Multiple sequence alignment - TraesCS2B01G317400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G317400 chr2B 100.000 4552 0 0 1 4552 453020858 453025409 0.000000e+00 8407.0
1 TraesCS2B01G317400 chr2B 100.000 3934 0 0 5061 8994 453025918 453029851 0.000000e+00 7265.0
2 TraesCS2B01G317400 chr2B 91.621 1635 123 9 2923 4552 403379592 403381217 0.000000e+00 2248.0
3 TraesCS2B01G317400 chr2B 92.831 809 32 11 5068 5853 490342210 490343015 0.000000e+00 1149.0
4 TraesCS2B01G317400 chr2B 91.677 817 29 16 5061 5853 490339051 490339852 0.000000e+00 1096.0
5 TraesCS2B01G317400 chr2B 96.703 91 3 0 2833 2923 660461561 660461471 1.560000e-32 152.0
6 TraesCS2B01G317400 chr2D 95.681 3172 90 15 5854 8994 382175244 382178399 0.000000e+00 5055.0
7 TraesCS2B01G317400 chr2D 94.294 2927 130 20 14 2923 382172343 382175249 0.000000e+00 4446.0
8 TraesCS2B01G317400 chr2D 96.703 91 3 0 2833 2923 491950143 491950053 1.560000e-32 152.0
9 TraesCS2B01G317400 chr2A 95.055 3175 115 10 5854 8994 516427152 516430318 0.000000e+00 4955.0
10 TraesCS2B01G317400 chr2A 95.383 1906 74 7 262 2160 516424195 516426093 0.000000e+00 3020.0
11 TraesCS2B01G317400 chr2A 93.928 774 31 10 2157 2923 516426393 516427157 0.000000e+00 1155.0
12 TraesCS2B01G317400 chr2A 89.017 173 13 4 73 241 516421944 516422114 9.150000e-50 209.0
13 TraesCS2B01G317400 chr2A 96.703 91 3 0 2833 2923 642914035 642913945 1.560000e-32 152.0
14 TraesCS2B01G317400 chr2A 88.312 77 6 2 19 92 516417043 516417119 1.240000e-13 89.8
15 TraesCS2B01G317400 chr6B 94.740 1635 80 2 2923 4552 339365839 339367472 0.000000e+00 2538.0
16 TraesCS2B01G317400 chr6B 91.688 794 42 11 5096 5867 339367863 339368654 0.000000e+00 1079.0
17 TraesCS2B01G317400 chr6B 88.600 807 44 11 5069 5853 114017460 114018240 0.000000e+00 937.0
18 TraesCS2B01G317400 chr6B 87.268 809 55 18 5061 5853 548818153 548818929 0.000000e+00 880.0
19 TraesCS2B01G317400 chr6B 96.667 60 2 0 5854 5913 720714506 720714447 5.750000e-17 100.0
20 TraesCS2B01G317400 chr6B 96.429 56 2 0 5854 5909 225525495 225525550 9.620000e-15 93.5
21 TraesCS2B01G317400 chr1B 93.662 1641 93 4 2923 4552 15154191 15152551 0.000000e+00 2444.0
22 TraesCS2B01G317400 chr1B 93.517 1635 95 3 2923 4552 47618464 47620092 0.000000e+00 2422.0
23 TraesCS2B01G317400 chr1B 93.337 1636 102 5 2922 4552 41847363 41845730 0.000000e+00 2410.0
24 TraesCS2B01G317400 chr1B 90.932 805 42 16 5064 5853 15152497 15151709 0.000000e+00 1053.0
25 TraesCS2B01G317400 chr1B 89.855 759 52 12 5119 5854 41845323 41844567 0.000000e+00 952.0
26 TraesCS2B01G317400 chr1B 88.657 670 48 18 5104 5749 331134041 331134706 0.000000e+00 791.0
27 TraesCS2B01G317400 chr7B 93.582 1636 88 6 2922 4552 527624826 527623203 0.000000e+00 2423.0
28 TraesCS2B01G317400 chr7B 93.032 1636 105 4 2925 4552 694750739 694752373 0.000000e+00 2381.0
29 TraesCS2B01G317400 chr7B 86.781 817 81 21 5061 5854 368212403 368213215 0.000000e+00 885.0
30 TraesCS2B01G317400 chr7B 96.703 91 3 0 2833 2923 639088027 639087937 1.560000e-32 152.0
31 TraesCS2B01G317400 chrUn 93.207 1634 102 5 2922 4550 78996318 78994689 0.000000e+00 2394.0
32 TraesCS2B01G317400 chrUn 88.221 815 66 13 5064 5853 155965092 155964283 0.000000e+00 946.0
33 TraesCS2B01G317400 chr3B 93.154 1636 101 5 2923 4552 762945850 762947480 0.000000e+00 2390.0
34 TraesCS2B01G317400 chr3B 91.702 1639 121 10 2923 4552 41975280 41973648 0.000000e+00 2259.0
35 TraesCS2B01G317400 chr3B 91.299 816 47 9 5061 5853 762947531 762948345 0.000000e+00 1092.0
36 TraesCS2B01G317400 chr3B 96.703 91 3 0 2833 2923 550641416 550641506 1.560000e-32 152.0
37 TraesCS2B01G317400 chr5B 87.308 780 69 20 5099 5853 133601821 133601047 0.000000e+00 865.0
38 TraesCS2B01G317400 chr5B 93.846 65 3 1 5854 5918 12855339 12855402 7.430000e-16 97.1
39 TraesCS2B01G317400 chr7A 96.703 91 3 0 2833 2923 83784973 83784883 1.560000e-32 152.0
40 TraesCS2B01G317400 chr4A 95.652 92 4 0 2833 2924 83357367 83357458 2.020000e-31 148.0
41 TraesCS2B01G317400 chr5D 93.846 65 3 1 5854 5918 12987854 12987917 7.430000e-16 97.1
42 TraesCS2B01G317400 chr4D 95.161 62 2 1 5854 5914 54796004 54795943 7.430000e-16 97.1
43 TraesCS2B01G317400 chr4B 96.552 58 2 0 5854 5911 143309735 143309792 7.430000e-16 97.1
44 TraesCS2B01G317400 chr7D 96.491 57 2 0 5854 5910 120323580 120323636 2.670000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G317400 chr2B 453020858 453029851 8993 False 7836.00 8407 100.00000 1 8994 2 chr2B.!!$F2 8993
1 TraesCS2B01G317400 chr2B 403379592 403381217 1625 False 2248.00 2248 91.62100 2923 4552 1 chr2B.!!$F1 1629
2 TraesCS2B01G317400 chr2B 490339051 490343015 3964 False 1122.50 1149 92.25400 5061 5853 2 chr2B.!!$F3 792
3 TraesCS2B01G317400 chr2D 382172343 382178399 6056 False 4750.50 5055 94.98750 14 8994 2 chr2D.!!$F1 8980
4 TraesCS2B01G317400 chr2A 516421944 516430318 8374 False 2334.75 4955 93.34575 73 8994 4 chr2A.!!$F2 8921
5 TraesCS2B01G317400 chr6B 339365839 339368654 2815 False 1808.50 2538 93.21400 2923 5867 2 chr6B.!!$F4 2944
6 TraesCS2B01G317400 chr6B 114017460 114018240 780 False 937.00 937 88.60000 5069 5853 1 chr6B.!!$F1 784
7 TraesCS2B01G317400 chr6B 548818153 548818929 776 False 880.00 880 87.26800 5061 5853 1 chr6B.!!$F3 792
8 TraesCS2B01G317400 chr1B 47618464 47620092 1628 False 2422.00 2422 93.51700 2923 4552 1 chr1B.!!$F1 1629
9 TraesCS2B01G317400 chr1B 15151709 15154191 2482 True 1748.50 2444 92.29700 2923 5853 2 chr1B.!!$R1 2930
10 TraesCS2B01G317400 chr1B 41844567 41847363 2796 True 1681.00 2410 91.59600 2922 5854 2 chr1B.!!$R2 2932
11 TraesCS2B01G317400 chr1B 331134041 331134706 665 False 791.00 791 88.65700 5104 5749 1 chr1B.!!$F2 645
12 TraesCS2B01G317400 chr7B 527623203 527624826 1623 True 2423.00 2423 93.58200 2922 4552 1 chr7B.!!$R1 1630
13 TraesCS2B01G317400 chr7B 694750739 694752373 1634 False 2381.00 2381 93.03200 2925 4552 1 chr7B.!!$F2 1627
14 TraesCS2B01G317400 chr7B 368212403 368213215 812 False 885.00 885 86.78100 5061 5854 1 chr7B.!!$F1 793
15 TraesCS2B01G317400 chrUn 78994689 78996318 1629 True 2394.00 2394 93.20700 2922 4550 1 chrUn.!!$R1 1628
16 TraesCS2B01G317400 chrUn 155964283 155965092 809 True 946.00 946 88.22100 5064 5853 1 chrUn.!!$R2 789
17 TraesCS2B01G317400 chr3B 41973648 41975280 1632 True 2259.00 2259 91.70200 2923 4552 1 chr3B.!!$R1 1629
18 TraesCS2B01G317400 chr3B 762945850 762948345 2495 False 1741.00 2390 92.22650 2923 5853 2 chr3B.!!$F2 2930
19 TraesCS2B01G317400 chr5B 133601047 133601821 774 True 865.00 865 87.30800 5099 5853 1 chr5B.!!$R1 754

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
233 239 0.107214 ACAATCACCATAGTGGGGCG 60.107 55.000 0.52 0.00 41.90 6.13 F
234 240 0.107214 CAATCACCATAGTGGGGCGT 60.107 55.000 0.52 0.00 41.90 5.68 F
285 2359 0.109153 TGAGAGAGGCAAGCAAGCAA 59.891 50.000 2.78 0.00 35.83 3.91 F
294 2368 0.378257 CAAGCAAGCAACGACACACT 59.622 50.000 0.00 0.00 0.00 3.55 F
439 2513 0.537371 AGCCCAACAACAGCACCTAC 60.537 55.000 0.00 0.00 0.00 3.18 F
1030 3115 1.148027 AGATGAGAGCCCGGGAATCTA 59.852 52.381 29.31 14.75 0.00 1.98 F
2464 4853 1.134965 GCTGCTGTCGGTAGATGTTCT 60.135 52.381 0.20 0.00 0.00 3.01 F
2920 5316 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46 F
3718 6116 0.179119 GAGCGTAGTACATGGCCGTT 60.179 55.000 0.00 0.00 0.00 4.44 F
4009 6407 1.174783 CGTAGTACCAGGTCTGTGCT 58.825 55.000 0.00 0.00 0.00 4.40 F
4244 6642 2.202919 CAGCATGACCGCGATCCA 60.203 61.111 8.23 1.99 39.69 3.41 F
5373 11058 3.564027 GATCGGCGCGGTGGAAAG 61.564 66.667 15.06 0.00 0.00 2.62 F
5969 11685 2.463589 TACAAGCCTTGGGAGCACCG 62.464 60.000 9.64 0.00 44.64 4.94 F
6356 12075 0.033109 AAGGGAAGGGTATGCAAGGC 60.033 55.000 0.00 0.00 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1091 3176 0.038166 GCAATGGGAGTGGAGGAACA 59.962 55.000 0.00 0.00 0.00 3.18 R
1416 3501 0.321671 CGCCTTCCTCCAGAACTTCA 59.678 55.000 0.00 0.00 0.00 3.02 R
1679 3764 0.482446 TTCATTGGGTGGAGCCAACT 59.518 50.000 12.38 0.45 39.65 3.16 R
1908 3993 4.651045 AGAACCCTCTTCAAATTGCAAAGT 59.349 37.500 1.71 0.00 0.00 2.66 R
2343 4732 2.049435 GGGTGGCCCTGTTTTTCAG 58.951 57.895 0.00 0.00 41.34 3.02 R
2849 5245 0.687354 GAGGCTGTTTCCAGGACTCA 59.313 55.000 0.00 0.00 39.22 3.41 R
3700 6098 0.248289 AAACGGCCATGTACTACGCT 59.752 50.000 2.24 0.00 0.00 5.07 R
3767 6165 0.882474 CTCTTCGTCGGTGGACTTCT 59.118 55.000 0.00 0.00 41.16 2.85 R
5444 11155 0.837691 TCATGTCTGCTCCACCACCT 60.838 55.000 0.00 0.00 0.00 4.00 R
5629 11340 3.629220 GGAGACCTAACCCTAGCCA 57.371 57.895 0.00 0.00 0.00 4.75 R
5969 11685 6.261603 TGTGCATTCAGATGAAAGACATATCC 59.738 38.462 0.00 0.00 39.56 2.59 R
6253 11972 0.400594 CCGGCCTAATAAAGAGGGGG 59.599 60.000 0.00 0.00 34.35 5.40 R
7846 13580 1.072965 CACCCCTTCTGCTCTTCAGTT 59.927 52.381 0.00 0.00 43.32 3.16 R
8172 13906 1.975660 TAAGTGAAACCACTGCCACC 58.024 50.000 0.00 0.00 43.60 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 38 2.094545 GGTCTTCATTTGGCATTTCGCT 60.095 45.455 0.00 0.00 41.91 4.93
42 44 2.087501 TTTGGCATTTCGCTCTCGTA 57.912 45.000 0.00 0.00 41.91 3.43
48 50 2.728922 CATTTCGCTCTCGTACCCTAC 58.271 52.381 0.00 0.00 36.96 3.18
51 53 1.306148 TCGCTCTCGTACCCTACATG 58.694 55.000 0.00 0.00 36.96 3.21
176 182 8.560355 TTCAAAATCGAGTGAAATGAATCCTA 57.440 30.769 6.52 0.00 30.93 2.94
177 183 8.737168 TCAAAATCGAGTGAAATGAATCCTAT 57.263 30.769 0.00 0.00 0.00 2.57
178 184 8.615211 TCAAAATCGAGTGAAATGAATCCTATG 58.385 33.333 0.00 0.00 0.00 2.23
184 190 8.668353 TCGAGTGAAATGAATCCTATGAAAAAG 58.332 33.333 0.00 0.00 0.00 2.27
227 233 4.699735 TGCGAATCAAACAATCACCATAGT 59.300 37.500 0.00 0.00 0.00 2.12
231 237 3.696045 TCAAACAATCACCATAGTGGGG 58.304 45.455 0.52 0.00 44.11 4.96
232 238 2.143876 AACAATCACCATAGTGGGGC 57.856 50.000 0.52 0.00 41.90 5.80
233 239 0.107214 ACAATCACCATAGTGGGGCG 60.107 55.000 0.52 0.00 41.90 6.13
234 240 0.107214 CAATCACCATAGTGGGGCGT 60.107 55.000 0.52 0.00 41.90 5.68
235 241 1.140052 CAATCACCATAGTGGGGCGTA 59.860 52.381 0.52 0.00 41.90 4.42
236 242 0.756903 ATCACCATAGTGGGGCGTAC 59.243 55.000 0.52 0.00 41.90 3.67
237 243 0.324923 TCACCATAGTGGGGCGTACT 60.325 55.000 0.52 0.00 41.90 2.73
238 244 1.063792 TCACCATAGTGGGGCGTACTA 60.064 52.381 0.52 2.58 41.90 1.82
239 245 1.758280 CACCATAGTGGGGCGTACTAA 59.242 52.381 0.52 0.00 43.37 2.24
240 246 2.168936 CACCATAGTGGGGCGTACTAAA 59.831 50.000 0.52 0.00 43.37 1.85
241 247 2.169144 ACCATAGTGGGGCGTACTAAAC 59.831 50.000 0.52 0.00 43.37 2.01
242 248 2.800629 CCATAGTGGGGCGTACTAAACG 60.801 54.545 4.01 0.00 43.72 3.60
243 249 5.295897 CCATAGTGGGGCGTACTAAACGT 62.296 52.174 4.01 0.00 43.19 3.99
285 2359 0.109153 TGAGAGAGGCAAGCAAGCAA 59.891 50.000 2.78 0.00 35.83 3.91
292 2366 1.063972 GCAAGCAAGCAACGACACA 59.936 52.632 0.00 0.00 0.00 3.72
293 2367 1.202348 GCAAGCAAGCAACGACACAC 61.202 55.000 0.00 0.00 0.00 3.82
294 2368 0.378257 CAAGCAAGCAACGACACACT 59.622 50.000 0.00 0.00 0.00 3.55
369 2443 5.529060 CAGTTTAGAAGGGCTCAATACATCC 59.471 44.000 0.00 0.00 0.00 3.51
437 2511 1.829533 CAGCCCAACAACAGCACCT 60.830 57.895 0.00 0.00 0.00 4.00
439 2513 0.537371 AGCCCAACAACAGCACCTAC 60.537 55.000 0.00 0.00 0.00 3.18
567 2641 2.591311 GCGACTTCGTTGTTCGGCA 61.591 57.895 0.00 0.00 42.22 5.69
578 2652 1.951631 GTTCGGCAGCTATCTCGGC 60.952 63.158 0.00 0.00 0.00 5.54
604 2678 3.870633 ACTAAGTAAGCCTCACCTTCG 57.129 47.619 0.00 0.00 0.00 3.79
618 2692 1.604278 ACCTTCGCAGCTGTCTTTTTC 59.396 47.619 16.64 0.00 0.00 2.29
679 2754 2.359900 CAGCCGCTAGATTTTTCAGGT 58.640 47.619 0.00 0.00 0.00 4.00
704 2779 5.528690 CCTGATTTCAGTTGTCTTGAGAACA 59.471 40.000 12.12 0.00 42.27 3.18
887 2972 6.686484 TCATAAAGGGAGCATAGCTGATAA 57.314 37.500 0.00 0.00 39.88 1.75
894 2979 4.639310 GGGAGCATAGCTGATAAATCATGG 59.361 45.833 0.00 0.00 39.88 3.66
958 3043 9.751542 ATAATCTAGTCTAACTCATGTTTTCCG 57.248 33.333 0.00 0.00 37.59 4.30
964 3049 6.317893 AGTCTAACTCATGTTTTCCGTTTTGT 59.682 34.615 0.00 0.00 37.59 2.83
979 3064 3.105937 GTTTTGTGCGAAACTGAACCTC 58.894 45.455 7.57 0.00 36.75 3.85
1030 3115 1.148027 AGATGAGAGCCCGGGAATCTA 59.852 52.381 29.31 14.75 0.00 1.98
1035 3120 1.433592 AGAGCCCGGGAATCTATAGGT 59.566 52.381 29.31 0.00 0.00 3.08
1090 3175 4.720902 CCACCGCCCTGCATGACA 62.721 66.667 0.00 0.00 0.00 3.58
1091 3176 2.438975 CACCGCCCTGCATGACAT 60.439 61.111 0.00 0.00 0.00 3.06
1136 3221 2.034558 CGTGTTTCAGGAAGTTGCCATT 59.965 45.455 0.00 0.00 0.00 3.16
1164 3249 3.544684 TCCATGTGCCATGTCTTGTATC 58.455 45.455 12.36 0.00 0.00 2.24
1214 3299 2.103373 AGACTGCTTAAGCTCGGATCA 58.897 47.619 26.90 5.17 42.66 2.92
1353 3438 2.591571 TTCTCGAGATGCATGGTCTG 57.408 50.000 17.44 0.00 0.00 3.51
1359 3444 1.483827 GAGATGCATGGTCTGGTCTCA 59.516 52.381 2.46 0.00 33.93 3.27
1415 3500 4.590647 TGGGCTTTCAACAATTGGTATTCA 59.409 37.500 10.83 0.00 0.00 2.57
1416 3501 5.248020 TGGGCTTTCAACAATTGGTATTCAT 59.752 36.000 10.83 0.00 0.00 2.57
1434 3519 2.026822 TCATGAAGTTCTGGAGGAAGGC 60.027 50.000 4.17 0.00 34.23 4.35
1499 3584 2.813754 CGTCTGCCAGAAAAATGAGGAA 59.186 45.455 0.00 0.00 0.00 3.36
1532 3617 3.173953 TGTTTTCTCCAATGGCCTGAT 57.826 42.857 3.32 0.00 0.00 2.90
1543 3628 6.322931 TCCAATGGCCTGATAGTAGAGATAA 58.677 40.000 3.32 0.00 0.00 1.75
1589 3674 1.394917 CAGCGTTGAGGTGCAGATTAC 59.605 52.381 0.00 0.00 41.78 1.89
1593 3678 3.325870 CGTTGAGGTGCAGATTACTGAA 58.674 45.455 0.00 0.00 46.03 3.02
1779 3864 4.339247 CCAGATGCGGTAAAGGAAATCAAT 59.661 41.667 0.00 0.00 0.00 2.57
2260 4649 7.402361 GGGCTATAGTGGTTCCCTTAGTATTAT 59.598 40.741 0.84 0.00 34.19 1.28
2343 4732 1.333619 TGGCGAAACTCTGTTTCTTGC 59.666 47.619 17.42 14.41 0.00 4.01
2344 4733 1.604278 GGCGAAACTCTGTTTCTTGCT 59.396 47.619 17.42 0.00 0.00 3.91
2464 4853 1.134965 GCTGCTGTCGGTAGATGTTCT 60.135 52.381 0.20 0.00 0.00 3.01
2496 4885 7.823745 ATTTAGTCCTACCATATGCAAAAGG 57.176 36.000 0.00 0.00 0.00 3.11
2499 4888 6.321821 AGTCCTACCATATGCAAAAGGTAA 57.678 37.500 13.40 0.82 36.28 2.85
2641 5031 4.771577 TGCATGTTCAAACCCAATCTACAT 59.228 37.500 0.00 0.00 0.00 2.29
2642 5032 5.948758 TGCATGTTCAAACCCAATCTACATA 59.051 36.000 0.00 0.00 0.00 2.29
2643 5033 6.606796 TGCATGTTCAAACCCAATCTACATAT 59.393 34.615 0.00 0.00 0.00 1.78
2644 5034 7.141363 GCATGTTCAAACCCAATCTACATATC 58.859 38.462 0.00 0.00 0.00 1.63
2645 5035 7.201812 GCATGTTCAAACCCAATCTACATATCA 60.202 37.037 0.00 0.00 0.00 2.15
2646 5036 8.685427 CATGTTCAAACCCAATCTACATATCAA 58.315 33.333 0.00 0.00 0.00 2.57
2647 5037 8.050778 TGTTCAAACCCAATCTACATATCAAC 57.949 34.615 0.00 0.00 0.00 3.18
2648 5038 7.888021 TGTTCAAACCCAATCTACATATCAACT 59.112 33.333 0.00 0.00 0.00 3.16
2649 5039 8.739972 GTTCAAACCCAATCTACATATCAACTT 58.260 33.333 0.00 0.00 0.00 2.66
2735 5125 5.808366 TCTCTTCTGCTTTTCTTAGTGGA 57.192 39.130 0.00 0.00 0.00 4.02
2766 5156 8.082852 TGGAATTTGCATTTTGAAATTTCATGG 58.917 29.630 21.10 11.85 33.82 3.66
2806 5198 3.652057 ATCAATCCACCCGATGTTTCT 57.348 42.857 0.00 0.00 0.00 2.52
2849 5245 1.378762 CCCATGAGGTCACGGGTTT 59.621 57.895 2.76 0.00 43.99 3.27
2894 5290 2.310052 AGAAATGTAGGGAAAGGCTGCT 59.690 45.455 0.00 0.00 0.00 4.24
2919 5315 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
2920 5316 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
3366 5764 2.223803 ACTCCTCGAGGTGATCAACT 57.776 50.000 34.06 14.62 33.35 3.16
3437 5835 2.569059 CGTCCTCCGGAATGTAGTCTA 58.431 52.381 5.23 0.00 31.38 2.59
3518 5916 3.731766 AAGCACAACCCTTGGCGGT 62.732 57.895 0.00 0.00 37.93 5.68
3679 6077 4.746309 GCCTGCTGGATGGCCACA 62.746 66.667 8.16 0.36 43.11 4.17
3718 6116 0.179119 GAGCGTAGTACATGGCCGTT 60.179 55.000 0.00 0.00 0.00 4.44
3754 6152 2.338620 CGAAGCTCCACGTCCACA 59.661 61.111 0.00 0.00 0.00 4.17
3940 6338 1.543429 CCAAAACGAAGGAGGCAGAGT 60.543 52.381 0.00 0.00 0.00 3.24
4009 6407 1.174783 CGTAGTACCAGGTCTGTGCT 58.825 55.000 0.00 0.00 0.00 4.40
4015 6413 4.694233 CAGGTCTGTGCTGCGCCT 62.694 66.667 11.12 2.45 0.00 5.52
4244 6642 2.202919 CAGCATGACCGCGATCCA 60.203 61.111 8.23 1.99 39.69 3.41
5363 11048 4.907034 CGGTGGAGTCGATCGGCG 62.907 72.222 14.98 0.00 42.69 6.46
5373 11058 3.564027 GATCGGCGCGGTGGAAAG 61.564 66.667 15.06 0.00 0.00 2.62
5570 11281 4.717629 CGTGGTGAAGCTCGCGGA 62.718 66.667 6.13 0.00 33.83 5.54
5701 11414 6.849502 TGATTGCTTCTTTGCTTCATTAGAG 58.150 36.000 0.00 0.00 0.00 2.43
5762 11478 7.736893 ACTCCTAAGCAAACGATCCTAATAAT 58.263 34.615 0.00 0.00 0.00 1.28
5969 11685 2.463589 TACAAGCCTTGGGAGCACCG 62.464 60.000 9.64 0.00 44.64 4.94
5996 11712 4.392047 TGTCTTTCATCTGAATGCACACT 58.608 39.130 0.00 0.00 33.54 3.55
6152 11869 8.267894 GTGCCATCCATATAGTAGGTCAATATT 58.732 37.037 0.00 0.00 0.00 1.28
6252 11971 5.429957 AAAAGAGTCAAAGACTGCATGAC 57.570 39.130 8.97 8.97 43.53 3.06
6253 11972 3.051081 AGAGTCAAAGACTGCATGACC 57.949 47.619 12.60 5.96 43.53 4.02
6311 12030 9.962783 GAAGTTGTCTGTTACTCTAGTCTAAAA 57.037 33.333 0.00 0.00 0.00 1.52
6356 12075 0.033109 AAGGGAAGGGTATGCAAGGC 60.033 55.000 0.00 0.00 0.00 4.35
6444 12163 8.033038 ACTAGAATAACATGCGTTCAAGAACTA 58.967 33.333 10.83 1.17 39.08 2.24
6448 12167 2.288579 ACATGCGTTCAAGAACTACGGA 60.289 45.455 10.83 0.88 39.81 4.69
6673 12393 8.836413 TGGATTTTATTCTAAATGTAAGAGCCG 58.164 33.333 0.00 0.00 0.00 5.52
6724 12444 6.825944 TGCTTGCAATTTACCATGTACTAA 57.174 33.333 0.00 0.00 0.00 2.24
6813 12547 4.775236 AGCCACTCATATTTTCAGACTCC 58.225 43.478 0.00 0.00 0.00 3.85
6845 12579 8.588290 TTCCTATGGCTTGTATGTTTGTAAAT 57.412 30.769 0.00 0.00 0.00 1.40
6872 12606 5.105351 TGGTGTGTTATCTCTATCAGTGTGG 60.105 44.000 0.00 0.00 0.00 4.17
6896 12630 5.564848 GCCCAACTTACATCTTTGAACTTCC 60.565 44.000 0.00 0.00 0.00 3.46
7041 12775 9.595823 TCCTGACAGTTTATGCTTAACTTATAC 57.404 33.333 0.93 0.00 33.73 1.47
7096 12830 4.511454 TGTGACTTCAGGAACTTGAATTCG 59.489 41.667 0.04 0.00 34.60 3.34
7124 12858 6.867816 AGAGAATGCTTTTATATCTCGAGCAG 59.132 38.462 7.81 0.00 45.37 4.24
7131 12865 4.855715 TTATATCTCGAGCAGTTGAGGG 57.144 45.455 7.81 0.00 35.12 4.30
7279 13013 7.596749 ACTTTCACGGAAAAGACATATACTG 57.403 36.000 15.95 0.00 38.30 2.74
7327 13061 1.983972 CTTATATGACGCTCGCCTCC 58.016 55.000 0.00 0.00 0.00 4.30
7353 13087 1.369625 CGCTTTCGTGCCCTAGAATT 58.630 50.000 0.00 0.00 0.00 2.17
7360 13094 4.067972 TCGTGCCCTAGAATTCAATACC 57.932 45.455 8.44 0.00 0.00 2.73
7372 13106 7.639113 AGAATTCAATACCGATGGCTTTAAA 57.361 32.000 8.44 0.00 0.00 1.52
7484 13218 4.884668 TCTGAACGTTCCTTTATGACCT 57.115 40.909 24.78 0.00 0.00 3.85
7556 13290 5.407407 TGAATGTGTAAAGGGAGAGAGAC 57.593 43.478 0.00 0.00 0.00 3.36
7875 13609 2.912956 AGCAGAAGGGGTGTATTCTCAA 59.087 45.455 0.00 0.00 33.51 3.02
8003 13737 5.112220 TCTTGCACAATGAAGTTGATGTC 57.888 39.130 0.00 0.00 40.37 3.06
8057 13791 4.762251 GTGGAGCTTACTTTCAAGATGGTT 59.238 41.667 0.00 0.00 0.00 3.67
8172 13906 3.124297 GGAAAAGTCTCTGACATGCTTCG 59.876 47.826 0.00 0.00 34.60 3.79
8222 13956 7.386025 TCATGCTTCTGTATAATCATGTAGCAC 59.614 37.037 0.00 0.00 38.72 4.40
8379 14115 4.576053 TGTTTATCAGCCATGGAAGAATCG 59.424 41.667 18.40 0.00 0.00 3.34
8380 14116 1.602311 ATCAGCCATGGAAGAATCGC 58.398 50.000 18.40 0.00 0.00 4.58
8658 14395 6.969366 CAAGTATGTCTTGGTTCAATGAACA 58.031 36.000 25.14 10.57 46.85 3.18
8688 14425 6.071952 ACGACATGTTTGCCTCTTTTATCAAT 60.072 34.615 0.00 0.00 0.00 2.57
8779 14516 9.702494 ATTCCTCAGATGAAAAGAAAATTGTTC 57.298 29.630 0.00 0.00 0.00 3.18
8792 14529 9.918630 AAAGAAAATTGTTCTAGACATGAATGG 57.081 29.630 0.00 0.00 38.26 3.16
8870 14622 4.324424 CAAAGTTGCCTTGTGCCG 57.676 55.556 0.00 0.00 40.16 5.69
8990 14744 7.607991 AGTGATTTTGTCCCTACTTCTGTATTG 59.392 37.037 0.00 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 6.701400 CCAAATGAAGACCGAATTTGAAAACT 59.299 34.615 8.52 0.00 41.64 2.66
4 5 5.465056 GCCAAATGAAGACCGAATTTGAAAA 59.535 36.000 8.52 0.00 41.64 2.29
5 6 4.987912 GCCAAATGAAGACCGAATTTGAAA 59.012 37.500 8.52 0.00 41.64 2.69
6 7 4.038522 TGCCAAATGAAGACCGAATTTGAA 59.961 37.500 8.52 0.00 41.64 2.69
7 8 3.571828 TGCCAAATGAAGACCGAATTTGA 59.428 39.130 8.52 0.00 41.64 2.69
8 9 3.911868 TGCCAAATGAAGACCGAATTTG 58.088 40.909 0.00 0.00 39.77 2.32
9 10 4.806640 ATGCCAAATGAAGACCGAATTT 57.193 36.364 0.00 0.00 0.00 1.82
10 11 4.806640 AATGCCAAATGAAGACCGAATT 57.193 36.364 0.00 0.00 0.00 2.17
11 12 4.675146 CGAAATGCCAAATGAAGACCGAAT 60.675 41.667 0.00 0.00 0.00 3.34
12 13 3.365868 CGAAATGCCAAATGAAGACCGAA 60.366 43.478 0.00 0.00 0.00 4.30
113 118 5.344128 CCGCTTGAACTTCTTGAATGAATTG 59.656 40.000 0.00 0.00 0.00 2.32
119 124 3.441572 CCATCCGCTTGAACTTCTTGAAT 59.558 43.478 0.00 0.00 0.00 2.57
121 126 2.038426 TCCATCCGCTTGAACTTCTTGA 59.962 45.455 0.00 0.00 0.00 3.02
177 183 9.910267 TGATCTGAATCATTAGGATCTTTTTCA 57.090 29.630 10.29 0.00 36.98 2.69
233 239 9.720667 AAAAGTAAACATTTGGACGTTTAGTAC 57.279 29.630 0.00 0.00 39.28 2.73
238 244 9.642327 ACTTTAAAAGTAAACATTTGGACGTTT 57.358 25.926 0.00 0.00 40.69 3.60
239 245 9.642327 AACTTTAAAAGTAAACATTTGGACGTT 57.358 25.926 0.00 0.00 41.91 3.99
240 246 9.642327 AAACTTTAAAAGTAAACATTTGGACGT 57.358 25.926 0.00 0.00 41.91 4.34
241 247 9.894439 CAAACTTTAAAAGTAAACATTTGGACG 57.106 29.630 0.00 0.00 41.91 4.79
260 266 2.936202 TGCTTGCCTCTCTCAAACTTT 58.064 42.857 0.00 0.00 0.00 2.66
285 2359 1.282248 CGCGATTCCAAGTGTGTCGT 61.282 55.000 0.00 0.00 34.97 4.34
292 2366 2.325082 GGTGCACGCGATTCCAAGT 61.325 57.895 15.93 0.00 0.00 3.16
293 2367 2.324330 TGGTGCACGCGATTCCAAG 61.324 57.895 15.93 0.00 0.00 3.61
294 2368 2.281139 TGGTGCACGCGATTCCAA 60.281 55.556 15.93 0.00 0.00 3.53
369 2443 4.637771 CCCTTCTAAACTGGGCCG 57.362 61.111 0.00 0.00 33.88 6.13
437 2511 2.212869 ACGAGAGTGCGTTGTTTGTA 57.787 45.000 0.00 0.00 46.97 2.41
567 2641 1.490574 AGTTTGGAGCCGAGATAGCT 58.509 50.000 0.00 0.00 45.23 3.32
578 2652 4.020128 AGGTGAGGCTTACTTAGTTTGGAG 60.020 45.833 9.44 0.00 0.00 3.86
618 2692 3.365265 GGCACCAAACCCTCGCTG 61.365 66.667 0.00 0.00 0.00 5.18
704 2779 9.809096 CACTGAAGATACATACTACAATTGAGT 57.191 33.333 13.59 13.17 0.00 3.41
875 2956 4.670992 CGCACCATGATTTATCAGCTATGC 60.671 45.833 0.00 5.19 40.64 3.14
876 2957 4.142752 CCGCACCATGATTTATCAGCTATG 60.143 45.833 0.00 0.00 40.64 2.23
887 2972 1.802636 CTTTCGCCGCACCATGATT 59.197 52.632 0.00 0.00 0.00 2.57
894 2979 0.179222 GAACTAAGCTTTCGCCGCAC 60.179 55.000 3.20 0.00 36.60 5.34
958 3043 3.105937 GAGGTTCAGTTTCGCACAAAAC 58.894 45.455 0.00 0.00 39.03 2.43
979 3064 1.374758 GTCCTGTCCTCCTGTTGCG 60.375 63.158 0.00 0.00 0.00 4.85
983 3068 0.911525 CATGGGTCCTGTCCTCCTGT 60.912 60.000 0.00 0.00 0.00 4.00
992 3077 2.203252 CCATCGCCATGGGTCCTG 60.203 66.667 15.13 4.09 45.63 3.86
1030 3115 2.445905 TCAGGTCCTCCGACATACCTAT 59.554 50.000 0.00 0.00 40.39 2.57
1035 3120 1.471119 GTGTCAGGTCCTCCGACATA 58.529 55.000 13.62 0.00 43.28 2.29
1090 3175 1.341383 GCAATGGGAGTGGAGGAACAT 60.341 52.381 0.00 0.00 0.00 2.71
1091 3176 0.038166 GCAATGGGAGTGGAGGAACA 59.962 55.000 0.00 0.00 0.00 3.18
1136 3221 2.519949 TGGCACATGGAGGTTGCA 59.480 55.556 7.45 0.00 0.00 4.08
1164 3249 1.447489 CTGAACGGAGCAGCAGAGG 60.447 63.158 0.00 0.00 0.00 3.69
1214 3299 4.012374 ACCAGAAGACGAATGCATTTCAT 58.988 39.130 14.33 0.60 36.87 2.57
1353 3438 4.272018 CGGTTGATTGAATCTGATGAGACC 59.728 45.833 6.73 3.11 0.00 3.85
1359 3444 3.054434 TGGACCGGTTGATTGAATCTGAT 60.054 43.478 9.42 0.00 0.00 2.90
1415 3500 1.065854 CGCCTTCCTCCAGAACTTCAT 60.066 52.381 0.00 0.00 0.00 2.57
1416 3501 0.321671 CGCCTTCCTCCAGAACTTCA 59.678 55.000 0.00 0.00 0.00 3.02
1434 3519 4.148825 CTCTCGGCAACCTCCCCG 62.149 72.222 0.00 0.00 45.64 5.73
1499 3584 4.462483 TGGAGAAAACAACAGAAGTTTGCT 59.538 37.500 0.00 0.00 45.29 3.91
1532 3617 6.443527 TGCCCATAATGCCATTATCTCTACTA 59.556 38.462 6.97 0.00 33.34 1.82
1543 3628 2.158430 TCATCACTGCCCATAATGCCAT 60.158 45.455 0.00 0.00 0.00 4.40
1589 3674 0.835941 CCCCAGATCCCACTCTTCAG 59.164 60.000 0.00 0.00 0.00 3.02
1593 3678 1.516110 CAATCCCCAGATCCCACTCT 58.484 55.000 0.00 0.00 0.00 3.24
1679 3764 0.482446 TTCATTGGGTGGAGCCAACT 59.518 50.000 12.38 0.45 39.65 3.16
1795 3880 6.435277 AGTGGATGCAAAAGTTCAGAATACAT 59.565 34.615 0.00 0.00 0.00 2.29
1873 3958 7.354257 CAACCAATGAAAAGCCAAATAACTTG 58.646 34.615 0.00 0.00 34.52 3.16
1908 3993 4.651045 AGAACCCTCTTCAAATTGCAAAGT 59.349 37.500 1.71 0.00 0.00 2.66
1912 3997 4.985538 AGTAGAACCCTCTTCAAATTGCA 58.014 39.130 0.00 0.00 32.70 4.08
2343 4732 2.049435 GGGTGGCCCTGTTTTTCAG 58.951 57.895 0.00 0.00 41.34 3.02
2344 4733 4.286447 GGGTGGCCCTGTTTTTCA 57.714 55.556 0.00 0.00 41.34 2.69
2464 4853 8.531982 GCATATGGTAGGACTAAATAGTGATCA 58.468 37.037 4.56 0.00 36.50 2.92
2496 4885 8.044060 TGGACATGTTCTTCATTCAGATTTAC 57.956 34.615 5.55 0.00 34.09 2.01
2499 4888 6.150641 CACTGGACATGTTCTTCATTCAGATT 59.849 38.462 5.55 0.00 34.09 2.40
2735 5125 4.686191 TCAAAATGCAAATTCCACACCT 57.314 36.364 0.00 0.00 0.00 4.00
2849 5245 0.687354 GAGGCTGTTTCCAGGACTCA 59.313 55.000 0.00 0.00 39.22 3.41
2869 5265 2.424956 GCCTTTCCCTACATTTCTGCAG 59.575 50.000 7.63 7.63 0.00 4.41
2917 5313 2.066999 CCCAGCTCCTACCAGGGTC 61.067 68.421 0.00 0.00 35.59 4.46
2918 5314 2.041265 CCCAGCTCCTACCAGGGT 59.959 66.667 0.00 0.00 35.59 4.34
2919 5315 2.066999 GTCCCAGCTCCTACCAGGG 61.067 68.421 0.00 0.00 40.98 4.45
2920 5316 2.066999 GGTCCCAGCTCCTACCAGG 61.067 68.421 3.53 0.00 36.46 4.45
3025 5421 2.790791 CCGCCTCTTCCTCTCGCAT 61.791 63.158 0.00 0.00 0.00 4.73
3052 5448 1.700955 CTAACCCTAGCCGCCTCTTA 58.299 55.000 0.00 0.00 0.00 2.10
3118 5515 8.095792 AGGAGATGTATCAATCTAATGAAGCAG 58.904 37.037 0.00 0.00 37.03 4.24
3366 5764 1.279527 CGCGAAGGTGTTTGACGCTA 61.280 55.000 0.00 0.00 45.64 4.26
3437 5835 1.077993 ACTCTTCTACCTGGAGGCTGT 59.922 52.381 0.00 0.00 39.32 4.40
3594 5992 4.704103 AGGGTCGGCCTGCTCAGA 62.704 66.667 5.77 0.00 34.45 3.27
3700 6098 0.248289 AAACGGCCATGTACTACGCT 59.752 50.000 2.24 0.00 0.00 5.07
3718 6116 1.307866 GGGACCCCAGGATCTCCAA 60.308 63.158 0.00 0.00 38.89 3.53
3767 6165 0.882474 CTCTTCGTCGGTGGACTTCT 59.118 55.000 0.00 0.00 41.16 2.85
3979 6377 1.453762 GGTACTACGCCCTCGAGCAT 61.454 60.000 6.99 0.00 39.41 3.79
4015 6413 2.043248 GCCTCCTACCACCTCCGA 60.043 66.667 0.00 0.00 0.00 4.55
4225 6623 2.240500 GGATCGCGGTCATGCTGAC 61.241 63.158 22.78 0.00 46.23 3.51
4240 6638 2.044946 GCGGGGCACTTCTTGGAT 60.045 61.111 0.00 0.00 0.00 3.41
4241 6639 4.344865 GGCGGGGCACTTCTTGGA 62.345 66.667 0.00 0.00 0.00 3.53
4244 6642 4.394712 CTCGGCGGGGCACTTCTT 62.395 66.667 7.21 0.00 0.00 2.52
4361 6759 4.675029 CTTCCCACCGTCGCCGTT 62.675 66.667 0.00 0.00 0.00 4.44
5444 11155 0.837691 TCATGTCTGCTCCACCACCT 60.838 55.000 0.00 0.00 0.00 4.00
5629 11340 3.629220 GGAGACCTAACCCTAGCCA 57.371 57.895 0.00 0.00 0.00 4.75
5689 11402 7.255766 GGAGAGATGTATCACTCTAATGAAGCA 60.256 40.741 15.58 0.00 42.51 3.91
5969 11685 6.261603 TGTGCATTCAGATGAAAGACATATCC 59.738 38.462 0.00 0.00 39.56 2.59
5996 11712 9.812347 ATAATATGCAAATCCATCCTGAAGTAA 57.188 29.630 0.00 0.00 0.00 2.24
6090 11807 6.485648 GTCTACCACAACAACTTAACCAAGAT 59.514 38.462 0.00 0.00 35.60 2.40
6152 11869 6.689561 TGGAGGGACTGTAATATCCTAAAGA 58.310 40.000 0.00 0.00 41.55 2.52
6253 11972 0.400594 CCGGCCTAATAAAGAGGGGG 59.599 60.000 0.00 0.00 34.35 5.40
6356 12075 6.373216 TCGGGATAACTTTACACCAGATTTTG 59.627 38.462 0.00 0.00 0.00 2.44
6444 12163 1.065709 ACAACACACCTGAACTTCCGT 60.066 47.619 0.00 0.00 0.00 4.69
6448 12167 5.722021 AAAGAAACAACACACCTGAACTT 57.278 34.783 0.00 0.00 0.00 2.66
6527 12247 8.204836 AGTTCTAACTTATGAGTGTGACAAAGT 58.795 33.333 0.00 0.00 35.21 2.66
6673 12393 4.266714 TGACAATATTTTCTCCGGGGTTC 58.733 43.478 0.00 0.00 0.00 3.62
6824 12558 8.465999 CCAAGATTTACAAACATACAAGCCATA 58.534 33.333 0.00 0.00 0.00 2.74
6825 12559 7.039082 ACCAAGATTTACAAACATACAAGCCAT 60.039 33.333 0.00 0.00 0.00 4.40
6845 12579 6.437477 ACACTGATAGAGATAACACACCAAGA 59.563 38.462 0.00 0.00 0.00 3.02
6872 12606 5.453567 AAGTTCAAAGATGTAAGTTGGGC 57.546 39.130 0.00 0.00 0.00 5.36
6896 12630 3.448301 GCTGGGATGAGAGATATCTGAGG 59.552 52.174 10.74 0.00 0.00 3.86
6951 12685 9.088512 GTTAATGTATATGCCACTGATACTAGC 57.911 37.037 0.00 0.00 0.00 3.42
7002 12736 3.181445 ACTGTCAGGAACCTGCAACATAA 60.181 43.478 15.20 0.00 43.31 1.90
7041 12775 1.088340 CCATGTCAGCTCGCAGAAGG 61.088 60.000 0.00 0.00 34.09 3.46
7064 12798 5.305644 AGTTCCTGAAGTCACACTGATAAGT 59.694 40.000 0.00 0.00 0.00 2.24
7067 12801 5.304357 TCAAGTTCCTGAAGTCACACTGATA 59.696 40.000 0.00 0.00 0.00 2.15
7096 12830 5.928839 TCGAGATATAAAAGCATTCTCTGGC 59.071 40.000 0.00 0.00 32.50 4.85
7124 12858 8.506168 TGTAAGATATCATCAAAACCCTCAAC 57.494 34.615 5.32 0.00 0.00 3.18
7131 12865 9.624697 TTGCTTGTTGTAAGATATCATCAAAAC 57.375 29.630 5.32 3.85 0.00 2.43
7279 13013 9.531942 CTAAGACATATATGATGAAGAGGATGC 57.468 37.037 19.63 0.00 0.00 3.91
7353 13087 5.104693 TCTCCTTTAAAGCCATCGGTATTGA 60.105 40.000 9.86 0.00 0.00 2.57
7360 13094 5.048713 ACTGTTTTCTCCTTTAAAGCCATCG 60.049 40.000 9.86 0.00 0.00 3.84
7372 13106 1.947456 GAAACGGCACTGTTTTCTCCT 59.053 47.619 8.88 0.00 41.89 3.69
7556 13290 5.357032 ACTTAGCTTGGGATACATTTTTCCG 59.643 40.000 0.00 0.00 39.74 4.30
7846 13580 1.072965 CACCCCTTCTGCTCTTCAGTT 59.927 52.381 0.00 0.00 43.32 3.16
8084 13818 6.580041 CAGAATTGACAAACTGTGCTTACATC 59.420 38.462 13.90 0.00 0.00 3.06
8135 13869 8.465201 AGAGACTTTTCCAATAAATCTCATTGC 58.535 33.333 0.00 0.00 34.79 3.56
8172 13906 1.975660 TAAGTGAAACCACTGCCACC 58.024 50.000 0.00 0.00 43.60 4.61
8222 13956 3.971150 AGAACAGACTTCGAGACAACAG 58.029 45.455 0.00 0.00 0.00 3.16
8379 14115 0.971959 TCATGGCCCAGTTTGATGGC 60.972 55.000 0.00 0.00 44.59 4.40
8380 14116 1.479323 CTTCATGGCCCAGTTTGATGG 59.521 52.381 0.00 0.00 40.29 3.51
8658 14395 3.214328 AGAGGCAAACATGTCGTTTTCT 58.786 40.909 0.00 0.00 45.79 2.52
8792 14529 5.125417 ACATACCAATAAACTGTCACCATGC 59.875 40.000 0.00 0.00 0.00 4.06
8811 14548 8.511321 TCATCCAATTGTGTAGTTCAAACATAC 58.489 33.333 4.43 0.00 0.00 2.39


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.