Multiple sequence alignment - TraesCS2B01G315700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G315700 chr2B 100.000 4436 0 0 1 4436 451124053 451128488 0.000000e+00 8192.0
1 TraesCS2B01G315700 chr2B 91.711 2232 177 6 963 3192 451925235 451923010 0.000000e+00 3090.0
2 TraesCS2B01G315700 chr2B 74.947 938 210 21 2466 3389 9145177 9146103 1.490000e-109 407.0
3 TraesCS2B01G315700 chr2B 94.444 144 8 0 3179 3322 451915890 451915747 5.780000e-54 222.0
4 TraesCS2B01G315700 chr2B 93.590 78 5 0 3836 3913 451899671 451899594 2.800000e-22 117.0
5 TraesCS2B01G315700 chr2A 94.455 3697 165 22 558 4246 514859327 514862991 0.000000e+00 5655.0
6 TraesCS2B01G315700 chr2A 91.103 2911 198 23 570 3476 516096908 516094055 0.000000e+00 3884.0
7 TraesCS2B01G315700 chr2A 95.714 70 3 0 4236 4305 514864230 514864299 3.630000e-21 113.0
8 TraesCS2B01G315700 chr2A 96.552 58 2 0 4379 4436 514864298 514864355 3.650000e-16 97.1
9 TraesCS2B01G315700 chr2D 96.639 2916 86 3 562 3476 379857866 379860770 0.000000e+00 4831.0
10 TraesCS2B01G315700 chr2D 91.116 2814 202 27 677 3476 380690680 380687901 0.000000e+00 3768.0
11 TraesCS2B01G315700 chr2D 82.990 582 47 26 3726 4283 379860987 379861540 3.100000e-131 479.0
12 TraesCS2B01G315700 chr2D 90.798 163 11 2 4277 4436 379864252 379864413 9.660000e-52 215.0
13 TraesCS2B01G315700 chrUn 84.091 528 47 17 63 563 131591293 131590776 4.010000e-130 475.0
14 TraesCS2B01G315700 chrUn 83.516 546 48 22 45 563 124192131 124192661 5.190000e-129 472.0
15 TraesCS2B01G315700 chrUn 83.364 547 47 23 44 563 4582284 4582813 2.420000e-127 466.0
16 TraesCS2B01G315700 chr4D 83.544 158 25 1 404 561 459256252 459256096 3.580000e-31 147.0
17 TraesCS2B01G315700 chr6B 82.209 163 29 0 405 567 481265139 481264977 1.660000e-29 141.0
18 TraesCS2B01G315700 chr3A 81.707 164 26 4 400 561 486039354 486039193 2.780000e-27 134.0
19 TraesCS2B01G315700 chr5D 83.217 143 24 0 416 558 398324044 398324186 1.000000e-26 132.0
20 TraesCS2B01G315700 chr6A 81.879 149 26 1 425 572 79705847 79705699 1.680000e-24 124.0
21 TraesCS2B01G315700 chr3B 79.545 176 35 1 401 576 771777063 771777237 1.680000e-24 124.0
22 TraesCS2B01G315700 chr5A 89.130 46 3 2 3477 3521 680118326 680118282 6.200000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G315700 chr2B 451124053 451128488 4435 False 8192.000000 8192 100.000000 1 4436 1 chr2B.!!$F2 4435
1 TraesCS2B01G315700 chr2B 451923010 451925235 2225 True 3090.000000 3090 91.711000 963 3192 1 chr2B.!!$R3 2229
2 TraesCS2B01G315700 chr2B 9145177 9146103 926 False 407.000000 407 74.947000 2466 3389 1 chr2B.!!$F1 923
3 TraesCS2B01G315700 chr2A 516094055 516096908 2853 True 3884.000000 3884 91.103000 570 3476 1 chr2A.!!$R1 2906
4 TraesCS2B01G315700 chr2A 514859327 514864355 5028 False 1955.033333 5655 95.573667 558 4436 3 chr2A.!!$F1 3878
5 TraesCS2B01G315700 chr2D 380687901 380690680 2779 True 3768.000000 3768 91.116000 677 3476 1 chr2D.!!$R1 2799
6 TraesCS2B01G315700 chr2D 379857866 379864413 6547 False 1841.666667 4831 90.142333 562 4436 3 chr2D.!!$F1 3874
7 TraesCS2B01G315700 chrUn 131590776 131591293 517 True 475.000000 475 84.091000 63 563 1 chrUn.!!$R1 500
8 TraesCS2B01G315700 chrUn 124192131 124192661 530 False 472.000000 472 83.516000 45 563 1 chrUn.!!$F2 518
9 TraesCS2B01G315700 chrUn 4582284 4582813 529 False 466.000000 466 83.364000 44 563 1 chrUn.!!$F1 519

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
320 323 0.031994 GCAACGTGCCAACCTCAATT 59.968 50.0 0.00 0.00 37.42 2.32 F
986 995 0.040067 GGCAGCTTGTTTTCCAGTCG 60.040 55.0 0.00 0.00 0.00 4.18 F
2058 2068 0.533032 GGAGTACTGCAGGAGTGACC 59.467 60.0 19.93 7.24 35.96 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1627 1636 1.269998 CCCGCTAGACCAGTATGCTAC 59.730 57.143 0.00 0.0 31.97 3.58 R
2112 2122 2.512286 GCACTGATAGCAGCGCCA 60.512 61.111 9.83 0.0 46.26 5.69 R
3957 4150 0.113972 TGTTGGGCAATGGTCATGGA 59.886 50.000 0.00 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
124 127 8.986477 ATGTATTATGAAAACAAAACAGGCTC 57.014 30.769 0.00 0.00 0.00 4.70
125 128 7.081349 TGTATTATGAAAACAAAACAGGCTCG 58.919 34.615 0.00 0.00 0.00 5.03
126 129 2.861462 TGAAAACAAAACAGGCTCGG 57.139 45.000 0.00 0.00 0.00 4.63
127 130 2.370349 TGAAAACAAAACAGGCTCGGA 58.630 42.857 0.00 0.00 0.00 4.55
128 131 2.755655 TGAAAACAAAACAGGCTCGGAA 59.244 40.909 0.00 0.00 0.00 4.30
129 132 3.193691 TGAAAACAAAACAGGCTCGGAAA 59.806 39.130 0.00 0.00 0.00 3.13
130 133 3.878160 AAACAAAACAGGCTCGGAAAA 57.122 38.095 0.00 0.00 0.00 2.29
131 134 3.878160 AACAAAACAGGCTCGGAAAAA 57.122 38.095 0.00 0.00 0.00 1.94
132 135 3.436700 ACAAAACAGGCTCGGAAAAAG 57.563 42.857 0.00 0.00 0.00 2.27
133 136 2.100749 ACAAAACAGGCTCGGAAAAAGG 59.899 45.455 0.00 0.00 0.00 3.11
134 137 2.358322 AAACAGGCTCGGAAAAAGGA 57.642 45.000 0.00 0.00 0.00 3.36
135 138 2.586648 AACAGGCTCGGAAAAAGGAT 57.413 45.000 0.00 0.00 0.00 3.24
136 139 3.713826 AACAGGCTCGGAAAAAGGATA 57.286 42.857 0.00 0.00 0.00 2.59
137 140 3.268023 ACAGGCTCGGAAAAAGGATAG 57.732 47.619 0.00 0.00 0.00 2.08
138 141 2.092914 ACAGGCTCGGAAAAAGGATAGG 60.093 50.000 0.00 0.00 0.00 2.57
139 142 2.170607 CAGGCTCGGAAAAAGGATAGGA 59.829 50.000 0.00 0.00 0.00 2.94
140 143 2.844348 AGGCTCGGAAAAAGGATAGGAA 59.156 45.455 0.00 0.00 0.00 3.36
141 144 2.943690 GGCTCGGAAAAAGGATAGGAAC 59.056 50.000 0.00 0.00 0.00 3.62
142 145 3.370633 GGCTCGGAAAAAGGATAGGAACT 60.371 47.826 0.00 0.00 46.37 3.01
143 146 4.262617 GCTCGGAAAAAGGATAGGAACTT 58.737 43.478 0.00 0.00 41.75 2.66
144 147 4.095036 GCTCGGAAAAAGGATAGGAACTTG 59.905 45.833 0.00 0.00 41.75 3.16
145 148 5.488341 CTCGGAAAAAGGATAGGAACTTGA 58.512 41.667 0.00 0.00 41.75 3.02
146 149 5.488341 TCGGAAAAAGGATAGGAACTTGAG 58.512 41.667 0.00 0.00 41.75 3.02
147 150 5.247564 TCGGAAAAAGGATAGGAACTTGAGA 59.752 40.000 0.00 0.00 41.75 3.27
148 151 5.938125 CGGAAAAAGGATAGGAACTTGAGAA 59.062 40.000 0.00 0.00 41.75 2.87
149 152 6.430000 CGGAAAAAGGATAGGAACTTGAGAAA 59.570 38.462 0.00 0.00 41.75 2.52
150 153 7.040686 CGGAAAAAGGATAGGAACTTGAGAAAA 60.041 37.037 0.00 0.00 41.75 2.29
151 154 8.638873 GGAAAAAGGATAGGAACTTGAGAAAAA 58.361 33.333 0.00 0.00 41.75 1.94
171 174 5.476091 AAAATAAAATGGAAACCCGCAGA 57.524 34.783 0.00 0.00 0.00 4.26
172 175 5.476091 AAATAAAATGGAAACCCGCAGAA 57.524 34.783 0.00 0.00 0.00 3.02
173 176 5.476091 AATAAAATGGAAACCCGCAGAAA 57.524 34.783 0.00 0.00 0.00 2.52
174 177 3.828875 AAAATGGAAACCCGCAGAAAA 57.171 38.095 0.00 0.00 0.00 2.29
175 178 2.812358 AATGGAAACCCGCAGAAAAC 57.188 45.000 0.00 0.00 0.00 2.43
176 179 0.596082 ATGGAAACCCGCAGAAAACG 59.404 50.000 0.00 0.00 0.00 3.60
177 180 0.748729 TGGAAACCCGCAGAAAACGT 60.749 50.000 0.00 0.00 0.00 3.99
178 181 0.317519 GGAAACCCGCAGAAAACGTG 60.318 55.000 0.00 0.00 0.00 4.49
179 182 0.379316 GAAACCCGCAGAAAACGTGT 59.621 50.000 0.00 0.00 0.00 4.49
180 183 1.598601 GAAACCCGCAGAAAACGTGTA 59.401 47.619 0.00 0.00 0.00 2.90
181 184 0.939419 AACCCGCAGAAAACGTGTAC 59.061 50.000 0.00 0.00 0.00 2.90
182 185 0.179078 ACCCGCAGAAAACGTGTACA 60.179 50.000 0.00 0.00 0.00 2.90
183 186 0.511221 CCCGCAGAAAACGTGTACAG 59.489 55.000 0.00 0.00 0.00 2.74
184 187 1.493772 CCGCAGAAAACGTGTACAGA 58.506 50.000 0.00 0.00 0.00 3.41
185 188 1.455786 CCGCAGAAAACGTGTACAGAG 59.544 52.381 0.00 0.00 0.00 3.35
186 189 2.124903 CGCAGAAAACGTGTACAGAGT 58.875 47.619 0.00 0.00 0.00 3.24
187 190 2.097396 CGCAGAAAACGTGTACAGAGTG 60.097 50.000 0.00 0.00 0.00 3.51
188 191 3.120792 GCAGAAAACGTGTACAGAGTGA 58.879 45.455 0.00 0.00 0.00 3.41
189 192 3.741344 GCAGAAAACGTGTACAGAGTGAT 59.259 43.478 0.00 0.00 0.00 3.06
190 193 4.921515 GCAGAAAACGTGTACAGAGTGATA 59.078 41.667 0.00 0.00 0.00 2.15
191 194 5.164080 GCAGAAAACGTGTACAGAGTGATAC 60.164 44.000 0.00 0.00 0.00 2.24
192 195 6.150318 CAGAAAACGTGTACAGAGTGATACT 58.850 40.000 0.00 0.00 0.00 2.12
193 196 6.088217 CAGAAAACGTGTACAGAGTGATACTG 59.912 42.308 0.00 5.14 40.68 2.74
194 197 3.489180 ACGTGTACAGAGTGATACTGC 57.511 47.619 0.00 0.00 38.74 4.40
195 198 3.082548 ACGTGTACAGAGTGATACTGCT 58.917 45.455 0.00 0.00 38.74 4.24
196 199 4.259356 ACGTGTACAGAGTGATACTGCTA 58.741 43.478 0.00 0.00 38.74 3.49
197 200 4.882427 ACGTGTACAGAGTGATACTGCTAT 59.118 41.667 0.00 0.00 38.74 2.97
198 201 6.053650 ACGTGTACAGAGTGATACTGCTATA 58.946 40.000 0.00 0.00 38.74 1.31
199 202 6.711194 ACGTGTACAGAGTGATACTGCTATAT 59.289 38.462 0.00 0.00 38.74 0.86
200 203 7.228906 ACGTGTACAGAGTGATACTGCTATATT 59.771 37.037 0.00 0.00 38.74 1.28
201 204 8.718734 CGTGTACAGAGTGATACTGCTATATTA 58.281 37.037 0.00 0.00 38.74 0.98
206 209 9.429359 ACAGAGTGATACTGCTATATTATTTGC 57.571 33.333 0.00 0.00 38.74 3.68
207 210 9.650539 CAGAGTGATACTGCTATATTATTTGCT 57.349 33.333 0.00 0.00 0.00 3.91
210 213 9.593134 AGTGATACTGCTATATTATTTGCTAGC 57.407 33.333 8.10 8.10 37.65 3.42
211 214 9.593134 GTGATACTGCTATATTATTTGCTAGCT 57.407 33.333 17.23 0.00 37.92 3.32
216 219 9.429359 ACTGCTATATTATTTGCTAGCTACTTG 57.571 33.333 17.23 0.00 37.92 3.16
217 220 9.645059 CTGCTATATTATTTGCTAGCTACTTGA 57.355 33.333 17.23 0.00 37.92 3.02
218 221 9.645059 TGCTATATTATTTGCTAGCTACTTGAG 57.355 33.333 17.23 3.81 37.92 3.02
219 222 9.646427 GCTATATTATTTGCTAGCTACTTGAGT 57.354 33.333 17.23 0.00 34.98 3.41
227 230 8.928270 TTTGCTAGCTACTTGAGTAAATAGAC 57.072 34.615 17.23 5.76 0.00 2.59
228 231 7.640597 TGCTAGCTACTTGAGTAAATAGACA 57.359 36.000 17.23 7.36 0.00 3.41
229 232 7.481642 TGCTAGCTACTTGAGTAAATAGACAC 58.518 38.462 17.23 0.00 0.00 3.67
230 233 7.122204 TGCTAGCTACTTGAGTAAATAGACACA 59.878 37.037 17.23 0.00 0.00 3.72
231 234 7.974501 GCTAGCTACTTGAGTAAATAGACACAA 59.025 37.037 7.70 0.00 0.00 3.33
232 235 9.856488 CTAGCTACTTGAGTAAATAGACACAAA 57.144 33.333 0.00 0.00 30.95 2.83
233 236 8.535690 AGCTACTTGAGTAAATAGACACAAAC 57.464 34.615 0.00 0.00 30.95 2.93
234 237 7.603024 AGCTACTTGAGTAAATAGACACAAACC 59.397 37.037 0.00 0.00 30.95 3.27
235 238 7.386848 GCTACTTGAGTAAATAGACACAAACCA 59.613 37.037 0.00 0.00 30.95 3.67
236 239 9.436957 CTACTTGAGTAAATAGACACAAACCAT 57.563 33.333 0.00 0.00 30.95 3.55
237 240 8.099364 ACTTGAGTAAATAGACACAAACCATG 57.901 34.615 0.00 0.00 30.95 3.66
238 241 6.494893 TGAGTAAATAGACACAAACCATGC 57.505 37.500 0.00 0.00 0.00 4.06
239 242 6.000840 TGAGTAAATAGACACAAACCATGCA 58.999 36.000 0.00 0.00 0.00 3.96
240 243 6.149308 TGAGTAAATAGACACAAACCATGCAG 59.851 38.462 0.00 0.00 0.00 4.41
241 244 6.237901 AGTAAATAGACACAAACCATGCAGA 58.762 36.000 0.00 0.00 0.00 4.26
242 245 6.714810 AGTAAATAGACACAAACCATGCAGAA 59.285 34.615 0.00 0.00 0.00 3.02
243 246 6.403866 AAATAGACACAAACCATGCAGAAA 57.596 33.333 0.00 0.00 0.00 2.52
244 247 6.403866 AATAGACACAAACCATGCAGAAAA 57.596 33.333 0.00 0.00 0.00 2.29
245 248 4.734398 AGACACAAACCATGCAGAAAAA 57.266 36.364 0.00 0.00 0.00 1.94
268 271 8.677148 AAAAGAGAGTAAATAGACACAAAGCA 57.323 30.769 0.00 0.00 0.00 3.91
269 272 8.677148 AAAGAGAGTAAATAGACACAAAGCAA 57.323 30.769 0.00 0.00 0.00 3.91
270 273 8.677148 AAGAGAGTAAATAGACACAAAGCAAA 57.323 30.769 0.00 0.00 0.00 3.68
271 274 8.316640 AGAGAGTAAATAGACACAAAGCAAAG 57.683 34.615 0.00 0.00 0.00 2.77
272 275 6.903419 AGAGTAAATAGACACAAAGCAAAGC 58.097 36.000 0.00 0.00 0.00 3.51
273 276 6.486657 AGAGTAAATAGACACAAAGCAAAGCA 59.513 34.615 0.00 0.00 0.00 3.91
274 277 6.438763 AGTAAATAGACACAAAGCAAAGCAC 58.561 36.000 0.00 0.00 0.00 4.40
275 278 3.542712 ATAGACACAAAGCAAAGCACG 57.457 42.857 0.00 0.00 0.00 5.34
276 279 0.381801 AGACACAAAGCAAAGCACGG 59.618 50.000 0.00 0.00 0.00 4.94
277 280 1.208642 GACACAAAGCAAAGCACGGC 61.209 55.000 0.00 0.00 0.00 5.68
278 281 1.950630 CACAAAGCAAAGCACGGCC 60.951 57.895 0.00 0.00 0.00 6.13
279 282 2.730604 CAAAGCAAAGCACGGCCG 60.731 61.111 26.86 26.86 0.00 6.13
280 283 3.977244 AAAGCAAAGCACGGCCGG 61.977 61.111 31.76 19.49 0.00 6.13
285 288 4.887190 AAAGCACGGCCGGGTGTT 62.887 61.111 31.19 20.26 40.08 3.32
296 299 3.336566 GGGTGTTCCGTTCCGTTG 58.663 61.111 0.00 0.00 33.83 4.10
297 300 1.524393 GGGTGTTCCGTTCCGTTGT 60.524 57.895 0.00 0.00 33.83 3.32
298 301 1.501337 GGGTGTTCCGTTCCGTTGTC 61.501 60.000 0.00 0.00 33.83 3.18
299 302 0.810823 GGTGTTCCGTTCCGTTGTCA 60.811 55.000 0.00 0.00 0.00 3.58
300 303 0.580104 GTGTTCCGTTCCGTTGTCAG 59.420 55.000 0.00 0.00 0.00 3.51
301 304 0.531090 TGTTCCGTTCCGTTGTCAGG 60.531 55.000 0.00 0.00 0.00 3.86
302 305 1.595929 TTCCGTTCCGTTGTCAGGC 60.596 57.895 0.00 0.00 0.00 4.85
303 306 2.280524 CCGTTCCGTTGTCAGGCA 60.281 61.111 0.00 0.00 0.00 4.75
304 307 1.890041 CCGTTCCGTTGTCAGGCAA 60.890 57.895 0.00 0.00 34.16 4.52
318 321 3.115556 GCAACGTGCCAACCTCAA 58.884 55.556 0.00 0.00 37.42 3.02
319 322 1.659794 GCAACGTGCCAACCTCAAT 59.340 52.632 0.00 0.00 37.42 2.57
320 323 0.031994 GCAACGTGCCAACCTCAATT 59.968 50.000 0.00 0.00 37.42 2.32
321 324 1.537990 GCAACGTGCCAACCTCAATTT 60.538 47.619 0.00 0.00 37.42 1.82
322 325 2.820330 CAACGTGCCAACCTCAATTTT 58.180 42.857 0.00 0.00 0.00 1.82
323 326 3.797184 GCAACGTGCCAACCTCAATTTTA 60.797 43.478 0.00 0.00 37.42 1.52
324 327 3.636282 ACGTGCCAACCTCAATTTTAC 57.364 42.857 0.00 0.00 0.00 2.01
325 328 3.219281 ACGTGCCAACCTCAATTTTACT 58.781 40.909 0.00 0.00 0.00 2.24
326 329 3.634910 ACGTGCCAACCTCAATTTTACTT 59.365 39.130 0.00 0.00 0.00 2.24
327 330 4.098807 ACGTGCCAACCTCAATTTTACTTT 59.901 37.500 0.00 0.00 0.00 2.66
328 331 5.047188 CGTGCCAACCTCAATTTTACTTTT 58.953 37.500 0.00 0.00 0.00 2.27
329 332 5.522097 CGTGCCAACCTCAATTTTACTTTTT 59.478 36.000 0.00 0.00 0.00 1.94
330 333 6.509358 CGTGCCAACCTCAATTTTACTTTTTG 60.509 38.462 0.00 0.00 0.00 2.44
331 334 5.295540 TGCCAACCTCAATTTTACTTTTTGC 59.704 36.000 0.00 0.00 0.00 3.68
332 335 5.295540 GCCAACCTCAATTTTACTTTTTGCA 59.704 36.000 0.00 0.00 0.00 4.08
333 336 6.183360 GCCAACCTCAATTTTACTTTTTGCAA 60.183 34.615 0.00 0.00 0.00 4.08
334 337 7.186128 CCAACCTCAATTTTACTTTTTGCAAC 58.814 34.615 0.00 0.00 0.00 4.17
335 338 7.148340 CCAACCTCAATTTTACTTTTTGCAACA 60.148 33.333 0.00 0.00 0.00 3.33
336 339 8.397148 CAACCTCAATTTTACTTTTTGCAACAT 58.603 29.630 0.00 0.00 0.00 2.71
337 340 8.504812 ACCTCAATTTTACTTTTTGCAACATT 57.495 26.923 0.00 0.00 0.00 2.71
338 341 8.955388 ACCTCAATTTTACTTTTTGCAACATTT 58.045 25.926 0.00 0.00 0.00 2.32
347 350 9.646427 TTACTTTTTGCAACATTTACTCAAAGT 57.354 25.926 18.67 18.67 36.28 2.66
348 351 8.185003 ACTTTTTGCAACATTTACTCAAAGTC 57.815 30.769 12.16 0.00 28.12 3.01
349 352 7.277760 ACTTTTTGCAACATTTACTCAAAGTCC 59.722 33.333 12.16 0.00 28.12 3.85
350 353 5.843673 TTGCAACATTTACTCAAAGTCCA 57.156 34.783 0.00 0.00 0.00 4.02
351 354 5.437289 TGCAACATTTACTCAAAGTCCAG 57.563 39.130 0.00 0.00 0.00 3.86
352 355 4.278170 TGCAACATTTACTCAAAGTCCAGG 59.722 41.667 0.00 0.00 0.00 4.45
353 356 4.321230 GCAACATTTACTCAAAGTCCAGGG 60.321 45.833 0.00 0.00 0.00 4.45
354 357 4.034285 ACATTTACTCAAAGTCCAGGGG 57.966 45.455 0.00 0.00 0.00 4.79
355 358 3.397955 ACATTTACTCAAAGTCCAGGGGT 59.602 43.478 0.00 0.00 0.00 4.95
356 359 3.782656 TTTACTCAAAGTCCAGGGGTC 57.217 47.619 0.00 0.00 0.00 4.46
357 360 1.652947 TACTCAAAGTCCAGGGGTCC 58.347 55.000 0.00 0.00 0.00 4.46
358 361 1.296715 CTCAAAGTCCAGGGGTCCG 59.703 63.158 0.00 0.00 0.00 4.79
359 362 1.460689 TCAAAGTCCAGGGGTCCGT 60.461 57.895 0.00 0.00 0.00 4.69
360 363 0.178926 TCAAAGTCCAGGGGTCCGTA 60.179 55.000 0.00 0.00 0.00 4.02
361 364 0.688487 CAAAGTCCAGGGGTCCGTAA 59.312 55.000 0.00 0.00 0.00 3.18
362 365 1.072648 CAAAGTCCAGGGGTCCGTAAA 59.927 52.381 0.00 0.00 0.00 2.01
363 366 1.437397 AAGTCCAGGGGTCCGTAAAA 58.563 50.000 0.00 0.00 0.00 1.52
364 367 1.437397 AGTCCAGGGGTCCGTAAAAA 58.563 50.000 0.00 0.00 0.00 1.94
378 381 2.421314 AAAAACCAAGCCCGCAGC 59.579 55.556 0.00 0.00 44.25 5.25
394 397 4.030452 GCTCACAGCGCCCACAAC 62.030 66.667 2.29 0.00 0.00 3.32
395 398 2.591429 CTCACAGCGCCCACAACA 60.591 61.111 2.29 0.00 0.00 3.33
396 399 1.968017 CTCACAGCGCCCACAACAT 60.968 57.895 2.29 0.00 0.00 2.71
397 400 1.518056 CTCACAGCGCCCACAACATT 61.518 55.000 2.29 0.00 0.00 2.71
398 401 1.372004 CACAGCGCCCACAACATTG 60.372 57.895 2.29 0.00 0.00 2.82
399 402 2.259204 CAGCGCCCACAACATTGG 59.741 61.111 2.29 0.00 36.26 3.16
400 403 3.683937 AGCGCCCACAACATTGGC 61.684 61.111 2.29 0.00 41.85 4.52
401 404 3.988525 GCGCCCACAACATTGGCA 61.989 61.111 0.00 0.00 45.63 4.92
402 405 2.259204 CGCCCACAACATTGGCAG 59.741 61.111 0.00 0.00 45.63 4.85
403 406 2.563798 CGCCCACAACATTGGCAGT 61.564 57.895 0.00 0.00 45.63 4.40
404 407 1.005867 GCCCACAACATTGGCAGTG 60.006 57.895 8.60 8.60 44.70 3.66
405 408 1.462731 GCCCACAACATTGGCAGTGA 61.463 55.000 17.47 0.00 44.70 3.41
406 409 0.314935 CCCACAACATTGGCAGTGAC 59.685 55.000 17.47 0.00 35.00 3.67
407 410 1.031235 CCACAACATTGGCAGTGACA 58.969 50.000 17.47 0.00 33.99 3.58
408 411 1.269206 CCACAACATTGGCAGTGACAC 60.269 52.381 17.47 0.00 33.99 3.67
409 412 0.662619 ACAACATTGGCAGTGACACG 59.337 50.000 17.47 0.00 0.00 4.49
410 413 0.661187 CAACATTGGCAGTGACACGC 60.661 55.000 17.47 12.16 0.00 5.34
425 428 2.266372 CGCCACACGGGTAATGGA 59.734 61.111 0.00 0.00 39.65 3.41
426 429 1.153249 CGCCACACGGGTAATGGAT 60.153 57.895 0.00 0.00 39.65 3.41
427 430 0.105224 CGCCACACGGGTAATGGATA 59.895 55.000 0.00 0.00 39.65 2.59
428 431 1.589803 GCCACACGGGTAATGGATAC 58.410 55.000 0.00 0.00 39.65 2.24
441 444 1.869774 TGGATACATCAGCATGCGTC 58.130 50.000 13.01 3.31 46.17 5.19
442 445 1.413812 TGGATACATCAGCATGCGTCT 59.586 47.619 13.01 0.00 46.17 4.18
443 446 2.627699 TGGATACATCAGCATGCGTCTA 59.372 45.455 13.01 0.00 46.17 2.59
444 447 3.069443 TGGATACATCAGCATGCGTCTAA 59.931 43.478 13.01 0.00 46.17 2.10
445 448 4.058124 GGATACATCAGCATGCGTCTAAA 58.942 43.478 13.01 0.00 34.76 1.85
446 449 4.151335 GGATACATCAGCATGCGTCTAAAG 59.849 45.833 13.01 2.62 34.76 1.85
447 450 2.283298 ACATCAGCATGCGTCTAAAGG 58.717 47.619 13.01 0.56 34.76 3.11
448 451 1.003116 CATCAGCATGCGTCTAAAGGC 60.003 52.381 13.01 0.00 34.76 4.35
453 456 2.738480 TGCGTCTAAAGGCACCGT 59.262 55.556 0.00 0.00 41.12 4.83
454 457 1.965990 TGCGTCTAAAGGCACCGTA 59.034 52.632 0.00 0.00 41.12 4.02
455 458 0.533491 TGCGTCTAAAGGCACCGTAT 59.467 50.000 0.00 0.00 41.12 3.06
456 459 1.066716 TGCGTCTAAAGGCACCGTATT 60.067 47.619 0.00 0.00 41.12 1.89
457 460 2.004733 GCGTCTAAAGGCACCGTATTT 58.995 47.619 0.00 0.00 36.30 1.40
458 461 2.222953 GCGTCTAAAGGCACCGTATTTG 60.223 50.000 0.00 0.00 36.30 2.32
459 462 3.255725 CGTCTAAAGGCACCGTATTTGA 58.744 45.455 0.00 0.00 0.00 2.69
460 463 3.680937 CGTCTAAAGGCACCGTATTTGAA 59.319 43.478 0.00 0.00 0.00 2.69
461 464 4.435121 CGTCTAAAGGCACCGTATTTGAAC 60.435 45.833 0.00 0.00 0.00 3.18
462 465 2.981400 AAAGGCACCGTATTTGAACG 57.019 45.000 0.00 0.00 42.49 3.95
463 466 1.886886 AAGGCACCGTATTTGAACGT 58.113 45.000 0.00 0.00 41.27 3.99
464 467 1.435577 AGGCACCGTATTTGAACGTC 58.564 50.000 0.00 0.00 41.27 4.34
465 468 0.445043 GGCACCGTATTTGAACGTCC 59.555 55.000 0.00 0.00 41.27 4.79
466 469 0.094046 GCACCGTATTTGAACGTCCG 59.906 55.000 0.00 0.00 41.27 4.79
467 470 0.717224 CACCGTATTTGAACGTCCGG 59.283 55.000 0.00 0.00 41.27 5.14
468 471 0.602562 ACCGTATTTGAACGTCCGGA 59.397 50.000 0.00 0.00 41.27 5.14
469 472 0.994263 CCGTATTTGAACGTCCGGAC 59.006 55.000 25.28 25.28 41.27 4.79
479 482 4.753541 GTCCGGACGAGTTACGAC 57.246 61.111 20.85 0.00 45.77 4.34
480 483 1.868997 GTCCGGACGAGTTACGACA 59.131 57.895 20.85 0.00 45.77 4.35
481 484 0.453449 GTCCGGACGAGTTACGACAC 60.453 60.000 20.85 0.00 45.77 3.67
482 485 0.603707 TCCGGACGAGTTACGACACT 60.604 55.000 0.00 0.00 45.77 3.55
483 486 1.078709 CCGGACGAGTTACGACACTA 58.921 55.000 0.00 0.00 45.77 2.74
484 487 1.667724 CCGGACGAGTTACGACACTAT 59.332 52.381 0.00 0.00 45.77 2.12
485 488 2.096496 CCGGACGAGTTACGACACTATT 59.904 50.000 0.00 0.00 45.77 1.73
486 489 3.426695 CCGGACGAGTTACGACACTATTT 60.427 47.826 0.00 0.00 45.77 1.40
487 490 4.161333 CGGACGAGTTACGACACTATTTT 58.839 43.478 0.00 0.00 45.77 1.82
488 491 4.618489 CGGACGAGTTACGACACTATTTTT 59.382 41.667 0.00 0.00 45.77 1.94
489 492 5.794945 CGGACGAGTTACGACACTATTTTTA 59.205 40.000 0.00 0.00 45.77 1.52
490 493 6.470235 CGGACGAGTTACGACACTATTTTTAT 59.530 38.462 0.00 0.00 45.77 1.40
491 494 7.512579 CGGACGAGTTACGACACTATTTTTATG 60.513 40.741 0.00 0.00 45.77 1.90
492 495 7.274250 GGACGAGTTACGACACTATTTTTATGT 59.726 37.037 0.00 0.00 45.77 2.29
493 496 9.277565 GACGAGTTACGACACTATTTTTATGTA 57.722 33.333 0.00 0.00 45.77 2.29
494 497 9.793252 ACGAGTTACGACACTATTTTTATGTAT 57.207 29.630 0.00 0.00 45.77 2.29
515 518 9.995003 ATGTATTTTTCAAGTTTAGGCATCAAA 57.005 25.926 0.00 0.00 0.00 2.69
516 519 9.255304 TGTATTTTTCAAGTTTAGGCATCAAAC 57.745 29.630 0.00 0.00 36.37 2.93
517 520 9.476202 GTATTTTTCAAGTTTAGGCATCAAACT 57.524 29.630 6.19 6.19 45.73 2.66
518 521 7.769272 TTTTTCAAGTTTAGGCATCAAACTG 57.231 32.000 11.15 7.24 43.62 3.16
519 522 6.707440 TTTCAAGTTTAGGCATCAAACTGA 57.293 33.333 11.15 8.82 43.62 3.41
520 523 5.689383 TCAAGTTTAGGCATCAAACTGAC 57.311 39.130 11.15 0.00 43.62 3.51
521 524 4.518970 TCAAGTTTAGGCATCAAACTGACC 59.481 41.667 11.15 0.00 43.62 4.02
522 525 3.074412 AGTTTAGGCATCAAACTGACCG 58.926 45.455 10.03 0.00 42.98 4.79
523 526 3.071479 GTTTAGGCATCAAACTGACCGA 58.929 45.455 0.00 0.00 33.91 4.69
524 527 2.672961 TAGGCATCAAACTGACCGAG 57.327 50.000 0.00 0.00 0.00 4.63
525 528 0.674895 AGGCATCAAACTGACCGAGC 60.675 55.000 0.00 0.00 0.00 5.03
526 529 0.674895 GGCATCAAACTGACCGAGCT 60.675 55.000 0.00 0.00 0.00 4.09
527 530 0.445436 GCATCAAACTGACCGAGCTG 59.555 55.000 0.00 0.00 0.00 4.24
528 531 1.941209 GCATCAAACTGACCGAGCTGA 60.941 52.381 0.00 0.00 0.00 4.26
529 532 2.416747 CATCAAACTGACCGAGCTGAA 58.583 47.619 0.00 0.00 0.00 3.02
530 533 1.865865 TCAAACTGACCGAGCTGAAC 58.134 50.000 0.00 0.00 0.00 3.18
531 534 1.138069 TCAAACTGACCGAGCTGAACA 59.862 47.619 0.00 0.00 0.00 3.18
532 535 1.939934 CAAACTGACCGAGCTGAACAA 59.060 47.619 0.00 0.00 0.00 2.83
533 536 1.871080 AACTGACCGAGCTGAACAAG 58.129 50.000 0.00 0.00 0.00 3.16
534 537 0.753262 ACTGACCGAGCTGAACAAGT 59.247 50.000 0.00 0.00 0.00 3.16
535 538 1.139058 ACTGACCGAGCTGAACAAGTT 59.861 47.619 0.00 0.00 0.00 2.66
536 539 2.364324 ACTGACCGAGCTGAACAAGTTA 59.636 45.455 0.00 0.00 0.00 2.24
537 540 3.181469 ACTGACCGAGCTGAACAAGTTAA 60.181 43.478 0.00 0.00 0.00 2.01
538 541 3.390135 TGACCGAGCTGAACAAGTTAAG 58.610 45.455 0.00 0.00 0.00 1.85
539 542 2.737252 GACCGAGCTGAACAAGTTAAGG 59.263 50.000 0.00 0.00 0.00 2.69
540 543 2.104281 ACCGAGCTGAACAAGTTAAGGT 59.896 45.455 1.74 1.74 34.63 3.50
541 544 3.322828 ACCGAGCTGAACAAGTTAAGGTA 59.677 43.478 2.13 0.00 32.22 3.08
542 545 3.678548 CCGAGCTGAACAAGTTAAGGTAC 59.321 47.826 2.13 0.00 32.22 3.34
543 546 3.678548 CGAGCTGAACAAGTTAAGGTACC 59.321 47.826 2.73 2.73 32.22 3.34
544 547 4.001652 GAGCTGAACAAGTTAAGGTACCC 58.998 47.826 8.74 0.00 32.22 3.69
545 548 3.393278 AGCTGAACAAGTTAAGGTACCCA 59.607 43.478 8.74 0.00 30.37 4.51
546 549 4.042934 AGCTGAACAAGTTAAGGTACCCAT 59.957 41.667 8.74 0.00 30.37 4.00
547 550 5.249852 AGCTGAACAAGTTAAGGTACCCATA 59.750 40.000 8.74 0.00 30.37 2.74
548 551 5.585047 GCTGAACAAGTTAAGGTACCCATAG 59.415 44.000 8.74 0.00 0.00 2.23
549 552 6.691255 TGAACAAGTTAAGGTACCCATAGT 57.309 37.500 8.74 0.00 0.00 2.12
550 553 6.469410 TGAACAAGTTAAGGTACCCATAGTG 58.531 40.000 8.74 2.93 0.00 2.74
551 554 6.043474 TGAACAAGTTAAGGTACCCATAGTGT 59.957 38.462 8.74 3.60 0.00 3.55
552 555 7.235193 TGAACAAGTTAAGGTACCCATAGTGTA 59.765 37.037 8.74 0.00 0.00 2.90
553 556 7.744678 ACAAGTTAAGGTACCCATAGTGTAT 57.255 36.000 8.74 0.00 0.00 2.29
554 557 8.154420 ACAAGTTAAGGTACCCATAGTGTATT 57.846 34.615 8.74 0.00 0.00 1.89
555 558 8.608598 ACAAGTTAAGGTACCCATAGTGTATTT 58.391 33.333 8.74 0.00 0.00 1.40
617 621 4.003648 AGTTTGATGTGACCGAGAAATCC 58.996 43.478 0.00 0.00 0.00 3.01
647 651 3.522731 CAGAGCTCCGAGGGTCCG 61.523 72.222 10.93 0.00 34.64 4.79
666 671 0.326264 GAAGACTGGTGGCAGGTGAT 59.674 55.000 0.00 0.00 0.00 3.06
668 673 0.837691 AGACTGGTGGCAGGTGATCA 60.838 55.000 0.00 0.00 0.00 2.92
672 677 1.448540 GGTGGCAGGTGATCACTCG 60.449 63.158 24.50 16.48 0.00 4.18
702 707 5.835113 ATGTTTGTTAGCTGTTGTTCAGT 57.165 34.783 0.00 0.00 45.23 3.41
729 734 3.776969 TCTGTTTCCCTGATGCTGATAGT 59.223 43.478 0.00 0.00 0.00 2.12
777 782 0.681733 GCAGGTCACCACTCAAGAGA 59.318 55.000 3.73 0.00 0.00 3.10
791 800 7.345653 ACCACTCAAGAGATCTTATGGTCATTA 59.654 37.037 14.88 0.00 39.60 1.90
843 852 3.814268 CATTTCAGCCGTGCCCCG 61.814 66.667 0.00 0.00 0.00 5.73
986 995 0.040067 GGCAGCTTGTTTTCCAGTCG 60.040 55.000 0.00 0.00 0.00 4.18
987 996 0.663153 GCAGCTTGTTTTCCAGTCGT 59.337 50.000 0.00 0.00 0.00 4.34
1017 1026 8.218338 ACTTCAATATGCTTCTTCACCTATTG 57.782 34.615 0.00 0.00 0.00 1.90
1107 1116 1.134175 CAAGGACTTGTTTGCGGTGTT 59.866 47.619 3.93 0.00 35.92 3.32
1169 1178 2.619074 GCTTCTTCCAACCAGGCAGTAT 60.619 50.000 0.00 0.00 37.29 2.12
1284 1293 0.727398 CACAGCCCGCTTTAGTTAGC 59.273 55.000 0.00 0.00 37.80 3.09
1336 1345 6.126796 TGTCATCTTAGATCAAGCCACCAATA 60.127 38.462 0.00 0.00 33.94 1.90
1337 1346 6.426328 GTCATCTTAGATCAAGCCACCAATAG 59.574 42.308 0.00 0.00 33.94 1.73
1576 1585 1.800315 CCAGCTCGTGGTCGTTACG 60.800 63.158 0.00 0.00 42.17 3.18
1577 1586 1.081641 CAGCTCGTGGTCGTTACGT 60.082 57.895 4.24 0.00 41.91 3.57
1627 1636 4.695455 TCCTTAAGCTTTTGAACTCATCCG 59.305 41.667 3.20 0.00 0.00 4.18
1830 1839 6.012508 TGAAGACTTTAATCTGGGATGAGGTT 60.013 38.462 0.00 0.00 0.00 3.50
1996 2005 3.290710 TGGGAGCAAAATGATAGAAGCC 58.709 45.455 0.00 0.00 0.00 4.35
2058 2068 0.533032 GGAGTACTGCAGGAGTGACC 59.467 60.000 19.93 7.24 35.96 4.02
2070 2080 4.502259 GCAGGAGTGACCGATGAATTCTAT 60.502 45.833 7.05 0.00 44.74 1.98
2112 2122 2.490903 GCCTCAGAATGCTGACAACATT 59.509 45.455 0.00 3.74 45.88 2.71
2220 2230 3.094572 CTCCATTTGGCATGAGGAACTT 58.905 45.455 0.00 0.00 34.35 2.66
2323 2336 2.297701 TGCAAACTCAGAAACCTGACC 58.702 47.619 0.00 0.00 35.88 4.02
2416 2429 5.269505 AGTTCTTCTACTGATGATTCGGG 57.730 43.478 0.00 0.00 32.05 5.14
3069 3190 5.028375 GCAAAAGTCGATGTTTATGGCTAC 58.972 41.667 0.00 0.00 0.00 3.58
3129 3250 9.121517 CAGAATTCATTTGAACAATACACTGTC 57.878 33.333 8.44 0.00 36.80 3.51
3143 3264 0.468226 ACTGTCGGTGGTGATTGTGT 59.532 50.000 0.00 0.00 0.00 3.72
3219 3340 6.855763 AGCTTGGTGGATGAAAAATTATCA 57.144 33.333 0.00 0.00 0.00 2.15
3225 3346 6.152661 TGGTGGATGAAAAATTATCAGGTGAC 59.847 38.462 1.06 0.00 0.00 3.67
3500 3627 3.064820 CCTCCGGTCCAAATTAATTGACG 59.935 47.826 0.00 2.93 41.85 4.35
3515 3642 7.949903 TTAATTGACGCAGACTTAGTACAAA 57.050 32.000 0.00 0.00 0.00 2.83
3574 3701 8.190326 TGAAACATAGTAAGAAAGTCTGAGGA 57.810 34.615 0.00 0.00 0.00 3.71
3643 3770 3.154710 CTGTAGTCTGTACCAGGTGTGA 58.845 50.000 0.76 0.00 31.51 3.58
3676 3803 7.555195 TCTGTCCAATCGTTCTAATCTACAGTA 59.445 37.037 0.00 0.00 33.92 2.74
3741 3915 2.028130 TGATTTTGCTTCGTGGTGGTT 58.972 42.857 0.00 0.00 0.00 3.67
3795 3973 4.039004 TGTGTTATCATTTGTTGCCTTGCT 59.961 37.500 0.00 0.00 0.00 3.91
3945 4138 0.400213 TGGTGGTGTAGGCCTTTCTG 59.600 55.000 12.58 0.00 0.00 3.02
3955 4148 1.494721 AGGCCTTTCTGTTCTGTTCCA 59.505 47.619 0.00 0.00 0.00 3.53
3956 4149 2.108952 AGGCCTTTCTGTTCTGTTCCAT 59.891 45.455 0.00 0.00 0.00 3.41
3957 4150 2.893489 GGCCTTTCTGTTCTGTTCCATT 59.107 45.455 0.00 0.00 0.00 3.16
3958 4151 3.057245 GGCCTTTCTGTTCTGTTCCATTC 60.057 47.826 0.00 0.00 0.00 2.67
3959 4152 3.057245 GCCTTTCTGTTCTGTTCCATTCC 60.057 47.826 0.00 0.00 0.00 3.01
3960 4153 4.144297 CCTTTCTGTTCTGTTCCATTCCA 58.856 43.478 0.00 0.00 0.00 3.53
3983 4176 1.412343 ACCATTGCCCAACACAGAAAC 59.588 47.619 0.00 0.00 0.00 2.78
3990 4183 2.413837 CCCAACACAGAAACTACCGAG 58.586 52.381 0.00 0.00 0.00 4.63
4125 4341 9.999660 TTACATACAACTTTAGGTACACATTCA 57.000 29.630 0.00 0.00 0.00 2.57
4127 4343 9.515226 ACATACAACTTTAGGTACACATTCATT 57.485 29.630 0.00 0.00 0.00 2.57
4128 4344 9.988350 CATACAACTTTAGGTACACATTCATTC 57.012 33.333 0.00 0.00 0.00 2.67
4129 4345 7.129109 ACAACTTTAGGTACACATTCATTCG 57.871 36.000 0.00 0.00 0.00 3.34
4130 4346 5.796350 ACTTTAGGTACACATTCATTCGC 57.204 39.130 0.00 0.00 0.00 4.70
4131 4347 5.242434 ACTTTAGGTACACATTCATTCGCA 58.758 37.500 0.00 0.00 0.00 5.10
4132 4348 5.703592 ACTTTAGGTACACATTCATTCGCAA 59.296 36.000 0.00 0.00 0.00 4.85
4133 4349 6.205853 ACTTTAGGTACACATTCATTCGCAAA 59.794 34.615 0.00 0.00 0.00 3.68
4134 4350 6.561737 TTAGGTACACATTCATTCGCAAAA 57.438 33.333 0.00 0.00 0.00 2.44
4135 4351 5.446143 AGGTACACATTCATTCGCAAAAA 57.554 34.783 0.00 0.00 0.00 1.94
4240 5707 1.537397 ACAGGCTGCTTCTGAGGGA 60.537 57.895 15.89 0.00 36.22 4.20
4249 5716 3.359033 TGCTTCTGAGGGATTTTGGATG 58.641 45.455 0.00 0.00 0.00 3.51
4275 5742 5.222079 TGGGCCAAAGAAAAATAAGGAAC 57.778 39.130 2.13 0.00 0.00 3.62
4319 8581 6.531021 ACGTTCAGTCCCTAATAAATATGGG 58.469 40.000 0.00 0.00 40.95 4.00
4320 8582 5.411669 CGTTCAGTCCCTAATAAATATGGGC 59.588 44.000 0.00 0.00 39.49 5.36
4321 8583 6.303839 GTTCAGTCCCTAATAAATATGGGCA 58.696 40.000 0.00 0.00 39.49 5.36
4322 8584 6.718593 TCAGTCCCTAATAAATATGGGCAT 57.281 37.500 0.00 0.00 39.49 4.40
4323 8585 6.721318 TCAGTCCCTAATAAATATGGGCATC 58.279 40.000 0.00 0.00 39.49 3.91
4325 8587 7.036644 TCAGTCCCTAATAAATATGGGCATCAT 60.037 37.037 0.00 0.00 39.49 2.45
4326 8588 7.616935 CAGTCCCTAATAAATATGGGCATCATT 59.383 37.037 0.00 0.00 39.49 2.57
4327 8589 8.845793 AGTCCCTAATAAATATGGGCATCATTA 58.154 33.333 0.00 0.00 39.49 1.90
4328 8590 8.903820 GTCCCTAATAAATATGGGCATCATTAC 58.096 37.037 0.00 0.00 39.49 1.89
4329 8591 8.619281 TCCCTAATAAATATGGGCATCATTACA 58.381 33.333 0.00 0.00 39.49 2.41
4330 8592 9.253832 CCCTAATAAATATGGGCATCATTACAA 57.746 33.333 0.00 0.00 37.30 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 109 2.955660 TCCGAGCCTGTTTTGTTTTCAT 59.044 40.909 0.00 0.00 0.00 2.57
107 110 2.370349 TCCGAGCCTGTTTTGTTTTCA 58.630 42.857 0.00 0.00 0.00 2.69
108 111 3.430333 TTCCGAGCCTGTTTTGTTTTC 57.570 42.857 0.00 0.00 0.00 2.29
109 112 3.878160 TTTCCGAGCCTGTTTTGTTTT 57.122 38.095 0.00 0.00 0.00 2.43
110 113 3.878160 TTTTCCGAGCCTGTTTTGTTT 57.122 38.095 0.00 0.00 0.00 2.83
111 114 3.430236 CCTTTTTCCGAGCCTGTTTTGTT 60.430 43.478 0.00 0.00 0.00 2.83
112 115 2.100749 CCTTTTTCCGAGCCTGTTTTGT 59.899 45.455 0.00 0.00 0.00 2.83
113 116 2.360801 TCCTTTTTCCGAGCCTGTTTTG 59.639 45.455 0.00 0.00 0.00 2.44
114 117 2.661718 TCCTTTTTCCGAGCCTGTTTT 58.338 42.857 0.00 0.00 0.00 2.43
115 118 2.358322 TCCTTTTTCCGAGCCTGTTT 57.642 45.000 0.00 0.00 0.00 2.83
116 119 2.586648 ATCCTTTTTCCGAGCCTGTT 57.413 45.000 0.00 0.00 0.00 3.16
117 120 2.092914 CCTATCCTTTTTCCGAGCCTGT 60.093 50.000 0.00 0.00 0.00 4.00
118 121 2.170607 TCCTATCCTTTTTCCGAGCCTG 59.829 50.000 0.00 0.00 0.00 4.85
119 122 2.478292 TCCTATCCTTTTTCCGAGCCT 58.522 47.619 0.00 0.00 0.00 4.58
120 123 2.943690 GTTCCTATCCTTTTTCCGAGCC 59.056 50.000 0.00 0.00 0.00 4.70
121 124 3.875125 AGTTCCTATCCTTTTTCCGAGC 58.125 45.455 0.00 0.00 0.00 5.03
122 125 5.488341 TCAAGTTCCTATCCTTTTTCCGAG 58.512 41.667 0.00 0.00 0.00 4.63
123 126 5.247564 TCTCAAGTTCCTATCCTTTTTCCGA 59.752 40.000 0.00 0.00 0.00 4.55
124 127 5.488341 TCTCAAGTTCCTATCCTTTTTCCG 58.512 41.667 0.00 0.00 0.00 4.30
125 128 7.761038 TTTCTCAAGTTCCTATCCTTTTTCC 57.239 36.000 0.00 0.00 0.00 3.13
148 151 5.859495 TCTGCGGGTTTCCATTTTATTTTT 58.141 33.333 0.00 0.00 0.00 1.94
149 152 5.476091 TCTGCGGGTTTCCATTTTATTTT 57.524 34.783 0.00 0.00 0.00 1.82
150 153 5.476091 TTCTGCGGGTTTCCATTTTATTT 57.524 34.783 0.00 0.00 0.00 1.40
151 154 5.476091 TTTCTGCGGGTTTCCATTTTATT 57.524 34.783 0.00 0.00 0.00 1.40
152 155 5.234752 GTTTTCTGCGGGTTTCCATTTTAT 58.765 37.500 0.00 0.00 0.00 1.40
153 156 4.623002 GTTTTCTGCGGGTTTCCATTTTA 58.377 39.130 0.00 0.00 0.00 1.52
154 157 3.462982 GTTTTCTGCGGGTTTCCATTTT 58.537 40.909 0.00 0.00 0.00 1.82
155 158 2.544903 CGTTTTCTGCGGGTTTCCATTT 60.545 45.455 0.00 0.00 0.00 2.32
156 159 1.000717 CGTTTTCTGCGGGTTTCCATT 60.001 47.619 0.00 0.00 0.00 3.16
157 160 0.596082 CGTTTTCTGCGGGTTTCCAT 59.404 50.000 0.00 0.00 0.00 3.41
158 161 0.748729 ACGTTTTCTGCGGGTTTCCA 60.749 50.000 0.00 0.00 0.00 3.53
159 162 0.317519 CACGTTTTCTGCGGGTTTCC 60.318 55.000 0.00 0.00 0.00 3.13
160 163 0.379316 ACACGTTTTCTGCGGGTTTC 59.621 50.000 0.00 0.00 44.12 2.78
161 164 1.331447 GTACACGTTTTCTGCGGGTTT 59.669 47.619 0.00 0.00 44.12 3.27
162 165 0.939419 GTACACGTTTTCTGCGGGTT 59.061 50.000 0.00 0.00 44.12 4.11
164 167 0.511221 CTGTACACGTTTTCTGCGGG 59.489 55.000 0.00 0.00 38.90 6.13
165 168 1.455786 CTCTGTACACGTTTTCTGCGG 59.544 52.381 0.00 0.00 0.00 5.69
166 169 2.097396 CACTCTGTACACGTTTTCTGCG 60.097 50.000 0.00 0.00 0.00 5.18
167 170 3.120792 TCACTCTGTACACGTTTTCTGC 58.879 45.455 0.00 0.00 0.00 4.26
168 171 6.088217 CAGTATCACTCTGTACACGTTTTCTG 59.912 42.308 0.00 0.00 0.00 3.02
169 172 6.150318 CAGTATCACTCTGTACACGTTTTCT 58.850 40.000 0.00 0.00 0.00 2.52
170 173 5.164080 GCAGTATCACTCTGTACACGTTTTC 60.164 44.000 0.00 0.00 35.60 2.29
171 174 4.684703 GCAGTATCACTCTGTACACGTTTT 59.315 41.667 0.00 0.00 35.60 2.43
172 175 4.022242 AGCAGTATCACTCTGTACACGTTT 60.022 41.667 0.00 0.00 35.60 3.60
173 176 3.506455 AGCAGTATCACTCTGTACACGTT 59.494 43.478 0.00 0.00 35.60 3.99
174 177 3.082548 AGCAGTATCACTCTGTACACGT 58.917 45.455 0.00 0.00 35.60 4.49
175 178 3.766676 AGCAGTATCACTCTGTACACG 57.233 47.619 0.00 0.00 35.60 4.49
180 183 9.429359 GCAAATAATATAGCAGTATCACTCTGT 57.571 33.333 0.00 0.00 35.60 3.41
181 184 9.650539 AGCAAATAATATAGCAGTATCACTCTG 57.349 33.333 0.00 0.00 36.18 3.35
184 187 9.593134 GCTAGCAAATAATATAGCAGTATCACT 57.407 33.333 10.63 0.00 40.27 3.41
185 188 9.593134 AGCTAGCAAATAATATAGCAGTATCAC 57.407 33.333 18.83 0.00 42.45 3.06
190 193 9.429359 CAAGTAGCTAGCAAATAATATAGCAGT 57.571 33.333 18.83 0.00 42.45 4.40
191 194 9.645059 TCAAGTAGCTAGCAAATAATATAGCAG 57.355 33.333 18.83 0.00 42.45 4.24
192 195 9.645059 CTCAAGTAGCTAGCAAATAATATAGCA 57.355 33.333 18.83 0.00 42.45 3.49
193 196 9.646427 ACTCAAGTAGCTAGCAAATAATATAGC 57.354 33.333 18.83 0.00 40.74 2.97
201 204 9.535878 GTCTATTTACTCAAGTAGCTAGCAAAT 57.464 33.333 18.83 12.44 0.00 2.32
202 205 8.528643 TGTCTATTTACTCAAGTAGCTAGCAAA 58.471 33.333 18.83 5.52 0.00 3.68
203 206 7.974501 GTGTCTATTTACTCAAGTAGCTAGCAA 59.025 37.037 18.83 0.00 0.00 3.91
204 207 7.122204 TGTGTCTATTTACTCAAGTAGCTAGCA 59.878 37.037 18.83 0.00 0.00 3.49
205 208 7.481642 TGTGTCTATTTACTCAAGTAGCTAGC 58.518 38.462 6.62 6.62 0.00 3.42
206 209 9.856488 TTTGTGTCTATTTACTCAAGTAGCTAG 57.144 33.333 0.00 0.00 35.14 3.42
207 210 9.635520 GTTTGTGTCTATTTACTCAAGTAGCTA 57.364 33.333 0.00 0.00 35.14 3.32
208 211 7.603024 GGTTTGTGTCTATTTACTCAAGTAGCT 59.397 37.037 0.00 0.00 35.14 3.32
209 212 7.386848 TGGTTTGTGTCTATTTACTCAAGTAGC 59.613 37.037 0.00 0.00 35.14 3.58
210 213 8.827177 TGGTTTGTGTCTATTTACTCAAGTAG 57.173 34.615 0.00 0.00 35.14 2.57
211 214 9.214957 CATGGTTTGTGTCTATTTACTCAAGTA 57.785 33.333 0.00 0.00 35.14 2.24
212 215 7.308589 GCATGGTTTGTGTCTATTTACTCAAGT 60.309 37.037 0.00 0.00 35.14 3.16
213 216 7.023575 GCATGGTTTGTGTCTATTTACTCAAG 58.976 38.462 0.00 0.00 35.14 3.02
214 217 6.488344 TGCATGGTTTGTGTCTATTTACTCAA 59.512 34.615 0.00 0.00 32.63 3.02
215 218 6.000840 TGCATGGTTTGTGTCTATTTACTCA 58.999 36.000 0.00 0.00 0.00 3.41
216 219 6.371548 TCTGCATGGTTTGTGTCTATTTACTC 59.628 38.462 0.00 0.00 0.00 2.59
217 220 6.237901 TCTGCATGGTTTGTGTCTATTTACT 58.762 36.000 0.00 0.00 0.00 2.24
218 221 6.494893 TCTGCATGGTTTGTGTCTATTTAC 57.505 37.500 0.00 0.00 0.00 2.01
219 222 7.517614 TTTCTGCATGGTTTGTGTCTATTTA 57.482 32.000 0.00 0.00 0.00 1.40
220 223 6.403866 TTTCTGCATGGTTTGTGTCTATTT 57.596 33.333 0.00 0.00 0.00 1.40
221 224 6.403866 TTTTCTGCATGGTTTGTGTCTATT 57.596 33.333 0.00 0.00 0.00 1.73
222 225 6.403866 TTTTTCTGCATGGTTTGTGTCTAT 57.596 33.333 0.00 0.00 0.00 1.98
223 226 5.843673 TTTTTCTGCATGGTTTGTGTCTA 57.156 34.783 0.00 0.00 0.00 2.59
224 227 4.734398 TTTTTCTGCATGGTTTGTGTCT 57.266 36.364 0.00 0.00 0.00 3.41
242 245 9.120538 TGCTTTGTGTCTATTTACTCTCTTTTT 57.879 29.630 0.00 0.00 0.00 1.94
243 246 8.677148 TGCTTTGTGTCTATTTACTCTCTTTT 57.323 30.769 0.00 0.00 0.00 2.27
244 247 8.677148 TTGCTTTGTGTCTATTTACTCTCTTT 57.323 30.769 0.00 0.00 0.00 2.52
245 248 8.677148 TTTGCTTTGTGTCTATTTACTCTCTT 57.323 30.769 0.00 0.00 0.00 2.85
246 249 7.095017 GCTTTGCTTTGTGTCTATTTACTCTCT 60.095 37.037 0.00 0.00 0.00 3.10
247 250 7.018235 GCTTTGCTTTGTGTCTATTTACTCTC 58.982 38.462 0.00 0.00 0.00 3.20
248 251 6.486657 TGCTTTGCTTTGTGTCTATTTACTCT 59.513 34.615 0.00 0.00 0.00 3.24
249 252 6.578919 GTGCTTTGCTTTGTGTCTATTTACTC 59.421 38.462 0.00 0.00 0.00 2.59
250 253 6.438763 GTGCTTTGCTTTGTGTCTATTTACT 58.561 36.000 0.00 0.00 0.00 2.24
251 254 5.339611 CGTGCTTTGCTTTGTGTCTATTTAC 59.660 40.000 0.00 0.00 0.00 2.01
252 255 5.448438 CGTGCTTTGCTTTGTGTCTATTTA 58.552 37.500 0.00 0.00 0.00 1.40
253 256 4.290155 CGTGCTTTGCTTTGTGTCTATTT 58.710 39.130 0.00 0.00 0.00 1.40
254 257 3.304659 CCGTGCTTTGCTTTGTGTCTATT 60.305 43.478 0.00 0.00 0.00 1.73
255 258 2.226437 CCGTGCTTTGCTTTGTGTCTAT 59.774 45.455 0.00 0.00 0.00 1.98
256 259 1.601903 CCGTGCTTTGCTTTGTGTCTA 59.398 47.619 0.00 0.00 0.00 2.59
257 260 0.381801 CCGTGCTTTGCTTTGTGTCT 59.618 50.000 0.00 0.00 0.00 3.41
258 261 1.208642 GCCGTGCTTTGCTTTGTGTC 61.209 55.000 0.00 0.00 0.00 3.67
259 262 1.226945 GCCGTGCTTTGCTTTGTGT 60.227 52.632 0.00 0.00 0.00 3.72
260 263 1.950630 GGCCGTGCTTTGCTTTGTG 60.951 57.895 0.00 0.00 0.00 3.33
261 264 2.417097 GGCCGTGCTTTGCTTTGT 59.583 55.556 0.00 0.00 0.00 2.83
262 265 2.730604 CGGCCGTGCTTTGCTTTG 60.731 61.111 19.50 0.00 0.00 2.77
263 266 3.977244 CCGGCCGTGCTTTGCTTT 61.977 61.111 26.12 0.00 0.00 3.51
268 271 4.887190 AACACCCGGCCGTGCTTT 62.887 61.111 26.12 6.43 37.25 3.51
301 304 0.031994 AATTGAGGTTGGCACGTTGC 59.968 50.000 0.00 0.00 44.08 4.17
302 305 2.507339 AAATTGAGGTTGGCACGTTG 57.493 45.000 0.00 0.00 0.00 4.10
303 306 3.634910 AGTAAAATTGAGGTTGGCACGTT 59.365 39.130 0.00 0.00 0.00 3.99
304 307 3.219281 AGTAAAATTGAGGTTGGCACGT 58.781 40.909 0.00 0.00 0.00 4.49
305 308 3.915437 AGTAAAATTGAGGTTGGCACG 57.085 42.857 0.00 0.00 0.00 5.34
306 309 6.714492 CAAAAAGTAAAATTGAGGTTGGCAC 58.286 36.000 0.00 0.00 0.00 5.01
307 310 5.295540 GCAAAAAGTAAAATTGAGGTTGGCA 59.704 36.000 0.00 0.00 0.00 4.92
308 311 5.295540 TGCAAAAAGTAAAATTGAGGTTGGC 59.704 36.000 0.00 0.00 0.00 4.52
309 312 6.917217 TGCAAAAAGTAAAATTGAGGTTGG 57.083 33.333 0.00 0.00 0.00 3.77
310 313 7.746929 TGTTGCAAAAAGTAAAATTGAGGTTG 58.253 30.769 0.00 0.00 0.00 3.77
311 314 7.913674 TGTTGCAAAAAGTAAAATTGAGGTT 57.086 28.000 0.00 0.00 0.00 3.50
312 315 8.504812 AATGTTGCAAAAAGTAAAATTGAGGT 57.495 26.923 0.00 0.00 29.79 3.85
321 324 9.646427 ACTTTGAGTAAATGTTGCAAAAAGTAA 57.354 25.926 15.03 0.00 34.22 2.24
322 325 9.296400 GACTTTGAGTAAATGTTGCAAAAAGTA 57.704 29.630 16.08 0.52 35.23 2.24
323 326 7.277760 GGACTTTGAGTAAATGTTGCAAAAAGT 59.722 33.333 16.06 16.06 36.58 2.66
324 327 7.277539 TGGACTTTGAGTAAATGTTGCAAAAAG 59.722 33.333 0.00 6.81 0.00 2.27
325 328 7.099764 TGGACTTTGAGTAAATGTTGCAAAAA 58.900 30.769 0.00 0.00 0.00 1.94
326 329 6.634805 TGGACTTTGAGTAAATGTTGCAAAA 58.365 32.000 0.00 0.00 0.00 2.44
327 330 6.214191 TGGACTTTGAGTAAATGTTGCAAA 57.786 33.333 0.00 0.00 0.00 3.68
328 331 5.221224 CCTGGACTTTGAGTAAATGTTGCAA 60.221 40.000 0.00 0.00 0.00 4.08
329 332 4.278170 CCTGGACTTTGAGTAAATGTTGCA 59.722 41.667 0.00 0.00 0.00 4.08
330 333 4.321230 CCCTGGACTTTGAGTAAATGTTGC 60.321 45.833 0.00 0.00 0.00 4.17
331 334 4.218417 CCCCTGGACTTTGAGTAAATGTTG 59.782 45.833 0.00 0.00 0.00 3.33
332 335 4.141018 ACCCCTGGACTTTGAGTAAATGTT 60.141 41.667 0.00 0.00 0.00 2.71
333 336 3.397955 ACCCCTGGACTTTGAGTAAATGT 59.602 43.478 0.00 0.00 0.00 2.71
334 337 4.010349 GACCCCTGGACTTTGAGTAAATG 58.990 47.826 0.00 0.00 0.00 2.32
335 338 3.010250 GGACCCCTGGACTTTGAGTAAAT 59.990 47.826 0.00 0.00 0.00 1.40
336 339 2.374170 GGACCCCTGGACTTTGAGTAAA 59.626 50.000 0.00 0.00 0.00 2.01
337 340 1.982958 GGACCCCTGGACTTTGAGTAA 59.017 52.381 0.00 0.00 0.00 2.24
338 341 1.652947 GGACCCCTGGACTTTGAGTA 58.347 55.000 0.00 0.00 0.00 2.59
339 342 1.481056 CGGACCCCTGGACTTTGAGT 61.481 60.000 0.00 0.00 0.00 3.41
340 343 1.296715 CGGACCCCTGGACTTTGAG 59.703 63.158 0.00 0.00 0.00 3.02
341 344 0.178926 TACGGACCCCTGGACTTTGA 60.179 55.000 0.00 0.00 0.00 2.69
342 345 0.688487 TTACGGACCCCTGGACTTTG 59.312 55.000 0.00 0.00 0.00 2.77
343 346 1.437397 TTTACGGACCCCTGGACTTT 58.563 50.000 0.00 0.00 0.00 2.66
344 347 1.437397 TTTTACGGACCCCTGGACTT 58.563 50.000 0.00 0.00 0.00 3.01
345 348 1.437397 TTTTTACGGACCCCTGGACT 58.563 50.000 0.00 0.00 0.00 3.85
361 364 2.421314 GCTGCGGGCTTGGTTTTT 59.579 55.556 0.00 0.00 38.06 1.94
375 378 4.994471 TGTGGGCGCTGTGAGCTG 62.994 66.667 7.64 0.00 39.60 4.24
376 379 4.254709 TTGTGGGCGCTGTGAGCT 62.255 61.111 7.64 0.00 39.60 4.09
377 380 4.030452 GTTGTGGGCGCTGTGAGC 62.030 66.667 7.64 0.00 38.02 4.26
378 381 1.518056 AATGTTGTGGGCGCTGTGAG 61.518 55.000 7.64 0.00 0.00 3.51
379 382 1.528076 AATGTTGTGGGCGCTGTGA 60.528 52.632 7.64 0.00 0.00 3.58
380 383 1.372004 CAATGTTGTGGGCGCTGTG 60.372 57.895 7.64 0.00 0.00 3.66
381 384 2.563798 CCAATGTTGTGGGCGCTGT 61.564 57.895 7.64 0.00 34.77 4.40
382 385 2.259204 CCAATGTTGTGGGCGCTG 59.741 61.111 7.64 0.00 34.77 5.18
383 386 3.683937 GCCAATGTTGTGGGCGCT 61.684 61.111 7.64 0.00 39.26 5.92
387 390 0.314935 GTCACTGCCAATGTTGTGGG 59.685 55.000 0.00 0.00 39.26 4.61
388 391 1.031235 TGTCACTGCCAATGTTGTGG 58.969 50.000 0.00 0.00 42.05 4.17
389 392 1.597690 CGTGTCACTGCCAATGTTGTG 60.598 52.381 0.65 0.00 0.00 3.33
390 393 0.662619 CGTGTCACTGCCAATGTTGT 59.337 50.000 0.65 0.00 0.00 3.32
391 394 0.661187 GCGTGTCACTGCCAATGTTG 60.661 55.000 0.65 0.00 0.00 3.33
392 395 1.654220 GCGTGTCACTGCCAATGTT 59.346 52.632 0.65 0.00 0.00 2.71
393 396 3.343972 GCGTGTCACTGCCAATGT 58.656 55.556 0.65 0.00 0.00 2.71
399 402 4.000557 CGTGTGGCGTGTCACTGC 62.001 66.667 6.14 10.20 38.40 4.40
400 403 3.337889 CCGTGTGGCGTGTCACTG 61.338 66.667 6.14 0.00 38.40 3.66
401 404 4.602259 CCCGTGTGGCGTGTCACT 62.602 66.667 6.14 0.00 38.40 3.41
402 405 2.974935 TTACCCGTGTGGCGTGTCAC 62.975 60.000 0.00 0.00 39.32 3.67
403 406 2.102109 ATTACCCGTGTGGCGTGTCA 62.102 55.000 0.00 0.00 39.32 3.58
404 407 1.375013 ATTACCCGTGTGGCGTGTC 60.375 57.895 0.00 0.00 39.32 3.67
405 408 1.669760 CATTACCCGTGTGGCGTGT 60.670 57.895 0.00 0.00 39.32 4.49
406 409 2.395360 CCATTACCCGTGTGGCGTG 61.395 63.158 0.00 0.00 39.32 5.34
407 410 1.906105 ATCCATTACCCGTGTGGCGT 61.906 55.000 0.00 0.00 39.32 5.68
408 411 0.105224 TATCCATTACCCGTGTGGCG 59.895 55.000 0.00 0.00 37.83 5.69
409 412 1.134340 TGTATCCATTACCCGTGTGGC 60.134 52.381 0.00 0.00 37.83 5.01
410 413 2.992124 TGTATCCATTACCCGTGTGG 57.008 50.000 0.00 0.00 41.37 4.17
411 414 4.058124 CTGATGTATCCATTACCCGTGTG 58.942 47.826 0.00 0.00 0.00 3.82
412 415 3.494398 GCTGATGTATCCATTACCCGTGT 60.494 47.826 0.00 0.00 0.00 4.49
413 416 3.067106 GCTGATGTATCCATTACCCGTG 58.933 50.000 0.00 0.00 0.00 4.94
414 417 2.703536 TGCTGATGTATCCATTACCCGT 59.296 45.455 0.00 0.00 0.00 5.28
415 418 3.401033 TGCTGATGTATCCATTACCCG 57.599 47.619 0.00 0.00 0.00 5.28
416 419 3.441572 GCATGCTGATGTATCCATTACCC 59.558 47.826 11.37 0.00 31.50 3.69
417 420 3.125829 CGCATGCTGATGTATCCATTACC 59.874 47.826 17.13 0.00 31.50 2.85
418 421 3.748048 ACGCATGCTGATGTATCCATTAC 59.252 43.478 17.13 0.00 31.50 1.89
419 422 3.996363 GACGCATGCTGATGTATCCATTA 59.004 43.478 17.13 0.00 31.50 1.90
420 423 2.810274 GACGCATGCTGATGTATCCATT 59.190 45.455 17.13 0.00 31.50 3.16
421 424 2.038164 AGACGCATGCTGATGTATCCAT 59.962 45.455 17.13 0.00 31.50 3.41
422 425 1.413812 AGACGCATGCTGATGTATCCA 59.586 47.619 17.13 0.00 31.50 3.41
423 426 2.160822 AGACGCATGCTGATGTATCC 57.839 50.000 17.13 0.00 31.50 2.59
424 427 4.151335 CCTTTAGACGCATGCTGATGTATC 59.849 45.833 17.13 2.99 31.50 2.24
425 428 4.060900 CCTTTAGACGCATGCTGATGTAT 58.939 43.478 17.13 5.97 31.50 2.29
426 429 3.457234 CCTTTAGACGCATGCTGATGTA 58.543 45.455 17.13 1.20 31.50 2.29
427 430 2.283298 CCTTTAGACGCATGCTGATGT 58.717 47.619 17.13 5.82 31.50 3.06
428 431 1.003116 GCCTTTAGACGCATGCTGATG 60.003 52.381 17.13 2.03 0.00 3.07
429 432 1.303309 GCCTTTAGACGCATGCTGAT 58.697 50.000 17.13 0.20 0.00 2.90
430 433 0.036483 TGCCTTTAGACGCATGCTGA 60.036 50.000 17.13 0.00 0.00 4.26
431 434 0.097674 GTGCCTTTAGACGCATGCTG 59.902 55.000 17.13 11.87 37.33 4.41
432 435 1.026718 GGTGCCTTTAGACGCATGCT 61.027 55.000 17.13 2.38 37.33 3.79
433 436 1.429423 GGTGCCTTTAGACGCATGC 59.571 57.895 7.91 7.91 37.33 4.06
434 437 1.019278 ACGGTGCCTTTAGACGCATG 61.019 55.000 0.00 0.00 37.33 4.06
435 438 0.533491 TACGGTGCCTTTAGACGCAT 59.467 50.000 0.00 0.00 37.33 4.73
436 439 0.533491 ATACGGTGCCTTTAGACGCA 59.467 50.000 0.00 0.00 0.00 5.24
437 440 1.648504 AATACGGTGCCTTTAGACGC 58.351 50.000 0.00 0.00 0.00 5.19
438 441 3.255725 TCAAATACGGTGCCTTTAGACG 58.744 45.455 0.00 0.00 0.00 4.18
439 442 4.435121 CGTTCAAATACGGTGCCTTTAGAC 60.435 45.833 0.00 0.00 37.86 2.59
440 443 3.680937 CGTTCAAATACGGTGCCTTTAGA 59.319 43.478 0.00 0.00 37.86 2.10
441 444 3.434299 ACGTTCAAATACGGTGCCTTTAG 59.566 43.478 0.00 0.00 45.44 1.85
442 445 3.401182 ACGTTCAAATACGGTGCCTTTA 58.599 40.909 0.00 0.00 45.44 1.85
443 446 2.223745 ACGTTCAAATACGGTGCCTTT 58.776 42.857 0.00 0.00 45.44 3.11
444 447 1.802365 GACGTTCAAATACGGTGCCTT 59.198 47.619 0.00 0.00 45.44 4.35
445 448 1.435577 GACGTTCAAATACGGTGCCT 58.564 50.000 0.00 0.00 45.44 4.75
446 449 0.445043 GGACGTTCAAATACGGTGCC 59.555 55.000 0.00 0.00 45.44 5.01
447 450 0.094046 CGGACGTTCAAATACGGTGC 59.906 55.000 0.00 0.00 45.44 5.01
448 451 0.717224 CCGGACGTTCAAATACGGTG 59.283 55.000 0.00 0.00 45.44 4.94
449 452 0.602562 TCCGGACGTTCAAATACGGT 59.397 50.000 0.00 0.00 45.44 4.83
450 453 0.994263 GTCCGGACGTTCAAATACGG 59.006 55.000 20.85 0.00 45.44 4.02
462 465 0.453449 GTGTCGTAACTCGTCCGGAC 60.453 60.000 25.28 25.28 40.80 4.79
463 466 0.603707 AGTGTCGTAACTCGTCCGGA 60.604 55.000 0.00 0.00 40.80 5.14
464 467 1.078709 TAGTGTCGTAACTCGTCCGG 58.921 55.000 0.00 0.00 40.80 5.14
465 468 3.395858 AATAGTGTCGTAACTCGTCCG 57.604 47.619 0.00 0.00 40.80 4.79
466 469 7.274250 ACATAAAAATAGTGTCGTAACTCGTCC 59.726 37.037 0.00 0.00 40.80 4.79
467 470 8.166367 ACATAAAAATAGTGTCGTAACTCGTC 57.834 34.615 0.00 0.00 40.80 4.20
468 471 9.793252 ATACATAAAAATAGTGTCGTAACTCGT 57.207 29.630 0.00 0.00 40.80 4.18
489 492 9.995003 TTTGATGCCTAAACTTGAAAAATACAT 57.005 25.926 0.00 0.00 0.00 2.29
490 493 9.255304 GTTTGATGCCTAAACTTGAAAAATACA 57.745 29.630 0.00 0.00 35.65 2.29
491 494 9.476202 AGTTTGATGCCTAAACTTGAAAAATAC 57.524 29.630 0.00 0.00 43.71 1.89
492 495 9.474920 CAGTTTGATGCCTAAACTTGAAAAATA 57.525 29.630 7.18 0.00 43.71 1.40
493 496 8.203485 TCAGTTTGATGCCTAAACTTGAAAAAT 58.797 29.630 7.18 0.00 43.71 1.82
494 497 7.491048 GTCAGTTTGATGCCTAAACTTGAAAAA 59.509 33.333 7.18 0.00 43.71 1.94
495 498 6.978080 GTCAGTTTGATGCCTAAACTTGAAAA 59.022 34.615 7.18 0.00 43.71 2.29
496 499 6.460953 GGTCAGTTTGATGCCTAAACTTGAAA 60.461 38.462 7.18 0.00 43.71 2.69
497 500 5.009610 GGTCAGTTTGATGCCTAAACTTGAA 59.990 40.000 7.18 0.00 43.71 2.69
498 501 4.518970 GGTCAGTTTGATGCCTAAACTTGA 59.481 41.667 7.18 6.52 43.71 3.02
499 502 4.613622 CGGTCAGTTTGATGCCTAAACTTG 60.614 45.833 7.18 4.88 43.71 3.16
500 503 3.502211 CGGTCAGTTTGATGCCTAAACTT 59.498 43.478 7.18 0.00 43.71 2.66
501 504 3.074412 CGGTCAGTTTGATGCCTAAACT 58.926 45.455 0.00 0.00 46.23 2.66
502 505 3.071479 TCGGTCAGTTTGATGCCTAAAC 58.929 45.455 0.00 0.00 38.09 2.01
503 506 3.334691 CTCGGTCAGTTTGATGCCTAAA 58.665 45.455 0.00 0.00 0.00 1.85
504 507 2.935238 GCTCGGTCAGTTTGATGCCTAA 60.935 50.000 0.00 0.00 0.00 2.69
505 508 1.405526 GCTCGGTCAGTTTGATGCCTA 60.406 52.381 0.00 0.00 0.00 3.93
506 509 0.674895 GCTCGGTCAGTTTGATGCCT 60.675 55.000 0.00 0.00 0.00 4.75
507 510 0.674895 AGCTCGGTCAGTTTGATGCC 60.675 55.000 0.00 0.00 0.00 4.40
508 511 0.445436 CAGCTCGGTCAGTTTGATGC 59.555 55.000 0.00 0.00 0.00 3.91
509 512 2.084610 TCAGCTCGGTCAGTTTGATG 57.915 50.000 0.00 0.00 0.00 3.07
510 513 2.224281 TGTTCAGCTCGGTCAGTTTGAT 60.224 45.455 0.00 0.00 0.00 2.57
511 514 1.138069 TGTTCAGCTCGGTCAGTTTGA 59.862 47.619 0.00 0.00 0.00 2.69
512 515 1.581934 TGTTCAGCTCGGTCAGTTTG 58.418 50.000 0.00 0.00 0.00 2.93
513 516 2.213499 CTTGTTCAGCTCGGTCAGTTT 58.787 47.619 0.00 0.00 0.00 2.66
514 517 1.139058 ACTTGTTCAGCTCGGTCAGTT 59.861 47.619 0.00 0.00 0.00 3.16
515 518 0.753262 ACTTGTTCAGCTCGGTCAGT 59.247 50.000 0.00 0.00 0.00 3.41
516 519 1.871080 AACTTGTTCAGCTCGGTCAG 58.129 50.000 0.00 0.00 0.00 3.51
517 520 3.390135 CTTAACTTGTTCAGCTCGGTCA 58.610 45.455 0.00 0.00 0.00 4.02
518 521 2.737252 CCTTAACTTGTTCAGCTCGGTC 59.263 50.000 0.00 0.00 0.00 4.79
519 522 2.104281 ACCTTAACTTGTTCAGCTCGGT 59.896 45.455 0.00 0.00 0.00 4.69
520 523 2.767505 ACCTTAACTTGTTCAGCTCGG 58.232 47.619 0.00 0.00 0.00 4.63
521 524 3.678548 GGTACCTTAACTTGTTCAGCTCG 59.321 47.826 4.06 0.00 0.00 5.03
552 555 9.826574 TGCGGTACTAATAAAGATGACTTAAAT 57.173 29.630 0.00 0.00 35.05 1.40
553 556 9.656040 TTGCGGTACTAATAAAGATGACTTAAA 57.344 29.630 0.00 0.00 35.05 1.52
554 557 9.309516 CTTGCGGTACTAATAAAGATGACTTAA 57.690 33.333 0.00 0.00 35.05 1.85
555 558 7.437267 GCTTGCGGTACTAATAAAGATGACTTA 59.563 37.037 0.00 0.00 35.05 2.24
556 559 6.258068 GCTTGCGGTACTAATAAAGATGACTT 59.742 38.462 0.00 0.00 38.05 3.01
560 563 5.984233 TGCTTGCGGTACTAATAAAGATG 57.016 39.130 0.00 0.00 0.00 2.90
617 621 3.516615 GGAGCTCTGCAACAAGTACTAG 58.483 50.000 14.64 0.00 0.00 2.57
647 651 0.326264 ATCACCTGCCACCAGTCTTC 59.674 55.000 0.00 0.00 37.38 2.87
666 671 6.365247 GCTAACAAACATAAGAACTCGAGTGA 59.635 38.462 20.85 5.49 0.00 3.41
668 673 6.366332 CAGCTAACAAACATAAGAACTCGAGT 59.634 38.462 13.58 13.58 0.00 4.18
672 677 7.639945 ACAACAGCTAACAAACATAAGAACTC 58.360 34.615 0.00 0.00 0.00 3.01
702 707 4.471025 TCAGCATCAGGGAAACAGAGATAA 59.529 41.667 0.00 0.00 0.00 1.75
777 782 9.512588 GAAACATCCTGATAATGACCATAAGAT 57.487 33.333 0.00 0.00 0.00 2.40
791 800 4.978099 ACTGTTGAGTGAAACATCCTGAT 58.022 39.130 0.00 0.00 41.43 2.90
931 940 0.811281 GAATGGGTAGCGCTGCTTTT 59.189 50.000 24.82 15.20 40.44 2.27
986 995 7.239972 GTGAAGAAGCATATTGAAGTTGAGAC 58.760 38.462 0.00 0.00 0.00 3.36
987 996 6.372659 GGTGAAGAAGCATATTGAAGTTGAGA 59.627 38.462 0.00 0.00 0.00 3.27
1017 1026 3.368427 GGGTGAAAATAAGGCCAAGAAGC 60.368 47.826 5.01 0.00 0.00 3.86
1169 1178 2.692557 CAATTCAAGGTGTTGTGGGACA 59.307 45.455 0.00 0.00 34.98 4.02
1284 1293 3.258872 TGCCATCTTGGGAAATTGTGAAG 59.741 43.478 0.00 0.00 33.84 3.02
1336 1345 2.629137 CTCTGCTAGACCAGATCATGCT 59.371 50.000 0.00 0.00 40.77 3.79
1337 1346 2.364970 ACTCTGCTAGACCAGATCATGC 59.635 50.000 0.00 0.00 40.77 4.06
1627 1636 1.269998 CCCGCTAGACCAGTATGCTAC 59.730 57.143 0.00 0.00 31.97 3.58
1830 1839 3.655777 AGGAACCTAACCAATCCTGTGAA 59.344 43.478 0.00 0.00 40.73 3.18
1996 2005 3.496130 GGAGTATTTCTCATGCATCCACG 59.504 47.826 0.00 0.00 44.40 4.94
2053 2063 5.817816 ACAAGGAATAGAATTCATCGGTCAC 59.182 40.000 8.44 0.00 0.00 3.67
2058 2068 6.925610 TTGGACAAGGAATAGAATTCATCG 57.074 37.500 8.44 0.00 0.00 3.84
2070 2080 4.502950 GGCAATTTCACATTGGACAAGGAA 60.503 41.667 3.52 0.00 0.00 3.36
2112 2122 2.512286 GCACTGATAGCAGCGCCA 60.512 61.111 9.83 0.00 46.26 5.69
2220 2230 4.616604 GCATGCTGCTGTTTTACATTGAGA 60.617 41.667 11.37 0.00 40.96 3.27
2416 2429 3.555966 CAGACCAATCCCTATTGTTCCC 58.444 50.000 0.00 0.00 40.84 3.97
2797 2810 6.042781 CCCAGAGCTATTTTATACCTGGTACA 59.957 42.308 9.09 0.00 38.33 2.90
3069 3190 2.051334 TTTCCATTAGCACCATCCCG 57.949 50.000 0.00 0.00 0.00 5.14
3129 3250 2.861462 AAACAACACAATCACCACCG 57.139 45.000 0.00 0.00 0.00 4.94
3143 3264 2.224018 GCATGCACAGGGAAGAAAACAA 60.224 45.455 14.21 0.00 0.00 2.83
3219 3340 4.208746 CCTCCTCTAGATTTACGTCACCT 58.791 47.826 0.00 0.00 0.00 4.00
3225 3346 4.612943 GTTCAGCCTCCTCTAGATTTACG 58.387 47.826 0.00 0.00 0.00 3.18
3312 3433 3.759581 ACCCTCTAGAGTACGAACAACA 58.240 45.455 18.42 0.00 0.00 3.33
3515 3642 4.296056 ACTCCCTCCGGTTCATATTAACT 58.704 43.478 0.00 0.00 0.00 2.24
3574 3701 8.216423 AGATATATGGTGTCATTCTTCTTGCTT 58.784 33.333 0.00 0.00 34.96 3.91
3676 3803 7.147312 TGAGCTTTTGACGAATTTCATTTCAT 58.853 30.769 0.00 0.00 0.00 2.57
3683 3813 3.665871 GCACTGAGCTTTTGACGAATTTC 59.334 43.478 0.00 0.00 41.15 2.17
3741 3915 3.812156 TCCAGTGAAGAAGTGAACGAA 57.188 42.857 0.00 0.00 0.00 3.85
3775 3951 4.860907 CAGAGCAAGGCAACAAATGATAAC 59.139 41.667 0.00 0.00 41.41 1.89
3831 4009 5.949952 ACCGCCCTCAAATTAACTTTAGAAT 59.050 36.000 0.00 0.00 0.00 2.40
3836 4014 2.486592 CGACCGCCCTCAAATTAACTTT 59.513 45.455 0.00 0.00 0.00 2.66
3955 4148 1.832998 GTTGGGCAATGGTCATGGAAT 59.167 47.619 0.00 0.00 0.00 3.01
3956 4149 1.265236 GTTGGGCAATGGTCATGGAA 58.735 50.000 0.00 0.00 0.00 3.53
3957 4150 0.113972 TGTTGGGCAATGGTCATGGA 59.886 50.000 0.00 0.00 0.00 3.41
3958 4151 0.247185 GTGTTGGGCAATGGTCATGG 59.753 55.000 0.00 0.00 0.00 3.66
3959 4152 0.967662 TGTGTTGGGCAATGGTCATG 59.032 50.000 0.00 0.00 0.00 3.07
3960 4153 1.203038 TCTGTGTTGGGCAATGGTCAT 60.203 47.619 0.00 0.00 0.00 3.06
3983 4176 2.872858 GCTCAAAATAAGGCCTCGGTAG 59.127 50.000 5.23 0.00 0.00 3.18
3990 4183 2.931969 GCACAATGCTCAAAATAAGGCC 59.068 45.455 0.00 0.00 40.96 5.19
4015 4210 5.233902 TGCTTCCACGAAATTTTTCATGTTG 59.766 36.000 4.12 0.00 37.01 3.33
4113 4329 5.446143 TTTTTGCGAATGAATGTGTACCT 57.554 34.783 0.00 0.00 0.00 3.08
4135 4351 6.311735 TGTGTATCTAAAGGGGCTTCTTTTT 58.688 36.000 10.51 2.32 37.96 1.94
4136 4352 5.887754 TGTGTATCTAAAGGGGCTTCTTTT 58.112 37.500 10.51 2.58 37.96 2.27
4137 4353 5.514500 TGTGTATCTAAAGGGGCTTCTTT 57.486 39.130 10.21 10.21 39.86 2.52
4138 4354 5.717119 ATGTGTATCTAAAGGGGCTTCTT 57.283 39.130 0.00 0.00 0.00 2.52
4139 4355 5.440610 CAATGTGTATCTAAAGGGGCTTCT 58.559 41.667 0.00 0.00 0.00 2.85
4140 4356 4.036852 GCAATGTGTATCTAAAGGGGCTTC 59.963 45.833 0.00 0.00 0.00 3.86
4141 4357 3.954258 GCAATGTGTATCTAAAGGGGCTT 59.046 43.478 0.00 0.00 0.00 4.35
4142 4358 3.053693 TGCAATGTGTATCTAAAGGGGCT 60.054 43.478 0.00 0.00 0.00 5.19
4143 4359 3.287222 TGCAATGTGTATCTAAAGGGGC 58.713 45.455 0.00 0.00 0.00 5.80
4144 4360 5.473504 GGTATGCAATGTGTATCTAAAGGGG 59.526 44.000 0.00 0.00 0.00 4.79
4145 4361 6.061441 TGGTATGCAATGTGTATCTAAAGGG 58.939 40.000 0.00 0.00 0.00 3.95
4146 4362 7.066887 TGTTGGTATGCAATGTGTATCTAAAGG 59.933 37.037 0.00 0.00 0.00 3.11
4147 4363 7.984391 TGTTGGTATGCAATGTGTATCTAAAG 58.016 34.615 0.00 0.00 0.00 1.85
4148 4364 7.929941 TGTTGGTATGCAATGTGTATCTAAA 57.070 32.000 0.00 0.00 0.00 1.85
4149 4365 7.826744 TCTTGTTGGTATGCAATGTGTATCTAA 59.173 33.333 0.00 0.00 0.00 2.10
4150 4366 7.279981 GTCTTGTTGGTATGCAATGTGTATCTA 59.720 37.037 0.00 0.00 0.00 1.98
4240 5707 2.267160 TGGCCCAATCCATCCAAAAT 57.733 45.000 0.00 0.00 0.00 1.82
4249 5716 5.045942 TCCTTATTTTTCTTTGGCCCAATCC 60.046 40.000 0.00 0.00 0.00 3.01
4275 5742 3.120616 CGTCATGAAAAATGCAGCACTTG 59.879 43.478 0.00 0.00 0.00 3.16
4405 8667 4.556501 CGCTTATCACTGAACCAAAGCAAA 60.557 41.667 14.25 0.00 39.36 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.