Multiple sequence alignment - TraesCS2B01G315800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G315800 chr2B 100.000 7111 0 0 1 7111 451263898 451271008 0.000000e+00 13132.0
1 TraesCS2B01G315800 chr2B 94.494 781 40 2 4 781 650566928 650567708 0.000000e+00 1201.0
2 TraesCS2B01G315800 chr2B 87.975 632 55 6 5657 6272 410276809 410277435 0.000000e+00 726.0
3 TraesCS2B01G315800 chr2B 91.543 473 39 1 779 1251 487736404 487736875 0.000000e+00 651.0
4 TraesCS2B01G315800 chr2B 84.255 470 49 14 2439 2883 290333472 290333941 1.100000e-117 435.0
5 TraesCS2B01G315800 chr2B 81.081 407 43 16 1479 1871 290332770 290333156 1.940000e-75 294.0
6 TraesCS2B01G315800 chr2B 80.344 407 46 18 1479 1871 333463014 333462628 1.950000e-70 278.0
7 TraesCS2B01G315800 chr2B 100.000 36 0 0 1620 1655 38372024 38371989 4.600000e-07 67.6
8 TraesCS2B01G315800 chr7B 96.366 5807 147 27 772 6541 480429029 480434808 0.000000e+00 9496.0
9 TraesCS2B01G315800 chr7B 94.529 786 38 3 1 781 710910211 710909426 0.000000e+00 1208.0
10 TraesCS2B01G315800 chr7B 94.730 778 38 2 7 781 526977755 526976978 0.000000e+00 1206.0
11 TraesCS2B01G315800 chr7B 86.739 920 91 17 5376 6272 191209974 191209063 0.000000e+00 994.0
12 TraesCS2B01G315800 chr7B 97.041 338 9 1 6773 7110 470727447 470727111 1.040000e-157 568.0
13 TraesCS2B01G315800 chr7B 96.498 257 9 0 6511 6767 480434806 480435062 6.590000e-115 425.0
14 TraesCS2B01G315800 chr7B 83.030 495 43 19 5350 5829 530666560 530667028 1.850000e-110 411.0
15 TraesCS2B01G315800 chr7B 92.073 164 13 0 6604 6767 191208661 191208498 1.540000e-56 231.0
16 TraesCS2B01G315800 chr7B 88.953 172 17 2 6599 6769 530667792 530667962 2.010000e-50 211.0
17 TraesCS2B01G315800 chr5A 96.588 5071 164 5 1699 6767 425056548 425051485 0.000000e+00 8397.0
18 TraesCS2B01G315800 chr5A 88.548 489 38 7 778 1249 425060728 425060241 1.720000e-160 577.0
19 TraesCS2B01G315800 chr5A 95.679 324 12 1 1384 1707 425060109 425059788 2.940000e-143 520.0
20 TraesCS2B01G315800 chr5A 81.928 332 41 10 2782 3099 404992417 404992743 5.470000e-66 263.0
21 TraesCS2B01G315800 chr3A 96.660 3503 108 5 2539 6036 446325910 446322412 0.000000e+00 5812.0
22 TraesCS2B01G315800 chr3A 95.331 664 27 4 6117 6779 446322416 446321756 0.000000e+00 1051.0
23 TraesCS2B01G315800 chr3A 89.916 357 34 2 779 1133 446326267 446325911 6.500000e-125 459.0
24 TraesCS2B01G315800 chr3A 90.303 165 14 2 6623 6787 282160218 282160380 1.550000e-51 215.0
25 TraesCS2B01G315800 chr1B 93.728 2280 116 10 1724 3989 453034502 453032236 0.000000e+00 3393.0
26 TraesCS2B01G315800 chr1B 91.515 2310 143 17 4485 6746 453031810 453029506 0.000000e+00 3131.0
27 TraesCS2B01G315800 chr1B 90.875 526 45 3 4475 4999 72969945 72970468 0.000000e+00 702.0
28 TraesCS2B01G315800 chr1B 90.684 526 46 3 4475 4999 73000481 73001004 0.000000e+00 697.0
29 TraesCS2B01G315800 chr1B 90.304 526 48 3 4475 4999 72982041 72982564 0.000000e+00 686.0
30 TraesCS2B01G315800 chr1B 90.304 526 48 3 4475 4999 72994148 72994671 0.000000e+00 686.0
31 TraesCS2B01G315800 chr1B 89.924 526 50 3 4475 4999 73015946 73016469 0.000000e+00 675.0
32 TraesCS2B01G315800 chr1B 96.512 344 11 1 6767 7110 520860293 520860635 1.040000e-157 568.0
33 TraesCS2B01G315800 chr1B 83.402 482 42 15 2439 2883 496663737 496663257 5.130000e-111 412.0
34 TraesCS2B01G315800 chr1B 90.580 276 23 3 5014 5287 72994891 72995165 5.240000e-96 363.0
35 TraesCS2B01G315800 chr1B 89.493 276 26 3 5014 5287 73001224 73001498 5.280000e-91 346.0
36 TraesCS2B01G315800 chr1B 89.416 274 26 3 5016 5287 73016691 73016963 6.830000e-90 342.0
37 TraesCS2B01G315800 chr1B 79.762 420 41 17 1479 1871 496664494 496664092 1.520000e-66 265.0
38 TraesCS2B01G315800 chr1B 87.264 212 20 2 1811 2021 496664093 496663888 1.190000e-57 235.0
39 TraesCS2B01G315800 chr1B 91.411 163 11 3 6609 6768 163778113 163778275 3.340000e-53 220.0
40 TraesCS2B01G315800 chr1B 93.827 81 5 0 1552 1632 453034600 453034520 9.690000e-24 122.0
41 TraesCS2B01G315800 chr1B 96.154 52 2 0 3604 3655 453032572 453032521 1.270000e-12 86.1
42 TraesCS2B01G315800 chr5B 85.149 2121 241 42 2931 4999 463003836 463005934 0.000000e+00 2104.0
43 TraesCS2B01G315800 chr5B 91.850 454 36 1 778 1231 339620174 339620626 3.620000e-177 632.0
44 TraesCS2B01G315800 chr5B 97.059 340 9 1 6771 7110 511919825 511919487 8.000000e-159 571.0
45 TraesCS2B01G315800 chr5B 97.059 340 9 1 6771 7110 631423075 631422737 8.000000e-159 571.0
46 TraesCS2B01G315800 chr5B 96.532 346 8 3 6765 7110 204220008 204219667 2.880000e-158 569.0
47 TraesCS2B01G315800 chr5B 84.673 535 51 10 6265 6770 115860238 115859706 8.230000e-139 505.0
48 TraesCS2B01G315800 chr5B 85.513 497 49 11 5350 5829 115861164 115860674 1.380000e-136 497.0
49 TraesCS2B01G315800 chr5B 93.189 323 22 0 4946 5268 191165074 191164752 6.450000e-130 475.0
50 TraesCS2B01G315800 chr5B 83.368 481 44 13 2439 2883 386864132 386864612 5.130000e-111 412.0
51 TraesCS2B01G315800 chr5B 87.683 341 28 7 5014 5352 463006192 463006520 1.120000e-102 385.0
52 TraesCS2B01G315800 chr5B 88.189 254 27 3 5295 5548 191164752 191164502 4.170000e-77 300.0
53 TraesCS2B01G315800 chr5B 79.762 420 41 17 1479 1871 386863375 386863777 1.520000e-66 265.0
54 TraesCS2B01G315800 chr5B 87.736 212 19 2 1811 2021 386863776 386863981 2.560000e-59 241.0
55 TraesCS2B01G315800 chr5B 84.810 158 9 7 5566 5713 191164276 191164124 2.070000e-30 145.0
56 TraesCS2B01G315800 chr5D 85.949 2007 200 45 2931 4881 364245630 364247610 0.000000e+00 2069.0
57 TraesCS2B01G315800 chr5D 84.416 1694 193 35 3243 4880 351147 352825 0.000000e+00 1600.0
58 TraesCS2B01G315800 chr5D 86.699 1248 123 26 2962 4182 348002 349233 0.000000e+00 1345.0
59 TraesCS2B01G315800 chr5D 84.839 963 109 25 3243 4182 350192 351140 0.000000e+00 935.0
60 TraesCS2B01G315800 chr5D 84.615 962 110 23 3243 4182 349240 350185 0.000000e+00 922.0
61 TraesCS2B01G315800 chr5D 96.774 341 10 1 6771 7110 295684888 295684548 1.040000e-157 568.0
62 TraesCS2B01G315800 chr5D 92.082 341 24 2 5014 5352 353026 353365 1.790000e-130 477.0
63 TraesCS2B01G315800 chr5D 85.841 339 20 13 5014 5352 364247808 364248118 1.140000e-87 335.0
64 TraesCS2B01G315800 chr5D 87.826 115 12 2 2609 2722 65005615 65005728 4.480000e-27 134.0
65 TraesCS2B01G315800 chr5D 90.196 51 3 2 3605 3653 364246351 364246401 1.660000e-06 65.8
66 TraesCS2B01G315800 chr7A 85.501 2007 219 45 2936 4890 99586934 99584948 0.000000e+00 2028.0
67 TraesCS2B01G315800 chr6A 84.895 2006 206 45 2931 4881 162188479 162190442 0.000000e+00 1936.0
68 TraesCS2B01G315800 chr6A 84.211 323 47 4 1479 1799 383200690 383201010 1.930000e-80 311.0
69 TraesCS2B01G315800 chr6A 79.377 257 33 18 778 1025 230688684 230688439 5.710000e-36 163.0
70 TraesCS2B01G315800 chr4B 94.987 778 36 2 7 781 56942584 56941807 0.000000e+00 1218.0
71 TraesCS2B01G315800 chr4B 90.875 526 45 3 4475 4999 414709760 414709237 0.000000e+00 702.0
72 TraesCS2B01G315800 chr4B 84.306 497 55 10 5350 5829 242909976 242909486 1.400000e-126 464.0
73 TraesCS2B01G315800 chr4B 90.580 276 23 3 5014 5287 414709018 414708744 5.240000e-96 363.0
74 TraesCS2B01G315800 chr3B 94.859 778 37 2 7 781 505432272 505433049 0.000000e+00 1212.0
75 TraesCS2B01G315800 chr3B 89.409 982 75 8 5295 6263 618465671 618464706 0.000000e+00 1210.0
76 TraesCS2B01G315800 chr3B 94.737 779 37 3 7 781 584137554 584136776 0.000000e+00 1208.0
77 TraesCS2B01G315800 chr3B 93.784 740 41 5 4530 5268 618466406 618465671 0.000000e+00 1107.0
78 TraesCS2B01G315800 chr3B 94.985 658 28 2 4175 4832 158635285 158634633 0.000000e+00 1027.0
79 TraesCS2B01G315800 chr3B 91.702 711 46 4 4299 4998 414809731 414810439 0.000000e+00 974.0
80 TraesCS2B01G315800 chr3B 92.355 484 34 3 769 1251 631925512 631925031 0.000000e+00 686.0
81 TraesCS2B01G315800 chr3B 92.178 473 36 1 779 1251 631818430 631817959 0.000000e+00 667.0
82 TraesCS2B01G315800 chr3B 96.522 345 10 2 6767 7110 654464703 654464360 2.880000e-158 569.0
83 TraesCS2B01G315800 chr3B 91.775 231 18 1 6268 6497 618464670 618464440 3.200000e-83 320.0
84 TraesCS2B01G315800 chrUn 94.730 778 38 2 7 781 40483265 40482488 0.000000e+00 1206.0
85 TraesCS2B01G315800 chrUn 94.730 778 38 2 7 781 353640210 353639433 0.000000e+00 1206.0
86 TraesCS2B01G315800 chrUn 92.857 84 4 2 6519 6600 371710532 371710449 3.480000e-23 121.0
87 TraesCS2B01G315800 chr6B 94.602 778 39 2 7 781 644120050 644119273 0.000000e+00 1201.0
88 TraesCS2B01G315800 chr6B 86.857 913 89 17 5376 6265 480266158 480267062 0.000000e+00 992.0
89 TraesCS2B01G315800 chr6B 97.337 338 8 1 6773 7110 225236730 225237066 2.230000e-159 573.0
90 TraesCS2B01G315800 chr6B 97.041 338 9 1 6773 7110 233760430 233760766 1.040000e-157 568.0
91 TraesCS2B01G315800 chr6B 89.855 276 25 3 5014 5287 22890419 22890693 1.130000e-92 351.0
92 TraesCS2B01G315800 chr6B 85.546 339 34 9 6265 6598 480267096 480267424 2.460000e-89 340.0
93 TraesCS2B01G315800 chr6B 100.000 38 0 0 1618 1655 349462558 349462521 3.560000e-08 71.3
94 TraesCS2B01G315800 chr6D 92.252 413 26 5 5854 6265 425060242 425060649 1.330000e-161 580.0
95 TraesCS2B01G315800 chr6D 88.988 336 35 2 6265 6598 425060683 425061018 1.430000e-111 414.0
96 TraesCS2B01G315800 chr6D 94.675 169 9 0 6599 6767 425061059 425061227 5.470000e-66 263.0
97 TraesCS2B01G315800 chr1D 86.410 493 47 12 5350 5829 93832091 93832576 8.170000e-144 521.0
98 TraesCS2B01G315800 chr1D 90.909 374 32 2 5891 6262 93832601 93832974 1.060000e-137 501.0
99 TraesCS2B01G315800 chr2A 90.746 335 24 5 6269 6598 347871987 347872319 2.350000e-119 440.0
100 TraesCS2B01G315800 chr2A 91.228 228 17 2 2935 3160 744805400 744805174 2.490000e-79 307.0
101 TraesCS2B01G315800 chr2A 92.308 169 13 0 6599 6767 347872359 347872527 2.560000e-59 241.0
102 TraesCS2B01G315800 chr2A 84.314 204 28 1 2028 2231 21184450 21184649 5.630000e-46 196.0
103 TraesCS2B01G315800 chr2A 100.000 38 0 0 1618 1655 178473825 178473788 3.560000e-08 71.3
104 TraesCS2B01G315800 chr4A 82.008 239 27 13 779 1009 253706655 253706885 9.420000e-44 189.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G315800 chr2B 451263898 451271008 7110 False 13132.000000 13132 100.000000 1 7111 1 chr2B.!!$F2 7110
1 TraesCS2B01G315800 chr2B 650566928 650567708 780 False 1201.000000 1201 94.494000 4 781 1 chr2B.!!$F4 777
2 TraesCS2B01G315800 chr2B 410276809 410277435 626 False 726.000000 726 87.975000 5657 6272 1 chr2B.!!$F1 615
3 TraesCS2B01G315800 chr2B 290332770 290333941 1171 False 364.500000 435 82.668000 1479 2883 2 chr2B.!!$F5 1404
4 TraesCS2B01G315800 chr7B 480429029 480435062 6033 False 4960.500000 9496 96.432000 772 6767 2 chr7B.!!$F1 5995
5 TraesCS2B01G315800 chr7B 710909426 710910211 785 True 1208.000000 1208 94.529000 1 781 1 chr7B.!!$R3 780
6 TraesCS2B01G315800 chr7B 526976978 526977755 777 True 1206.000000 1206 94.730000 7 781 1 chr7B.!!$R2 774
7 TraesCS2B01G315800 chr7B 191208498 191209974 1476 True 612.500000 994 89.406000 5376 6767 2 chr7B.!!$R4 1391
8 TraesCS2B01G315800 chr7B 530666560 530667962 1402 False 311.000000 411 85.991500 5350 6769 2 chr7B.!!$F2 1419
9 TraesCS2B01G315800 chr5A 425051485 425060728 9243 True 3164.666667 8397 93.605000 778 6767 3 chr5A.!!$R1 5989
10 TraesCS2B01G315800 chr3A 446321756 446326267 4511 True 2440.666667 5812 93.969000 779 6779 3 chr3A.!!$R1 6000
11 TraesCS2B01G315800 chr1B 453029506 453034600 5094 True 1683.025000 3393 93.806000 1552 6746 4 chr1B.!!$R1 5194
12 TraesCS2B01G315800 chr1B 72969945 72970468 523 False 702.000000 702 90.875000 4475 4999 1 chr1B.!!$F1 524
13 TraesCS2B01G315800 chr1B 72982041 72982564 523 False 686.000000 686 90.304000 4475 4999 1 chr1B.!!$F2 524
14 TraesCS2B01G315800 chr1B 72994148 72995165 1017 False 524.500000 686 90.442000 4475 5287 2 chr1B.!!$F5 812
15 TraesCS2B01G315800 chr1B 73000481 73001498 1017 False 521.500000 697 90.088500 4475 5287 2 chr1B.!!$F6 812
16 TraesCS2B01G315800 chr1B 73015946 73016963 1017 False 508.500000 675 89.670000 4475 5287 2 chr1B.!!$F7 812
17 TraesCS2B01G315800 chr1B 496663257 496664494 1237 True 304.000000 412 83.476000 1479 2883 3 chr1B.!!$R2 1404
18 TraesCS2B01G315800 chr5B 463003836 463006520 2684 False 1244.500000 2104 86.416000 2931 5352 2 chr5B.!!$F3 2421
19 TraesCS2B01G315800 chr5B 115859706 115861164 1458 True 501.000000 505 85.093000 5350 6770 2 chr5B.!!$R4 1420
20 TraesCS2B01G315800 chr5B 191164124 191165074 950 True 306.666667 475 88.729333 4946 5713 3 chr5B.!!$R5 767
21 TraesCS2B01G315800 chr5B 386863375 386864612 1237 False 306.000000 412 83.622000 1479 2883 3 chr5B.!!$F2 1404
22 TraesCS2B01G315800 chr5D 348002 353365 5363 False 1055.800000 1600 86.530200 2962 5352 5 chr5D.!!$F2 2390
23 TraesCS2B01G315800 chr5D 364245630 364248118 2488 False 823.266667 2069 87.328667 2931 5352 3 chr5D.!!$F3 2421
24 TraesCS2B01G315800 chr7A 99584948 99586934 1986 True 2028.000000 2028 85.501000 2936 4890 1 chr7A.!!$R1 1954
25 TraesCS2B01G315800 chr6A 162188479 162190442 1963 False 1936.000000 1936 84.895000 2931 4881 1 chr6A.!!$F1 1950
26 TraesCS2B01G315800 chr4B 56941807 56942584 777 True 1218.000000 1218 94.987000 7 781 1 chr4B.!!$R1 774
27 TraesCS2B01G315800 chr4B 414708744 414709760 1016 True 532.500000 702 90.727500 4475 5287 2 chr4B.!!$R3 812
28 TraesCS2B01G315800 chr3B 505432272 505433049 777 False 1212.000000 1212 94.859000 7 781 1 chr3B.!!$F2 774
29 TraesCS2B01G315800 chr3B 584136776 584137554 778 True 1208.000000 1208 94.737000 7 781 1 chr3B.!!$R2 774
30 TraesCS2B01G315800 chr3B 158634633 158635285 652 True 1027.000000 1027 94.985000 4175 4832 1 chr3B.!!$R1 657
31 TraesCS2B01G315800 chr3B 414809731 414810439 708 False 974.000000 974 91.702000 4299 4998 1 chr3B.!!$F1 699
32 TraesCS2B01G315800 chr3B 618464440 618466406 1966 True 879.000000 1210 91.656000 4530 6497 3 chr3B.!!$R6 1967
33 TraesCS2B01G315800 chrUn 40482488 40483265 777 True 1206.000000 1206 94.730000 7 781 1 chrUn.!!$R1 774
34 TraesCS2B01G315800 chrUn 353639433 353640210 777 True 1206.000000 1206 94.730000 7 781 1 chrUn.!!$R2 774
35 TraesCS2B01G315800 chr6B 644119273 644120050 777 True 1201.000000 1201 94.602000 7 781 1 chr6B.!!$R2 774
36 TraesCS2B01G315800 chr6B 480266158 480267424 1266 False 666.000000 992 86.201500 5376 6598 2 chr6B.!!$F4 1222
37 TraesCS2B01G315800 chr6D 425060242 425061227 985 False 419.000000 580 91.971667 5854 6767 3 chr6D.!!$F1 913
38 TraesCS2B01G315800 chr1D 93832091 93832974 883 False 511.000000 521 88.659500 5350 6262 2 chr1D.!!$F1 912
39 TraesCS2B01G315800 chr2A 347871987 347872527 540 False 340.500000 440 91.527000 6269 6767 2 chr2A.!!$F2 498

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
947 955 0.033796 ATCCAATGACTGGTGGGCTG 60.034 55.000 0.00 0.0 46.51 4.85 F
954 962 0.835941 GACTGGTGGGCTGATCTCAT 59.164 55.000 0.00 0.0 0.00 2.90 F
1334 1391 1.613630 AACCTCTCGGATGGGTGCT 60.614 57.895 3.38 0.0 33.20 4.40 F
2351 5766 2.178912 TGTGGTTTTGATCGTCTCCC 57.821 50.000 0.00 0.0 0.00 4.30 F
3798 10232 1.401761 TTGTTGCTGGTCTGTTGCAT 58.598 45.000 0.00 0.0 36.55 3.96 F
3829 10263 1.440618 TTGGTGGGCTACTTCCTTCA 58.559 50.000 0.00 0.0 0.00 3.02 F
3884 10318 2.399396 TCTTGCGTGCAACTTTTAGC 57.601 45.000 2.58 0.0 31.75 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2556 6038 0.988145 TGGATCATGGGACCTGGGAC 60.988 60.000 0.00 0.0 0.00 4.46 R
2822 6327 2.955660 TCCAATTTCCACACACTTGTCC 59.044 45.455 0.00 0.0 31.66 4.02 R
3397 8822 5.573380 TGAGCATCTAATTAAGGGAGCAT 57.427 39.130 0.00 0.0 34.92 3.79 R
3858 10292 0.725784 GTTGCACGCAAGATGAACCG 60.726 55.000 4.35 0.0 43.62 4.44 R
5503 12462 6.317140 CCAGAACATGTAGTACAAAGCATCAT 59.683 38.462 7.16 0.0 0.00 2.45 R
5992 13189 5.466728 CAGCAGCACTTTACAGAAAGAAGTA 59.533 40.000 4.50 0.0 44.23 2.24 R
6673 13993 9.917129 TCATTTTGCATGGACATATTCAATATC 57.083 29.630 0.00 0.0 0.00 1.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 64 6.825721 CCTTAGGTGTTTCTTCTGCTCAATAT 59.174 38.462 0.00 0.00 0.00 1.28
155 159 0.700564 TGCTCCTTTTCCAGCCAGAT 59.299 50.000 0.00 0.00 34.47 2.90
159 163 3.694926 CTCCTTTTCCAGCCAGATTTCT 58.305 45.455 0.00 0.00 0.00 2.52
310 314 2.176247 GAGGTATCAACTCCCCCAGA 57.824 55.000 0.00 0.00 0.00 3.86
330 334 2.231721 GACTTAGACCTCGCTTGTCCTT 59.768 50.000 0.00 0.00 33.09 3.36
501 508 8.795513 ACAATCAATTCACAATGTCAAGTATGA 58.204 29.630 0.00 0.00 0.00 2.15
513 520 9.903682 CAATGTCAAGTATGATTCAGAAACTTT 57.096 29.630 8.38 0.00 38.01 2.66
739 746 4.081309 CCTCCCAACGTATTCACCTTTAGA 60.081 45.833 0.00 0.00 0.00 2.10
913 921 7.754851 ACTTGGTAATATCGTTTTTCACCTT 57.245 32.000 0.00 0.00 0.00 3.50
947 955 0.033796 ATCCAATGACTGGTGGGCTG 60.034 55.000 0.00 0.00 46.51 4.85
954 962 0.835941 GACTGGTGGGCTGATCTCAT 59.164 55.000 0.00 0.00 0.00 2.90
964 972 4.139786 GGGCTGATCTCATGCTTTCATTA 58.860 43.478 0.00 0.00 0.00 1.90
1124 1134 2.685380 CTCCTTCCCTCCCGCTGT 60.685 66.667 0.00 0.00 0.00 4.40
1135 1145 3.710722 CCGCTGTGCCCTCTCCTT 61.711 66.667 0.00 0.00 0.00 3.36
1182 1192 3.775654 CCGAGCTCCGCCTTCCTT 61.776 66.667 8.47 0.00 36.84 3.36
1262 1319 4.988598 CCGCTTCACCACAGCCGT 62.989 66.667 0.00 0.00 33.29 5.68
1334 1391 1.613630 AACCTCTCGGATGGGTGCT 60.614 57.895 3.38 0.00 33.20 4.40
1350 1407 2.494918 CTGGGTAGAAGGTCGCGG 59.505 66.667 6.13 0.00 0.00 6.46
1731 5078 9.646522 AACTGCTCTGTTTATATATTTTGGGAT 57.353 29.630 0.00 0.00 0.00 3.85
1738 5085 7.881142 TGTTTATATATTTTGGGATTGCTCGG 58.119 34.615 0.00 0.00 0.00 4.63
1852 5206 3.623060 CAGATGCGTGCAAGTTTACCTAT 59.377 43.478 0.00 0.00 0.00 2.57
1932 5347 6.195600 AGTTACAACCTTTTCCTGGTATCA 57.804 37.500 0.00 0.00 36.69 2.15
2065 5480 4.588951 TCTCCATCTGCTAATACATCGGTT 59.411 41.667 0.00 0.00 0.00 4.44
2066 5481 5.070446 TCTCCATCTGCTAATACATCGGTTT 59.930 40.000 0.00 0.00 0.00 3.27
2067 5482 5.680619 TCCATCTGCTAATACATCGGTTTT 58.319 37.500 0.00 0.00 0.00 2.43
2068 5483 6.822442 TCCATCTGCTAATACATCGGTTTTA 58.178 36.000 0.00 0.00 0.00 1.52
2069 5484 7.450074 TCCATCTGCTAATACATCGGTTTTAT 58.550 34.615 0.00 0.00 0.00 1.40
2121 5536 5.304101 TCTGCAGTGGGTTAATCAAACAATT 59.696 36.000 14.67 0.00 40.08 2.32
2123 5538 5.757320 TGCAGTGGGTTAATCAAACAATTTG 59.243 36.000 0.00 0.00 40.08 2.32
2182 5597 7.241042 ACTAAATCTGCAAGGTGTTCTACTA 57.759 36.000 0.00 0.00 0.00 1.82
2351 5766 2.178912 TGTGGTTTTGATCGTCTCCC 57.821 50.000 0.00 0.00 0.00 4.30
2948 6453 9.625747 ATTGTTTAAATGGTTTTGAATGAGGTT 57.374 25.926 0.00 0.00 0.00 3.50
3370 6886 5.296035 GCATTTACCTGAAGGCGTTAATAGT 59.704 40.000 0.00 0.00 39.32 2.12
3557 8986 2.391678 TGGAGCTACAGATGCATCTCA 58.608 47.619 26.44 16.06 34.22 3.27
3798 10232 1.401761 TTGTTGCTGGTCTGTTGCAT 58.598 45.000 0.00 0.00 36.55 3.96
3827 10261 1.497286 TGTTTGGTGGGCTACTTCCTT 59.503 47.619 0.00 0.00 0.00 3.36
3829 10263 1.440618 TTGGTGGGCTACTTCCTTCA 58.559 50.000 0.00 0.00 0.00 3.02
3858 10292 4.037923 TGGTTGAAGAATTTTCAGAGGCAC 59.962 41.667 0.00 0.00 0.00 5.01
3884 10318 2.399396 TCTTGCGTGCAACTTTTAGC 57.601 45.000 2.58 0.00 31.75 3.09
5503 12462 6.570957 CGTGTCAGGGTAGTACTATGTCAAAA 60.571 42.308 5.75 0.00 0.00 2.44
5585 12752 3.872771 CCTTTGCTTTGTTTGTTCATGCT 59.127 39.130 0.00 0.00 0.00 3.79
5821 13009 3.579709 AGCCGCTGTAAGATCGATAATG 58.420 45.455 0.00 0.00 34.07 1.90
5992 13189 6.881065 TCTGATCTTTTCGTGAATCCTTTCAT 59.119 34.615 0.00 0.00 43.49 2.57
6318 13563 7.677454 TGCATGCTGAAGTATATATTTCCAG 57.323 36.000 20.33 11.79 0.00 3.86
6521 13798 2.435059 GGGCTCTGCGTGGAGTTC 60.435 66.667 8.17 2.78 35.89 3.01
6673 13993 4.111375 ACACATGAGCTTTCTACTACCG 57.889 45.455 0.00 0.00 0.00 4.02
6770 14090 1.541670 GCAACGGGTCAACTAGTTGGA 60.542 52.381 30.35 17.03 42.80 3.53
6771 14091 2.874457 GCAACGGGTCAACTAGTTGGAT 60.874 50.000 30.35 10.43 42.80 3.41
6772 14092 3.618019 GCAACGGGTCAACTAGTTGGATA 60.618 47.826 30.35 12.82 42.80 2.59
6773 14093 4.766375 CAACGGGTCAACTAGTTGGATAT 58.234 43.478 30.35 13.35 39.95 1.63
6774 14094 5.682990 GCAACGGGTCAACTAGTTGGATATA 60.683 44.000 30.35 12.12 42.80 0.86
6775 14095 6.522054 CAACGGGTCAACTAGTTGGATATAT 58.478 40.000 30.35 13.86 39.95 0.86
6776 14096 7.663827 CAACGGGTCAACTAGTTGGATATATA 58.336 38.462 30.35 10.75 39.95 0.86
6777 14097 8.311836 CAACGGGTCAACTAGTTGGATATATAT 58.688 37.037 30.35 11.43 39.95 0.86
6778 14098 9.537852 AACGGGTCAACTAGTTGGATATATATA 57.462 33.333 30.35 9.39 40.78 0.86
6779 14099 9.710818 ACGGGTCAACTAGTTGGATATATATAT 57.289 33.333 30.35 4.86 40.78 0.86
6802 14122 5.808042 ATCATGATCTTTCAAACACGAGG 57.192 39.130 1.18 0.00 34.96 4.63
6803 14123 4.893608 TCATGATCTTTCAAACACGAGGA 58.106 39.130 0.00 0.00 34.96 3.71
6804 14124 4.931601 TCATGATCTTTCAAACACGAGGAG 59.068 41.667 0.00 0.00 34.96 3.69
6805 14125 3.067106 TGATCTTTCAAACACGAGGAGC 58.933 45.455 0.00 0.00 0.00 4.70
6806 14126 2.910688 TCTTTCAAACACGAGGAGCT 57.089 45.000 0.00 0.00 0.00 4.09
6807 14127 3.194005 TCTTTCAAACACGAGGAGCTT 57.806 42.857 0.00 0.00 0.00 3.74
6808 14128 2.872245 TCTTTCAAACACGAGGAGCTTG 59.128 45.455 0.00 0.00 0.00 4.01
6809 14129 0.944386 TTCAAACACGAGGAGCTTGC 59.056 50.000 0.00 0.00 0.00 4.01
6810 14130 0.179059 TCAAACACGAGGAGCTTGCA 60.179 50.000 0.00 0.00 0.00 4.08
6811 14131 0.662619 CAAACACGAGGAGCTTGCAA 59.337 50.000 0.00 0.00 0.00 4.08
6812 14132 1.065401 CAAACACGAGGAGCTTGCAAA 59.935 47.619 0.00 0.00 0.00 3.68
6813 14133 1.388547 AACACGAGGAGCTTGCAAAA 58.611 45.000 0.00 0.00 0.00 2.44
6814 14134 0.947244 ACACGAGGAGCTTGCAAAAG 59.053 50.000 0.00 0.00 0.00 2.27
6815 14135 0.239347 CACGAGGAGCTTGCAAAAGG 59.761 55.000 0.00 0.00 0.00 3.11
6816 14136 0.108585 ACGAGGAGCTTGCAAAAGGA 59.891 50.000 0.00 0.00 0.00 3.36
6817 14137 1.271597 ACGAGGAGCTTGCAAAAGGAT 60.272 47.619 0.00 0.00 0.00 3.24
6818 14138 2.027192 ACGAGGAGCTTGCAAAAGGATA 60.027 45.455 0.00 0.00 0.00 2.59
6819 14139 3.009723 CGAGGAGCTTGCAAAAGGATAA 58.990 45.455 0.00 0.00 0.00 1.75
6820 14140 3.440173 CGAGGAGCTTGCAAAAGGATAAA 59.560 43.478 0.00 0.00 0.00 1.40
6821 14141 4.082787 CGAGGAGCTTGCAAAAGGATAAAA 60.083 41.667 0.00 0.00 0.00 1.52
6822 14142 5.393461 CGAGGAGCTTGCAAAAGGATAAAAT 60.393 40.000 0.00 0.00 0.00 1.82
6823 14143 5.727434 AGGAGCTTGCAAAAGGATAAAATG 58.273 37.500 0.00 0.00 0.00 2.32
6824 14144 5.481473 AGGAGCTTGCAAAAGGATAAAATGA 59.519 36.000 0.00 0.00 0.00 2.57
6825 14145 6.014327 AGGAGCTTGCAAAAGGATAAAATGAA 60.014 34.615 0.00 0.00 0.00 2.57
6826 14146 6.650390 GGAGCTTGCAAAAGGATAAAATGAAA 59.350 34.615 0.00 0.00 0.00 2.69
6827 14147 7.173047 GGAGCTTGCAAAAGGATAAAATGAAAA 59.827 33.333 0.00 0.00 0.00 2.29
6828 14148 8.449251 AGCTTGCAAAAGGATAAAATGAAAAA 57.551 26.923 0.00 0.00 0.00 1.94
6829 14149 8.562052 AGCTTGCAAAAGGATAAAATGAAAAAG 58.438 29.630 0.00 0.00 0.00 2.27
6830 14150 7.804600 GCTTGCAAAAGGATAAAATGAAAAAGG 59.195 33.333 0.00 0.00 0.00 3.11
6831 14151 7.742556 TGCAAAAGGATAAAATGAAAAAGGG 57.257 32.000 0.00 0.00 0.00 3.95
6832 14152 7.512992 TGCAAAAGGATAAAATGAAAAAGGGA 58.487 30.769 0.00 0.00 0.00 4.20
6833 14153 7.995488 TGCAAAAGGATAAAATGAAAAAGGGAA 59.005 29.630 0.00 0.00 0.00 3.97
6834 14154 8.845227 GCAAAAGGATAAAATGAAAAAGGGAAA 58.155 29.630 0.00 0.00 0.00 3.13
6836 14156 9.573166 AAAAGGATAAAATGAAAAAGGGAAAGG 57.427 29.630 0.00 0.00 0.00 3.11
6837 14157 7.872061 AGGATAAAATGAAAAAGGGAAAGGT 57.128 32.000 0.00 0.00 0.00 3.50
6838 14158 7.679783 AGGATAAAATGAAAAAGGGAAAGGTG 58.320 34.615 0.00 0.00 0.00 4.00
6839 14159 7.512402 AGGATAAAATGAAAAAGGGAAAGGTGA 59.488 33.333 0.00 0.00 0.00 4.02
6840 14160 8.154203 GGATAAAATGAAAAAGGGAAAGGTGAA 58.846 33.333 0.00 0.00 0.00 3.18
6841 14161 9.208022 GATAAAATGAAAAAGGGAAAGGTGAAG 57.792 33.333 0.00 0.00 0.00 3.02
6842 14162 6.806668 AAATGAAAAAGGGAAAGGTGAAGA 57.193 33.333 0.00 0.00 0.00 2.87
6843 14163 7.379059 AAATGAAAAAGGGAAAGGTGAAGAT 57.621 32.000 0.00 0.00 0.00 2.40
6844 14164 6.596309 ATGAAAAAGGGAAAGGTGAAGATC 57.404 37.500 0.00 0.00 0.00 2.75
6845 14165 5.454062 TGAAAAAGGGAAAGGTGAAGATCA 58.546 37.500 0.00 0.00 0.00 2.92
6846 14166 5.301805 TGAAAAAGGGAAAGGTGAAGATCAC 59.698 40.000 1.88 1.88 46.23 3.06
6858 14178 3.373439 GTGAAGATCACCATGACTCAAGC 59.627 47.826 0.00 0.00 41.37 4.01
6859 14179 3.008266 TGAAGATCACCATGACTCAAGCA 59.992 43.478 0.00 0.00 0.00 3.91
6860 14180 3.928005 AGATCACCATGACTCAAGCAT 57.072 42.857 0.00 0.00 0.00 3.79
6861 14181 5.104817 TGAAGATCACCATGACTCAAGCATA 60.105 40.000 0.00 0.00 0.00 3.14
6862 14182 5.363562 AGATCACCATGACTCAAGCATAA 57.636 39.130 0.00 0.00 0.00 1.90
6863 14183 5.748402 AGATCACCATGACTCAAGCATAAA 58.252 37.500 0.00 0.00 0.00 1.40
6864 14184 5.821470 AGATCACCATGACTCAAGCATAAAG 59.179 40.000 0.00 0.00 0.00 1.85
6865 14185 4.910195 TCACCATGACTCAAGCATAAAGT 58.090 39.130 0.00 0.00 0.00 2.66
6866 14186 6.048732 TCACCATGACTCAAGCATAAAGTA 57.951 37.500 0.00 0.00 0.00 2.24
6867 14187 6.472016 TCACCATGACTCAAGCATAAAGTAA 58.528 36.000 0.00 0.00 0.00 2.24
6868 14188 6.939730 TCACCATGACTCAAGCATAAAGTAAA 59.060 34.615 0.00 0.00 0.00 2.01
6869 14189 7.446931 TCACCATGACTCAAGCATAAAGTAAAA 59.553 33.333 0.00 0.00 0.00 1.52
6870 14190 8.081633 CACCATGACTCAAGCATAAAGTAAAAA 58.918 33.333 0.00 0.00 0.00 1.94
6897 14217 8.204160 ACATAAAATAAAAGATAGGCCCTTTGC 58.796 33.333 0.00 0.00 34.42 3.68
6898 14218 6.619329 AAAATAAAAGATAGGCCCTTTGCA 57.381 33.333 0.00 0.00 43.89 4.08
6899 14219 5.859205 AATAAAAGATAGGCCCTTTGCAG 57.141 39.130 0.00 0.00 43.89 4.41
6900 14220 3.456380 AAAAGATAGGCCCTTTGCAGA 57.544 42.857 0.00 0.00 43.89 4.26
6901 14221 2.725221 AAGATAGGCCCTTTGCAGAG 57.275 50.000 0.00 0.00 43.89 3.35
6902 14222 0.842635 AGATAGGCCCTTTGCAGAGG 59.157 55.000 16.42 16.42 43.89 3.69
6908 14228 4.828409 CCTTTGCAGAGGGAAGCA 57.172 55.556 15.60 0.00 39.32 3.91
6909 14229 2.564471 CCTTTGCAGAGGGAAGCAG 58.436 57.895 15.60 0.00 42.39 4.24
6910 14230 0.037303 CCTTTGCAGAGGGAAGCAGA 59.963 55.000 15.60 0.00 42.39 4.26
6911 14231 1.451067 CTTTGCAGAGGGAAGCAGAG 58.549 55.000 0.00 0.00 42.39 3.35
6912 14232 0.037303 TTTGCAGAGGGAAGCAGAGG 59.963 55.000 0.00 0.00 42.39 3.69
6913 14233 1.130054 TTGCAGAGGGAAGCAGAGGT 61.130 55.000 0.00 0.00 42.39 3.85
6914 14234 1.130054 TGCAGAGGGAAGCAGAGGTT 61.130 55.000 0.00 0.00 35.51 3.50
6915 14235 0.676151 GCAGAGGGAAGCAGAGGTTG 60.676 60.000 0.00 0.00 0.00 3.77
6916 14236 0.689623 CAGAGGGAAGCAGAGGTTGT 59.310 55.000 0.00 0.00 0.00 3.32
6917 14237 0.980423 AGAGGGAAGCAGAGGTTGTC 59.020 55.000 0.00 0.00 0.00 3.18
6918 14238 0.687354 GAGGGAAGCAGAGGTTGTCA 59.313 55.000 0.00 0.00 0.00 3.58
6919 14239 1.280421 GAGGGAAGCAGAGGTTGTCAT 59.720 52.381 0.00 0.00 0.00 3.06
6920 14240 1.004044 AGGGAAGCAGAGGTTGTCATG 59.996 52.381 0.00 0.00 0.00 3.07
6921 14241 1.271597 GGGAAGCAGAGGTTGTCATGT 60.272 52.381 0.00 0.00 0.00 3.21
6922 14242 1.808945 GGAAGCAGAGGTTGTCATGTG 59.191 52.381 0.00 0.00 0.00 3.21
6923 14243 1.198637 GAAGCAGAGGTTGTCATGTGC 59.801 52.381 0.00 0.00 43.28 4.57
6924 14244 0.399454 AGCAGAGGTTGTCATGTGCT 59.601 50.000 0.00 0.00 46.95 4.40
6925 14245 1.242076 GCAGAGGTTGTCATGTGCTT 58.758 50.000 0.00 0.00 40.56 3.91
6926 14246 1.610522 GCAGAGGTTGTCATGTGCTTT 59.389 47.619 0.00 0.00 40.56 3.51
6927 14247 2.035066 GCAGAGGTTGTCATGTGCTTTT 59.965 45.455 0.00 0.00 40.56 2.27
6928 14248 3.253188 GCAGAGGTTGTCATGTGCTTTTA 59.747 43.478 0.00 0.00 40.56 1.52
6929 14249 4.614535 GCAGAGGTTGTCATGTGCTTTTAG 60.615 45.833 0.00 0.00 40.56 1.85
6930 14250 4.074970 AGAGGTTGTCATGTGCTTTTAGG 58.925 43.478 0.00 0.00 0.00 2.69
6931 14251 3.157087 AGGTTGTCATGTGCTTTTAGGG 58.843 45.455 0.00 0.00 0.00 3.53
6932 14252 2.890945 GGTTGTCATGTGCTTTTAGGGT 59.109 45.455 0.00 0.00 0.00 4.34
6933 14253 3.320826 GGTTGTCATGTGCTTTTAGGGTT 59.679 43.478 0.00 0.00 0.00 4.11
6934 14254 4.298332 GTTGTCATGTGCTTTTAGGGTTG 58.702 43.478 0.00 0.00 0.00 3.77
6935 14255 2.890311 TGTCATGTGCTTTTAGGGTTGG 59.110 45.455 0.00 0.00 0.00 3.77
6936 14256 3.153919 GTCATGTGCTTTTAGGGTTGGA 58.846 45.455 0.00 0.00 0.00 3.53
6937 14257 3.763897 GTCATGTGCTTTTAGGGTTGGAT 59.236 43.478 0.00 0.00 0.00 3.41
6938 14258 3.763360 TCATGTGCTTTTAGGGTTGGATG 59.237 43.478 0.00 0.00 0.00 3.51
6939 14259 1.892474 TGTGCTTTTAGGGTTGGATGC 59.108 47.619 0.00 0.00 0.00 3.91
6940 14260 1.892474 GTGCTTTTAGGGTTGGATGCA 59.108 47.619 0.00 0.00 0.00 3.96
6941 14261 2.497273 GTGCTTTTAGGGTTGGATGCAT 59.503 45.455 0.00 0.00 0.00 3.96
6942 14262 3.699038 GTGCTTTTAGGGTTGGATGCATA 59.301 43.478 0.00 0.00 0.00 3.14
6943 14263 4.159506 GTGCTTTTAGGGTTGGATGCATAA 59.840 41.667 0.00 0.00 0.00 1.90
6944 14264 4.774726 TGCTTTTAGGGTTGGATGCATAAA 59.225 37.500 0.00 0.00 0.00 1.40
6945 14265 5.247110 TGCTTTTAGGGTTGGATGCATAAAA 59.753 36.000 0.00 0.00 0.00 1.52
6946 14266 6.070309 TGCTTTTAGGGTTGGATGCATAAAAT 60.070 34.615 0.00 0.00 0.00 1.82
6947 14267 6.479990 GCTTTTAGGGTTGGATGCATAAAATC 59.520 38.462 0.00 0.00 0.00 2.17
6948 14268 7.633553 GCTTTTAGGGTTGGATGCATAAAATCT 60.634 37.037 0.00 2.63 0.00 2.40
6949 14269 7.732222 TTTAGGGTTGGATGCATAAAATCTT 57.268 32.000 0.00 0.00 0.00 2.40
6950 14270 8.830915 TTTAGGGTTGGATGCATAAAATCTTA 57.169 30.769 0.00 0.00 0.00 2.10
6951 14271 8.830915 TTAGGGTTGGATGCATAAAATCTTAA 57.169 30.769 0.00 2.02 0.00 1.85
6952 14272 7.919385 AGGGTTGGATGCATAAAATCTTAAT 57.081 32.000 0.00 0.00 0.00 1.40
6953 14273 7.729116 AGGGTTGGATGCATAAAATCTTAATG 58.271 34.615 0.00 0.00 0.00 1.90
6954 14274 6.424812 GGGTTGGATGCATAAAATCTTAATGC 59.575 38.462 0.00 0.00 38.60 3.56
6963 14283 8.646356 TGCATAAAATCTTAATGCAAAAGAACG 58.354 29.630 16.19 5.67 44.07 3.95
6964 14284 8.647226 GCATAAAATCTTAATGCAAAAGAACGT 58.353 29.630 16.19 8.61 36.60 3.99
6966 14286 9.906660 ATAAAATCTTAATGCAAAAGAACGTCA 57.093 25.926 16.19 4.86 36.60 4.35
6967 14287 7.623268 AAATCTTAATGCAAAAGAACGTCAC 57.377 32.000 16.19 0.00 36.60 3.67
6968 14288 6.560253 ATCTTAATGCAAAAGAACGTCACT 57.440 33.333 16.19 0.00 36.60 3.41
6969 14289 6.371809 TCTTAATGCAAAAGAACGTCACTT 57.628 33.333 11.34 0.00 30.15 3.16
6970 14290 6.791303 TCTTAATGCAAAAGAACGTCACTTT 58.209 32.000 11.34 12.71 38.91 2.66
6971 14291 7.921787 TCTTAATGCAAAAGAACGTCACTTTA 58.078 30.769 16.92 6.43 36.71 1.85
6972 14292 8.564574 TCTTAATGCAAAAGAACGTCACTTTAT 58.435 29.630 16.92 7.99 36.71 1.40
6973 14293 9.820229 CTTAATGCAAAAGAACGTCACTTTATA 57.180 29.630 16.92 9.62 36.71 0.98
6976 14296 8.673626 ATGCAAAAGAACGTCACTTTATATTG 57.326 30.769 16.92 13.40 36.71 1.90
6977 14297 6.580791 TGCAAAAGAACGTCACTTTATATTGC 59.419 34.615 21.75 21.75 37.62 3.56
6978 14298 6.033513 GCAAAAGAACGTCACTTTATATTGCC 59.966 38.462 19.88 10.42 36.71 4.52
6979 14299 6.811253 AAAGAACGTCACTTTATATTGCCA 57.189 33.333 15.64 0.00 36.09 4.92
6980 14300 5.796350 AGAACGTCACTTTATATTGCCAC 57.204 39.130 0.00 0.00 0.00 5.01
6981 14301 5.488341 AGAACGTCACTTTATATTGCCACT 58.512 37.500 0.00 0.00 0.00 4.00
6982 14302 5.938125 AGAACGTCACTTTATATTGCCACTT 59.062 36.000 0.00 0.00 0.00 3.16
6983 14303 5.545658 ACGTCACTTTATATTGCCACTTG 57.454 39.130 0.00 0.00 0.00 3.16
6984 14304 5.001232 ACGTCACTTTATATTGCCACTTGT 58.999 37.500 0.00 0.00 0.00 3.16
6985 14305 6.167685 ACGTCACTTTATATTGCCACTTGTA 58.832 36.000 0.00 0.00 0.00 2.41
6986 14306 6.821665 ACGTCACTTTATATTGCCACTTGTAT 59.178 34.615 0.00 0.00 0.00 2.29
6987 14307 7.125755 CGTCACTTTATATTGCCACTTGTATG 58.874 38.462 0.00 0.00 0.00 2.39
6988 14308 7.201609 CGTCACTTTATATTGCCACTTGTATGT 60.202 37.037 0.00 0.00 0.00 2.29
6989 14309 7.910162 GTCACTTTATATTGCCACTTGTATGTG 59.090 37.037 0.00 0.00 37.66 3.21
7003 14323 7.417612 CACTTGTATGTGGACCTTTATTATGC 58.582 38.462 0.00 0.00 34.56 3.14
7004 14324 7.066887 CACTTGTATGTGGACCTTTATTATGCA 59.933 37.037 0.00 0.00 34.56 3.96
7005 14325 7.283127 ACTTGTATGTGGACCTTTATTATGCAG 59.717 37.037 0.00 0.00 0.00 4.41
7006 14326 6.658849 TGTATGTGGACCTTTATTATGCAGT 58.341 36.000 0.00 0.00 0.00 4.40
7007 14327 6.765989 TGTATGTGGACCTTTATTATGCAGTC 59.234 38.462 0.00 0.00 0.00 3.51
7008 14328 4.523083 TGTGGACCTTTATTATGCAGTCC 58.477 43.478 9.85 9.85 43.31 3.85
7009 14329 3.560068 GTGGACCTTTATTATGCAGTCCG 59.440 47.826 11.52 0.00 45.44 4.79
7010 14330 3.199071 TGGACCTTTATTATGCAGTCCGT 59.801 43.478 11.52 0.00 45.44 4.69
7011 14331 3.808174 GGACCTTTATTATGCAGTCCGTC 59.192 47.826 2.18 0.00 34.92 4.79
7012 14332 3.454375 ACCTTTATTATGCAGTCCGTCG 58.546 45.455 0.00 0.00 0.00 5.12
7013 14333 2.221055 CCTTTATTATGCAGTCCGTCGC 59.779 50.000 0.00 0.00 0.00 5.19
7014 14334 2.882927 TTATTATGCAGTCCGTCGCT 57.117 45.000 0.00 0.00 0.00 4.93
7015 14335 2.882927 TATTATGCAGTCCGTCGCTT 57.117 45.000 0.00 0.00 0.00 4.68
7016 14336 2.024176 ATTATGCAGTCCGTCGCTTT 57.976 45.000 0.00 0.00 0.00 3.51
7017 14337 1.803334 TTATGCAGTCCGTCGCTTTT 58.197 45.000 0.00 0.00 0.00 2.27
7018 14338 2.658373 TATGCAGTCCGTCGCTTTTA 57.342 45.000 0.00 0.00 0.00 1.52
7019 14339 2.024176 ATGCAGTCCGTCGCTTTTAT 57.976 45.000 0.00 0.00 0.00 1.40
7020 14340 1.803334 TGCAGTCCGTCGCTTTTATT 58.197 45.000 0.00 0.00 0.00 1.40
7021 14341 1.463056 TGCAGTCCGTCGCTTTTATTG 59.537 47.619 0.00 0.00 0.00 1.90
7022 14342 1.790481 GCAGTCCGTCGCTTTTATTGC 60.790 52.381 0.00 0.00 0.00 3.56
7023 14343 1.732259 CAGTCCGTCGCTTTTATTGCT 59.268 47.619 0.00 0.00 0.00 3.91
7024 14344 2.159627 CAGTCCGTCGCTTTTATTGCTT 59.840 45.455 0.00 0.00 0.00 3.91
7025 14345 2.415512 AGTCCGTCGCTTTTATTGCTTC 59.584 45.455 0.00 0.00 0.00 3.86
7026 14346 1.735571 TCCGTCGCTTTTATTGCTTCC 59.264 47.619 0.00 0.00 0.00 3.46
7027 14347 1.466950 CCGTCGCTTTTATTGCTTCCA 59.533 47.619 0.00 0.00 0.00 3.53
7028 14348 2.505866 CGTCGCTTTTATTGCTTCCAC 58.494 47.619 0.00 0.00 0.00 4.02
7029 14349 2.095969 CGTCGCTTTTATTGCTTCCACA 60.096 45.455 0.00 0.00 0.00 4.17
7030 14350 3.608241 CGTCGCTTTTATTGCTTCCACAA 60.608 43.478 0.00 0.00 0.00 3.33
7031 14351 3.668656 GTCGCTTTTATTGCTTCCACAAC 59.331 43.478 0.00 0.00 31.03 3.32
7032 14352 3.316588 TCGCTTTTATTGCTTCCACAACA 59.683 39.130 0.00 0.00 31.03 3.33
7033 14353 4.047822 CGCTTTTATTGCTTCCACAACAA 58.952 39.130 0.00 0.00 31.03 2.83
7034 14354 4.148696 CGCTTTTATTGCTTCCACAACAAG 59.851 41.667 0.00 0.00 31.03 3.16
7035 14355 5.288804 GCTTTTATTGCTTCCACAACAAGA 58.711 37.500 0.00 0.00 31.03 3.02
7036 14356 5.928264 GCTTTTATTGCTTCCACAACAAGAT 59.072 36.000 0.00 0.00 31.03 2.40
7037 14357 6.089954 GCTTTTATTGCTTCCACAACAAGATC 59.910 38.462 0.00 0.00 31.03 2.75
7038 14358 3.837213 ATTGCTTCCACAACAAGATCG 57.163 42.857 0.00 0.00 31.03 3.69
7039 14359 2.254546 TGCTTCCACAACAAGATCGT 57.745 45.000 0.00 0.00 0.00 3.73
7040 14360 3.394674 TGCTTCCACAACAAGATCGTA 57.605 42.857 0.00 0.00 0.00 3.43
7041 14361 3.937814 TGCTTCCACAACAAGATCGTAT 58.062 40.909 0.00 0.00 0.00 3.06
7042 14362 5.079689 TGCTTCCACAACAAGATCGTATA 57.920 39.130 0.00 0.00 0.00 1.47
7043 14363 5.483811 TGCTTCCACAACAAGATCGTATAA 58.516 37.500 0.00 0.00 0.00 0.98
7044 14364 5.935206 TGCTTCCACAACAAGATCGTATAAA 59.065 36.000 0.00 0.00 0.00 1.40
7045 14365 6.092122 TGCTTCCACAACAAGATCGTATAAAG 59.908 38.462 0.00 0.00 0.00 1.85
7046 14366 6.417191 TTCCACAACAAGATCGTATAAAGC 57.583 37.500 0.00 0.00 0.00 3.51
7047 14367 5.730550 TCCACAACAAGATCGTATAAAGCT 58.269 37.500 0.00 0.00 0.00 3.74
7048 14368 6.170506 TCCACAACAAGATCGTATAAAGCTT 58.829 36.000 0.00 0.00 0.00 3.74
7049 14369 7.324935 TCCACAACAAGATCGTATAAAGCTTA 58.675 34.615 0.00 0.00 0.00 3.09
7050 14370 7.985184 TCCACAACAAGATCGTATAAAGCTTAT 59.015 33.333 0.00 0.00 0.00 1.73
7051 14371 8.612619 CCACAACAAGATCGTATAAAGCTTATT 58.387 33.333 0.00 0.00 0.00 1.40
7052 14372 9.988350 CACAACAAGATCGTATAAAGCTTATTT 57.012 29.630 0.00 0.00 0.00 1.40
7059 14379 8.983724 AGATCGTATAAAGCTTATTTTCTCTGC 58.016 33.333 0.00 0.00 0.00 4.26
7060 14380 8.662781 ATCGTATAAAGCTTATTTTCTCTGCA 57.337 30.769 0.00 0.00 0.00 4.41
7061 14381 7.906160 TCGTATAAAGCTTATTTTCTCTGCAC 58.094 34.615 0.00 0.00 0.00 4.57
7062 14382 7.764443 TCGTATAAAGCTTATTTTCTCTGCACT 59.236 33.333 0.00 0.00 0.00 4.40
7063 14383 9.031360 CGTATAAAGCTTATTTTCTCTGCACTA 57.969 33.333 0.00 0.00 0.00 2.74
7069 14389 9.454859 AAGCTTATTTTCTCTGCACTAATAAGT 57.545 29.630 0.00 0.00 39.35 2.24
7070 14390 9.103861 AGCTTATTTTCTCTGCACTAATAAGTC 57.896 33.333 0.00 0.00 39.35 3.01
7071 14391 8.883731 GCTTATTTTCTCTGCACTAATAAGTCA 58.116 33.333 0.00 0.00 39.35 3.41
7074 14394 6.668541 TTTCTCTGCACTAATAAGTCATGC 57.331 37.500 0.00 0.00 31.97 4.06
7075 14395 5.343307 TCTCTGCACTAATAAGTCATGCA 57.657 39.130 0.00 0.00 31.97 3.96
7076 14396 5.922053 TCTCTGCACTAATAAGTCATGCAT 58.078 37.500 0.00 0.00 33.26 3.96
7077 14397 7.054491 TCTCTGCACTAATAAGTCATGCATA 57.946 36.000 0.00 0.00 33.26 3.14
7078 14398 7.674120 TCTCTGCACTAATAAGTCATGCATAT 58.326 34.615 0.00 0.00 33.26 1.78
7079 14399 8.152898 TCTCTGCACTAATAAGTCATGCATATT 58.847 33.333 0.00 0.00 33.26 1.28
7080 14400 8.681486 TCTGCACTAATAAGTCATGCATATTT 57.319 30.769 0.00 0.00 33.26 1.40
7081 14401 9.777297 TCTGCACTAATAAGTCATGCATATTTA 57.223 29.630 0.00 0.00 33.26 1.40
7083 14403 9.777297 TGCACTAATAAGTCATGCATATTTAGA 57.223 29.630 0.00 0.00 31.97 2.10
7109 14429 4.717991 CAATTTTGATTGCCTGCAACATG 58.282 39.130 6.72 0.00 38.88 3.21
7110 14430 2.459060 TTTGATTGCCTGCAACATGG 57.541 45.000 6.72 0.00 38.88 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 42 8.103305 AGAAATATTGAGCAGAAGAAACACCTA 58.897 33.333 0.00 0.00 0.00 3.08
155 159 0.748005 GGAATGCCGGCAGCTAGAAA 60.748 55.000 35.36 8.54 44.23 2.52
159 163 4.189580 GGGGAATGCCGGCAGCTA 62.190 66.667 35.36 11.67 44.23 3.32
293 297 1.880941 AGTCTGGGGGAGTTGATACC 58.119 55.000 0.00 0.00 0.00 2.73
309 313 1.819903 AGGACAAGCGAGGTCTAAGTC 59.180 52.381 5.63 0.00 35.61 3.01
310 314 1.926108 AGGACAAGCGAGGTCTAAGT 58.074 50.000 5.63 0.00 35.61 2.24
357 361 7.633789 ACACCTCTATTTCTAAACATGTGGAT 58.366 34.615 0.00 0.00 0.00 3.41
450 457 8.768955 GTTACTTGAGCATAAGAAGTCATATGG 58.231 37.037 2.13 0.00 30.61 2.74
541 548 9.772973 ATGATAAATTGCAATTGCTACAATGAT 57.227 25.926 29.37 16.97 42.66 2.45
739 746 7.722728 AGCATGGACTATTATTGTTGACATCAT 59.277 33.333 0.00 0.00 0.00 2.45
947 955 4.215827 CCCAGCTAATGAAAGCATGAGATC 59.784 45.833 0.00 0.00 45.30 2.75
954 962 2.715046 CTGACCCAGCTAATGAAAGCA 58.285 47.619 0.00 0.00 45.30 3.91
1124 1134 4.087892 GCGAGCAAGGAGAGGGCA 62.088 66.667 0.00 0.00 0.00 5.36
1182 1192 2.123251 GGAGGAGGGAGATCGGCA 60.123 66.667 0.00 0.00 0.00 5.69
1285 1342 1.110518 GGCTAACGAGAGGGAGAGGG 61.111 65.000 0.00 0.00 0.00 4.30
1334 1391 3.766691 GCCGCGACCTTCTACCCA 61.767 66.667 8.23 0.00 0.00 4.51
1350 1407 0.884704 TTCCTTTGTGGCAGACTCGC 60.885 55.000 0.00 0.00 35.26 5.03
1362 1419 0.251077 AGTCCCTGCTGCTTCCTTTG 60.251 55.000 0.00 0.00 0.00 2.77
1363 1420 0.480252 AAGTCCCTGCTGCTTCCTTT 59.520 50.000 0.00 0.00 0.00 3.11
1670 1767 2.290367 CTGAATGTTTCGAGTTGTGCCA 59.710 45.455 0.00 0.00 0.00 4.92
1731 5078 1.808411 GAGATTTGTCCACCGAGCAA 58.192 50.000 0.00 0.00 0.00 3.91
1852 5206 8.521170 ACTGAATATGTGTGTCTACTAAGCTA 57.479 34.615 0.00 0.00 0.00 3.32
1932 5347 3.907221 AGAATGCCAGCCTTTCATGTAT 58.093 40.909 0.00 0.00 31.79 2.29
2068 5483 7.993183 GCACCAAGCATATATACCAAGGTATAT 59.007 37.037 26.48 26.48 46.25 0.86
2069 5484 7.335627 GCACCAAGCATATATACCAAGGTATA 58.664 38.462 18.50 18.50 43.45 1.47
2182 5597 1.899142 ACCATTAAAAACTGCGCCCAT 59.101 42.857 4.18 0.00 0.00 4.00
2351 5766 1.197721 GTGCGTGGTTCAGATTTCCTG 59.802 52.381 0.00 0.00 44.27 3.86
2556 6038 0.988145 TGGATCATGGGACCTGGGAC 60.988 60.000 0.00 0.00 0.00 4.46
2822 6327 2.955660 TCCAATTTCCACACACTTGTCC 59.044 45.455 0.00 0.00 31.66 4.02
3397 8822 5.573380 TGAGCATCTAATTAAGGGAGCAT 57.427 39.130 0.00 0.00 34.92 3.79
3528 8957 4.332819 GCATCTGTAGCTCCAACGTAAAAT 59.667 41.667 0.00 0.00 0.00 1.82
3534 8963 1.863454 GATGCATCTGTAGCTCCAACG 59.137 52.381 19.70 0.00 0.00 4.10
3557 8986 7.174253 TGCAGATTTTAGTTTCCGTAAATGACT 59.826 33.333 0.00 0.00 0.00 3.41
3798 10232 1.047002 CCCACCAAACAATGAAGGCA 58.953 50.000 0.00 0.00 0.00 4.75
3827 10261 5.362143 TGAAAATTCTTCAACCACACCATGA 59.638 36.000 0.00 0.00 0.00 3.07
3829 10263 5.598005 TCTGAAAATTCTTCAACCACACCAT 59.402 36.000 5.12 0.00 0.00 3.55
3858 10292 0.725784 GTTGCACGCAAGATGAACCG 60.726 55.000 4.35 0.00 43.62 4.44
5503 12462 6.317140 CCAGAACATGTAGTACAAAGCATCAT 59.683 38.462 7.16 0.00 0.00 2.45
5992 13189 5.466728 CAGCAGCACTTTACAGAAAGAAGTA 59.533 40.000 4.50 0.00 44.23 2.24
6673 13993 9.917129 TCATTTTGCATGGACATATTCAATATC 57.083 29.630 0.00 0.00 0.00 1.63
6776 14096 9.212641 CCTCGTGTTTGAAAGATCATGATATAT 57.787 33.333 8.54 0.00 34.96 0.86
6777 14097 8.421002 TCCTCGTGTTTGAAAGATCATGATATA 58.579 33.333 8.54 0.00 34.96 0.86
6778 14098 7.275183 TCCTCGTGTTTGAAAGATCATGATAT 58.725 34.615 8.54 1.65 34.96 1.63
6779 14099 6.639563 TCCTCGTGTTTGAAAGATCATGATA 58.360 36.000 8.54 0.00 34.96 2.15
6780 14100 5.491070 TCCTCGTGTTTGAAAGATCATGAT 58.509 37.500 8.25 8.25 34.96 2.45
6781 14101 4.893608 TCCTCGTGTTTGAAAGATCATGA 58.106 39.130 0.00 0.00 34.96 3.07
6782 14102 4.436584 GCTCCTCGTGTTTGAAAGATCATG 60.437 45.833 0.00 0.00 34.96 3.07
6783 14103 3.686726 GCTCCTCGTGTTTGAAAGATCAT 59.313 43.478 0.00 0.00 34.96 2.45
6784 14104 3.067106 GCTCCTCGTGTTTGAAAGATCA 58.933 45.455 0.00 0.00 0.00 2.92
6785 14105 3.330267 AGCTCCTCGTGTTTGAAAGATC 58.670 45.455 0.00 0.00 0.00 2.75
6786 14106 3.409026 AGCTCCTCGTGTTTGAAAGAT 57.591 42.857 0.00 0.00 0.00 2.40
6787 14107 2.872245 CAAGCTCCTCGTGTTTGAAAGA 59.128 45.455 0.00 0.00 0.00 2.52
6788 14108 2.603173 GCAAGCTCCTCGTGTTTGAAAG 60.603 50.000 0.00 0.00 0.00 2.62
6789 14109 1.333619 GCAAGCTCCTCGTGTTTGAAA 59.666 47.619 0.00 0.00 0.00 2.69
6790 14110 0.944386 GCAAGCTCCTCGTGTTTGAA 59.056 50.000 0.00 0.00 0.00 2.69
6791 14111 0.179059 TGCAAGCTCCTCGTGTTTGA 60.179 50.000 0.00 0.00 0.00 2.69
6792 14112 0.662619 TTGCAAGCTCCTCGTGTTTG 59.337 50.000 0.00 0.00 0.00 2.93
6793 14113 1.388547 TTTGCAAGCTCCTCGTGTTT 58.611 45.000 0.00 0.00 0.00 2.83
6794 14114 1.334869 CTTTTGCAAGCTCCTCGTGTT 59.665 47.619 0.00 0.00 0.00 3.32
6795 14115 0.947244 CTTTTGCAAGCTCCTCGTGT 59.053 50.000 0.00 0.00 0.00 4.49
6796 14116 0.239347 CCTTTTGCAAGCTCCTCGTG 59.761 55.000 0.00 0.00 0.00 4.35
6797 14117 0.108585 TCCTTTTGCAAGCTCCTCGT 59.891 50.000 0.00 0.00 0.00 4.18
6798 14118 1.457346 ATCCTTTTGCAAGCTCCTCG 58.543 50.000 0.00 0.00 0.00 4.63
6799 14119 5.391312 TTTTATCCTTTTGCAAGCTCCTC 57.609 39.130 0.00 0.00 0.00 3.71
6800 14120 5.481473 TCATTTTATCCTTTTGCAAGCTCCT 59.519 36.000 0.00 0.00 0.00 3.69
6801 14121 5.723295 TCATTTTATCCTTTTGCAAGCTCC 58.277 37.500 0.00 0.00 0.00 4.70
6802 14122 7.656707 TTTCATTTTATCCTTTTGCAAGCTC 57.343 32.000 0.00 0.00 0.00 4.09
6803 14123 8.449251 TTTTTCATTTTATCCTTTTGCAAGCT 57.551 26.923 0.00 0.00 0.00 3.74
6804 14124 7.804600 CCTTTTTCATTTTATCCTTTTGCAAGC 59.195 33.333 0.00 0.00 0.00 4.01
6805 14125 8.291740 CCCTTTTTCATTTTATCCTTTTGCAAG 58.708 33.333 0.00 0.00 0.00 4.01
6806 14126 7.995488 TCCCTTTTTCATTTTATCCTTTTGCAA 59.005 29.630 0.00 0.00 0.00 4.08
6807 14127 7.512992 TCCCTTTTTCATTTTATCCTTTTGCA 58.487 30.769 0.00 0.00 0.00 4.08
6808 14128 7.977789 TCCCTTTTTCATTTTATCCTTTTGC 57.022 32.000 0.00 0.00 0.00 3.68
6810 14130 9.573166 CCTTTCCCTTTTTCATTTTATCCTTTT 57.427 29.630 0.00 0.00 0.00 2.27
6811 14131 8.723365 ACCTTTCCCTTTTTCATTTTATCCTTT 58.277 29.630 0.00 0.00 0.00 3.11
6812 14132 8.156820 CACCTTTCCCTTTTTCATTTTATCCTT 58.843 33.333 0.00 0.00 0.00 3.36
6813 14133 7.512402 TCACCTTTCCCTTTTTCATTTTATCCT 59.488 33.333 0.00 0.00 0.00 3.24
6814 14134 7.676004 TCACCTTTCCCTTTTTCATTTTATCC 58.324 34.615 0.00 0.00 0.00 2.59
6815 14135 9.208022 CTTCACCTTTCCCTTTTTCATTTTATC 57.792 33.333 0.00 0.00 0.00 1.75
6816 14136 8.933653 TCTTCACCTTTCCCTTTTTCATTTTAT 58.066 29.630 0.00 0.00 0.00 1.40
6817 14137 8.312669 TCTTCACCTTTCCCTTTTTCATTTTA 57.687 30.769 0.00 0.00 0.00 1.52
6818 14138 7.194112 TCTTCACCTTTCCCTTTTTCATTTT 57.806 32.000 0.00 0.00 0.00 1.82
6819 14139 6.806668 TCTTCACCTTTCCCTTTTTCATTT 57.193 33.333 0.00 0.00 0.00 2.32
6820 14140 6.554605 TGATCTTCACCTTTCCCTTTTTCATT 59.445 34.615 0.00 0.00 0.00 2.57
6821 14141 6.015095 GTGATCTTCACCTTTCCCTTTTTCAT 60.015 38.462 0.00 0.00 41.37 2.57
6822 14142 5.301805 GTGATCTTCACCTTTCCCTTTTTCA 59.698 40.000 0.00 0.00 41.37 2.69
6823 14143 5.773575 GTGATCTTCACCTTTCCCTTTTTC 58.226 41.667 0.00 0.00 41.37 2.29
6824 14144 5.791336 GTGATCTTCACCTTTCCCTTTTT 57.209 39.130 0.00 0.00 41.37 1.94
6836 14156 3.373439 GCTTGAGTCATGGTGATCTTCAC 59.627 47.826 8.02 0.00 46.23 3.18
6837 14157 3.008266 TGCTTGAGTCATGGTGATCTTCA 59.992 43.478 8.02 0.00 0.00 3.02
6838 14158 3.603532 TGCTTGAGTCATGGTGATCTTC 58.396 45.455 8.02 0.00 0.00 2.87
6839 14159 3.708403 TGCTTGAGTCATGGTGATCTT 57.292 42.857 8.02 0.00 0.00 2.40
6840 14160 3.928005 ATGCTTGAGTCATGGTGATCT 57.072 42.857 8.02 0.00 0.00 2.75
6841 14161 5.587844 ACTTTATGCTTGAGTCATGGTGATC 59.412 40.000 8.02 0.00 0.00 2.92
6842 14162 5.503927 ACTTTATGCTTGAGTCATGGTGAT 58.496 37.500 8.02 0.00 0.00 3.06
6843 14163 4.910195 ACTTTATGCTTGAGTCATGGTGA 58.090 39.130 8.02 0.00 0.00 4.02
6844 14164 6.741992 TTACTTTATGCTTGAGTCATGGTG 57.258 37.500 8.02 0.00 0.00 4.17
6845 14165 7.759489 TTTTACTTTATGCTTGAGTCATGGT 57.241 32.000 8.02 0.00 0.00 3.55
6871 14191 8.204160 GCAAAGGGCCTATCTTTTATTTTATGT 58.796 33.333 6.41 0.00 36.11 2.29
6872 14192 8.203485 TGCAAAGGGCCTATCTTTTATTTTATG 58.797 33.333 6.41 0.00 43.89 1.90
6873 14193 8.317776 TGCAAAGGGCCTATCTTTTATTTTAT 57.682 30.769 6.41 0.00 43.89 1.40
6874 14194 7.617723 TCTGCAAAGGGCCTATCTTTTATTTTA 59.382 33.333 6.41 0.00 43.89 1.52
6875 14195 6.440328 TCTGCAAAGGGCCTATCTTTTATTTT 59.560 34.615 6.41 0.00 43.89 1.82
6876 14196 5.957774 TCTGCAAAGGGCCTATCTTTTATTT 59.042 36.000 6.41 0.00 43.89 1.40
6877 14197 5.518865 TCTGCAAAGGGCCTATCTTTTATT 58.481 37.500 6.41 0.00 43.89 1.40
6878 14198 5.129368 TCTGCAAAGGGCCTATCTTTTAT 57.871 39.130 6.41 0.00 43.89 1.40
6879 14199 4.526970 CTCTGCAAAGGGCCTATCTTTTA 58.473 43.478 6.41 0.00 43.89 1.52
6880 14200 3.359950 CTCTGCAAAGGGCCTATCTTTT 58.640 45.455 6.41 0.00 43.89 2.27
6881 14201 2.357569 CCTCTGCAAAGGGCCTATCTTT 60.358 50.000 6.41 0.36 43.89 2.52
6882 14202 1.213926 CCTCTGCAAAGGGCCTATCTT 59.786 52.381 6.41 0.00 43.89 2.40
6883 14203 0.842635 CCTCTGCAAAGGGCCTATCT 59.157 55.000 6.41 0.00 43.89 1.98
6884 14204 3.410960 CCTCTGCAAAGGGCCTATC 57.589 57.895 6.41 0.00 43.89 2.08
6891 14211 0.037303 TCTGCTTCCCTCTGCAAAGG 59.963 55.000 0.00 0.00 38.81 3.11
6892 14212 1.451067 CTCTGCTTCCCTCTGCAAAG 58.549 55.000 0.00 0.00 38.81 2.77
6893 14213 0.037303 CCTCTGCTTCCCTCTGCAAA 59.963 55.000 0.00 0.00 38.81 3.68
6894 14214 1.130054 ACCTCTGCTTCCCTCTGCAA 61.130 55.000 0.00 0.00 38.81 4.08
6895 14215 1.130054 AACCTCTGCTTCCCTCTGCA 61.130 55.000 0.00 0.00 37.63 4.41
6896 14216 0.676151 CAACCTCTGCTTCCCTCTGC 60.676 60.000 0.00 0.00 0.00 4.26
6897 14217 0.689623 ACAACCTCTGCTTCCCTCTG 59.310 55.000 0.00 0.00 0.00 3.35
6898 14218 0.980423 GACAACCTCTGCTTCCCTCT 59.020 55.000 0.00 0.00 0.00 3.69
6899 14219 0.687354 TGACAACCTCTGCTTCCCTC 59.313 55.000 0.00 0.00 0.00 4.30
6900 14220 1.004044 CATGACAACCTCTGCTTCCCT 59.996 52.381 0.00 0.00 0.00 4.20
6901 14221 1.271597 ACATGACAACCTCTGCTTCCC 60.272 52.381 0.00 0.00 0.00 3.97
6902 14222 1.808945 CACATGACAACCTCTGCTTCC 59.191 52.381 0.00 0.00 0.00 3.46
6903 14223 1.198637 GCACATGACAACCTCTGCTTC 59.801 52.381 0.00 0.00 0.00 3.86
6904 14224 1.202855 AGCACATGACAACCTCTGCTT 60.203 47.619 0.00 0.00 30.81 3.91
6905 14225 0.399454 AGCACATGACAACCTCTGCT 59.601 50.000 0.00 0.00 0.00 4.24
6906 14226 1.242076 AAGCACATGACAACCTCTGC 58.758 50.000 0.00 0.00 0.00 4.26
6907 14227 3.996150 AAAAGCACATGACAACCTCTG 57.004 42.857 0.00 0.00 0.00 3.35
6908 14228 4.074970 CCTAAAAGCACATGACAACCTCT 58.925 43.478 0.00 0.00 0.00 3.69
6909 14229 3.191371 CCCTAAAAGCACATGACAACCTC 59.809 47.826 0.00 0.00 0.00 3.85
6910 14230 3.157087 CCCTAAAAGCACATGACAACCT 58.843 45.455 0.00 0.00 0.00 3.50
6911 14231 2.890945 ACCCTAAAAGCACATGACAACC 59.109 45.455 0.00 0.00 0.00 3.77
6912 14232 4.298332 CAACCCTAAAAGCACATGACAAC 58.702 43.478 0.00 0.00 0.00 3.32
6913 14233 3.320541 CCAACCCTAAAAGCACATGACAA 59.679 43.478 0.00 0.00 0.00 3.18
6914 14234 2.890311 CCAACCCTAAAAGCACATGACA 59.110 45.455 0.00 0.00 0.00 3.58
6915 14235 3.153919 TCCAACCCTAAAAGCACATGAC 58.846 45.455 0.00 0.00 0.00 3.06
6916 14236 3.517296 TCCAACCCTAAAAGCACATGA 57.483 42.857 0.00 0.00 0.00 3.07
6917 14237 3.676873 GCATCCAACCCTAAAAGCACATG 60.677 47.826 0.00 0.00 0.00 3.21
6918 14238 2.497273 GCATCCAACCCTAAAAGCACAT 59.503 45.455 0.00 0.00 0.00 3.21
6919 14239 1.892474 GCATCCAACCCTAAAAGCACA 59.108 47.619 0.00 0.00 0.00 4.57
6920 14240 1.892474 TGCATCCAACCCTAAAAGCAC 59.108 47.619 0.00 0.00 0.00 4.40
6921 14241 2.300956 TGCATCCAACCCTAAAAGCA 57.699 45.000 0.00 0.00 0.00 3.91
6922 14242 5.337578 TTTATGCATCCAACCCTAAAAGC 57.662 39.130 0.19 0.00 0.00 3.51
6923 14243 7.785033 AGATTTTATGCATCCAACCCTAAAAG 58.215 34.615 0.19 0.00 0.00 2.27
6924 14244 7.732222 AGATTTTATGCATCCAACCCTAAAA 57.268 32.000 0.19 2.08 0.00 1.52
6925 14245 7.732222 AAGATTTTATGCATCCAACCCTAAA 57.268 32.000 0.19 0.00 0.00 1.85
6926 14246 8.830915 TTAAGATTTTATGCATCCAACCCTAA 57.169 30.769 0.19 0.00 0.00 2.69
6927 14247 8.859090 CATTAAGATTTTATGCATCCAACCCTA 58.141 33.333 0.19 0.00 0.00 3.53
6928 14248 7.687592 GCATTAAGATTTTATGCATCCAACCCT 60.688 37.037 0.19 0.00 38.08 4.34
6929 14249 6.424812 GCATTAAGATTTTATGCATCCAACCC 59.575 38.462 0.19 0.00 38.08 4.11
6930 14250 6.985645 TGCATTAAGATTTTATGCATCCAACC 59.014 34.615 0.19 0.00 42.46 3.77
6931 14251 8.422973 TTGCATTAAGATTTTATGCATCCAAC 57.577 30.769 13.94 0.00 45.93 3.77
6932 14252 9.445878 TTTTGCATTAAGATTTTATGCATCCAA 57.554 25.926 13.94 0.00 45.93 3.53
6933 14253 9.100554 CTTTTGCATTAAGATTTTATGCATCCA 57.899 29.630 13.94 0.00 45.93 3.41
6934 14254 9.316730 TCTTTTGCATTAAGATTTTATGCATCC 57.683 29.630 13.94 0.00 45.93 3.51
6937 14257 8.646356 CGTTCTTTTGCATTAAGATTTTATGCA 58.354 29.630 10.37 10.37 45.15 3.96
6938 14258 8.647226 ACGTTCTTTTGCATTAAGATTTTATGC 58.353 29.630 11.30 5.99 38.60 3.14
6940 14260 9.906660 TGACGTTCTTTTGCATTAAGATTTTAT 57.093 25.926 11.30 0.00 32.09 1.40
6941 14261 9.176181 GTGACGTTCTTTTGCATTAAGATTTTA 57.824 29.630 11.30 0.00 32.09 1.52
6942 14262 7.920682 AGTGACGTTCTTTTGCATTAAGATTTT 59.079 29.630 11.30 1.43 32.09 1.82
6943 14263 7.425606 AGTGACGTTCTTTTGCATTAAGATTT 58.574 30.769 11.30 1.71 32.09 2.17
6944 14264 6.970484 AGTGACGTTCTTTTGCATTAAGATT 58.030 32.000 11.30 1.99 32.09 2.40
6945 14265 6.560253 AGTGACGTTCTTTTGCATTAAGAT 57.440 33.333 11.30 0.00 32.09 2.40
6946 14266 6.371809 AAGTGACGTTCTTTTGCATTAAGA 57.628 33.333 7.49 7.49 0.00 2.10
6947 14267 8.728088 ATAAAGTGACGTTCTTTTGCATTAAG 57.272 30.769 19.30 0.00 36.65 1.85
6950 14270 9.128107 CAATATAAAGTGACGTTCTTTTGCATT 57.872 29.630 19.30 14.33 36.65 3.56
6951 14271 7.273381 GCAATATAAAGTGACGTTCTTTTGCAT 59.727 33.333 22.02 14.75 36.15 3.96
6952 14272 6.580791 GCAATATAAAGTGACGTTCTTTTGCA 59.419 34.615 22.02 10.80 36.15 4.08
6953 14273 6.033513 GGCAATATAAAGTGACGTTCTTTTGC 59.966 38.462 19.30 19.97 35.75 3.68
6954 14274 7.060633 GTGGCAATATAAAGTGACGTTCTTTTG 59.939 37.037 19.30 14.18 36.65 2.44
6955 14275 7.040686 AGTGGCAATATAAAGTGACGTTCTTTT 60.041 33.333 19.30 9.96 36.65 2.27
6956 14276 6.430000 AGTGGCAATATAAAGTGACGTTCTTT 59.570 34.615 18.52 18.52 38.45 2.52
6957 14277 5.938125 AGTGGCAATATAAAGTGACGTTCTT 59.062 36.000 0.00 0.00 28.66 2.52
6958 14278 5.488341 AGTGGCAATATAAAGTGACGTTCT 58.512 37.500 0.00 0.00 28.66 3.01
6959 14279 5.796350 AGTGGCAATATAAAGTGACGTTC 57.204 39.130 0.00 0.00 28.66 3.95
6960 14280 5.472137 ACAAGTGGCAATATAAAGTGACGTT 59.528 36.000 0.00 0.00 28.66 3.99
6961 14281 5.001232 ACAAGTGGCAATATAAAGTGACGT 58.999 37.500 0.00 0.00 28.66 4.34
6962 14282 5.545658 ACAAGTGGCAATATAAAGTGACG 57.454 39.130 0.00 0.00 28.66 4.35
6963 14283 7.910162 CACATACAAGTGGCAATATAAAGTGAC 59.090 37.037 0.00 0.00 35.88 3.67
6964 14284 7.984391 CACATACAAGTGGCAATATAAAGTGA 58.016 34.615 0.00 0.00 35.88 3.41
6978 14298 7.066887 TGCATAATAAAGGTCCACATACAAGTG 59.933 37.037 0.00 0.00 39.21 3.16
6979 14299 7.116075 TGCATAATAAAGGTCCACATACAAGT 58.884 34.615 0.00 0.00 0.00 3.16
6980 14300 7.283127 ACTGCATAATAAAGGTCCACATACAAG 59.717 37.037 0.00 0.00 0.00 3.16
6981 14301 7.116075 ACTGCATAATAAAGGTCCACATACAA 58.884 34.615 0.00 0.00 0.00 2.41
6982 14302 6.658849 ACTGCATAATAAAGGTCCACATACA 58.341 36.000 0.00 0.00 0.00 2.29
6983 14303 6.204882 GGACTGCATAATAAAGGTCCACATAC 59.795 42.308 11.47 0.00 41.75 2.39
6984 14304 6.296026 GGACTGCATAATAAAGGTCCACATA 58.704 40.000 11.47 0.00 41.75 2.29
6985 14305 5.133221 GGACTGCATAATAAAGGTCCACAT 58.867 41.667 11.47 0.00 41.75 3.21
6986 14306 4.523083 GGACTGCATAATAAAGGTCCACA 58.477 43.478 11.47 0.00 41.75 4.17
6987 14307 3.560068 CGGACTGCATAATAAAGGTCCAC 59.440 47.826 15.34 0.00 42.10 4.02
6988 14308 3.199071 ACGGACTGCATAATAAAGGTCCA 59.801 43.478 15.34 0.00 42.10 4.02
6989 14309 3.805207 ACGGACTGCATAATAAAGGTCC 58.195 45.455 7.29 7.29 39.60 4.46
6990 14310 3.489785 CGACGGACTGCATAATAAAGGTC 59.510 47.826 0.00 0.00 0.00 3.85
6991 14311 3.454375 CGACGGACTGCATAATAAAGGT 58.546 45.455 0.00 0.00 0.00 3.50
6992 14312 2.221055 GCGACGGACTGCATAATAAAGG 59.779 50.000 0.00 0.00 0.00 3.11
6993 14313 3.123804 AGCGACGGACTGCATAATAAAG 58.876 45.455 0.00 0.00 0.00 1.85
6994 14314 3.173668 AGCGACGGACTGCATAATAAA 57.826 42.857 0.00 0.00 0.00 1.40
6995 14315 2.882927 AGCGACGGACTGCATAATAA 57.117 45.000 0.00 0.00 0.00 1.40
6996 14316 2.882927 AAGCGACGGACTGCATAATA 57.117 45.000 0.00 0.00 0.00 0.98
6997 14317 2.024176 AAAGCGACGGACTGCATAAT 57.976 45.000 0.00 0.00 0.00 1.28
6998 14318 1.803334 AAAAGCGACGGACTGCATAA 58.197 45.000 0.00 0.00 0.00 1.90
6999 14319 2.658373 TAAAAGCGACGGACTGCATA 57.342 45.000 0.00 0.00 0.00 3.14
7000 14320 2.024176 ATAAAAGCGACGGACTGCAT 57.976 45.000 0.00 0.00 0.00 3.96
7001 14321 1.463056 CAATAAAAGCGACGGACTGCA 59.537 47.619 0.00 0.00 0.00 4.41
7002 14322 1.790481 GCAATAAAAGCGACGGACTGC 60.790 52.381 0.00 0.00 0.00 4.40
7003 14323 1.732259 AGCAATAAAAGCGACGGACTG 59.268 47.619 0.00 0.00 37.01 3.51
7004 14324 2.094762 AGCAATAAAAGCGACGGACT 57.905 45.000 0.00 0.00 37.01 3.85
7005 14325 2.475685 GGAAGCAATAAAAGCGACGGAC 60.476 50.000 0.00 0.00 37.01 4.79
7006 14326 1.735571 GGAAGCAATAAAAGCGACGGA 59.264 47.619 0.00 0.00 37.01 4.69
7007 14327 1.466950 TGGAAGCAATAAAAGCGACGG 59.533 47.619 0.00 0.00 37.01 4.79
7008 14328 2.095969 TGTGGAAGCAATAAAAGCGACG 60.096 45.455 0.00 0.00 37.01 5.12
7009 14329 3.552604 TGTGGAAGCAATAAAAGCGAC 57.447 42.857 0.00 0.00 37.01 5.19
7010 14330 3.316588 TGTTGTGGAAGCAATAAAAGCGA 59.683 39.130 0.00 0.00 37.01 4.93
7011 14331 3.637432 TGTTGTGGAAGCAATAAAAGCG 58.363 40.909 0.00 0.00 37.01 4.68
7012 14332 5.288804 TCTTGTTGTGGAAGCAATAAAAGC 58.711 37.500 0.00 0.00 31.05 3.51
7013 14333 6.306356 CGATCTTGTTGTGGAAGCAATAAAAG 59.694 38.462 0.00 0.00 31.05 2.27
7014 14334 6.148948 CGATCTTGTTGTGGAAGCAATAAAA 58.851 36.000 0.00 0.00 31.05 1.52
7015 14335 5.240623 ACGATCTTGTTGTGGAAGCAATAAA 59.759 36.000 0.00 0.00 31.05 1.40
7016 14336 4.759693 ACGATCTTGTTGTGGAAGCAATAA 59.240 37.500 0.00 0.00 0.00 1.40
7017 14337 4.323417 ACGATCTTGTTGTGGAAGCAATA 58.677 39.130 0.00 0.00 0.00 1.90
7018 14338 3.149196 ACGATCTTGTTGTGGAAGCAAT 58.851 40.909 0.00 0.00 0.00 3.56
7019 14339 2.571212 ACGATCTTGTTGTGGAAGCAA 58.429 42.857 0.00 0.00 0.00 3.91
7020 14340 2.254546 ACGATCTTGTTGTGGAAGCA 57.745 45.000 0.00 0.00 0.00 3.91
7021 14341 6.417191 TTTATACGATCTTGTTGTGGAAGC 57.583 37.500 0.00 0.00 0.00 3.86
7022 14342 6.313905 AGCTTTATACGATCTTGTTGTGGAAG 59.686 38.462 0.00 0.00 0.00 3.46
7023 14343 6.170506 AGCTTTATACGATCTTGTTGTGGAA 58.829 36.000 0.00 0.00 0.00 3.53
7024 14344 5.730550 AGCTTTATACGATCTTGTTGTGGA 58.269 37.500 0.00 0.00 0.00 4.02
7025 14345 6.422776 AAGCTTTATACGATCTTGTTGTGG 57.577 37.500 0.00 0.00 0.00 4.17
7026 14346 9.988350 AAATAAGCTTTATACGATCTTGTTGTG 57.012 29.630 3.20 0.00 0.00 3.33
7033 14353 8.983724 GCAGAGAAAATAAGCTTTATACGATCT 58.016 33.333 3.20 0.00 0.00 2.75
7034 14354 8.765219 TGCAGAGAAAATAAGCTTTATACGATC 58.235 33.333 3.20 0.00 0.00 3.69
7035 14355 8.552034 GTGCAGAGAAAATAAGCTTTATACGAT 58.448 33.333 3.20 0.00 0.00 3.73
7036 14356 7.764443 AGTGCAGAGAAAATAAGCTTTATACGA 59.236 33.333 3.20 0.00 0.00 3.43
7037 14357 7.910304 AGTGCAGAGAAAATAAGCTTTATACG 58.090 34.615 3.20 0.00 0.00 3.06
7043 14363 9.454859 ACTTATTAGTGCAGAGAAAATAAGCTT 57.545 29.630 3.48 3.48 40.97 3.74
7044 14364 9.103861 GACTTATTAGTGCAGAGAAAATAAGCT 57.896 33.333 17.49 10.36 40.97 3.74
7045 14365 8.883731 TGACTTATTAGTGCAGAGAAAATAAGC 58.116 33.333 17.49 13.46 40.97 3.09
7048 14368 8.830580 GCATGACTTATTAGTGCAGAGAAAATA 58.169 33.333 0.00 0.00 33.84 1.40
7049 14369 7.337689 TGCATGACTTATTAGTGCAGAGAAAAT 59.662 33.333 0.00 0.00 33.84 1.82
7050 14370 6.654582 TGCATGACTTATTAGTGCAGAGAAAA 59.345 34.615 0.00 0.00 33.84 2.29
7051 14371 6.172630 TGCATGACTTATTAGTGCAGAGAAA 58.827 36.000 0.00 0.00 33.84 2.52
7052 14372 5.733676 TGCATGACTTATTAGTGCAGAGAA 58.266 37.500 0.00 0.00 33.84 2.87
7053 14373 5.343307 TGCATGACTTATTAGTGCAGAGA 57.657 39.130 0.00 0.00 33.84 3.10
7054 14374 7.902387 ATATGCATGACTTATTAGTGCAGAG 57.098 36.000 10.16 0.00 35.21 3.35
7055 14375 8.681486 AAATATGCATGACTTATTAGTGCAGA 57.319 30.769 10.16 0.10 35.21 4.26
7057 14377 9.777297 TCTAAATATGCATGACTTATTAGTGCA 57.223 29.630 10.16 0.54 35.90 4.57
7087 14407 4.378978 CCATGTTGCAGGCAATCAAAATTG 60.379 41.667 10.21 5.73 44.31 2.32
7088 14408 3.754323 CCATGTTGCAGGCAATCAAAATT 59.246 39.130 10.21 0.00 38.28 1.82
7089 14409 3.340034 CCATGTTGCAGGCAATCAAAAT 58.660 40.909 10.21 0.00 38.28 1.82
7090 14410 2.768698 CCATGTTGCAGGCAATCAAAA 58.231 42.857 10.21 0.00 38.28 2.44
7091 14411 2.459060 CCATGTTGCAGGCAATCAAA 57.541 45.000 10.21 0.00 38.28 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.