTGGTCGTCCA 58.959 50.000 0.00 0.00 42.05 4.02
5845 5934 1.736645 GTGTGTGGTCGTCCATCGG 60.737 63.158 4.29 0.00 46.20 4.18
5860 5949 5.334105 CGTCCATCGGAAATATCATGAAACC 60.334 44.000 0.00 0.00 31.38 3.27
5885 5974 2.449464 CCTGAACCATGAAAGCATCCA 58.551 47.619 0.00 0.00 30.68 3.41
5890 5979 1.271871 ACCATGAAAGCATCCACCGAA 60.272 47.619 0.00 0.00 30.68 4.30
5905 5994 2.745281 CACCGAATATGTGTTTCCGGTT 59.255 45.455 0.00 0.00 31.94 4.44
5930 6021 4.536364 CGATGCTTACACGGATGAAAAT 57.464 40.909 0.00 0.00 0.00 1.82
5944 6035 6.488683 ACGGATGAAAATGAAGACCTGTTTTA 59.511 34.615 0.00 0.00 0.00 1.52
5945 6036 7.013846 ACGGATGAAAATGAAGACCTGTTTTAA 59.986 33.333 0.00 0.00 0.00 1.52
5950 6041 8.194769 TGAAAATGAAGACCTGTTTTAAGTTCC 58.805 33.333 0.00 0.00 0.00 3.62
5961 6052 5.837437 TGTTTTAAGTTCCGCATCAATGTT 58.163 33.333 0.00 0.00 0.00 2.71
5992 6083 2.164219 ACCGCTTGATGCTTTTACATGG 59.836 45.455 0.00 0.00 40.11 3.66
5996 6087 4.201940 CGCTTGATGCTTTTACATGGATGA 60.202 41.667 0.00 0.00 40.11 2.92
5998 6089 4.880886 TGATGCTTTTACATGGATGACG 57.119 40.909 0.00 0.00 0.00 4.35
6000 6091 4.332543 TGATGCTTTTACATGGATGACGTC 59.667 41.667 9.11 9.11 0.00 4.34
6011 6102 3.186909 TGGATGACGTCAATCTTAAGCG 58.813 45.455 24.13 0.00 0.00 4.68
6012 6103 3.187700 GGATGACGTCAATCTTAAGCGT 58.812 45.455 24.13 0.75 38.55 5.07
6050 6141 3.799755 GCTTACAAGGGGCGCGTG 61.800 66.667 15.39 15.39 0.00 5.34
6083 6174 7.894753 TGATCAATTGGGCAACTGATTATTA 57.105 32.000 5.42 0.00 37.39 0.98
6124 6222 1.953686 GTTGCCACAGCTTTTGAGGTA 59.046 47.619 0.00 0.00 39.49 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.193127 CACACCCTACCCCTATGAACA 58.807 52.381 0.00 0.00 0.00 3.18
1 2 2.093128 CACACACCCTACCCCTATGAAC 60.093 54.545 0.00 0.00 0.00 3.18
2 3 2.193127 CACACACCCTACCCCTATGAA 58.807 52.381 0.00 0.00 0.00 2.57
3 4 1.079825 ACACACACCCTACCCCTATGA 59.920 52.381 0.00 0.00 0.00 2.15
4 5 1.209504 CACACACACCCTACCCCTATG 59.790 57.143 0.00 0.00 0.00 2.23
5 6 1.580059 CACACACACCCTACCCCTAT 58.420 55.000 0.00 0.00 0.00 2.57
6 7 1.196104 GCACACACACCCTACCCCTA 61.196 60.000 0.00 0.00 0.00 3.53
7 8 2.526046 GCACACACACCCTACCCCT 61.526 63.158 0.00 0.00 0.00 4.79
8 9 2.033602 GCACACACACCCTACCCC 59.966 66.667 0.00 0.00 0.00 4.95
9 10 2.358247 CGCACACACACCCTACCC 60.358 66.667 0.00 0.00 0.00 3.69
10 11 1.226030 GAACGCACACACACCCTACC 61.226 60.000 0.00 0.00 0.00 3.18
11 12 0.531090 TGAACGCACACACACCCTAC 60.531 55.000 0.00 0.00 0.00 3.18
12 13 0.394938 ATGAACGCACACACACCCTA 59.605 50.000 0.00 0.00 0.00 3.53
13 14 0.394938 TATGAACGCACACACACCCT 59.605 50.000 0.00 0.00 0.00 4.34
14 15 0.796312 CTATGAACGCACACACACCC 59.204 55.000 0.00 0.00 0.00 4.61
15 16 1.726791 CTCTATGAACGCACACACACC 59.273 52.381 0.00 0.00 0.00 4.16
16 17 1.726791 CCTCTATGAACGCACACACAC 59.273 52.381 0.00 0.00 0.00 3.82
17 18 1.343142 ACCTCTATGAACGCACACACA 59.657 47.619 0.00 0.00 0.00 3.72
18 19 1.726791 CACCTCTATGAACGCACACAC 59.273 52.381 0.00 0.00 0.00 3.82
19 20 1.616374 TCACCTCTATGAACGCACACA 59.384 47.619 0.00 0.00 0.00 3.72
20 21 2.363788 TCACCTCTATGAACGCACAC 57.636 50.000 0.00 0.00 0.00 3.82
21 22 2.683968 GTTCACCTCTATGAACGCACA 58.316 47.619 3.11 0.00 46.55 4.57
27 28 3.702330 CGCATACGTTCACCTCTATGAA 58.298 45.455 0.00 0.00 36.23 2.57
28 29 2.543031 GCGCATACGTTCACCTCTATGA 60.543 50.000 0.30 0.00 42.83 2.15
29 30 1.787155 GCGCATACGTTCACCTCTATG 59.213 52.381 0.30 0.00 42.83 2.23
30 31 1.599667 CGCGCATACGTTCACCTCTAT 60.600 52.381 8.75 0.00 42.83 1.98
31 32 0.248336 CGCGCATACGTTCACCTCTA 60.248 55.000 8.75 0.00 42.83 2.43
32 33 1.516386 CGCGCATACGTTCACCTCT 60.516 57.895 8.75 0.00 42.83 3.69
33 34 1.804326 ACGCGCATACGTTCACCTC 60.804 57.895 5.73 0.00 45.75 3.85
34 35 2.092291 CACGCGCATACGTTCACCT 61.092 57.895 5.73 0.00 45.75 4.00
35 36 1.072116 TACACGCGCATACGTTCACC 61.072 55.000 5.73 0.00 45.75 4.02
36 37 0.918619 ATACACGCGCATACGTTCAC 59.081 50.000 5.73 0.00 45.75 3.18
37 38 2.471862 TATACACGCGCATACGTTCA 57.528 45.000 5.73 0.00 45.75 3.18
38 39 2.975193 TCATATACACGCGCATACGTTC 59.025 45.455 5.73 0.00 45.75 3.95
39 40 2.977829 CTCATATACACGCGCATACGTT 59.022 45.455 5.73 0.00 45.75 3.99
41 42 1.317611 GCTCATATACACGCGCATACG 59.682 52.381 5.73 0.00 44.07 3.06
42 43 1.317611 CGCTCATATACACGCGCATAC 59.682 52.381 5.73 0.00 39.11 2.39
43 44 1.613270 CGCTCATATACACGCGCATA 58.387 50.000 5.73 1.53 39.11 3.14
44 45 2.434688 CGCTCATATACACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
45 46 3.916439 CGCTCATATACACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
49 50 2.193447 ACACAAGCGCTCATATACACG 58.807 47.619 12.06 0.00 0.00 4.49
50 51 4.142902 ACAAACACAAGCGCTCATATACAC 60.143 41.667 12.06 0.00 0.00 2.90
51 52 4.000325 ACAAACACAAGCGCTCATATACA 59.000 39.130 12.06 0.00 0.00 2.29
52 53 4.600012 ACAAACACAAGCGCTCATATAC 57.400 40.909 12.06 0.00 0.00 1.47
53 54 5.290885 CAGTACAAACACAAGCGCTCATATA 59.709 40.000 12.06 0.00 0.00 0.86
54 55 4.093408 CAGTACAAACACAAGCGCTCATAT 59.907 41.667 12.06 0.00 0.00 1.78
55 56 3.431912 CAGTACAAACACAAGCGCTCATA 59.568 43.478 12.06 0.00 0.00 2.15
56 57 2.224079 CAGTACAAACACAAGCGCTCAT 59.776 45.455 12.06 0.00 0.00 2.90
57 58 1.597195 CAGTACAAACACAAGCGCTCA 59.403 47.619 12.06 0.00 0.00 4.26
58 59 1.864711 TCAGTACAAACACAAGCGCTC 59.135 47.619 12.06 0.00 0.00 5.03
59 60 1.948104 TCAGTACAAACACAAGCGCT 58.052 45.000 2.64 2.64 0.00 5.92
60 61 2.574322 CATCAGTACAAACACAAGCGC 58.426 47.619 0.00 0.00 0.00 5.92
61 62 2.224079 AGCATCAGTACAAACACAAGCG 59.776 45.455 0.00 0.00 0.00 4.68
62 63 3.904136 AGCATCAGTACAAACACAAGC 57.096 42.857 0.00 0.00 0.00 4.01
86 87 2.568623 AGTCACCAGCCTCGATTTTT 57.431 45.000 0.00 0.00 0.00 1.94
87 88 2.427506 GAAGTCACCAGCCTCGATTTT 58.572 47.619 0.00 0.00 0.00 1.82
88 89 1.339151 GGAAGTCACCAGCCTCGATTT 60.339 52.381 0.00 0.00 0.00 2.17
89 90 0.250513 GGAAGTCACCAGCCTCGATT 59.749 55.000 0.00 0.00 0.00 3.34
90 91 1.617947 GGGAAGTCACCAGCCTCGAT 61.618 60.000 0.00 0.00 0.00 3.59
91 92 2.283529 GGGAAGTCACCAGCCTCGA 61.284 63.158 0.00 0.00 0.00 4.04
113 114 0.865111 TGCAGACGGAATGAAACACG 59.135 50.000 0.00 0.00 0.00 4.49
122 123 2.912771 TCTTGAAACTTGCAGACGGAA 58.087 42.857 0.00 0.00 0.00 4.30
129 130 1.194547 GACGCGATCTTGAAACTTGCA 59.805 47.619 15.93 0.00 0.00 4.08
131 132 1.783416 GCGACGCGATCTTGAAACTTG 60.783 52.381 15.93 0.00 0.00 3.16
132 133 0.438830 GCGACGCGATCTTGAAACTT 59.561 50.000 15.93 0.00 0.00 2.66
133 134 1.352156 GGCGACGCGATCTTGAAACT 61.352 55.000 15.93 0.00 0.00 2.66
153 154 2.587247 GCTGCCACTCCCTCACAGA 61.587 63.158 0.00 0.00 0.00 3.41
159 160 3.241530 TCGTTGCTGCCACTCCCT 61.242 61.111 2.24 0.00 0.00 4.20
196 197 2.625823 CCACACATCCAACACGGGC 61.626 63.158 0.00 0.00 34.36 6.13
199 200 0.310543 CCAACCACACATCCAACACG 59.689 55.000 0.00 0.00 0.00 4.49
226 227 1.410882 CACCCCCGCAAGAAAGAAAAA 59.589 47.619 0.00 0.00 43.02 1.94
236 237 4.912395 AGCAAAGCACCCCCGCAA 62.912 61.111 0.00 0.00 0.00 4.85
239 240 1.676006 CTATAAAGCAAAGCACCCCCG 59.324 52.381 0.00 0.00 0.00 5.73
253 254 1.757682 CCCGTTTGGCCAGCTATAAA 58.242 50.000 5.11 0.00 0.00 1.40
254 255 3.487576 CCCGTTTGGCCAGCTATAA 57.512 52.632 5.11 0.00 0.00 0.98
298 299 2.040009 ATTAGGATGGGTCGTGCCGG 62.040 60.000 0.00 0.00 38.44 6.13
299 300 0.600255 GATTAGGATGGGTCGTGCCG 60.600 60.000 0.00 0.00 38.44 5.69
300 301 0.600255 CGATTAGGATGGGTCGTGCC 60.600 60.000 0.00 0.00 0.00 5.01
301 302 0.104304 ACGATTAGGATGGGTCGTGC 59.896 55.000 0.00 0.00 44.61 5.34
303 304 0.104304 GCACGATTAGGATGGGTCGT 59.896 55.000 0.00 0.00 46.95 4.34
304 305 0.600255 GGCACGATTAGGATGGGTCG 60.600 60.000 0.00 0.00 39.78 4.79
305 306 0.759346 AGGCACGATTAGGATGGGTC 59.241 55.000 0.00 0.00 0.00 4.46
306 307 0.469917 CAGGCACGATTAGGATGGGT 59.530 55.000 0.00 0.00 0.00 4.51
307 308 0.250467 CCAGGCACGATTAGGATGGG 60.250 60.000 0.00 0.00 0.00 4.00
308 309 0.469917 ACCAGGCACGATTAGGATGG 59.530 55.000 0.00 0.00 0.00 3.51
309 310 2.755650 GTACCAGGCACGATTAGGATG 58.244 52.381 0.00 0.00 0.00 3.51
310 311 1.340248 CGTACCAGGCACGATTAGGAT 59.660 52.381 6.32 0.00 41.91 3.24
311 312 0.742505 CGTACCAGGCACGATTAGGA 59.257 55.000 6.32 0.00 41.91 2.94
312 313 0.249322 CCGTACCAGGCACGATTAGG 60.249 60.000 14.31 0.00 41.91 2.69
313 314 3.267900 CCGTACCAGGCACGATTAG 57.732 57.895 14.31 0.00 41.91 1.73
337 338 1.101049 AATAATCGTGCCTTGGCGGG 61.101 55.000 7.18 1.48 0.00 6.13
338 339 1.588674 TAATAATCGTGCCTTGGCGG 58.411 50.000 7.18 1.84 0.00 6.13
339 340 3.181534 CGTATAATAATCGTGCCTTGGCG 60.182 47.826 7.18 0.00 0.00 5.69
340 341 3.124636 CCGTATAATAATCGTGCCTTGGC 59.875 47.826 4.43 4.43 0.00 4.52
341 342 3.682858 CCCGTATAATAATCGTGCCTTGG 59.317 47.826 0.00 0.00 0.00 3.61
342 343 3.124636 GCCCGTATAATAATCGTGCCTTG 59.875 47.826 0.00 0.00 0.00 3.61
343 344 3.332034 GCCCGTATAATAATCGTGCCTT 58.668 45.455 0.00 0.00 0.00 4.35
344 345 2.354403 GGCCCGTATAATAATCGTGCCT 60.354 50.000 0.00 0.00 42.74 4.75
345 346 2.004733 GGCCCGTATAATAATCGTGCC 58.995 52.381 0.00 0.00 40.23 5.01
346 347 1.657094 CGGCCCGTATAATAATCGTGC 59.343 52.381 0.00 0.00 0.00 5.34
347 348 2.664568 CACGGCCCGTATAATAATCGTG 59.335 50.000 9.25 0.00 38.32 4.35
348 349 2.927871 GCACGGCCCGTATAATAATCGT 60.928 50.000 9.25 0.00 38.32 3.73
349 350 1.657094 GCACGGCCCGTATAATAATCG 59.343 52.381 9.25 0.00 38.32 3.34
350 351 2.004733 GGCACGGCCCGTATAATAATC 58.995 52.381 9.25 0.00 44.06 1.75
351 352 2.103537 GGCACGGCCCGTATAATAAT 57.896 50.000 9.25 0.00 44.06 1.28
352 353 3.610637 GGCACGGCCCGTATAATAA 57.389 52.632 9.25 0.00 44.06 1.40
404 405 0.800631 GTTTACTAACTGGGCCGTGC 59.199 55.000 0.00 0.00 0.00 5.34
405 406 1.073177 CGTTTACTAACTGGGCCGTG 58.927 55.000 0.00 0.00 31.89 4.94
406 407 0.037046 CCGTTTACTAACTGGGCCGT 60.037 55.000 0.00 0.00 31.89 5.68
407 408 0.741927 CCCGTTTACTAACTGGGCCG 60.742 60.000 0.00 0.00 39.48 6.13
408 409 3.164026 CCCGTTTACTAACTGGGCC 57.836 57.895 0.00 0.00 39.48 5.80
410 411 0.741927 CGGCCCGTTTACTAACTGGG 60.742 60.000 0.00 11.19 44.21 4.45
411 412 0.247185 TCGGCCCGTTTACTAACTGG 59.753 55.000 1.63 0.00 40.48 4.00
412 413 1.337074 TGTCGGCCCGTTTACTAACTG 60.337 52.381 1.63 0.00 31.89 3.16
413 414 0.968405 TGTCGGCCCGTTTACTAACT 59.032 50.000 1.63 0.00 31.89 2.24
414 415 1.070821 GTGTCGGCCCGTTTACTAAC 58.929 55.000 1.63 0.00 0.00 2.34
415 416 0.388391 CGTGTCGGCCCGTTTACTAA 60.388 55.000 1.63 0.00 0.00 2.24
416 417 1.212490 CGTGTCGGCCCGTTTACTA 59.788 57.895 1.63 0.00 0.00 1.82
417 418 2.048877 CGTGTCGGCCCGTTTACT 60.049 61.111 1.63 0.00 0.00 2.24
418 419 1.955663 AACGTGTCGGCCCGTTTAC 60.956 57.895 3.96 0.00 44.16 2.01
419 420 1.955157 CAACGTGTCGGCCCGTTTA 60.955 57.895 7.74 0.00 44.16 2.01
420 421 3.273834 CAACGTGTCGGCCCGTTT 61.274 61.111 7.74 0.00 44.16 3.60
433 434 2.559330 GTGCTAAACGGGCCAACG 59.441 61.111 4.39 1.48 40.31 4.10
442 443 2.978018 GCAGCCCACCGTGCTAAAC 61.978 63.158 0.00 0.00 36.81 2.01
443 444 2.671619 GCAGCCCACCGTGCTAAA 60.672 61.111 0.00 0.00 36.81 1.85
444 445 1.904990 TATGCAGCCCACCGTGCTAA 61.905 55.000 0.00 0.00 40.54 3.09
445 446 1.904990 TTATGCAGCCCACCGTGCTA 61.905 55.000 0.00 0.00 40.54 3.49
446 447 2.556840 ATTATGCAGCCCACCGTGCT 62.557 55.000 0.00 0.00 40.54 4.40
447 448 1.666209 AATTATGCAGCCCACCGTGC 61.666 55.000 0.00 0.00 40.29 5.34
448 449 0.817013 AAATTATGCAGCCCACCGTG 59.183 50.000 0.00 0.00 0.00 4.94
449 450 1.555967 AAAATTATGCAGCCCACCGT 58.444 45.000 0.00 0.00 0.00 4.83
450 451 3.443976 GTTAAAATTATGCAGCCCACCG 58.556 45.455 0.00 0.00 0.00 4.94
451 452 3.450817 AGGTTAAAATTATGCAGCCCACC 59.549 43.478 0.00 0.00 0.00 4.61
452 453 4.081697 ACAGGTTAAAATTATGCAGCCCAC 60.082 41.667 0.00 0.00 0.00 4.61
453 454 4.093011 ACAGGTTAAAATTATGCAGCCCA 58.907 39.130 0.00 0.00 0.00 5.36
454 455 4.736126 ACAGGTTAAAATTATGCAGCCC 57.264 40.909 0.00 0.00 0.00 5.19
455 456 8.603181 CAAATAACAGGTTAAAATTATGCAGCC 58.397 33.333 0.00 0.00 0.00 4.85
456 457 9.364989 TCAAATAACAGGTTAAAATTATGCAGC 57.635 29.630 0.00 0.00 0.00 5.25
458 459 9.347934 CGTCAAATAACAGGTTAAAATTATGCA 57.652 29.630 0.00 0.00 0.00 3.96
459 460 8.318167 GCGTCAAATAACAGGTTAAAATTATGC 58.682 33.333 0.00 0.00 0.00 3.14
460 461 9.347934 TGCGTCAAATAACAGGTTAAAATTATG 57.652 29.630 0.00 0.00 0.00 1.90
461 462 9.349145 GTGCGTCAAATAACAGGTTAAAATTAT 57.651 29.630 0.00 0.00 0.00 1.28
462 463 8.569641 AGTGCGTCAAATAACAGGTTAAAATTA 58.430 29.630 0.00 0.00 0.00 1.40
463 464 7.381139 CAGTGCGTCAAATAACAGGTTAAAATT 59.619 33.333 0.00 0.00 0.00 1.82
464 465 6.861055 CAGTGCGTCAAATAACAGGTTAAAAT 59.139 34.615 0.00 0.00 0.00 1.82
465 466 6.038382 TCAGTGCGTCAAATAACAGGTTAAAA 59.962 34.615 0.00 0.00 0.00 1.52
466 467 5.527951 TCAGTGCGTCAAATAACAGGTTAAA 59.472 36.000 0.00 0.00 0.00 1.52
467 468 5.057819 TCAGTGCGTCAAATAACAGGTTAA 58.942 37.500 0.00 0.00 0.00 2.01
468 469 4.633175 TCAGTGCGTCAAATAACAGGTTA 58.367 39.130 0.00 0.00 0.00 2.85
469 470 3.472652 TCAGTGCGTCAAATAACAGGTT 58.527 40.909 0.00 0.00 0.00 3.50
470 471 3.067106 CTCAGTGCGTCAAATAACAGGT 58.933 45.455 0.00 0.00 0.00 4.00
471 472 2.159653 GCTCAGTGCGTCAAATAACAGG 60.160 50.000 0.00 0.00 0.00 4.00
472 473 3.109230 GCTCAGTGCGTCAAATAACAG 57.891 47.619 0.00 0.00 0.00 3.16
497 498 9.575868 TGACCCAACATGTAAAAATAGACTAAA 57.424 29.630 0.00 0.00 0.00 1.85
498 499 9.747898 ATGACCCAACATGTAAAAATAGACTAA 57.252 29.630 0.00 0.00 0.00 2.24
500 501 9.920946 ATATGACCCAACATGTAAAAATAGACT 57.079 29.630 0.00 0.00 0.00 3.24
548 549 1.135228 GCACGGCCCGATTATGTTTTT 60.135 47.619 11.71 0.00 0.00 1.94
549 550 0.454196 GCACGGCCCGATTATGTTTT 59.546 50.000 11.71 0.00 0.00 2.43
550 551 1.711060 CGCACGGCCCGATTATGTTT 61.711 55.000 11.71 0.00 0.00 2.83
551 552 2.177580 CGCACGGCCCGATTATGTT 61.178 57.895 11.71 0.00 0.00 2.71
552 553 2.587753 CGCACGGCCCGATTATGT 60.588 61.111 11.71 0.00 0.00 2.29
553 554 2.587753 ACGCACGGCCCGATTATG 60.588 61.111 11.71 0.00 0.00 1.90
554 555 2.587753 CACGCACGGCCCGATTAT 60.588 61.111 11.71 0.00 0.00 1.28
710 711 2.624838 CAACTATAGCTGGCCAAATGGG 59.375 50.000 7.01 0.00 40.85 4.00
711 712 2.624838 CCAACTATAGCTGGCCAAATGG 59.375 50.000 7.01 5.55 38.53 3.16
712 713 2.624838 CCCAACTATAGCTGGCCAAATG 59.375 50.000 15.62 0.00 30.11 2.32
713 714 2.513738 TCCCAACTATAGCTGGCCAAAT 59.486 45.455 15.62 3.30 30.11 2.32
714 715 1.919654 TCCCAACTATAGCTGGCCAAA 59.080 47.619 15.62 0.00 30.11 3.28
715 716 1.490490 CTCCCAACTATAGCTGGCCAA 59.510 52.381 15.62 0.00 30.11 4.52
716 717 1.131638 CTCCCAACTATAGCTGGCCA 58.868 55.000 15.62 4.71 30.11 5.36
717 718 0.398318 CCTCCCAACTATAGCTGGCC 59.602 60.000 15.62 0.00 30.11 5.36
718 719 1.070914 GACCTCCCAACTATAGCTGGC 59.929 57.143 15.62 0.00 30.11 4.85
719 720 2.683768 AGACCTCCCAACTATAGCTGG 58.316 52.381 14.32 14.32 0.00 4.85
720 721 4.762289 AAAGACCTCCCAACTATAGCTG 57.238 45.455 0.00 0.00 0.00 4.24
721 722 5.627040 CGAAAAAGACCTCCCAACTATAGCT 60.627 44.000 0.00 0.00 0.00 3.32
722 723 4.571176 CGAAAAAGACCTCCCAACTATAGC 59.429 45.833 0.00 0.00 0.00 2.97
723 724 5.731591 ACGAAAAAGACCTCCCAACTATAG 58.268 41.667 0.00 0.00 0.00 1.31
739 740 3.568443 AGGGCCTCCTTTTAACGAAAAA 58.432 40.909 0.00 0.00 41.56 1.94
747 748 5.012768 CCGATCTATTTAGGGCCTCCTTTTA 59.987 44.000 10.74 0.00 41.56 1.52
824 833 2.819019 TCGGAACTGTAATCACGTGGTA 59.181 45.455 17.00 5.73 0.00 3.25
872 885 1.135024 GTCTCTCTTCTCCTGCTGCAG 60.135 57.143 22.44 22.44 0.00 4.41
944 967 2.202703 GTATTGACGGGCGCTCGT 60.203 61.111 38.91 38.91 46.83 4.18
947 970 2.186903 CTGGTATTGACGGGCGCT 59.813 61.111 7.64 0.00 0.00 5.92
964 987 4.162690 AGGAATCGCAGCGGGGAC 62.163 66.667 16.42 3.62 38.96 4.46
985 1008 1.759881 CCATGGGGAGCCAGAGATC 59.240 63.158 2.85 0.00 35.59 2.75
988 1011 2.621517 GAAGCCATGGGGAGCCAGAG 62.622 65.000 15.13 0.00 35.59 3.35
1045 1068 1.127951 CAAAAACTATCCGCGCGAGTT 59.872 47.619 34.63 28.55 34.92 3.01
1102 1125 2.093128 ACGAATACGGCTGATCCCTTTT 60.093 45.455 0.00 0.00 44.46 2.27
1104 1127 1.120530 ACGAATACGGCTGATCCCTT 58.879 50.000 0.00 0.00 44.46 3.95
1105 1128 1.120530 AACGAATACGGCTGATCCCT 58.879 50.000 0.00 0.00 44.46 4.20
1106 1129 1.217882 CAACGAATACGGCTGATCCC 58.782 55.000 0.00 0.00 44.46 3.85
1107 1130 1.935933 ACAACGAATACGGCTGATCC 58.064 50.000 0.00 0.00 44.46 3.36
1210 1239 1.202830 TCGGATAGAGGAGGAGAGTGC 60.203 57.143 0.00 0.00 0.00 4.40
1211 1240 2.778299 CTCGGATAGAGGAGGAGAGTG 58.222 57.143 0.00 0.00 43.20 3.51
1212 1241 1.073284 GCTCGGATAGAGGAGGAGAGT 59.927 57.143 0.00 0.00 46.91 3.24
1275 1325 6.870965 AGATATCACAAGTCGAATCTAATGGC 59.129 38.462 5.32 0.00 0.00 4.40
1288 1338 5.674052 AGCTCTTCACAGATATCACAAGT 57.326 39.130 5.32 0.00 0.00 3.16
1311 1365 2.646175 TTTAGCGCCGAGGAGCAGT 61.646 57.895 19.38 2.93 43.31 4.40
1382 1436 2.242043 CAGCACAGAAACCCAATCCTT 58.758 47.619 0.00 0.00 0.00 3.36
1406 1460 2.350522 CAGCCATTAGACACACAGGAC 58.649 52.381 0.00 0.00 0.00 3.85
1434 1488 5.350365 CCAATATCAAGAGAAACCGAAACGA 59.650 40.000 0.00 0.00 0.00 3.85
1435 1489 5.350365 TCCAATATCAAGAGAAACCGAAACG 59.650 40.000 0.00 0.00 0.00 3.60
1436 1490 6.737254 TCCAATATCAAGAGAAACCGAAAC 57.263 37.500 0.00 0.00 0.00 2.78
1455 1509 9.258629 AGACAAAGAAATCCAATATCAATCCAA 57.741 29.630 0.00 0.00 0.00 3.53
1456 1510 8.827832 AGACAAAGAAATCCAATATCAATCCA 57.172 30.769 0.00 0.00 0.00 3.41
1457 1511 9.741647 GAAGACAAAGAAATCCAATATCAATCC 57.258 33.333 0.00 0.00 0.00 3.01
1476 1530 8.757789 CAACGCGGTATATATAAAAGAAGACAA 58.242 33.333 12.47 0.00 0.00 3.18
1483 1537 9.365311 CAAAACTCAACGCGGTATATATAAAAG 57.635 33.333 12.47 0.00 0.00 2.27
1499 1553 8.034804 ACCAAATGGATATAAGCAAAACTCAAC 58.965 33.333 6.42 0.00 38.94 3.18
1514 1568 9.914834 ACTAGTAGCAAATTTACCAAATGGATA 57.085 29.630 6.42 0.00 38.94 2.59
1605 1662 2.273557 CCGTTTATTGGACTACCACGG 58.726 52.381 0.00 0.00 46.80 4.94
1608 1665 6.374894 CCATTAAACCGTTTATTGGACTACCA 59.625 38.462 26.87 3.97 43.96 3.25
1609 1666 6.375174 ACCATTAAACCGTTTATTGGACTACC 59.625 38.462 32.53 0.00 43.96 3.18
1631 1688 2.859165 AGGAATGCTTTTCGAGACCA 57.141 45.000 0.00 0.00 0.00 4.02
1637 1694 5.095490 GGTTCAACATAGGAATGCTTTTCG 58.905 41.667 0.00 0.00 36.50 3.46
1671 1728 6.348786 GCATAACCGCATAACTGATGATCATT 60.349 38.462 10.14 0.00 37.82 2.57
1710 1767 3.130450 TGGTTGATGGGAGTGGGAATAT 58.870 45.455 0.00 0.00 0.00 1.28
1713 1770 1.284785 GATGGTTGATGGGAGTGGGAA 59.715 52.381 0.00 0.00 0.00 3.97
1760 1817 4.319177 CAAGTTTCTGCTTAGGTAGTGCT 58.681 43.478 0.00 0.00 0.00 4.40
1761 1818 3.437049 CCAAGTTTCTGCTTAGGTAGTGC 59.563 47.826 0.00 0.00 0.00 4.40
1841 1898 3.120321 TCGGTATGCTTTGTTGAGTGT 57.880 42.857 0.00 0.00 0.00 3.55
1863 1920 7.478520 ACAATAGAAGTTATACCGATGTTGC 57.521 36.000 0.00 0.00 0.00 4.17
1883 1940 9.614792 GTGGATGTTATTCTAGGTTCTAACAAT 57.385 33.333 9.68 0.00 37.55 2.71
1884 1941 8.044908 GGTGGATGTTATTCTAGGTTCTAACAA 58.955 37.037 9.68 0.00 37.55 2.83
1900 1957 2.917713 ATTGCCCTTGGTGGATGTTA 57.082 45.000 0.00 0.00 38.35 2.41
1901 1958 2.917713 TATTGCCCTTGGTGGATGTT 57.082 45.000 0.00 0.00 38.35 2.71
2037 2097 6.963322 AGTAAAGAGGCCTGAAAGTATGATT 58.037 36.000 12.00 0.00 0.00 2.57
2060 2120 7.365741 AGTGATGACTTATTCTGCAACAAAAG 58.634 34.615 0.00 0.00 0.00 2.27
2154 2221 8.121708 GTGCTTCTTAGATGATCAAATGAGTTC 58.878 37.037 0.00 0.00 0.00 3.01
2373 2440 3.308595 CGTACTGCTCAAACTGTTGAACA 59.691 43.478 0.00 0.00 43.18 3.18
2398 2465 1.629861 TGGTGAATGAGTGCCAGATCA 59.370 47.619 0.00 0.00 0.00 2.92
2732 2799 8.628630 TTGAATACAATCATTTGACTGGTACA 57.371 30.769 0.00 0.00 36.64 2.90
2750 2817 5.788531 CGAAAATTGTCGTGGTCTTGAATAC 59.211 40.000 9.99 0.00 36.26 1.89
2860 2927 7.358066 CCAATATGTTGTGATATGCTGACTTC 58.642 38.462 1.26 0.00 33.36 3.01
3562 3637 7.721399 ACACAAAGATCTGGAAAGAACTTACAT 59.279 33.333 0.00 0.00 31.96 2.29
3565 3640 7.054124 ACACACAAAGATCTGGAAAGAACTTA 58.946 34.615 0.00 0.00 31.96 2.24
3951 4030 5.945784 ACAGCCAGAATAACAAATGCTCTAA 59.054 36.000 0.00 0.00 0.00 2.10
3987 4066 5.710513 AGCAGCAAGTATCAAACATCAAA 57.289 34.783 0.00 0.00 0.00 2.69
4178 4257 9.849166 TTGGAAACGATAGGAAAAATCAATAAC 57.151 29.630 0.00 0.00 43.77 1.89
4360 4439 1.664659 CTCATCGCAGGAAAGCAGAAG 59.335 52.381 0.00 0.00 0.00 2.85
4401 4480 3.427528 GCATGCACTTGACAACATCTTTG 59.572 43.478 14.21 0.00 0.00 2.77
4730 4810 2.289694 CCTCTAACCCTGCGGAATATGG 60.290 54.545 0.00 0.00 0.00 2.74
4732 4812 1.348036 GCCTCTAACCCTGCGGAATAT 59.652 52.381 0.00 0.00 0.00 1.28
4733 4813 0.756903 GCCTCTAACCCTGCGGAATA 59.243 55.000 0.00 0.00 0.00 1.75
4875 4955 1.591703 GTCTGGGTCATGCGTCTCA 59.408 57.895 0.00 0.00 0.00 3.27
4985 5065 5.278169 GCTCCAGTGCCAAATGATAACATAG 60.278 44.000 0.00 0.00 35.50 2.23
5024 5106 4.571984 TGGCATAGAAATTCAGATCACACG 59.428 41.667 0.00 0.00 0.00 4.49
5115 5197 6.380079 ACAAAGTAATCCATCTTCTCCACT 57.620 37.500 0.00 0.00 0.00 4.00
5157 5239 2.884207 CCGCGGTCGTCTTTAGGC 60.884 66.667 19.50 0.00 0.00 3.93
5171 5253 2.440065 TCCATTGCCCATCACCGC 60.440 61.111 0.00 0.00 0.00 5.68
5174 5256 1.325355 CCATCTCCATTGCCCATCAC 58.675 55.000 0.00 0.00 0.00 3.06
5182 5264 5.787380 TGAGATTATCGACCATCTCCATTG 58.213 41.667 23.62 0.00 43.38 2.82
5224 5306 1.226802 CAGTCGTCTCCATCCGCAG 60.227 63.158 0.00 0.00 0.00 5.18
5237 5319 2.343101 TGGAACGAAATAAGCCAGTCG 58.657 47.619 0.00 0.00 39.37 4.18
5241 5323 3.118702 TCGGTATGGAACGAAATAAGCCA 60.119 43.478 0.00 0.00 36.01 4.75
5263 5345 8.958119 ATGTACATATCGTTCCAACATTAACT 57.042 30.769 6.56 0.00 0.00 2.24
5267 5349 7.766738 TGTGTATGTACATATCGTTCCAACATT 59.233 33.333 18.27 0.00 38.63 2.71
5336 5419 3.029570 AGGAACGGAGGGAGTACATTAC 58.970 50.000 0.00 0.00 0.00 1.89
5339 5422 3.393426 TTAGGAACGGAGGGAGTACAT 57.607 47.619 0.00 0.00 0.00 2.29
5340 5423 2.905415 TTAGGAACGGAGGGAGTACA 57.095 50.000 0.00 0.00 0.00 2.90
5341 5424 6.416631 AATATTTAGGAACGGAGGGAGTAC 57.583 41.667 0.00 0.00 0.00 2.73
5342 5425 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
5343 5426 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
5344 5427 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
5345 5428 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
5346 5429 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
5347 5430 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
5348 5431 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
5349 5432 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
5350 5433 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
5378 5461 6.282167 TCCGTATGTAGTCACTTGTTGAAAA 58.718 36.000 0.00 0.00 35.39 2.29
5379 5462 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
5380 5463 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
5381 5464 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
5382 5465 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
5383 5466 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
5384 5467 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
5385 5468 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
5386 5469 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
5387 5470 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
5388 5471 6.534079 ACTTATTTTGCTCCGTATGTAGTCAC 59.466 38.462 0.00 0.00 0.00 3.67
5389 5472 6.533723 CACTTATTTTGCTCCGTATGTAGTCA 59.466 38.462 0.00 0.00 0.00 3.41
5390 5473 6.755141 TCACTTATTTTGCTCCGTATGTAGTC 59.245 38.462 0.00 0.00 0.00 2.59
5391 5474 6.636705 TCACTTATTTTGCTCCGTATGTAGT 58.363 36.000 0.00 0.00 0.00 2.73
5392 5475 7.534085 TTCACTTATTTTGCTCCGTATGTAG 57.466 36.000 0.00 0.00 0.00 2.74
5393 5476 9.772973 ATATTCACTTATTTTGCTCCGTATGTA 57.227 29.630 0.00 0.00 0.00 2.29
5394 5477 8.677148 ATATTCACTTATTTTGCTCCGTATGT 57.323 30.769 0.00 0.00 0.00 2.29
5396 5479 9.772973 TGTATATTCACTTATTTTGCTCCGTAT 57.227 29.630 0.00 0.00 0.00 3.06
5397 5480 9.037737 GTGTATATTCACTTATTTTGCTCCGTA 57.962 33.333 5.30 0.00 35.68 4.02
5398 5481 7.769044 AGTGTATATTCACTTATTTTGCTCCGT 59.231 33.333 9.03 0.00 44.92 4.69
5399 5482 8.142994 AGTGTATATTCACTTATTTTGCTCCG 57.857 34.615 9.03 0.00 44.92 4.63
5400 5483 9.331282 AGAGTGTATATTCACTTATTTTGCTCC 57.669 33.333 15.24 0.62 46.81 4.70
5430 5513 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
5432 5515 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
5433 5516 8.105197 ACTACCACATACGGATGTATATAGACA 58.895 37.037 22.62 2.07 44.82 3.41
5434 5517 8.503458 ACTACCACATACGGATGTATATAGAC 57.497 38.462 22.62 0.00 44.82 2.59
5435 5518 8.546322 AGACTACCACATACGGATGTATATAGA 58.454 37.037 22.62 5.04 44.82 1.98
5436 5519 8.734218 AGACTACCACATACGGATGTATATAG 57.266 38.462 14.23 16.35 44.82 1.31
5438 5521 9.696572 AATAGACTACCACATACGGATGTATAT 57.303 33.333 14.23 4.37 44.82 0.86
5439 5522 9.524496 AAATAGACTACCACATACGGATGTATA 57.476 33.333 14.23 8.27 44.82 1.47
5440 5523 8.304596 CAAATAGACTACCACATACGGATGTAT 58.695 37.037 14.23 7.46 44.82 2.29
5441 5524 7.503230 TCAAATAGACTACCACATACGGATGTA 59.497 37.037 14.23 0.00 44.82 2.29
5443 5526 6.745116 TCAAATAGACTACCACATACGGATG 58.255 40.000 5.94 5.94 39.16 3.51
5444 5527 6.971726 TCAAATAGACTACCACATACGGAT 57.028 37.500 0.00 0.00 0.00 4.18
5445 5528 6.778834 TTCAAATAGACTACCACATACGGA 57.221 37.500 0.00 0.00 0.00 4.69
5446 5529 7.434492 AGATTCAAATAGACTACCACATACGG 58.566 38.462 0.00 0.00 0.00 4.02
5447 5530 8.353684 AGAGATTCAAATAGACTACCACATACG 58.646 37.037 0.00 0.00 0.00 3.06
5470 5553 9.262472 CGTTCCGAAATATTTGTCTTTTTAGAG 57.738 33.333 5.17 0.00 0.00 2.43
5471 5554 8.231837 CCGTTCCGAAATATTTGTCTTTTTAGA 58.768 33.333 5.17 0.00 0.00 2.10
5472 5555 8.231837 TCCGTTCCGAAATATTTGTCTTTTTAG 58.768 33.333 5.17 0.00 0.00 1.85
5473 5556 8.097078 TCCGTTCCGAAATATTTGTCTTTTTA 57.903 30.769 5.17 0.00 0.00 1.52
5474 5557 6.972722 TCCGTTCCGAAATATTTGTCTTTTT 58.027 32.000 5.17 0.00 0.00 1.94
5475 5558 6.349033 CCTCCGTTCCGAAATATTTGTCTTTT 60.349 38.462 5.17 0.00 0.00 2.27
5476 5559 5.123344 CCTCCGTTCCGAAATATTTGTCTTT 59.877 40.000 5.17 0.00 0.00 2.52
5477 5560 4.634443 CCTCCGTTCCGAAATATTTGTCTT 59.366 41.667 5.17 0.00 0.00 3.01
5478 5561 4.081309 TCCTCCGTTCCGAAATATTTGTCT 60.081 41.667 5.17 0.00 0.00 3.41
5479 5562 4.186159 TCCTCCGTTCCGAAATATTTGTC 58.814 43.478 5.17 0.00 0.00 3.18
5480 5563 4.189231 CTCCTCCGTTCCGAAATATTTGT 58.811 43.478 5.17 0.00 0.00 2.83
5481 5564 4.189231 ACTCCTCCGTTCCGAAATATTTG 58.811 43.478 5.17 0.00 0.00 2.32
5482 5565 4.482952 ACTCCTCCGTTCCGAAATATTT 57.517 40.909 0.00 0.00 0.00 1.40
5483 5566 5.803237 ATACTCCTCCGTTCCGAAATATT 57.197 39.130 0.00 0.00 0.00 1.28
5484 5567 6.627508 GCATATACTCCTCCGTTCCGAAATAT 60.628 42.308 0.00 0.00 0.00 1.28
5485 5568 5.336213 GCATATACTCCTCCGTTCCGAAATA 60.336 44.000 0.00 0.00 0.00 1.40
5486 5569 4.560919 GCATATACTCCTCCGTTCCGAAAT 60.561 45.833 0.00 0.00 0.00 2.17
5487 5570 3.243636 GCATATACTCCTCCGTTCCGAAA 60.244 47.826 0.00 0.00 0.00 3.46
5488 5571 2.295349 GCATATACTCCTCCGTTCCGAA 59.705 50.000 0.00 0.00 0.00 4.30
5489 5572 1.884579 GCATATACTCCTCCGTTCCGA 59.115 52.381 0.00 0.00 0.00 4.55
5490 5573 1.887198 AGCATATACTCCTCCGTTCCG 59.113 52.381 0.00 0.00 0.00 4.30
5491 5574 4.678309 GCATAGCATATACTCCTCCGTTCC 60.678 50.000 0.00 0.00 0.00 3.62
5492 5575 4.082190 TGCATAGCATATACTCCTCCGTTC 60.082 45.833 0.00 0.00 31.71 3.95
5493 5576 3.832490 TGCATAGCATATACTCCTCCGTT 59.168 43.478 0.00 0.00 31.71 4.44
5494 5577 3.431415 TGCATAGCATATACTCCTCCGT 58.569 45.455 0.00 0.00 31.71 4.69
5514 5597 4.423732 GCCAACTTTATACCAGCAACATG 58.576 43.478 0.00 0.00 0.00 3.21
5520 5603 2.999331 TCTGGCCAACTTTATACCAGC 58.001 47.619 7.01 0.00 46.10 4.85
5533 5616 2.294791 CACGGTGTTTATTTTCTGGCCA 59.705 45.455 4.71 4.71 0.00 5.36
5552 5635 2.048503 CTCCACCCGTTCGGACAC 60.049 66.667 13.08 0.00 34.64 3.67
5554 5637 4.754667 GCCTCCACCCGTTCGGAC 62.755 72.222 13.08 0.00 34.64 4.79
5609 5692 3.818387 CAATGATGCTGCGATTGATACC 58.182 45.455 11.35 0.00 30.03 2.73
5618 5701 6.229901 CAAGAATTGTGCAATGATGCTGCG 62.230 45.833 2.22 0.00 45.23 5.18
5619 5702 3.062099 CAAGAATTGTGCAATGATGCTGC 59.938 43.478 2.22 0.00 45.23 5.25
5620 5703 4.840401 CAAGAATTGTGCAATGATGCTG 57.160 40.909 2.22 0.00 45.23 4.41
5640 5723 1.105457 GCTATCATTTGCCAGGCACA 58.895 50.000 15.89 8.63 38.71 4.57
5641 5724 1.066605 CTGCTATCATTTGCCAGGCAC 59.933 52.381 15.89 0.00 38.71 5.01
5642 5725 1.395635 CTGCTATCATTTGCCAGGCA 58.604 50.000 11.22 11.22 36.47 4.75
5644 5727 1.325355 CCCTGCTATCATTTGCCAGG 58.675 55.000 0.00 0.00 0.00 4.45
5655 5738 3.073062 ACTTTGTTGAGACACCCTGCTAT 59.927 43.478 0.00 0.00 34.98 2.97
5658 5741 1.680338 ACTTTGTTGAGACACCCTGC 58.320 50.000 0.00 0.00 34.98 4.85
5670 5753 7.443259 ACCTGTAATTACGCATAACTTTGTT 57.557 32.000 10.92 0.00 0.00 2.83
5711 5796 4.539726 TCATTAGCCAGCCATGAGAATTT 58.460 39.130 0.00 0.00 0.00 1.82
5719 5804 6.317663 TCACATATATCATTAGCCAGCCAT 57.682 37.500 0.00 0.00 0.00 4.40
5760 5847 9.950680 AAACACTGAAACATGTCAAAACTATAG 57.049 29.630 0.00 0.00 0.00 1.31
5783 5870 6.481954 AATAGTGTTCAGATTCACGGAAAC 57.518 37.500 0.00 0.00 39.25 2.78
5811 5898 4.576053 CCACACACACATACATATTCAGGG 59.424 45.833 0.00 0.00 0.00 4.45
5812 5899 5.185454 ACCACACACACATACATATTCAGG 58.815 41.667 0.00 0.00 0.00 3.86
5814 5901 4.867608 CGACCACACACACATACATATTCA 59.132 41.667 0.00 0.00 0.00 2.57
5823 5910 1.826709 TGGACGACCACACACACAT 59.173 52.632 1.37 0.00 41.77 3.21
5836 5925 5.334105 GGTTTCATGATATTTCCGATGGACG 60.334 44.000 0.00 0.00 42.18 4.79
5841 5930 5.072741 CCCAGGTTTCATGATATTTCCGAT 58.927 41.667 0.00 0.00 0.00 4.18
5845 5934 4.038402 CAGGCCCAGGTTTCATGATATTTC 59.962 45.833 0.00 0.00 0.00 2.17
5860 5949 1.180029 CTTTCATGGTTCAGGCCCAG 58.820 55.000 0.00 0.00 34.92 4.45
5885 5974 2.773993 ACCGGAAACACATATTCGGT 57.226 45.000 9.46 0.00 32.63 4.69
5905 5994 2.427812 TCATCCGTGTAAGCATCGGTAA 59.572 45.455 0.00 0.00 43.94 2.85
5930 6021 3.562557 GCGGAACTTAAAACAGGTCTTCA 59.437 43.478 0.00 0.00 30.40 3.02
5944 6035 4.759693 TGTTAGAACATTGATGCGGAACTT 59.240 37.500 0.00 0.00 33.17 2.66
5945 6036 4.323417 TGTTAGAACATTGATGCGGAACT 58.677 39.130 0.00 0.00 33.17 3.01
5961 6052 2.809446 CATCAAGCGGTCGATGTTAGA 58.191 47.619 7.38 0.00 35.37 2.10
5992 6083 5.944049 TTACGCTTAAGATTGACGTCATC 57.056 39.130 20.80 17.67 38.12 2.92
5996 6087 5.680229 CGACTATTACGCTTAAGATTGACGT 59.320 40.000 6.67 8.41 40.53 4.34
6022 6113 0.108992 CTTGTAAGCCCTACGTCGCA 60.109 55.000 0.00 0.00 32.65 5.10
6050 6141 1.139455 CCCAATTGATCAACCATGGCC 59.861 52.381 22.49 0.00 0.00 5.36
6083 6174 6.313905 GCAACTGCTATGTTAGTGTATCACTT 59.686 38.462 7.70 0.00 40.70 3.16
6124 6222 5.756347 TGTAGAACAAGTAAATCGTGTGCTT 59.244 36.000 0.43 0.00 40.60 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.