Multiple sequence alignment - TraesCS2B01G317000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G317000 chr2B 100.000 3600 0 0 1 3600 452594823 452598422 0.000000e+00 6649.0
1 TraesCS2B01G317000 chr2B 84.848 198 18 8 2967 3163 788528156 788528342 4.740000e-44 189.0
2 TraesCS2B01G317000 chr2B 91.304 69 4 2 2833 2900 465141756 465141823 3.830000e-15 93.5
3 TraesCS2B01G317000 chr2B 91.045 67 6 0 2834 2900 77295486 77295420 1.380000e-14 91.6
4 TraesCS2B01G317000 chr2D 94.886 2014 63 16 614 2606 381867473 381869467 0.000000e+00 3112.0
5 TraesCS2B01G317000 chr2D 79.014 710 89 32 2937 3597 123324732 123325430 7.140000e-117 431.0
6 TraesCS2B01G317000 chr2D 88.608 79 9 0 2757 2835 381869459 381869537 2.960000e-16 97.1
7 TraesCS2B01G317000 chr2A 94.546 1797 67 14 835 2606 516238843 516240633 0.000000e+00 2747.0
8 TraesCS2B01G317000 chr2A 90.281 391 21 8 437 818 516238118 516238500 2.500000e-136 496.0
9 TraesCS2B01G317000 chr2A 89.055 201 22 0 237 437 516237743 516237943 2.150000e-62 250.0
10 TraesCS2B01G317000 chr2A 84.889 225 18 7 1 214 516237534 516237753 2.820000e-51 213.0
11 TraesCS2B01G317000 chr2A 91.139 79 7 0 2757 2835 516240625 516240703 1.370000e-19 108.0
12 TraesCS2B01G317000 chr5B 85.392 753 101 6 1821 2564 565533105 565532353 0.000000e+00 773.0
13 TraesCS2B01G317000 chr5B 99.342 152 1 0 2605 2756 242138550 242138701 3.540000e-70 276.0
14 TraesCS2B01G317000 chr5B 99.338 151 1 0 2607 2757 602841678 602841828 1.270000e-69 274.0
15 TraesCS2B01G317000 chr5B 96.000 150 6 0 2607 2756 48861751 48861602 9.980000e-61 244.0
16 TraesCS2B01G317000 chr5D 84.788 756 102 7 1821 2564 460087818 460087064 0.000000e+00 747.0
17 TraesCS2B01G317000 chr4A 80.218 642 84 23 2995 3600 727087893 727088527 3.300000e-120 442.0
18 TraesCS2B01G317000 chr7D 82.200 500 83 6 2068 2564 89306862 89307358 3.320000e-115 425.0
19 TraesCS2B01G317000 chr7D 82.051 234 40 2 1061 1293 89305582 89305814 7.880000e-47 198.0
20 TraesCS2B01G317000 chr7D 91.045 67 6 0 2834 2900 597096414 597096348 1.380000e-14 91.6
21 TraesCS2B01G317000 chr7A 76.537 797 103 43 2846 3595 28420849 28420090 3.420000e-95 359.0
22 TraesCS2B01G317000 chr3B 83.463 387 40 8 2833 3204 100983869 100983492 4.450000e-89 339.0
23 TraesCS2B01G317000 chr3B 96.000 150 6 0 2607 2756 40214247 40214098 9.980000e-61 244.0
24 TraesCS2B01G317000 chr6A 81.454 399 43 17 2833 3207 12482267 12481876 7.560000e-77 298.0
25 TraesCS2B01G317000 chr7B 100.000 151 0 0 2606 2756 577232628 577232778 2.740000e-71 279.0
26 TraesCS2B01G317000 chr7B 99.342 152 1 0 2605 2756 271250011 271250162 3.540000e-70 276.0
27 TraesCS2B01G317000 chr7B 99.338 151 1 0 2607 2757 77430158 77430008 1.270000e-69 274.0
28 TraesCS2B01G317000 chr7B 81.481 243 42 3 1057 1297 40258807 40259048 2.840000e-46 196.0
29 TraesCS2B01G317000 chr1A 99.338 151 1 0 2607 2757 552838267 552838117 1.270000e-69 274.0
30 TraesCS2B01G317000 chr1A 99.333 150 1 0 2607 2756 45587417 45587268 4.580000e-69 272.0
31 TraesCS2B01G317000 chr1B 92.537 67 5 0 2834 2900 6372963 6372897 2.960000e-16 97.1
32 TraesCS2B01G317000 chr1B 89.552 67 7 0 2834 2900 640569746 640569812 6.400000e-13 86.1
33 TraesCS2B01G317000 chr6B 91.045 67 6 0 2834 2900 76238326 76238260 1.380000e-14 91.6
34 TraesCS2B01G317000 chr5A 89.855 69 5 2 2833 2900 130223548 130223481 1.780000e-13 87.9
35 TraesCS2B01G317000 chr3A 88.732 71 8 0 2830 2900 396198920 396198850 1.780000e-13 87.9
36 TraesCS2B01G317000 chr3A 85.897 78 9 2 2824 2900 362555255 362555331 8.280000e-12 82.4
37 TraesCS2B01G317000 chr4D 83.333 72 10 2 315 385 9338712 9338642 8.340000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G317000 chr2B 452594823 452598422 3599 False 6649.00 6649 100.0000 1 3600 1 chr2B.!!$F1 3599
1 TraesCS2B01G317000 chr2D 381867473 381869537 2064 False 1604.55 3112 91.7470 614 2835 2 chr2D.!!$F2 2221
2 TraesCS2B01G317000 chr2D 123324732 123325430 698 False 431.00 431 79.0140 2937 3597 1 chr2D.!!$F1 660
3 TraesCS2B01G317000 chr2A 516237534 516240703 3169 False 762.80 2747 89.9820 1 2835 5 chr2A.!!$F1 2834
4 TraesCS2B01G317000 chr5B 565532353 565533105 752 True 773.00 773 85.3920 1821 2564 1 chr5B.!!$R2 743
5 TraesCS2B01G317000 chr5D 460087064 460087818 754 True 747.00 747 84.7880 1821 2564 1 chr5D.!!$R1 743
6 TraesCS2B01G317000 chr4A 727087893 727088527 634 False 442.00 442 80.2180 2995 3600 1 chr4A.!!$F1 605
7 TraesCS2B01G317000 chr7D 89305582 89307358 1776 False 311.50 425 82.1255 1061 2564 2 chr7D.!!$F1 1503
8 TraesCS2B01G317000 chr7A 28420090 28420849 759 True 359.00 359 76.5370 2846 3595 1 chr7A.!!$R1 749

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
214 226 0.248843 CTGACCCAGAAGAGAGCACC 59.751 60.000 0.00 0.00 32.44 5.01 F
227 239 0.536460 GAGCACCGTCCCCTCAAAAA 60.536 55.000 0.00 0.00 0.00 1.94 F
906 1426 1.381191 TCCTAGATCTGGCACGCCA 60.381 57.895 10.95 10.95 45.02 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2002 2609 1.749063 CAGTAGACATCGGTGTGGCTA 59.251 52.381 5.76 0.0 38.69 3.93 R
2006 2613 2.607187 GAACCAGTAGACATCGGTGTG 58.393 52.381 5.76 0.0 39.09 3.82 R
2723 3547 0.038618 CACACGACAAGGATGGACGA 60.039 55.000 0.00 0.0 35.53 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 6.489022 ACTCACTTAACATTCCAAAAGTACCC 59.511 38.462 0.00 0.00 31.20 3.69
155 167 1.203492 AGGGATATAAGGGAGGGCTGG 60.203 57.143 0.00 0.00 0.00 4.85
158 170 3.193782 GGATATAAGGGAGGGCTGGATT 58.806 50.000 0.00 0.00 0.00 3.01
160 172 4.788617 GGATATAAGGGAGGGCTGGATTTA 59.211 45.833 0.00 0.00 0.00 1.40
164 176 2.502745 AGGGAGGGCTGGATTTATCAA 58.497 47.619 0.00 0.00 0.00 2.57
170 182 4.451900 AGGGCTGGATTTATCAAGTAACG 58.548 43.478 0.00 0.00 30.27 3.18
201 213 5.016831 ACCCATTAAAGAATTGACTGACCC 58.983 41.667 0.00 0.00 0.00 4.46
203 215 5.126061 CCCATTAAAGAATTGACTGACCCAG 59.874 44.000 0.00 0.00 37.52 4.45
204 216 5.945784 CCATTAAAGAATTGACTGACCCAGA 59.054 40.000 0.45 0.00 35.18 3.86
205 217 6.434028 CCATTAAAGAATTGACTGACCCAGAA 59.566 38.462 0.45 0.00 35.18 3.02
206 218 7.362401 CCATTAAAGAATTGACTGACCCAGAAG 60.362 40.741 0.45 0.00 35.18 2.85
207 219 4.982241 AAGAATTGACTGACCCAGAAGA 57.018 40.909 0.45 0.00 35.18 2.87
208 220 4.550076 AGAATTGACTGACCCAGAAGAG 57.450 45.455 0.45 0.00 35.18 2.85
209 221 4.163427 AGAATTGACTGACCCAGAAGAGA 58.837 43.478 0.45 0.00 35.18 3.10
210 222 4.222588 AGAATTGACTGACCCAGAAGAGAG 59.777 45.833 0.45 0.00 35.18 3.20
211 223 1.261480 TGACTGACCCAGAAGAGAGC 58.739 55.000 0.45 0.00 35.18 4.09
212 224 1.261480 GACTGACCCAGAAGAGAGCA 58.739 55.000 0.45 0.00 35.18 4.26
213 225 0.972883 ACTGACCCAGAAGAGAGCAC 59.027 55.000 0.45 0.00 35.18 4.40
214 226 0.248843 CTGACCCAGAAGAGAGCACC 59.751 60.000 0.00 0.00 32.44 5.01
215 227 1.216710 GACCCAGAAGAGAGCACCG 59.783 63.158 0.00 0.00 0.00 4.94
216 228 1.534235 ACCCAGAAGAGAGCACCGT 60.534 57.895 0.00 0.00 0.00 4.83
217 229 1.216710 CCCAGAAGAGAGCACCGTC 59.783 63.158 0.00 0.00 0.00 4.79
218 230 1.216710 CCAGAAGAGAGCACCGTCC 59.783 63.158 0.00 0.00 0.00 4.79
219 231 1.216710 CAGAAGAGAGCACCGTCCC 59.783 63.158 0.00 0.00 0.00 4.46
220 232 1.985116 AGAAGAGAGCACCGTCCCC 60.985 63.158 0.00 0.00 0.00 4.81
221 233 1.985116 GAAGAGAGCACCGTCCCCT 60.985 63.158 0.00 0.00 0.00 4.79
222 234 1.950973 GAAGAGAGCACCGTCCCCTC 61.951 65.000 0.00 0.00 0.00 4.30
223 235 2.680352 GAGAGCACCGTCCCCTCA 60.680 66.667 0.00 0.00 0.00 3.86
224 236 2.203788 AGAGCACCGTCCCCTCAA 60.204 61.111 0.00 0.00 0.00 3.02
225 237 1.827399 GAGAGCACCGTCCCCTCAAA 61.827 60.000 0.00 0.00 0.00 2.69
226 238 1.072505 GAGCACCGTCCCCTCAAAA 59.927 57.895 0.00 0.00 0.00 2.44
227 239 0.536460 GAGCACCGTCCCCTCAAAAA 60.536 55.000 0.00 0.00 0.00 1.94
248 260 4.802876 AAAAGAAACGAAGAGAGCACTG 57.197 40.909 0.00 0.00 0.00 3.66
294 306 6.183360 ACAAGACACTCCAAACAACATTAAGG 60.183 38.462 0.00 0.00 0.00 2.69
306 318 6.715347 ACAACATTAAGGAAAAAGAGCACT 57.285 33.333 0.00 0.00 0.00 4.40
312 324 8.951243 ACATTAAGGAAAAAGAGCACTAATCTC 58.049 33.333 0.00 0.00 0.00 2.75
314 326 4.508662 AGGAAAAAGAGCACTAATCTCGG 58.491 43.478 0.00 0.00 35.79 4.63
327 339 6.219473 CACTAATCTCGGAGTAGCAATCAAT 58.781 40.000 4.69 0.00 34.14 2.57
328 340 6.145209 CACTAATCTCGGAGTAGCAATCAATG 59.855 42.308 4.69 0.00 34.14 2.82
332 344 1.860950 CGGAGTAGCAATCAATGGTCG 59.139 52.381 0.00 0.00 40.93 4.79
361 373 9.554395 AAAATCGACTGACCCAAATTTAATTTT 57.446 25.926 0.00 0.00 0.00 1.82
362 374 8.532977 AATCGACTGACCCAAATTTAATTTTG 57.467 30.769 13.48 13.48 36.55 2.44
370 382 6.360618 ACCCAAATTTAATTTTGAGGCAACA 58.639 32.000 19.52 0.00 38.58 3.33
374 386 8.997323 CCAAATTTAATTTTGAGGCAACATACA 58.003 29.630 19.52 0.00 38.58 2.29
409 421 4.425577 ACCTTCTTTTTGATAGCTTGCG 57.574 40.909 0.00 0.00 0.00 4.85
428 440 5.788055 TGCGTGTAATGTGTAGGTTAATG 57.212 39.130 0.00 0.00 0.00 1.90
433 445 7.398746 CGTGTAATGTGTAGGTTAATGACATG 58.601 38.462 0.00 0.00 0.00 3.21
476 663 3.995199 TGACAGCACTTAGAGGAAGTTG 58.005 45.455 0.00 0.00 46.79 3.16
486 673 7.373493 CACTTAGAGGAAGTTGCAATCATTTT 58.627 34.615 0.59 0.00 46.79 1.82
490 677 6.453092 AGAGGAAGTTGCAATCATTTTTCAG 58.547 36.000 0.59 0.00 0.00 3.02
494 681 6.647895 GGAAGTTGCAATCATTTTTCAGTCAT 59.352 34.615 0.59 0.00 0.00 3.06
496 683 8.441312 AAGTTGCAATCATTTTTCAGTCATTT 57.559 26.923 0.59 0.00 0.00 2.32
652 839 3.502211 GCACCTGATATTATTGGAACCCG 59.498 47.826 4.37 0.00 0.00 5.28
701 888 5.351458 CACTACCAATCGATGAGTCATGAA 58.649 41.667 11.20 0.00 0.00 2.57
703 890 3.535561 ACCAATCGATGAGTCATGAACC 58.464 45.455 11.20 0.00 0.00 3.62
704 891 3.055167 ACCAATCGATGAGTCATGAACCA 60.055 43.478 11.20 0.00 0.00 3.67
705 892 4.132336 CCAATCGATGAGTCATGAACCAT 58.868 43.478 11.20 9.96 0.00 3.55
706 893 4.024302 CCAATCGATGAGTCATGAACCATG 60.024 45.833 11.20 2.23 42.60 3.66
740 931 4.327087 CGCATTTCAGACCAAATAAAAGGC 59.673 41.667 0.00 0.00 34.37 4.35
877 1397 2.739292 TCGGCGCATCTTGTATTCTAC 58.261 47.619 10.83 0.00 0.00 2.59
880 1400 3.914966 CGGCGCATCTTGTATTCTACTAG 59.085 47.826 10.83 0.00 33.69 2.57
881 1401 4.556898 CGGCGCATCTTGTATTCTACTAGT 60.557 45.833 10.83 0.00 34.01 2.57
882 1402 5.334646 CGGCGCATCTTGTATTCTACTAGTA 60.335 44.000 10.83 1.89 34.01 1.82
883 1403 5.857517 GGCGCATCTTGTATTCTACTAGTAC 59.142 44.000 10.83 0.00 34.01 2.73
884 1404 5.564504 GCGCATCTTGTATTCTACTAGTACG 59.435 44.000 0.30 0.00 34.01 3.67
885 1405 6.565435 GCGCATCTTGTATTCTACTAGTACGA 60.565 42.308 0.30 0.00 34.01 3.43
886 1406 7.350467 CGCATCTTGTATTCTACTAGTACGAA 58.650 38.462 13.60 13.60 34.01 3.85
906 1426 1.381191 TCCTAGATCTGGCACGCCA 60.381 57.895 10.95 10.95 45.02 5.69
940 1462 7.630606 CGCAGTTTAAACATTTTCAGAACAAAC 59.369 33.333 20.06 0.00 0.00 2.93
956 1478 1.398390 CAAACCATAGCCGAGCAAGAC 59.602 52.381 0.00 0.00 0.00 3.01
1349 1885 5.293814 CCTTGTCTGTGATTATTGCTCTGAG 59.706 44.000 0.00 0.00 0.00 3.35
1494 2046 5.742838 GCAAATTTTCTGTTGGATTCCACCT 60.743 40.000 4.45 0.00 30.78 4.00
1666 2264 3.467226 GGTTCCCCGGAGATCGCA 61.467 66.667 0.73 0.00 37.59 5.10
1719 2317 3.369471 CGATCCAAGGTACACCAATGACT 60.369 47.826 0.38 0.00 38.89 3.41
1721 2319 2.708861 TCCAAGGTACACCAATGACTGT 59.291 45.455 0.38 0.00 38.89 3.55
1735 2341 1.413767 GACTGTAGCGACGCACATGG 61.414 60.000 23.70 14.35 0.00 3.66
1757 2363 6.539173 TGGGACATGTGAAAAATAGTACACT 58.461 36.000 1.15 0.00 34.81 3.55
1858 2465 3.315949 GGGGTGCACTCGGTGGTA 61.316 66.667 17.98 0.00 33.64 3.25
2006 2613 3.132084 GCATGGTGCCCATTAGCC 58.868 61.111 4.15 0.00 42.23 3.93
2272 3090 2.121275 TTCCACCCCATGACCCCA 60.121 61.111 0.00 0.00 0.00 4.96
2320 3138 4.681978 GAGGACGCGGTGGTGCTT 62.682 66.667 12.47 0.00 38.82 3.91
2600 3424 1.001633 GCAAGACCCACTCCGAGTAAA 59.998 52.381 0.00 0.00 0.00 2.01
2601 3425 2.685100 CAAGACCCACTCCGAGTAAAC 58.315 52.381 0.00 0.00 0.00 2.01
2602 3426 2.299297 CAAGACCCACTCCGAGTAAACT 59.701 50.000 0.00 0.00 0.00 2.66
2603 3427 3.446442 AGACCCACTCCGAGTAAACTA 57.554 47.619 0.00 0.00 0.00 2.24
2604 3428 3.771216 AGACCCACTCCGAGTAAACTAA 58.229 45.455 0.00 0.00 0.00 2.24
2605 3429 4.154942 AGACCCACTCCGAGTAAACTAAA 58.845 43.478 0.00 0.00 0.00 1.85
2606 3430 4.021632 AGACCCACTCCGAGTAAACTAAAC 60.022 45.833 0.00 0.00 0.00 2.01
2607 3431 3.248266 CCCACTCCGAGTAAACTAAACG 58.752 50.000 0.00 0.00 0.00 3.60
2608 3432 3.057315 CCCACTCCGAGTAAACTAAACGA 60.057 47.826 0.00 0.00 0.00 3.85
2609 3433 4.549458 CCACTCCGAGTAAACTAAACGAA 58.451 43.478 0.00 0.00 0.00 3.85
2610 3434 4.984161 CCACTCCGAGTAAACTAAACGAAA 59.016 41.667 0.00 0.00 0.00 3.46
2611 3435 5.107722 CCACTCCGAGTAAACTAAACGAAAC 60.108 44.000 0.00 0.00 0.00 2.78
2612 3436 5.689068 CACTCCGAGTAAACTAAACGAAACT 59.311 40.000 0.00 0.00 0.00 2.66
2613 3437 6.857964 CACTCCGAGTAAACTAAACGAAACTA 59.142 38.462 0.00 0.00 0.00 2.24
2614 3438 6.858478 ACTCCGAGTAAACTAAACGAAACTAC 59.142 38.462 0.00 0.00 0.00 2.73
2615 3439 6.970484 TCCGAGTAAACTAAACGAAACTACT 58.030 36.000 0.00 0.00 0.00 2.57
2616 3440 6.857964 TCCGAGTAAACTAAACGAAACTACTG 59.142 38.462 0.00 0.00 0.00 2.74
2617 3441 6.088616 CCGAGTAAACTAAACGAAACTACTGG 59.911 42.308 0.00 0.00 0.00 4.00
2618 3442 6.088616 CGAGTAAACTAAACGAAACTACTGGG 59.911 42.308 0.00 0.00 0.00 4.45
2619 3443 5.698089 AGTAAACTAAACGAAACTACTGGGC 59.302 40.000 0.00 0.00 0.00 5.36
2620 3444 2.680577 ACTAAACGAAACTACTGGGCG 58.319 47.619 0.00 0.00 0.00 6.13
2621 3445 2.297033 ACTAAACGAAACTACTGGGCGA 59.703 45.455 0.00 0.00 0.00 5.54
2622 3446 2.243602 AAACGAAACTACTGGGCGAA 57.756 45.000 0.00 0.00 0.00 4.70
2623 3447 1.505425 AACGAAACTACTGGGCGAAC 58.495 50.000 0.00 0.00 0.00 3.95
2624 3448 0.665369 ACGAAACTACTGGGCGAACG 60.665 55.000 0.00 0.00 0.00 3.95
2625 3449 0.387622 CGAAACTACTGGGCGAACGA 60.388 55.000 0.00 0.00 0.00 3.85
2626 3450 1.066136 GAAACTACTGGGCGAACGAC 58.934 55.000 0.00 0.00 0.00 4.34
2627 3451 0.390124 AAACTACTGGGCGAACGACA 59.610 50.000 1.79 0.00 0.00 4.35
2628 3452 0.319297 AACTACTGGGCGAACGACAC 60.319 55.000 1.79 0.00 0.00 3.67
2629 3453 1.177256 ACTACTGGGCGAACGACACT 61.177 55.000 1.79 0.00 0.00 3.55
2630 3454 0.732880 CTACTGGGCGAACGACACTG 60.733 60.000 1.79 0.18 0.00 3.66
2631 3455 2.758770 TACTGGGCGAACGACACTGC 62.759 60.000 1.79 0.00 0.00 4.40
2632 3456 4.980805 TGGGCGAACGACACTGCC 62.981 66.667 1.79 0.00 46.82 4.85
2651 3475 2.824041 GGCCGAACCATGCACGAT 60.824 61.111 0.00 0.00 38.86 3.73
2652 3476 2.404789 GCCGAACCATGCACGATG 59.595 61.111 0.00 0.00 0.00 3.84
2658 3482 4.152644 CCATGCACGATGGCTGAT 57.847 55.556 0.00 0.00 45.58 2.90
2659 3483 2.411535 CCATGCACGATGGCTGATT 58.588 52.632 0.00 0.00 45.58 2.57
2660 3484 0.030235 CCATGCACGATGGCTGATTG 59.970 55.000 0.00 0.00 45.58 2.67
2661 3485 1.018910 CATGCACGATGGCTGATTGA 58.981 50.000 0.00 0.00 34.04 2.57
2662 3486 1.402613 CATGCACGATGGCTGATTGAA 59.597 47.619 0.00 0.00 34.04 2.69
2663 3487 0.804364 TGCACGATGGCTGATTGAAC 59.196 50.000 0.00 0.00 34.04 3.18
2664 3488 0.247814 GCACGATGGCTGATTGAACG 60.248 55.000 0.00 0.00 0.00 3.95
2665 3489 0.374758 CACGATGGCTGATTGAACGG 59.625 55.000 0.00 0.00 0.00 4.44
2666 3490 1.353103 CGATGGCTGATTGAACGGC 59.647 57.895 0.00 0.00 40.94 5.68
2667 3491 1.091771 CGATGGCTGATTGAACGGCT 61.092 55.000 0.00 0.00 41.36 5.52
2668 3492 1.098050 GATGGCTGATTGAACGGCTT 58.902 50.000 0.00 0.00 41.36 4.35
2669 3493 0.813184 ATGGCTGATTGAACGGCTTG 59.187 50.000 0.00 0.00 41.36 4.01
2670 3494 0.250684 TGGCTGATTGAACGGCTTGA 60.251 50.000 0.00 0.00 41.36 3.02
2671 3495 1.098050 GGCTGATTGAACGGCTTGAT 58.902 50.000 0.00 0.00 41.36 2.57
2672 3496 2.288666 GGCTGATTGAACGGCTTGATA 58.711 47.619 0.00 0.00 41.36 2.15
2673 3497 2.032178 GGCTGATTGAACGGCTTGATAC 59.968 50.000 0.00 0.00 41.36 2.24
2674 3498 2.677836 GCTGATTGAACGGCTTGATACA 59.322 45.455 0.00 0.00 38.89 2.29
2675 3499 3.242543 GCTGATTGAACGGCTTGATACAG 60.243 47.826 0.00 0.00 38.89 2.74
2676 3500 3.935203 CTGATTGAACGGCTTGATACAGT 59.065 43.478 0.00 0.00 0.00 3.55
2677 3501 5.079689 TGATTGAACGGCTTGATACAGTA 57.920 39.130 0.00 0.00 0.00 2.74
2678 3502 4.868171 TGATTGAACGGCTTGATACAGTAC 59.132 41.667 0.00 0.00 0.00 2.73
2679 3503 3.945981 TGAACGGCTTGATACAGTACA 57.054 42.857 0.00 0.00 0.00 2.90
2680 3504 4.465632 TGAACGGCTTGATACAGTACAT 57.534 40.909 0.00 0.00 0.00 2.29
2681 3505 4.430007 TGAACGGCTTGATACAGTACATC 58.570 43.478 0.00 0.00 0.00 3.06
2682 3506 4.159693 TGAACGGCTTGATACAGTACATCT 59.840 41.667 0.00 0.00 0.00 2.90
2683 3507 4.737855 ACGGCTTGATACAGTACATCTT 57.262 40.909 0.00 0.00 0.00 2.40
2684 3508 4.433615 ACGGCTTGATACAGTACATCTTG 58.566 43.478 0.00 0.00 0.00 3.02
2685 3509 4.081642 ACGGCTTGATACAGTACATCTTGT 60.082 41.667 0.00 0.00 0.00 3.16
2686 3510 4.268644 CGGCTTGATACAGTACATCTTGTG 59.731 45.833 0.00 0.00 0.00 3.33
2687 3511 5.178797 GGCTTGATACAGTACATCTTGTGT 58.821 41.667 0.00 0.00 44.95 3.72
2688 3512 6.338146 GGCTTGATACAGTACATCTTGTGTA 58.662 40.000 0.00 0.00 42.29 2.90
2689 3513 6.816640 GGCTTGATACAGTACATCTTGTGTAA 59.183 38.462 0.00 0.00 44.52 2.41
2690 3514 7.333423 GGCTTGATACAGTACATCTTGTGTAAA 59.667 37.037 0.00 0.00 44.52 2.01
2691 3515 8.883731 GCTTGATACAGTACATCTTGTGTAAAT 58.116 33.333 0.00 0.00 44.52 1.40
2693 3517 8.716646 TGATACAGTACATCTTGTGTAAATGG 57.283 34.615 0.00 0.00 44.52 3.16
2694 3518 8.536175 TGATACAGTACATCTTGTGTAAATGGA 58.464 33.333 0.00 0.00 44.52 3.41
2695 3519 8.718102 ATACAGTACATCTTGTGTAAATGGAC 57.282 34.615 0.00 0.00 44.52 4.02
2696 3520 5.637810 ACAGTACATCTTGTGTAAATGGACG 59.362 40.000 0.00 0.00 44.52 4.79
2697 3521 5.637810 CAGTACATCTTGTGTAAATGGACGT 59.362 40.000 0.00 0.00 44.52 4.34
2698 3522 5.867716 AGTACATCTTGTGTAAATGGACGTC 59.132 40.000 7.13 7.13 44.52 4.34
2699 3523 4.894784 ACATCTTGTGTAAATGGACGTCT 58.105 39.130 16.46 0.00 39.91 4.18
2700 3524 5.305585 ACATCTTGTGTAAATGGACGTCTT 58.694 37.500 16.46 4.56 39.91 3.01
2701 3525 5.179368 ACATCTTGTGTAAATGGACGTCTTG 59.821 40.000 16.46 0.00 39.91 3.02
2702 3526 4.951254 TCTTGTGTAAATGGACGTCTTGA 58.049 39.130 16.46 0.00 0.00 3.02
2703 3527 5.547465 TCTTGTGTAAATGGACGTCTTGAT 58.453 37.500 16.46 2.50 0.00 2.57
2704 3528 5.408299 TCTTGTGTAAATGGACGTCTTGATG 59.592 40.000 16.46 0.00 0.00 3.07
2705 3529 4.000325 TGTGTAAATGGACGTCTTGATGG 59.000 43.478 16.46 0.00 0.00 3.51
2706 3530 3.374058 GTGTAAATGGACGTCTTGATGGG 59.626 47.826 16.46 0.00 0.00 4.00
2707 3531 2.879103 AAATGGACGTCTTGATGGGT 57.121 45.000 16.46 0.00 0.00 4.51
2708 3532 3.992943 AAATGGACGTCTTGATGGGTA 57.007 42.857 16.46 0.00 0.00 3.69
2709 3533 3.543680 AATGGACGTCTTGATGGGTAG 57.456 47.619 16.46 0.00 0.00 3.18
2710 3534 0.535335 TGGACGTCTTGATGGGTAGC 59.465 55.000 16.46 0.00 0.00 3.58
2711 3535 0.535335 GGACGTCTTGATGGGTAGCA 59.465 55.000 16.46 0.00 0.00 3.49
2712 3536 1.139058 GGACGTCTTGATGGGTAGCAT 59.861 52.381 16.46 0.00 0.00 3.79
2713 3537 2.474816 GACGTCTTGATGGGTAGCATC 58.525 52.381 8.70 0.00 0.00 3.91
2714 3538 1.202417 ACGTCTTGATGGGTAGCATCG 60.202 52.381 0.00 0.00 32.04 3.84
2715 3539 1.202417 CGTCTTGATGGGTAGCATCGT 60.202 52.381 0.00 0.00 32.04 3.73
2716 3540 2.205074 GTCTTGATGGGTAGCATCGTG 58.795 52.381 0.00 0.00 32.04 4.35
2717 3541 1.831106 TCTTGATGGGTAGCATCGTGT 59.169 47.619 0.00 0.00 32.04 4.49
2718 3542 1.935873 CTTGATGGGTAGCATCGTGTG 59.064 52.381 0.00 0.00 32.04 3.82
2719 3543 0.901827 TGATGGGTAGCATCGTGTGT 59.098 50.000 0.00 0.00 32.04 3.72
2720 3544 2.104170 TGATGGGTAGCATCGTGTGTA 58.896 47.619 0.00 0.00 32.04 2.90
2721 3545 2.498078 TGATGGGTAGCATCGTGTGTAA 59.502 45.455 0.00 0.00 32.04 2.41
2722 3546 3.055747 TGATGGGTAGCATCGTGTGTAAA 60.056 43.478 0.00 0.00 32.04 2.01
2723 3547 3.620427 TGGGTAGCATCGTGTGTAAAT 57.380 42.857 0.00 0.00 0.00 1.40
2724 3548 3.527533 TGGGTAGCATCGTGTGTAAATC 58.472 45.455 0.00 0.00 0.00 2.17
2725 3549 2.538449 GGGTAGCATCGTGTGTAAATCG 59.462 50.000 0.00 0.00 0.00 3.34
2726 3550 3.184541 GGTAGCATCGTGTGTAAATCGT 58.815 45.455 0.00 0.00 0.00 3.73
2727 3551 3.242248 GGTAGCATCGTGTGTAAATCGTC 59.758 47.826 0.00 0.00 0.00 4.20
2728 3552 2.268298 AGCATCGTGTGTAAATCGTCC 58.732 47.619 0.00 0.00 0.00 4.79
2729 3553 1.996898 GCATCGTGTGTAAATCGTCCA 59.003 47.619 0.00 0.00 0.00 4.02
2730 3554 2.607635 GCATCGTGTGTAAATCGTCCAT 59.392 45.455 0.00 0.00 0.00 3.41
2731 3555 3.302480 GCATCGTGTGTAAATCGTCCATC 60.302 47.826 0.00 0.00 0.00 3.51
2732 3556 2.883574 TCGTGTGTAAATCGTCCATCC 58.116 47.619 0.00 0.00 0.00 3.51
2733 3557 2.494471 TCGTGTGTAAATCGTCCATCCT 59.506 45.455 0.00 0.00 0.00 3.24
2734 3558 3.056393 TCGTGTGTAAATCGTCCATCCTT 60.056 43.478 0.00 0.00 0.00 3.36
2735 3559 3.062099 CGTGTGTAAATCGTCCATCCTTG 59.938 47.826 0.00 0.00 0.00 3.61
2736 3560 4.000988 GTGTGTAAATCGTCCATCCTTGT 58.999 43.478 0.00 0.00 0.00 3.16
2737 3561 4.092968 GTGTGTAAATCGTCCATCCTTGTC 59.907 45.833 0.00 0.00 0.00 3.18
2738 3562 3.306166 GTGTAAATCGTCCATCCTTGTCG 59.694 47.826 0.00 0.00 0.00 4.35
2739 3563 2.762535 AAATCGTCCATCCTTGTCGT 57.237 45.000 0.00 0.00 0.00 4.34
2740 3564 2.010145 AATCGTCCATCCTTGTCGTG 57.990 50.000 0.00 0.00 0.00 4.35
2741 3565 0.895530 ATCGTCCATCCTTGTCGTGT 59.104 50.000 0.00 0.00 0.00 4.49
2742 3566 0.038618 TCGTCCATCCTTGTCGTGTG 60.039 55.000 0.00 0.00 0.00 3.82
2743 3567 0.319555 CGTCCATCCTTGTCGTGTGT 60.320 55.000 0.00 0.00 0.00 3.72
2744 3568 1.068125 CGTCCATCCTTGTCGTGTGTA 60.068 52.381 0.00 0.00 0.00 2.90
2745 3569 2.416836 CGTCCATCCTTGTCGTGTGTAT 60.417 50.000 0.00 0.00 0.00 2.29
2746 3570 3.181494 CGTCCATCCTTGTCGTGTGTATA 60.181 47.826 0.00 0.00 0.00 1.47
2747 3571 4.360563 GTCCATCCTTGTCGTGTGTATAG 58.639 47.826 0.00 0.00 0.00 1.31
2748 3572 3.123804 CCATCCTTGTCGTGTGTATAGC 58.876 50.000 0.00 0.00 0.00 2.97
2749 3573 3.430236 CCATCCTTGTCGTGTGTATAGCA 60.430 47.826 0.00 0.00 0.00 3.49
2750 3574 3.503827 TCCTTGTCGTGTGTATAGCAG 57.496 47.619 0.00 0.00 0.00 4.24
2751 3575 1.927174 CCTTGTCGTGTGTATAGCAGC 59.073 52.381 0.00 0.00 0.00 5.25
2752 3576 1.583856 CTTGTCGTGTGTATAGCAGCG 59.416 52.381 0.00 0.00 0.00 5.18
2753 3577 0.524414 TGTCGTGTGTATAGCAGCGT 59.476 50.000 0.00 0.00 0.00 5.07
2754 3578 1.068125 TGTCGTGTGTATAGCAGCGTT 60.068 47.619 0.00 0.00 0.00 4.84
2755 3579 1.582502 GTCGTGTGTATAGCAGCGTTC 59.417 52.381 0.00 0.00 0.00 3.95
2756 3580 1.471287 TCGTGTGTATAGCAGCGTTCT 59.529 47.619 0.00 0.00 0.00 3.01
2757 3581 2.679336 TCGTGTGTATAGCAGCGTTCTA 59.321 45.455 0.00 0.00 0.00 2.10
2758 3582 3.127376 TCGTGTGTATAGCAGCGTTCTAA 59.873 43.478 0.00 0.00 0.00 2.10
2790 3614 4.020573 CCATATTGCGTTATACTCCCTCCA 60.021 45.833 0.00 0.00 0.00 3.86
2797 3621 3.477530 GTTATACTCCCTCCACCAATGC 58.522 50.000 0.00 0.00 0.00 3.56
2798 3622 0.846693 ATACTCCCTCCACCAATGCC 59.153 55.000 0.00 0.00 0.00 4.40
2809 3633 5.037383 TCCACCAATGCCGTGTTATATAA 57.963 39.130 0.00 0.00 0.00 0.98
2818 3642 3.395639 CCGTGTTATATAACCCGTGCAT 58.604 45.455 23.04 0.00 35.73 3.96
2821 3645 4.983538 CGTGTTATATAACCCGTGCATACA 59.016 41.667 20.35 0.00 33.46 2.29
2835 3659 4.024893 CGTGCATACATGACCTTACCAATC 60.025 45.833 0.00 0.00 34.49 2.67
2836 3660 5.126067 GTGCATACATGACCTTACCAATCT 58.874 41.667 0.00 0.00 0.00 2.40
2837 3661 6.288294 GTGCATACATGACCTTACCAATCTA 58.712 40.000 0.00 0.00 0.00 1.98
2838 3662 6.936900 GTGCATACATGACCTTACCAATCTAT 59.063 38.462 0.00 0.00 0.00 1.98
2839 3663 8.094548 GTGCATACATGACCTTACCAATCTATA 58.905 37.037 0.00 0.00 0.00 1.31
2840 3664 8.655901 TGCATACATGACCTTACCAATCTATAA 58.344 33.333 0.00 0.00 0.00 0.98
2841 3665 9.672673 GCATACATGACCTTACCAATCTATAAT 57.327 33.333 0.00 0.00 0.00 1.28
2885 3709 7.641411 CCATTAAACTAATTCTCTTGACATGCG 59.359 37.037 0.00 0.00 0.00 4.73
2887 3711 2.939103 ACTAATTCTCTTGACATGCGGC 59.061 45.455 0.00 0.00 0.00 6.53
2888 3712 1.825090 AATTCTCTTGACATGCGGCA 58.175 45.000 4.58 4.58 0.00 5.69
2890 3714 2.689553 TTCTCTTGACATGCGGCATA 57.310 45.000 16.21 0.00 0.00 3.14
2900 3724 1.881324 CATGCGGCATATCCACATCAA 59.119 47.619 16.21 0.00 35.50 2.57
2920 3744 1.410850 CGGCCCCACTACCTCATCAT 61.411 60.000 0.00 0.00 0.00 2.45
2922 3746 1.131638 GCCCCACTACCTCATCATCA 58.868 55.000 0.00 0.00 0.00 3.07
2923 3747 1.701847 GCCCCACTACCTCATCATCAT 59.298 52.381 0.00 0.00 0.00 2.45
2928 3752 5.780282 CCCCACTACCTCATCATCATTACTA 59.220 44.000 0.00 0.00 0.00 1.82
2977 3820 0.396435 TCCACAACTCTTCACGGCAT 59.604 50.000 0.00 0.00 0.00 4.40
2985 3828 4.471904 ACTCTTCACGGCATCATTCTTA 57.528 40.909 0.00 0.00 0.00 2.10
2989 3832 6.375455 ACTCTTCACGGCATCATTCTTATTTT 59.625 34.615 0.00 0.00 0.00 1.82
2990 3833 7.094205 ACTCTTCACGGCATCATTCTTATTTTT 60.094 33.333 0.00 0.00 0.00 1.94
2993 3836 6.785191 TCACGGCATCATTCTTATTTTTCTC 58.215 36.000 0.00 0.00 0.00 2.87
3000 3843 9.379811 GCATCATTCTTATTTTTCTCGAGAATC 57.620 33.333 27.51 0.74 35.50 2.52
3009 3852 2.898729 TCTCGAGAATCCTTGATGGC 57.101 50.000 14.01 0.00 32.58 4.40
3030 3873 2.115343 ACGCCTCTTGATTTTCCTCC 57.885 50.000 0.00 0.00 0.00 4.30
3031 3874 1.630878 ACGCCTCTTGATTTTCCTCCT 59.369 47.619 0.00 0.00 0.00 3.69
3032 3875 2.012673 CGCCTCTTGATTTTCCTCCTG 58.987 52.381 0.00 0.00 0.00 3.86
3048 3891 2.889678 CTCCTGCTCTTTGCCTTCTTTT 59.110 45.455 0.00 0.00 42.00 2.27
3069 3912 6.844696 TTTATCTCCATCAAATCGCACTAC 57.155 37.500 0.00 0.00 0.00 2.73
3070 3913 4.679373 ATCTCCATCAAATCGCACTACT 57.321 40.909 0.00 0.00 0.00 2.57
3071 3914 5.791336 ATCTCCATCAAATCGCACTACTA 57.209 39.130 0.00 0.00 0.00 1.82
3072 3915 4.933330 TCTCCATCAAATCGCACTACTAC 58.067 43.478 0.00 0.00 0.00 2.73
3083 3926 2.614983 CGCACTACTACCTCTTCTCCTC 59.385 54.545 0.00 0.00 0.00 3.71
3086 3929 2.515005 ACTACTACCTCTTCTCCTCCCC 59.485 54.545 0.00 0.00 0.00 4.81
3087 3930 1.701422 ACTACCTCTTCTCCTCCCCT 58.299 55.000 0.00 0.00 0.00 4.79
3151 3999 0.620556 TCATCTCCCTTGGGCTTCAC 59.379 55.000 0.00 0.00 0.00 3.18
3204 4052 4.840271 TCTCATATCCATGGTGATGATGC 58.160 43.478 23.09 0.00 32.61 3.91
3232 4080 4.576053 TGAGTGGATGATTTTTATGAGGCG 59.424 41.667 0.00 0.00 0.00 5.52
3235 4092 4.335315 GTGGATGATTTTTATGAGGCGACA 59.665 41.667 0.00 0.00 0.00 4.35
3260 4117 0.901827 TGCGTATCTTCCTCCAGCAA 59.098 50.000 0.00 0.00 0.00 3.91
3278 4135 3.369471 AGCAATAGCGGTGACTAACACAT 60.369 43.478 0.00 0.00 46.41 3.21
3312 4169 2.110006 GATGGCCTCGCTTCCTCC 59.890 66.667 3.32 0.00 0.00 4.30
3327 4184 1.550524 TCCTCCCTCAAAGTCATCGTG 59.449 52.381 0.00 0.00 0.00 4.35
3352 4209 1.063190 TCTCCCTAAGCCATCGAGGAA 60.063 52.381 0.00 0.00 41.22 3.36
3370 4227 0.681564 AAACCGGCACCAACAACAGA 60.682 50.000 0.00 0.00 0.00 3.41
3375 4235 2.422597 CGGCACCAACAACAGAGATAA 58.577 47.619 0.00 0.00 0.00 1.75
3384 4244 5.308825 CAACAACAGAGATAACTCCAGGTT 58.691 41.667 0.00 0.00 43.53 3.50
3393 4253 1.407656 AACTCCAGGTTCACCTCGCA 61.408 55.000 0.00 0.00 46.65 5.10
3395 4255 2.743928 CCAGGTTCACCTCGCAGC 60.744 66.667 0.00 0.00 46.65 5.25
3396 4256 3.114616 CAGGTTCACCTCGCAGCG 61.115 66.667 9.06 9.06 46.65 5.18
3397 4257 3.303135 AGGTTCACCTCGCAGCGA 61.303 61.111 18.39 18.39 44.77 4.93
3459 4340 1.211818 CGCTCCATCGCAAGCTACTC 61.212 60.000 0.00 0.00 36.35 2.59
3492 4373 7.223777 GGACGACCTACTACTACAACTACTTAG 59.776 44.444 0.00 0.00 0.00 2.18
3493 4374 6.536941 ACGACCTACTACTACAACTACTTAGC 59.463 42.308 0.00 0.00 0.00 3.09
3494 4375 6.536582 CGACCTACTACTACAACTACTTAGCA 59.463 42.308 0.00 0.00 0.00 3.49
3511 4406 4.643387 ACCCGCTGACAACTGGCC 62.643 66.667 0.00 0.00 0.00 5.36
3571 4466 1.093159 CCATCAGCAGAAACAGAGGC 58.907 55.000 0.00 0.00 0.00 4.70
3574 4469 1.670406 CAGCAGAAACAGAGGCGCT 60.670 57.895 7.64 0.00 0.00 5.92
3589 4484 1.319541 GCGCTACTCCTATGACTCCA 58.680 55.000 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
125 137 7.126061 CCTCCCTTATATCCCTTTGTTTTTCT 58.874 38.462 0.00 0.00 0.00 2.52
133 145 2.989571 CAGCCCTCCCTTATATCCCTTT 59.010 50.000 0.00 0.00 0.00 3.11
142 154 3.675613 TGATAAATCCAGCCCTCCCTTA 58.324 45.455 0.00 0.00 0.00 2.69
145 157 2.175715 ACTTGATAAATCCAGCCCTCCC 59.824 50.000 0.00 0.00 0.00 4.30
155 167 6.255950 GTTGAAGCCCGTTACTTGATAAATC 58.744 40.000 0.00 0.00 0.00 2.17
158 170 4.004982 GGTTGAAGCCCGTTACTTGATAA 58.995 43.478 0.00 0.00 0.00 1.75
160 172 2.433436 GGTTGAAGCCCGTTACTTGAT 58.567 47.619 0.00 0.00 0.00 2.57
192 204 1.261480 GCTCTCTTCTGGGTCAGTCA 58.739 55.000 0.00 0.00 32.61 3.41
201 213 1.216710 GGGACGGTGCTCTCTTCTG 59.783 63.158 0.00 0.00 0.00 3.02
203 215 1.950973 GAGGGGACGGTGCTCTCTTC 61.951 65.000 20.80 0.00 0.00 2.87
204 216 1.985116 GAGGGGACGGTGCTCTCTT 60.985 63.158 20.80 0.00 0.00 2.85
205 217 2.363147 GAGGGGACGGTGCTCTCT 60.363 66.667 20.80 6.38 0.00 3.10
206 218 1.827399 TTTGAGGGGACGGTGCTCTC 61.827 60.000 21.21 21.21 0.00 3.20
207 219 1.415672 TTTTGAGGGGACGGTGCTCT 61.416 55.000 0.02 0.02 0.00 4.09
208 220 0.536460 TTTTTGAGGGGACGGTGCTC 60.536 55.000 0.00 0.00 0.00 4.26
209 221 1.534697 TTTTTGAGGGGACGGTGCT 59.465 52.632 0.00 0.00 0.00 4.40
210 222 4.167597 TTTTTGAGGGGACGGTGC 57.832 55.556 0.00 0.00 0.00 5.01
226 238 4.636206 ACAGTGCTCTCTTCGTTTCTTTTT 59.364 37.500 0.00 0.00 0.00 1.94
227 239 4.192317 ACAGTGCTCTCTTCGTTTCTTTT 58.808 39.130 0.00 0.00 0.00 2.27
228 240 3.798202 ACAGTGCTCTCTTCGTTTCTTT 58.202 40.909 0.00 0.00 0.00 2.52
229 241 3.460857 ACAGTGCTCTCTTCGTTTCTT 57.539 42.857 0.00 0.00 0.00 2.52
230 242 4.585955 TTACAGTGCTCTCTTCGTTTCT 57.414 40.909 0.00 0.00 0.00 2.52
231 243 5.652744 TTTTACAGTGCTCTCTTCGTTTC 57.347 39.130 0.00 0.00 0.00 2.78
256 268 2.365293 GTGTCTTGTTTTGGGCTGGATT 59.635 45.455 0.00 0.00 0.00 3.01
257 269 1.963515 GTGTCTTGTTTTGGGCTGGAT 59.036 47.619 0.00 0.00 0.00 3.41
258 270 1.064017 AGTGTCTTGTTTTGGGCTGGA 60.064 47.619 0.00 0.00 0.00 3.86
294 306 5.172205 ACTCCGAGATTAGTGCTCTTTTTC 58.828 41.667 1.33 0.00 0.00 2.29
306 318 5.070446 ACCATTGATTGCTACTCCGAGATTA 59.930 40.000 1.33 0.00 0.00 1.75
312 324 1.860950 CGACCATTGATTGCTACTCCG 59.139 52.381 0.00 0.00 0.00 4.63
314 326 3.179443 TCCGACCATTGATTGCTACTC 57.821 47.619 0.00 0.00 0.00 2.59
332 344 4.783764 ATTTGGGTCAGTCGATTTTTCC 57.216 40.909 0.00 0.00 0.00 3.13
361 373 5.869649 TTAGCTCTATGTATGTTGCCTCA 57.130 39.130 0.00 0.00 0.00 3.86
362 374 6.284459 AGTTTAGCTCTATGTATGTTGCCTC 58.716 40.000 0.00 0.00 0.00 4.70
400 412 4.119862 CCTACACATTACACGCAAGCTAT 58.880 43.478 0.00 0.00 45.62 2.97
407 419 5.349270 TGTCATTAACCTACACATTACACGC 59.651 40.000 0.00 0.00 0.00 5.34
409 421 7.201696 CCCATGTCATTAACCTACACATTACAC 60.202 40.741 0.00 0.00 0.00 2.90
433 445 1.952296 GGAACATGAGCATGACATCCC 59.048 52.381 16.70 6.55 41.20 3.85
527 714 4.733230 GCATGTTGCCTATGTTAATTCGCA 60.733 41.667 0.00 0.00 37.42 5.10
528 715 3.730715 GCATGTTGCCTATGTTAATTCGC 59.269 43.478 0.00 0.00 37.42 4.70
628 815 4.762251 GGGTTCCAATAATATCAGGTGCTC 59.238 45.833 0.00 0.00 0.00 4.26
652 839 2.048603 GGTCCAGGAATGCAGCCAC 61.049 63.158 10.65 0.96 0.00 5.01
701 888 2.342279 CGGTCACGGTGTCATGGT 59.658 61.111 8.17 0.00 36.18 3.55
703 890 1.298157 AATGCGGTCACGGTGTCATG 61.298 55.000 8.17 0.66 41.36 3.07
704 891 0.605319 AAATGCGGTCACGGTGTCAT 60.605 50.000 8.17 5.31 41.36 3.06
705 892 1.225376 GAAATGCGGTCACGGTGTCA 61.225 55.000 8.17 3.23 41.36 3.58
706 893 1.225376 TGAAATGCGGTCACGGTGTC 61.225 55.000 8.17 2.09 41.36 3.67
829 1023 6.500684 AGTGGACATAACACAAATAGCTTG 57.499 37.500 0.00 0.00 41.21 4.01
877 1397 4.453136 GCCAGATCTAGGACTTCGTACTAG 59.547 50.000 13.48 6.89 45.67 2.57
880 1400 2.950309 TGCCAGATCTAGGACTTCGTAC 59.050 50.000 13.48 0.00 0.00 3.67
881 1401 2.950309 GTGCCAGATCTAGGACTTCGTA 59.050 50.000 13.48 0.00 0.00 3.43
882 1402 1.751924 GTGCCAGATCTAGGACTTCGT 59.248 52.381 13.48 0.00 0.00 3.85
883 1403 1.268794 CGTGCCAGATCTAGGACTTCG 60.269 57.143 10.74 7.09 0.00 3.79
884 1404 1.537135 GCGTGCCAGATCTAGGACTTC 60.537 57.143 10.74 0.00 0.00 3.01
885 1405 0.461961 GCGTGCCAGATCTAGGACTT 59.538 55.000 10.74 0.00 0.00 3.01
886 1406 1.395826 GGCGTGCCAGATCTAGGACT 61.396 60.000 10.74 0.00 35.81 3.85
906 1426 2.258013 TTTAAACTGCGCGCTGGCT 61.258 52.632 35.78 25.49 36.88 4.75
914 1434 6.804534 TGTTCTGAAAATGTTTAAACTGCG 57.195 33.333 18.72 1.99 0.00 5.18
940 1462 2.240500 GCGTCTTGCTCGGCTATGG 61.241 63.158 0.00 0.00 41.73 2.74
956 1478 1.010350 GCGATGATTGCTCTTGGCG 60.010 57.895 0.00 0.00 45.43 5.69
1494 2046 3.849911 CCGACTGATTAGCTCAAGTTCA 58.150 45.455 0.00 0.00 32.14 3.18
1719 2317 2.125713 CCCATGTGCGTCGCTACA 60.126 61.111 19.50 19.59 0.00 2.74
1721 2319 1.955495 ATGTCCCATGTGCGTCGCTA 61.955 55.000 19.50 8.01 0.00 4.26
1735 2341 7.387948 AGTGAGTGTACTATTTTTCACATGTCC 59.612 37.037 0.00 0.00 37.87 4.02
2002 2609 1.749063 CAGTAGACATCGGTGTGGCTA 59.251 52.381 5.76 0.00 38.69 3.93
2006 2613 2.607187 GAACCAGTAGACATCGGTGTG 58.393 52.381 5.76 0.00 39.09 3.82
2600 3424 2.297033 TCGCCCAGTAGTTTCGTTTAGT 59.703 45.455 0.00 0.00 0.00 2.24
2601 3425 2.950433 TCGCCCAGTAGTTTCGTTTAG 58.050 47.619 0.00 0.00 0.00 1.85
2602 3426 3.059166 GTTCGCCCAGTAGTTTCGTTTA 58.941 45.455 0.00 0.00 0.00 2.01
2603 3427 1.869132 GTTCGCCCAGTAGTTTCGTTT 59.131 47.619 0.00 0.00 0.00 3.60
2604 3428 1.505425 GTTCGCCCAGTAGTTTCGTT 58.495 50.000 0.00 0.00 0.00 3.85
2605 3429 0.665369 CGTTCGCCCAGTAGTTTCGT 60.665 55.000 0.00 0.00 0.00 3.85
2606 3430 0.387622 TCGTTCGCCCAGTAGTTTCG 60.388 55.000 0.00 0.00 0.00 3.46
2607 3431 1.066136 GTCGTTCGCCCAGTAGTTTC 58.934 55.000 0.00 0.00 0.00 2.78
2608 3432 0.390124 TGTCGTTCGCCCAGTAGTTT 59.610 50.000 0.00 0.00 0.00 2.66
2609 3433 0.319297 GTGTCGTTCGCCCAGTAGTT 60.319 55.000 0.00 0.00 0.00 2.24
2610 3434 1.177256 AGTGTCGTTCGCCCAGTAGT 61.177 55.000 0.00 0.00 0.00 2.73
2611 3435 0.732880 CAGTGTCGTTCGCCCAGTAG 60.733 60.000 0.00 0.00 0.00 2.57
2612 3436 1.287815 CAGTGTCGTTCGCCCAGTA 59.712 57.895 0.00 0.00 0.00 2.74
2613 3437 2.029073 CAGTGTCGTTCGCCCAGT 59.971 61.111 0.00 0.00 0.00 4.00
2614 3438 3.414700 GCAGTGTCGTTCGCCCAG 61.415 66.667 0.00 0.00 0.00 4.45
2615 3439 4.980805 GGCAGTGTCGTTCGCCCA 62.981 66.667 0.00 0.00 38.67 5.36
2634 3458 2.824041 ATCGTGCATGGTTCGGCC 60.824 61.111 5.98 0.00 37.90 6.13
2635 3459 2.404789 CATCGTGCATGGTTCGGC 59.595 61.111 5.98 0.00 0.00 5.54
2636 3460 3.101209 CCATCGTGCATGGTTCGG 58.899 61.111 5.98 0.00 46.72 4.30
2642 3466 1.018910 TCAATCAGCCATCGTGCATG 58.981 50.000 0.00 0.00 0.00 4.06
2643 3467 1.402968 GTTCAATCAGCCATCGTGCAT 59.597 47.619 0.00 0.00 0.00 3.96
2644 3468 0.804364 GTTCAATCAGCCATCGTGCA 59.196 50.000 0.00 0.00 0.00 4.57
2645 3469 0.247814 CGTTCAATCAGCCATCGTGC 60.248 55.000 0.00 0.00 0.00 5.34
2646 3470 0.374758 CCGTTCAATCAGCCATCGTG 59.625 55.000 0.00 0.00 0.00 4.35
2647 3471 1.369091 GCCGTTCAATCAGCCATCGT 61.369 55.000 0.00 0.00 0.00 3.73
2648 3472 1.091771 AGCCGTTCAATCAGCCATCG 61.092 55.000 0.00 0.00 0.00 3.84
2649 3473 1.098050 AAGCCGTTCAATCAGCCATC 58.902 50.000 0.00 0.00 0.00 3.51
2650 3474 0.813184 CAAGCCGTTCAATCAGCCAT 59.187 50.000 0.00 0.00 0.00 4.40
2651 3475 0.250684 TCAAGCCGTTCAATCAGCCA 60.251 50.000 0.00 0.00 0.00 4.75
2652 3476 1.098050 ATCAAGCCGTTCAATCAGCC 58.902 50.000 0.00 0.00 0.00 4.85
2653 3477 2.677836 TGTATCAAGCCGTTCAATCAGC 59.322 45.455 0.00 0.00 0.00 4.26
2654 3478 3.935203 ACTGTATCAAGCCGTTCAATCAG 59.065 43.478 0.00 0.00 0.00 2.90
2655 3479 3.937814 ACTGTATCAAGCCGTTCAATCA 58.062 40.909 0.00 0.00 0.00 2.57
2656 3480 4.868171 TGTACTGTATCAAGCCGTTCAATC 59.132 41.667 0.00 0.00 0.00 2.67
2657 3481 4.827692 TGTACTGTATCAAGCCGTTCAAT 58.172 39.130 0.00 0.00 0.00 2.57
2658 3482 4.260139 TGTACTGTATCAAGCCGTTCAA 57.740 40.909 0.00 0.00 0.00 2.69
2659 3483 3.945981 TGTACTGTATCAAGCCGTTCA 57.054 42.857 0.00 0.00 0.00 3.18
2660 3484 4.683832 AGATGTACTGTATCAAGCCGTTC 58.316 43.478 0.00 0.00 0.00 3.95
2661 3485 4.737855 AGATGTACTGTATCAAGCCGTT 57.262 40.909 0.00 0.00 0.00 4.44
2662 3486 4.081642 ACAAGATGTACTGTATCAAGCCGT 60.082 41.667 0.00 0.00 0.00 5.68
2663 3487 4.268644 CACAAGATGTACTGTATCAAGCCG 59.731 45.833 0.00 0.00 0.00 5.52
2664 3488 5.178797 ACACAAGATGTACTGTATCAAGCC 58.821 41.667 0.00 0.00 40.88 4.35
2665 3489 7.827819 TTACACAAGATGTACTGTATCAAGC 57.172 36.000 0.00 0.00 43.71 4.01
2667 3491 9.161629 CCATTTACACAAGATGTACTGTATCAA 57.838 33.333 0.00 0.00 43.71 2.57
2668 3492 8.536175 TCCATTTACACAAGATGTACTGTATCA 58.464 33.333 0.00 0.00 43.71 2.15
2669 3493 8.818057 GTCCATTTACACAAGATGTACTGTATC 58.182 37.037 0.00 0.00 43.71 2.24
2670 3494 7.491372 CGTCCATTTACACAAGATGTACTGTAT 59.509 37.037 0.00 0.00 43.71 2.29
2671 3495 6.809689 CGTCCATTTACACAAGATGTACTGTA 59.190 38.462 0.00 0.00 43.71 2.74
2672 3496 5.637810 CGTCCATTTACACAAGATGTACTGT 59.362 40.000 0.00 0.00 43.71 3.55
2673 3497 5.637810 ACGTCCATTTACACAAGATGTACTG 59.362 40.000 0.00 0.00 43.71 2.74
2674 3498 5.790593 ACGTCCATTTACACAAGATGTACT 58.209 37.500 0.00 0.00 43.71 2.73
2675 3499 5.867716 AGACGTCCATTTACACAAGATGTAC 59.132 40.000 13.01 0.00 43.71 2.90
2676 3500 6.032956 AGACGTCCATTTACACAAGATGTA 57.967 37.500 13.01 0.00 43.19 2.29
2677 3501 4.894784 AGACGTCCATTTACACAAGATGT 58.105 39.130 13.01 0.00 46.06 3.06
2678 3502 5.408299 TCAAGACGTCCATTTACACAAGATG 59.592 40.000 13.01 0.00 0.00 2.90
2679 3503 5.547465 TCAAGACGTCCATTTACACAAGAT 58.453 37.500 13.01 0.00 0.00 2.40
2680 3504 4.951254 TCAAGACGTCCATTTACACAAGA 58.049 39.130 13.01 0.00 0.00 3.02
2681 3505 5.390885 CCATCAAGACGTCCATTTACACAAG 60.391 44.000 13.01 0.00 0.00 3.16
2682 3506 4.454161 CCATCAAGACGTCCATTTACACAA 59.546 41.667 13.01 0.00 0.00 3.33
2683 3507 4.000325 CCATCAAGACGTCCATTTACACA 59.000 43.478 13.01 0.00 0.00 3.72
2684 3508 3.374058 CCCATCAAGACGTCCATTTACAC 59.626 47.826 13.01 0.00 0.00 2.90
2685 3509 3.008594 ACCCATCAAGACGTCCATTTACA 59.991 43.478 13.01 0.00 0.00 2.41
2686 3510 3.606687 ACCCATCAAGACGTCCATTTAC 58.393 45.455 13.01 0.00 0.00 2.01
2687 3511 3.992943 ACCCATCAAGACGTCCATTTA 57.007 42.857 13.01 0.00 0.00 1.40
2688 3512 2.879103 ACCCATCAAGACGTCCATTT 57.121 45.000 13.01 0.00 0.00 2.32
2689 3513 2.420129 GCTACCCATCAAGACGTCCATT 60.420 50.000 13.01 0.00 0.00 3.16
2690 3514 1.139058 GCTACCCATCAAGACGTCCAT 59.861 52.381 13.01 0.00 0.00 3.41
2691 3515 0.535335 GCTACCCATCAAGACGTCCA 59.465 55.000 13.01 0.00 0.00 4.02
2692 3516 0.535335 TGCTACCCATCAAGACGTCC 59.465 55.000 13.01 0.00 0.00 4.79
2693 3517 2.604046 ATGCTACCCATCAAGACGTC 57.396 50.000 7.70 7.70 0.00 4.34
2701 3525 2.882927 TACACACGATGCTACCCATC 57.117 50.000 0.00 0.00 45.58 3.51
2702 3526 3.620427 TTTACACACGATGCTACCCAT 57.380 42.857 0.00 0.00 36.70 4.00
2703 3527 3.527533 GATTTACACACGATGCTACCCA 58.472 45.455 0.00 0.00 0.00 4.51
2704 3528 2.538449 CGATTTACACACGATGCTACCC 59.462 50.000 0.00 0.00 0.00 3.69
2705 3529 3.184541 ACGATTTACACACGATGCTACC 58.815 45.455 0.00 0.00 0.00 3.18
2706 3530 3.242248 GGACGATTTACACACGATGCTAC 59.758 47.826 0.00 0.00 0.00 3.58
2707 3531 3.119424 TGGACGATTTACACACGATGCTA 60.119 43.478 0.00 0.00 0.00 3.49
2708 3532 2.268298 GGACGATTTACACACGATGCT 58.732 47.619 0.00 0.00 0.00 3.79
2709 3533 1.996898 TGGACGATTTACACACGATGC 59.003 47.619 0.00 0.00 0.00 3.91
2710 3534 3.245284 GGATGGACGATTTACACACGATG 59.755 47.826 0.00 0.00 0.00 3.84
2711 3535 3.132289 AGGATGGACGATTTACACACGAT 59.868 43.478 0.00 0.00 0.00 3.73
2712 3536 2.494471 AGGATGGACGATTTACACACGA 59.506 45.455 0.00 0.00 0.00 4.35
2713 3537 2.888594 AGGATGGACGATTTACACACG 58.111 47.619 0.00 0.00 0.00 4.49
2714 3538 4.000988 ACAAGGATGGACGATTTACACAC 58.999 43.478 0.00 0.00 0.00 3.82
2715 3539 4.250464 GACAAGGATGGACGATTTACACA 58.750 43.478 0.00 0.00 0.00 3.72
2716 3540 3.306166 CGACAAGGATGGACGATTTACAC 59.694 47.826 0.00 0.00 34.21 2.90
2717 3541 3.056393 ACGACAAGGATGGACGATTTACA 60.056 43.478 0.00 0.00 35.53 2.41
2718 3542 3.306166 CACGACAAGGATGGACGATTTAC 59.694 47.826 0.00 0.00 35.53 2.01
2719 3543 3.056393 ACACGACAAGGATGGACGATTTA 60.056 43.478 0.00 0.00 35.53 1.40
2720 3544 2.289444 ACACGACAAGGATGGACGATTT 60.289 45.455 0.00 0.00 35.53 2.17
2721 3545 1.275291 ACACGACAAGGATGGACGATT 59.725 47.619 0.00 0.00 35.53 3.34
2722 3546 0.895530 ACACGACAAGGATGGACGAT 59.104 50.000 0.00 0.00 35.53 3.73
2723 3547 0.038618 CACACGACAAGGATGGACGA 60.039 55.000 0.00 0.00 35.53 4.20
2724 3548 0.319555 ACACACGACAAGGATGGACG 60.320 55.000 0.00 0.00 36.83 4.79
2725 3549 2.736144 TACACACGACAAGGATGGAC 57.264 50.000 0.00 0.00 0.00 4.02
2726 3550 3.181479 GCTATACACACGACAAGGATGGA 60.181 47.826 0.00 0.00 0.00 3.41
2727 3551 3.123804 GCTATACACACGACAAGGATGG 58.876 50.000 0.00 0.00 0.00 3.51
2728 3552 3.780902 TGCTATACACACGACAAGGATG 58.219 45.455 0.00 0.00 0.00 3.51
2729 3553 3.738281 GCTGCTATACACACGACAAGGAT 60.738 47.826 0.00 0.00 0.00 3.24
2730 3554 2.416836 GCTGCTATACACACGACAAGGA 60.417 50.000 0.00 0.00 0.00 3.36
2731 3555 1.927174 GCTGCTATACACACGACAAGG 59.073 52.381 0.00 0.00 0.00 3.61
2732 3556 1.583856 CGCTGCTATACACACGACAAG 59.416 52.381 0.00 0.00 0.00 3.16
2733 3557 1.068125 ACGCTGCTATACACACGACAA 60.068 47.619 0.00 0.00 0.00 3.18
2734 3558 0.524414 ACGCTGCTATACACACGACA 59.476 50.000 0.00 0.00 0.00 4.35
2735 3559 1.582502 GAACGCTGCTATACACACGAC 59.417 52.381 0.00 0.00 0.00 4.34
2736 3560 1.471287 AGAACGCTGCTATACACACGA 59.529 47.619 0.00 0.00 0.00 4.35
2737 3561 1.909376 AGAACGCTGCTATACACACG 58.091 50.000 0.00 0.00 0.00 4.49
2738 3562 4.863131 AGTTTAGAACGCTGCTATACACAC 59.137 41.667 0.00 0.00 36.23 3.82
2739 3563 5.068234 AGTTTAGAACGCTGCTATACACA 57.932 39.130 0.00 0.00 36.23 3.72
2740 3564 7.515957 TTTAGTTTAGAACGCTGCTATACAC 57.484 36.000 0.00 0.00 36.23 2.90
2741 3565 7.254319 GCATTTAGTTTAGAACGCTGCTATACA 60.254 37.037 0.00 0.00 36.23 2.29
2742 3566 7.064064 GCATTTAGTTTAGAACGCTGCTATAC 58.936 38.462 0.00 0.00 36.23 1.47
2743 3567 6.202188 GGCATTTAGTTTAGAACGCTGCTATA 59.798 38.462 0.00 0.00 36.23 1.31
2744 3568 5.007724 GGCATTTAGTTTAGAACGCTGCTAT 59.992 40.000 0.00 0.00 36.23 2.97
2745 3569 4.331717 GGCATTTAGTTTAGAACGCTGCTA 59.668 41.667 0.00 0.00 36.23 3.49
2746 3570 3.127030 GGCATTTAGTTTAGAACGCTGCT 59.873 43.478 0.00 0.00 36.23 4.24
2747 3571 3.119990 TGGCATTTAGTTTAGAACGCTGC 60.120 43.478 0.00 0.00 36.23 5.25
2748 3572 4.678509 TGGCATTTAGTTTAGAACGCTG 57.321 40.909 0.00 0.00 36.23 5.18
2749 3573 7.417612 CAATATGGCATTTAGTTTAGAACGCT 58.582 34.615 4.78 0.00 36.23 5.07
2750 3574 6.142320 GCAATATGGCATTTAGTTTAGAACGC 59.858 38.462 4.78 0.00 36.23 4.84
2751 3575 6.356977 CGCAATATGGCATTTAGTTTAGAACG 59.643 38.462 4.78 0.00 36.23 3.95
2752 3576 7.193595 ACGCAATATGGCATTTAGTTTAGAAC 58.806 34.615 4.78 0.00 0.00 3.01
2753 3577 7.328277 ACGCAATATGGCATTTAGTTTAGAA 57.672 32.000 4.78 0.00 0.00 2.10
2754 3578 6.935741 ACGCAATATGGCATTTAGTTTAGA 57.064 33.333 4.78 0.00 0.00 2.10
2757 3581 8.846211 AGTATAACGCAATATGGCATTTAGTTT 58.154 29.630 4.78 0.00 0.00 2.66
2758 3582 8.391075 AGTATAACGCAATATGGCATTTAGTT 57.609 30.769 4.78 8.30 0.00 2.24
2790 3614 4.139038 GGGTTATATAACACGGCATTGGT 58.861 43.478 23.59 0.00 37.92 3.67
2809 3633 0.618458 AAGGTCATGTATGCACGGGT 59.382 50.000 0.00 0.00 0.00 5.28
2842 3666 9.990868 AGTTTAATGGGGATGAACTATTTAAGT 57.009 29.630 0.00 0.00 41.49 2.24
2852 3676 9.189156 CAAGAGAATTAGTTTAATGGGGATGAA 57.811 33.333 0.00 0.00 0.00 2.57
2862 3686 6.403200 GCCGCATGTCAAGAGAATTAGTTTAA 60.403 38.462 0.00 0.00 0.00 1.52
2866 3690 2.939103 GCCGCATGTCAAGAGAATTAGT 59.061 45.455 0.00 0.00 0.00 2.24
2885 3709 0.593128 GCCGTTGATGTGGATATGCC 59.407 55.000 0.00 0.00 37.10 4.40
2887 3711 1.238439 GGGCCGTTGATGTGGATATG 58.762 55.000 0.00 0.00 0.00 1.78
2888 3712 0.110486 GGGGCCGTTGATGTGGATAT 59.890 55.000 0.00 0.00 0.00 1.63
2890 3714 2.275418 GGGGCCGTTGATGTGGAT 59.725 61.111 0.00 0.00 0.00 3.41
2900 3724 2.040606 ATGAGGTAGTGGGGCCGT 59.959 61.111 0.00 0.00 0.00 5.68
2949 3779 5.468746 CGTGAAGAGTTGTGGAGGAAAATTA 59.531 40.000 0.00 0.00 0.00 1.40
2961 3791 2.479566 ATGATGCCGTGAAGAGTTGT 57.520 45.000 0.00 0.00 0.00 3.32
2977 3820 9.672673 AAGGATTCTCGAGAAAAATAAGAATGA 57.327 29.630 30.18 4.47 36.94 2.57
2985 3828 5.067023 GCCATCAAGGATTCTCGAGAAAAAT 59.933 40.000 30.18 15.43 41.22 1.82
2989 3832 2.501316 TGCCATCAAGGATTCTCGAGAA 59.499 45.455 28.85 28.85 41.22 2.87
2990 3833 2.110578 TGCCATCAAGGATTCTCGAGA 58.889 47.619 12.08 12.08 41.22 4.04
2993 3836 1.328680 CGTTGCCATCAAGGATTCTCG 59.671 52.381 0.00 0.00 39.67 4.04
3009 3852 2.162408 GGAGGAAAATCAAGAGGCGTTG 59.838 50.000 0.00 0.00 0.00 4.10
3032 3875 4.702131 TGGAGATAAAAGAAGGCAAAGAGC 59.298 41.667 0.00 0.00 44.65 4.09
3048 3891 5.791336 AGTAGTGCGATTTGATGGAGATA 57.209 39.130 0.00 0.00 0.00 1.98
3069 3912 1.289530 ACAGGGGAGGAGAAGAGGTAG 59.710 57.143 0.00 0.00 0.00 3.18
3070 3913 1.007238 CACAGGGGAGGAGAAGAGGTA 59.993 57.143 0.00 0.00 0.00 3.08
3071 3914 0.252467 CACAGGGGAGGAGAAGAGGT 60.252 60.000 0.00 0.00 0.00 3.85
3072 3915 0.980231 CCACAGGGGAGGAGAAGAGG 60.980 65.000 0.00 0.00 40.01 3.69
3086 3929 0.953960 GCGTTGGTTACCCTCCACAG 60.954 60.000 0.00 0.00 34.45 3.66
3087 3930 1.071814 GCGTTGGTTACCCTCCACA 59.928 57.895 0.00 0.00 34.45 4.17
3250 4107 0.975556 TCACCGCTATTGCTGGAGGA 60.976 55.000 14.45 9.57 36.92 3.71
3260 4117 3.031736 AGGATGTGTTAGTCACCGCTAT 58.968 45.455 0.00 0.00 45.61 2.97
3272 4129 2.240667 CAATGGAGGAGGAGGATGTGTT 59.759 50.000 0.00 0.00 0.00 3.32
3273 4130 1.842562 CAATGGAGGAGGAGGATGTGT 59.157 52.381 0.00 0.00 0.00 3.72
3278 4135 0.399091 ATCGCAATGGAGGAGGAGGA 60.399 55.000 0.00 0.00 0.00 3.71
3299 4156 2.185310 TTTGAGGGAGGAAGCGAGGC 62.185 60.000 0.00 0.00 0.00 4.70
3312 4169 1.336887 ACGGTCACGATGACTTTGAGG 60.337 52.381 14.77 4.44 46.19 3.86
3327 4184 0.389757 GATGGCTTAGGGAGACGGTC 59.610 60.000 0.00 0.00 35.50 4.79
3331 4188 0.676736 CCTCGATGGCTTAGGGAGAC 59.323 60.000 0.00 0.00 0.00 3.36
3352 4209 1.077357 TCTGTTGTTGGTGCCGGTT 60.077 52.632 1.90 0.00 0.00 4.44
3401 4261 3.188786 GGCGATGCTCGTGTGGAC 61.189 66.667 7.27 0.00 42.81 4.02
3402 4262 4.794439 CGGCGATGCTCGTGTGGA 62.794 66.667 0.00 0.00 42.81 4.02
3459 4340 2.172293 AGTAGTAGGTCGTCCTAGTGGG 59.828 54.545 21.83 0.00 46.17 4.61
3492 4373 3.357079 CCAGTTGTCAGCGGGTGC 61.357 66.667 1.51 0.00 43.24 5.01
3493 4374 3.357079 GCCAGTTGTCAGCGGGTG 61.357 66.667 7.63 0.00 0.00 4.61
3494 4375 4.643387 GGCCAGTTGTCAGCGGGT 62.643 66.667 7.63 0.00 0.00 5.28
3530 4425 3.808618 GCTCTTCTTGGTGGTGTTGATCT 60.809 47.826 0.00 0.00 0.00 2.75
3571 4466 1.264557 CGTGGAGTCATAGGAGTAGCG 59.735 57.143 0.00 0.00 0.00 4.26
3574 4469 2.744166 CGTCCGTGGAGTCATAGGAGTA 60.744 54.545 0.00 0.00 34.74 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.