AutoCloner

Multiple sequence alignment - TraesCS2B01G317500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G317500	chr2B	100.000	3905	0	0	1	3905	453028977	453032881	0.000000e+00	7212
1	TraesCS2B01G317500	chr2B	85.438	673	32	23	3078	3735	768616909	768617530	1.180000e-179	640
2	TraesCS2B01G317500	chr2A	90.572	3023	166	51	1	2948	516429428	516432406	0.000000e+00	3893
3	TraesCS2B01G317500	chr2A	90.719	862	44	10	2985	3810	642436683	642435822	0.000000e+00	1116
4	TraesCS2B01G317500	chr2A	94.898	98	3	1	3808	3905	516432527	516432622	6.760000e-33	152
5	TraesCS2B01G317500	chr2A	97.674	43	1	0	2946	2988	516432487	516432529	1.500000e-09	75
6	TraesCS2B01G317500	chr2D	93.894	1212	56	5	1785	2988	382179373	382180574	0.000000e+00	1812
7	TraesCS2B01G317500	chr2D	93.994	999	38	7	1	981	382177511	382178505	0.000000e+00	1493
8	TraesCS2B01G317500	chr2D	93.078	809	42	11	981	1784	382178546	382179345	0.000000e+00	1171
9	TraesCS2B01G317500	chr2D	87.370	578	32	14	3160	3735	627170182	627170720	3.310000e-175	625
10	TraesCS2B01G317500	chr7B	98.075	831	16	0	2985	3815	677872725	677873555	0.000000e+00	1447
11	TraesCS2B01G317500	chr1B	95.307	831	18	3	2985	3815	233947634	233948443	0.000000e+00	1299
12	TraesCS2B01G317500	chr1B	90.859	361	31	2	3446	3805	512870375	512870016	2.110000e-132	483
13	TraesCS2B01G317500	chr1B	93.064	173	11	1	3279	3450	512874750	512874578	6.480000e-63	252
14	TraesCS2B01G317500	chr1A	91.637	837	55	9	2985	3807	83830479	83831314	0.000000e+00	1144
15	TraesCS2B01G317500	chr1A	91.067	862	35	11	2985	3810	576606793	576607648	0.000000e+00	1127
16	TraesCS2B01G317500	chr6A	89.667	842	72	9	2982	3810	484554272	484555111	0.000000e+00	1059
17	TraesCS2B01G317500	chr6A	95.851	241	10	0	2988	3228	393237365	393237125	1.320000e-104	390
18	TraesCS2B01G317500	chr7A	82.402	841	84	34	2994	3817	27958605	27957812	0.000000e+00	675
19	TraesCS2B01G317500	chr5D	80.322	869	109	24	2985	3802	455830719	455829862	5.580000e-168	601
20	TraesCS2B01G317500	chr5D	83.362	583	60	27	2990	3564	70388244	70388797	4.500000e-139	505
21	TraesCS2B01G317500	chr5B	84.462	502	54	11	3329	3809	44220026	44220524	1.270000e-129	473

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G317500	chr2B	453028977	453032881	3904	False	7212.000000	7212	100.000000	1	3905	1	chr2B.!!$F1	3904
1	TraesCS2B01G317500	chr2B	768616909	768617530	621	False	640.000000	640	85.438000	3078	3735	1	chr2B.!!$F2	657
2	TraesCS2B01G317500	chr2A	516429428	516432622	3194	False	1373.333333	3893	94.381333	1	3905	3	chr2A.!!$F1	3904
3	TraesCS2B01G317500	chr2A	642435822	642436683	861	True	1116.000000	1116	90.719000	2985	3810	1	chr2A.!!$R1	825
4	TraesCS2B01G317500	chr2D	382177511	382180574	3063	False	1492.000000	1812	93.655333	1	2988	3	chr2D.!!$F2	2987
5	TraesCS2B01G317500	chr2D	627170182	627170720	538	False	625.000000	625	87.370000	3160	3735	1	chr2D.!!$F1	575
6	TraesCS2B01G317500	chr7B	677872725	677873555	830	False	1447.000000	1447	98.075000	2985	3815	1	chr7B.!!$F1	830
7	TraesCS2B01G317500	chr1B	233947634	233948443	809	False	1299.000000	1299	95.307000	2985	3815	1	chr1B.!!$F1	830
8	TraesCS2B01G317500	chr1A	83830479	83831314	835	False	1144.000000	1144	91.637000	2985	3807	1	chr1A.!!$F1	822
9	TraesCS2B01G317500	chr1A	576606793	576607648	855	False	1127.000000	1127	91.067000	2985	3810	1	chr1A.!!$F2	825
10	TraesCS2B01G317500	chr6A	484554272	484555111	839	False	1059.000000	1059	89.667000	2982	3810	1	chr6A.!!$F1	828
11	TraesCS2B01G317500	chr7A	27957812	27958605	793	True	675.000000	675	82.402000	2994	3817	1	chr7A.!!$R1	823
12	TraesCS2B01G317500	chr5D	455829862	455830719	857	True	601.000000	601	80.322000	2985	3802	1	chr5D.!!$R1	817
13	TraesCS2B01G317500	chr5D	70388244	70388797	553	False	505.000000	505	83.362000	2990	3564	1	chr5D.!!$F1	574

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
921	949	0.620556	TCTTTCCTGCAGGGATGTCC	59.379	55.0	32.23	0.0	44.66	4.02	F
1229	1305	0.463204	TGAGATGGCTCTGCTGTAGC	59.537	55.0	0.00	0.0	41.84	3.58	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2639	2765	0.103572	GTAACCGCCTTCGCCATAGA	59.896	55.0	0.0	0.0	0.00	1.98	R
2953	3162	1.527034	AGCAGTAGCAACCACACATG	58.473	50.0	0.0	0.0	45.49	3.21	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
53	54	3.124297	GGAAAAGTCTCTGACATGCTTCG	59.876	47.826	0.00	0.00	34.60	3.79
103	104	7.386025	TCATGCTTCTGTATAATCATGTAGCAC	59.614	37.037	0.00	0.00	38.72	4.40
260	263	4.576053	TGTTTATCAGCCATGGAAGAATCG	59.424	41.667	18.40	0.00	0.00	3.34
261	264	1.602311	ATCAGCCATGGAAGAATCGC	58.398	50.000	18.40	0.00	0.00	4.58
539	542	6.969366	CAAGTATGTCTTGGTTCAATGAACA	58.031	36.000	25.14	10.57	46.85	3.18
569	572	6.071952	ACGACATGTTTGCCTCTTTTATCAAT	60.072	34.615	0.00	0.00	0.00	2.57
660	663	9.702494	ATTCCTCAGATGAAAAGAAAATTGTTC	57.298	29.630	0.00	0.00	0.00	3.18
673	676	9.918630	AAAGAAAATTGTTCTAGACATGAATGG	57.081	29.630	0.00	0.00	38.26	3.16
751	769	4.324424	CAAAGTTGCCTTGTGCCG	57.676	55.556	0.00	0.00	40.16	5.69
871	891	7.607991	AGTGATTTTGTCCCTACTTCTGTATTG	59.392	37.037	0.00	0.00	0.00	1.90
879	899	7.233962	TGTCCCTACTTCTGTATTGTTAGTTGA	59.766	37.037	0.00	0.00	0.00	3.18
918	946	4.952335	ACTTTAATCTTTCCTGCAGGGATG	59.048	41.667	32.23	25.33	44.66	3.51
919	947	4.591321	TTAATCTTTCCTGCAGGGATGT	57.409	40.909	32.23	17.58	44.66	3.06
920	948	2.725221	ATCTTTCCTGCAGGGATGTC	57.275	50.000	32.23	0.00	44.66	3.06
921	949	0.620556	TCTTTCCTGCAGGGATGTCC	59.379	55.000	32.23	0.00	44.66	4.02
940	968	1.625818	CCCTTCTCCTAAGCACACTGT	59.374	52.381	0.00	0.00	0.00	3.55
968	996	1.089920	GTAAGCACATGAGTGGCTGG	58.910	55.000	0.00	0.00	45.98	4.85
1017	1086	9.674824	CTCATTATCATGCCAACTAATTTCTTC	57.325	33.333	0.00	0.00	0.00	2.87
1041	1110	4.682778	AGCAGGTGACAGTAACTTGTAA	57.317	40.909	2.19	0.00	0.00	2.41
1159	1229	9.602568	TTAGTGATAAACTGAACGGCATAAATA	57.397	29.630	0.00	0.00	40.26	1.40
1184	1254	7.651027	ATCAGAAATTTAGATTCAACCCCAG	57.349	36.000	0.00	0.00	0.00	4.45
1201	1271	2.093764	CCCAGCCACAAACACAGAAAAA	60.094	45.455	0.00	0.00	0.00	1.94
1224	1300	3.036819	TGATTACTGAGATGGCTCTGCT	58.963	45.455	0.00	0.00	42.06	4.24
1225	1301	2.975732	TTACTGAGATGGCTCTGCTG	57.024	50.000	0.00	0.00	42.06	4.41
1226	1302	1.857965	TACTGAGATGGCTCTGCTGT	58.142	50.000	0.00	0.00	42.06	4.40
1227	1303	1.857965	ACTGAGATGGCTCTGCTGTA	58.142	50.000	0.00	0.00	42.06	2.74
1228	1304	1.755959	ACTGAGATGGCTCTGCTGTAG	59.244	52.381	0.00	0.00	42.06	2.74
1229	1305	0.463204	TGAGATGGCTCTGCTGTAGC	59.537	55.000	0.00	0.00	41.84	3.58
1231	1307	4.366024	TGAGATGGCTCTGCTGTAGCAC	62.366	54.545	1.76	0.00	46.68	4.40
1465	1545	7.123547	TCTCTCTCTCCCAAAGAAAGATCTTAC	59.876	40.741	8.75	0.00	45.19	2.34
1512	1593	8.484641	AGAATATTCTGTATCGCATGGTATTG	57.515	34.615	17.26	0.00	35.89	1.90
1604	1693	9.646522	AATGGTCTATACCTGCATCTTAATTTT	57.353	29.630	0.00	0.00	46.91	1.82
1672	1761	6.089417	GTGTTGGGAATGAGCTTTTATTTTCG	59.911	38.462	0.00	0.00	0.00	3.46
1712	1801	2.276732	ATGGGTGTGCTATGTATGGC	57.723	50.000	0.00	0.00	34.56	4.40
1723	1812	3.068165	GCTATGTATGGCTTGTTTTCCCC	59.932	47.826	0.00	0.00	0.00	4.81
1767	1856	4.991056	ACAGTTGACAGTTGTAGTGCATAG	59.009	41.667	0.00	0.00	0.00	2.23
1776	1865	3.526931	TGTAGTGCATAGACCTGCTTC	57.473	47.619	0.00	0.00	42.75	3.86
1789	1905	6.992063	AGACCTGCTTCAGTTTTGTATATG	57.008	37.500	0.00	0.00	0.00	1.78
1827	1943	1.786441	ACCCATCCTTTCAACAAGGGA	59.214	47.619	0.00	0.00	41.81	4.20
1838	1954	7.508977	TCCTTTCAACAAGGGAAGTGATATTTT	59.491	33.333	0.76	0.00	34.86	1.82
1839	1955	8.150296	CCTTTCAACAAGGGAAGTGATATTTTT	58.850	33.333	0.00	0.00	29.76	1.94
1893	2019	4.435917	GGCGTGCATTGGAAATTTTGAATC	60.436	41.667	0.00	0.00	0.00	2.52
1944	2070	2.106566	TGTTTTTGTGGGCACATGTCT	58.893	42.857	0.00	0.00	41.52	3.41
1981	2107	3.738791	GTCCCTTGGTTACAAAAATTGCG	59.261	43.478	0.00	0.00	35.89	4.85
2073	2199	3.071874	TCGATTGATGGAGCCTTGTTT	57.928	42.857	0.00	0.00	0.00	2.83
2074	2200	2.749076	TCGATTGATGGAGCCTTGTTTG	59.251	45.455	0.00	0.00	0.00	2.93
2077	2203	1.909700	TGATGGAGCCTTGTTTGGAC	58.090	50.000	0.00	0.00	0.00	4.02
2120	2246	6.837471	ACTGCTTTAGTGTAGCTAGTTACT	57.163	37.500	16.50	2.04	38.49	2.24
2276	2402	3.303135	AGGCAGTGACGAAGGCGA	61.303	61.111	0.00	0.00	41.64	5.54
2293	2419	1.872237	GCGAGTACAACAAGACCAGCA	60.872	52.381	0.00	0.00	0.00	4.41
2392	2518	2.922779	GGTGGGTACAAGAACACCG	58.077	57.895	0.00	0.00	43.28	4.94
2528	2654	1.443872	CTGGTGCCGACGACTACAC	60.444	63.158	0.00	0.00	0.00	2.90
2547	2673	2.813908	GCCGGTGGCGACTACAAG	60.814	66.667	1.90	0.00	39.62	3.16
2552	2678	1.200716	CGGTGGCGACTACAAGAAGTA	59.799	52.381	0.00	0.00	0.00	2.24
2562	2688	2.902705	ACAAGAAGTACAGCACCGAA	57.097	45.000	0.00	0.00	0.00	4.30
2568	2694	4.642429	AGAAGTACAGCACCGAAGATTTT	58.358	39.130	0.00	0.00	0.00	1.82
2595	2721	1.593196	GCCACAACAAGTCTAGCACA	58.407	50.000	0.00	0.00	0.00	4.57
2628	2754	1.348036	GGTGGCTACAAGAACTCCAGT	59.652	52.381	1.52	0.00	0.00	4.00
2631	2757	1.002544	GGCTACAAGAACTCCAGTGCT	59.997	52.381	0.00	0.00	34.75	4.40
2639	2765	2.116983	AACTCCAGTGCTGATGCCGT	62.117	55.000	0.02	0.00	38.71	5.68
2796	2922	1.472878	TCCAGCACTGATGACGACTAC	59.527	52.381	0.00	0.00	0.00	2.73
2812	2938	3.707793	GACTACGATGGCTACAAGAAGG	58.292	50.000	0.00	0.00	0.00	3.46
2872	2998	1.598130	GCCGATGGGTATGCCACTC	60.598	63.158	1.04	0.00	36.17	3.51
2874	3000	1.739667	CGATGGGTATGCCACTCGA	59.260	57.895	15.16	0.00	40.44	4.04
2912	3038	7.867909	CGGCTCTGATGATTACTAGACAAAATA	59.132	37.037	0.00	0.00	0.00	1.40
2953	3162	4.383774	TTGCGATGCTAAATACGTATGC	57.616	40.909	9.24	9.05	0.00	3.14
3603	3948	2.921121	CGTTAGCGAACAGATAAGCACA	59.079	45.455	10.41	0.00	41.33	4.57
3637	4008	3.075998	CGATGTCGAGCACACAGC	58.924	61.111	0.00	0.00	43.02	4.40
3870	4241	5.934043	GGTGGGGTTCGTTTATATGTATACC	59.066	44.000	0.00	0.00	0.00	2.73
3871	4242	5.634859	GTGGGGTTCGTTTATATGTATACCG	59.365	44.000	0.00	0.00	0.00	4.02
3882	4253	9.856488	GTTTATATGTATACCGTGATGTGATCT	57.144	33.333	0.00	0.00	0.00	2.75

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
16	17	8.465201	AGAGACTTTTCCAATAAATCTCATTGC	58.535	33.333	0.00	0.00	34.79	3.56
53	54	1.975660	TAAGTGAAACCACTGCCACC	58.024	50.000	0.00	0.00	43.60	4.61
103	104	3.971150	AGAACAGACTTCGAGACAACAG	58.029	45.455	0.00	0.00	0.00	3.16
260	263	0.971959	TCATGGCCCAGTTTGATGGC	60.972	55.000	0.00	0.00	44.59	4.40
261	264	1.479323	CTTCATGGCCCAGTTTGATGG	59.521	52.381	0.00	0.00	40.29	3.51
539	542	3.214328	AGAGGCAAACATGTCGTTTTCT	58.786	40.909	0.00	0.00	45.79	2.52
673	676	5.125417	ACATACCAATAAACTGTCACCATGC	59.875	40.000	0.00	0.00	0.00	4.06
692	695	8.511321	TCATCCAATTGTGTAGTTCAAACATAC	58.489	33.333	4.43	0.00	0.00	2.39
855	875	7.786046	TCAACTAACAATACAGAAGTAGGGA	57.214	36.000	0.00	0.00	32.86	4.20
918	946	1.903183	AGTGTGCTTAGGAGAAGGGAC	59.097	52.381	0.00	0.00	0.00	4.46
919	947	1.902508	CAGTGTGCTTAGGAGAAGGGA	59.097	52.381	0.00	0.00	0.00	4.20
920	948	1.625818	ACAGTGTGCTTAGGAGAAGGG	59.374	52.381	0.00	0.00	0.00	3.95
921	949	3.764434	TCTACAGTGTGCTTAGGAGAAGG	59.236	47.826	5.88	0.00	0.00	3.46
922	950	5.392767	TTCTACAGTGTGCTTAGGAGAAG	57.607	43.478	5.88	0.00	0.00	2.85
923	951	5.801531	TTTCTACAGTGTGCTTAGGAGAA	57.198	39.130	5.88	2.06	0.00	2.87
924	952	5.246203	ACATTTCTACAGTGTGCTTAGGAGA	59.754	40.000	5.88	0.00	0.00	3.71
925	953	5.349817	CACATTTCTACAGTGTGCTTAGGAG	59.650	44.000	5.88	0.00	37.09	3.69
1017	1086	2.987149	CAAGTTACTGTCACCTGCTACG	59.013	50.000	0.00	0.00	0.00	3.51
1091	1161	7.404671	AACCTGTTACTTGAAACAATGAAGT	57.595	32.000	0.00	0.00	38.81	3.01
1159	1229	7.364144	GCTGGGGTTGAATCTAAATTTCTGATT	60.364	37.037	15.05	15.05	33.69	2.57
1184	1254	5.989551	ATCAATTTTTCTGTGTTTGTGGC	57.010	34.783	0.00	0.00	0.00	5.01
1201	1271	4.102838	AGCAGAGCCATCTCAGTAATCAAT	59.897	41.667	0.00	0.00	41.81	2.57
1224	1300	0.682852	AAACCTGCTACCGTGCTACA	59.317	50.000	0.00	0.00	0.00	2.74
1225	1301	2.660189	TAAACCTGCTACCGTGCTAC	57.340	50.000	0.00	0.00	0.00	3.58
1226	1302	3.527533	CATTAAACCTGCTACCGTGCTA	58.472	45.455	0.00	0.00	0.00	3.49
1227	1303	2.356135	CATTAAACCTGCTACCGTGCT	58.644	47.619	0.00	0.00	0.00	4.40
1228	1304	1.400494	CCATTAAACCTGCTACCGTGC	59.600	52.381	0.00	0.00	0.00	5.34
1229	1305	2.980568	TCCATTAAACCTGCTACCGTG	58.019	47.619	0.00	0.00	0.00	4.94
1230	1306	3.541632	CATCCATTAAACCTGCTACCGT	58.458	45.455	0.00	0.00	0.00	4.83
1231	1307	2.290641	GCATCCATTAAACCTGCTACCG	59.709	50.000	0.00	0.00	0.00	4.02
1232	1308	2.623416	GGCATCCATTAAACCTGCTACC	59.377	50.000	0.00	0.00	33.43	3.18
1489	1570	7.063426	CGTCAATACCATGCGATACAGAATATT	59.937	37.037	0.00	0.00	0.00	1.28
1512	1593	0.933047	TATACACGCAGCGCATCGTC	60.933	55.000	21.08	0.00	36.73	4.20
1519	1600	2.857748	TGAATTCAGTATACACGCAGCG	59.142	45.455	14.82	14.82	0.00	5.18
1553	1634	4.260948	GCTCAGCATCAAATAAGTGCCTAC	60.261	45.833	0.00	0.00	39.62	3.18
1554	1635	3.879295	GCTCAGCATCAAATAAGTGCCTA	59.121	43.478	0.00	0.00	39.62	3.93
1605	1694	9.069082	AGCACTACATCTATAGAAAACTCGTAT	57.931	33.333	6.52	0.00	0.00	3.06
1606	1695	8.343366	CAGCACTACATCTATAGAAAACTCGTA	58.657	37.037	6.52	1.87	0.00	3.43
1607	1696	7.067129	TCAGCACTACATCTATAGAAAACTCGT	59.933	37.037	6.52	0.81	0.00	4.18
1608	1697	7.418408	TCAGCACTACATCTATAGAAAACTCG	58.582	38.462	6.52	0.00	0.00	4.18
1609	1698	9.190858	CATCAGCACTACATCTATAGAAAACTC	57.809	37.037	6.52	0.00	0.00	3.01
1610	1699	7.655328	GCATCAGCACTACATCTATAGAAAACT	59.345	37.037	6.52	0.00	41.58	2.66
1672	1761	1.865865	TTGTGAGAAGAGAACACCGC	58.134	50.000	0.00	0.00	34.18	5.68
1712	1801	6.465439	AACTGTTCTAAAGGGGAAAACAAG	57.535	37.500	0.00	0.00	30.16	3.16
1750	1839	4.177026	CAGGTCTATGCACTACAACTGTC	58.823	47.826	0.00	0.00	0.00	3.51
1767	1856	6.985188	TCATATACAAAACTGAAGCAGGTC	57.015	37.500	0.00	0.00	35.51	3.85
1789	1905	5.359194	TGGGTCCTAGATCAAGTTCATTC	57.641	43.478	0.00	0.00	0.00	2.67
1872	1998	5.842619	TGATTCAAAATTTCCAATGCACG	57.157	34.783	0.00	0.00	0.00	5.34
1910	2036	7.415653	GCCCACAAAAACAAAAATTAATCCACA	60.416	33.333	0.00	0.00	0.00	4.17
1944	2070	1.070786	GGACAAGTGGAACCGCAGA	59.929	57.895	7.16	0.00	37.80	4.26
2073	2199	8.091449	AGTTGGAAAAATAAATTATTGCGTCCA	58.909	29.630	15.53	15.53	34.24	4.02
2074	2200	8.379902	CAGTTGGAAAAATAAATTATTGCGTCC	58.620	33.333	12.22	12.22	0.00	4.79
2077	2203	7.962917	AGCAGTTGGAAAAATAAATTATTGCG	58.037	30.769	0.00	0.00	0.00	4.85
2120	2246	7.578189	GCAATACGGTAGGAGGTATTTATAGCA	60.578	40.741	2.22	0.00	37.26	3.49
2276	2402	2.438021	TCCTTGCTGGTCTTGTTGTACT	59.562	45.455	0.00	0.00	37.07	2.73
2293	2419	0.179000	CTGCGGCCATAGTCTTCCTT	59.821	55.000	2.24	0.00	0.00	3.36
2378	2504	1.134226	CGTGTCGGTGTTCTTGTACC	58.866	55.000	0.00	0.00	0.00	3.34
2392	2518	1.202009	GCTACTGTAGTCGTCCGTGTC	60.202	57.143	15.71	0.00	0.00	3.67
2547	2673	5.638234	ACTAAAATCTTCGGTGCTGTACTTC	59.362	40.000	0.00	0.00	0.00	3.01
2552	2678	3.074412	CCACTAAAATCTTCGGTGCTGT	58.926	45.455	0.00	0.00	0.00	4.40
2595	2721	1.781786	AGCCACCATCATAGTCGTCT	58.218	50.000	0.00	0.00	0.00	4.18
2639	2765	0.103572	GTAACCGCCTTCGCCATAGA	59.896	55.000	0.00	0.00	0.00	1.98
2796	2922	2.695314	GGCCTTCTTGTAGCCATCG	58.305	57.895	0.00	0.00	46.34	3.84
2912	3038	2.961526	ACACACTCACTTTCACGACT	57.038	45.000	0.00	0.00	0.00	4.18
2953	3162	1.527034	AGCAGTAGCAACCACACATG	58.473	50.000	0.00	0.00	45.49	3.21
3603	3948	1.717032	TCGCTAGGCATTGGGATAGT	58.283	50.000	0.00	0.00	0.00	2.12
3637	4008	0.533755	CAGCTAGCCCAATTCGGAGG	60.534	60.000	12.13	0.00	36.56	4.30
3736	4107	1.550976	GTCTGGGCCTAATATCCCGAG	59.449	57.143	4.53	0.00	45.60	4.63
3835	4206	4.412843	ACGAACCCCACCATAAAGAAAAT	58.587	39.130	0.00	0.00	0.00	1.82
3849	4220	5.634859	CACGGTATACATATAAACGAACCCC	59.365	44.000	5.01	0.00	0.00	4.95
3882	4253	2.340078	GCCGCGGCTCTATGATGA	59.660	61.111	41.71	0.00	38.26	2.92

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.