Multiple sequence alignment - TraesCS2B01G315500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G315500 chr2B 100.000 2411 0 0 1 2411 451116959 451119369 0.000000e+00 4453.0
1 TraesCS2B01G315500 chr2B 77.090 598 119 16 2 589 674059057 674058468 1.790000e-86 329.0
2 TraesCS2B01G315500 chr2B 89.447 199 15 5 1599 1792 451118355 451118552 1.850000e-61 246.0
3 TraesCS2B01G315500 chr2B 89.447 199 15 5 1397 1594 451118557 451118750 1.850000e-61 246.0
4 TraesCS2B01G315500 chr2D 92.652 1633 65 21 1 1596 379855132 379856746 0.000000e+00 2300.0
5 TraesCS2B01G315500 chr2D 79.466 599 110 9 19 609 499102285 499101692 1.720000e-111 412.0
6 TraesCS2B01G315500 chr2D 80.041 491 87 9 1 484 229694262 229694748 1.060000e-93 353.0
7 TraesCS2B01G315500 chr2D 76.549 597 130 9 21 611 343378642 343379234 3.870000e-83 318.0
8 TraesCS2B01G315500 chr2D 83.333 72 9 3 1521 1592 380692783 380692715 2.000000e-06 63.9
9 TraesCS2B01G315500 chr2A 88.356 1022 64 23 620 1594 514857157 514858170 0.000000e+00 1177.0
10 TraesCS2B01G315500 chr2A 92.754 414 30 0 996 1409 619760518 619760931 1.230000e-167 599.0
11 TraesCS2B01G315500 chr2A 85.989 364 33 8 1599 1946 514857969 514858330 8.140000e-100 374.0
12 TraesCS2B01G315500 chr2A 85.057 174 13 5 2004 2164 514858346 514858519 5.330000e-37 165.0
13 TraesCS2B01G315500 chr2A 85.437 103 11 3 2184 2286 514858630 514858728 1.180000e-18 104.0
14 TraesCS2B01G315500 chr7D 92.995 414 29 0 996 1409 91699848 91699435 2.650000e-169 604.0
15 TraesCS2B01G315500 chr7D 72.320 513 125 15 21 525 184508147 184508650 6.950000e-31 145.0
16 TraesCS2B01G315500 chr4D 92.548 416 30 1 998 1412 444177288 444177703 1.600000e-166 595.0
17 TraesCS2B01G315500 chr7B 92.512 414 31 0 996 1409 63934975 63935388 5.740000e-166 593.0
18 TraesCS2B01G315500 chr4A 92.476 412 31 0 998 1409 23611220 23610809 7.420000e-165 590.0
19 TraesCS2B01G315500 chr4A 78.428 598 116 9 21 611 475416645 475416054 6.290000e-101 377.0
20 TraesCS2B01G315500 chr1D 92.233 412 32 0 998 1409 369925929 369925518 3.450000e-163 584.0
21 TraesCS2B01G315500 chr1D 77.265 585 122 10 2 579 433173367 433173947 1.380000e-87 333.0
22 TraesCS2B01G315500 chr1A 92.233 412 32 0 998 1409 468599198 468598787 3.450000e-163 584.0
23 TraesCS2B01G315500 chr5B 79.016 610 113 10 16 616 357151904 357152507 1.040000e-108 403.0
24 TraesCS2B01G315500 chr4B 75.767 619 144 4 1 615 429716724 429716108 8.370000e-80 307.0
25 TraesCS2B01G315500 chr4B 92.405 79 5 1 2332 2409 569761775 569761697 7.050000e-21 111.0
26 TraesCS2B01G315500 chr6B 75.209 597 131 14 17 603 3857340 3857929 1.420000e-67 267.0
27 TraesCS2B01G315500 chr7A 92.593 81 5 1 2329 2408 81146804 81146884 5.450000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G315500 chr2B 451116959 451119369 2410 False 1648.333333 4453 92.964667 1 2411 3 chr2B.!!$F1 2410
1 TraesCS2B01G315500 chr2B 674058468 674059057 589 True 329.000000 329 77.090000 2 589 1 chr2B.!!$R1 587
2 TraesCS2B01G315500 chr2D 379855132 379856746 1614 False 2300.000000 2300 92.652000 1 1596 1 chr2D.!!$F3 1595
3 TraesCS2B01G315500 chr2D 499101692 499102285 593 True 412.000000 412 79.466000 19 609 1 chr2D.!!$R2 590
4 TraesCS2B01G315500 chr2D 343378642 343379234 592 False 318.000000 318 76.549000 21 611 1 chr2D.!!$F2 590
5 TraesCS2B01G315500 chr2A 514857157 514858728 1571 False 455.000000 1177 86.209750 620 2286 4 chr2A.!!$F2 1666
6 TraesCS2B01G315500 chr4A 475416054 475416645 591 True 377.000000 377 78.428000 21 611 1 chr4A.!!$R2 590
7 TraesCS2B01G315500 chr1D 433173367 433173947 580 False 333.000000 333 77.265000 2 579 1 chr1D.!!$F1 577
8 TraesCS2B01G315500 chr5B 357151904 357152507 603 False 403.000000 403 79.016000 16 616 1 chr5B.!!$F1 600
9 TraesCS2B01G315500 chr4B 429716108 429716724 616 True 307.000000 307 75.767000 1 615 1 chr4B.!!$R1 614
10 TraesCS2B01G315500 chr6B 3857340 3857929 589 False 267.000000 267 75.209000 17 603 1 chr6B.!!$F1 586

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
388 396 0.385598 CGCTGACGACTGAGAAACGA 60.386 55.0 0.0 0.0 43.93 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2311 2477 0.031178 CGCCTAGCATTGCCCAAATC 59.969 55.0 4.7 0.0 0.0 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
388 396 0.385598 CGCTGACGACTGAGAAACGA 60.386 55.000 0.00 0.00 43.93 3.85
398 406 8.980610 TGACGACTGAGAAACGAATTTTAATAA 58.019 29.630 0.00 0.00 0.00 1.40
411 419 5.914898 ATTTTAATAAGCACGAAAGGCCT 57.085 34.783 0.00 0.00 0.00 5.19
413 421 4.695217 TTAATAAGCACGAAAGGCCTTG 57.305 40.909 21.33 10.33 0.00 3.61
781 791 3.181455 ACATCATCGCAGCCAATAAGGTA 60.181 43.478 0.00 0.00 40.61 3.08
840 852 3.147595 CCTCCTGCCGTCGGATCA 61.148 66.667 17.49 3.10 0.00 2.92
924 961 4.161295 CCTCCGCAGCCAATCCGA 62.161 66.667 0.00 0.00 0.00 4.55
929 966 1.448540 CGCAGCCAATCCGAGAACT 60.449 57.895 0.00 0.00 0.00 3.01
934 971 1.347707 AGCCAATCCGAGAACTCACAA 59.652 47.619 2.78 0.00 0.00 3.33
960 997 2.456119 CCACAGCGCCATTCTCGAC 61.456 63.158 2.29 0.00 0.00 4.20
1383 1434 1.817099 CAAGGACATCCAGCTCGCC 60.817 63.158 0.00 0.00 38.89 5.54
1416 1467 1.144936 CGAGAGGGCCTGATGAACC 59.855 63.158 12.95 0.00 0.00 3.62
1418 1469 0.107459 GAGAGGGCCTGATGAACCAC 60.107 60.000 12.95 0.00 0.00 4.16
1427 1480 2.304180 CCTGATGAACCACCTCTCTGTT 59.696 50.000 0.00 0.00 0.00 3.16
1432 1485 2.104792 TGAACCACCTCTCTGTTTCTGG 59.895 50.000 0.00 0.00 0.00 3.86
1443 1496 1.004440 GTTTCTGGTCTCTGCCGCT 60.004 57.895 0.00 0.00 0.00 5.52
1461 1514 1.461127 GCTGTTGATGTTCTCGGTGTC 59.539 52.381 0.00 0.00 0.00 3.67
1491 1544 6.741358 GTCGTGTGTTAGGATTTAGAAAATGC 59.259 38.462 0.00 0.00 0.00 3.56
1494 1547 7.360861 CGTGTGTTAGGATTTAGAAAATGCTGA 60.361 37.037 14.38 5.67 30.81 4.26
1512 1565 0.235926 GAGTTGTCGCCTGTTGCTTC 59.764 55.000 0.00 0.00 38.05 3.86
1530 1586 7.614583 TGTTGCTTCCTACTAGTATCTTGTAGT 59.385 37.037 2.33 0.00 37.83 2.73
1546 1602 1.204941 GTAGTGATGGTTCGCCTCTGT 59.795 52.381 0.00 0.00 38.36 3.41
1596 1652 4.746115 TGCTTCATTGCTTTGTGAATGTTC 59.254 37.500 0.00 0.00 34.18 3.18
1597 1653 4.746115 GCTTCATTGCTTTGTGAATGTTCA 59.254 37.500 0.00 0.00 34.18 3.18
1598 1654 5.107607 GCTTCATTGCTTTGTGAATGTTCAG 60.108 40.000 0.00 0.00 37.98 3.02
1600 1656 2.798976 TGCTTTGTGAATGTTCAGGC 57.201 45.000 0.00 0.53 37.98 4.85
1601 1657 1.001487 TGCTTTGTGAATGTTCAGGCG 60.001 47.619 0.00 0.00 37.98 5.52
1602 1658 1.266718 GCTTTGTGAATGTTCAGGCGA 59.733 47.619 0.00 0.00 37.98 5.54
1603 1659 2.666619 GCTTTGTGAATGTTCAGGCGAG 60.667 50.000 0.00 0.00 37.98 5.03
1604 1660 2.542020 TTGTGAATGTTCAGGCGAGA 57.458 45.000 0.00 0.00 37.98 4.04
1605 1661 2.084610 TGTGAATGTTCAGGCGAGAG 57.915 50.000 0.00 0.00 37.98 3.20
1606 1662 1.338105 TGTGAATGTTCAGGCGAGAGG 60.338 52.381 0.00 0.00 37.98 3.69
1607 1663 0.250234 TGAATGTTCAGGCGAGAGGG 59.750 55.000 0.00 0.00 32.50 4.30
1608 1664 1.078143 AATGTTCAGGCGAGAGGGC 60.078 57.895 0.00 0.00 42.69 5.19
1616 1672 2.903357 GCGAGAGGGCCTGATGAA 59.097 61.111 12.95 0.00 0.00 2.57
1617 1673 1.522580 GCGAGAGGGCCTGATGAAC 60.523 63.158 12.95 0.00 0.00 3.18
1618 1674 1.144936 CGAGAGGGCCTGATGAACC 59.855 63.158 12.95 0.00 0.00 3.62
1619 1675 1.617018 CGAGAGGGCCTGATGAACCA 61.617 60.000 12.95 0.00 0.00 3.67
1620 1676 0.107459 GAGAGGGCCTGATGAACCAC 60.107 60.000 12.95 0.00 0.00 4.16
1621 1677 1.077429 GAGGGCCTGATGAACCACC 60.077 63.158 12.95 0.00 0.00 4.61
1622 1678 1.542375 AGGGCCTGATGAACCACCT 60.542 57.895 4.50 0.00 0.00 4.00
1623 1679 1.077429 GGGCCTGATGAACCACCTC 60.077 63.158 0.84 0.00 0.00 3.85
1624 1680 1.077429 GGCCTGATGAACCACCTCC 60.077 63.158 0.00 0.00 0.00 4.30
1625 1681 1.077429 GCCTGATGAACCACCTCCC 60.077 63.158 0.00 0.00 0.00 4.30
1626 1682 1.852157 GCCTGATGAACCACCTCCCA 61.852 60.000 0.00 0.00 0.00 4.37
1627 1683 0.254178 CCTGATGAACCACCTCCCAG 59.746 60.000 0.00 0.00 0.00 4.45
1628 1684 0.987294 CTGATGAACCACCTCCCAGT 59.013 55.000 0.00 0.00 0.00 4.00
1629 1685 0.984230 TGATGAACCACCTCCCAGTC 59.016 55.000 0.00 0.00 0.00 3.51
1630 1686 1.280457 GATGAACCACCTCCCAGTCT 58.720 55.000 0.00 0.00 0.00 3.24
1631 1687 1.208293 GATGAACCACCTCCCAGTCTC 59.792 57.143 0.00 0.00 0.00 3.36
1632 1688 0.191064 TGAACCACCTCCCAGTCTCT 59.809 55.000 0.00 0.00 0.00 3.10
1633 1689 0.610687 GAACCACCTCCCAGTCTCTG 59.389 60.000 0.00 0.00 0.00 3.35
1634 1690 0.104934 AACCACCTCCCAGTCTCTGT 60.105 55.000 0.00 0.00 0.00 3.41
1635 1691 0.104934 ACCACCTCCCAGTCTCTGTT 60.105 55.000 0.00 0.00 0.00 3.16
1636 1692 0.610687 CCACCTCCCAGTCTCTGTTC 59.389 60.000 0.00 0.00 0.00 3.18
1637 1693 1.638529 CACCTCCCAGTCTCTGTTCT 58.361 55.000 0.00 0.00 0.00 3.01
1638 1694 1.548269 CACCTCCCAGTCTCTGTTCTC 59.452 57.143 0.00 0.00 0.00 2.87
1639 1695 1.431243 ACCTCCCAGTCTCTGTTCTCT 59.569 52.381 0.00 0.00 0.00 3.10
1640 1696 1.824230 CCTCCCAGTCTCTGTTCTCTG 59.176 57.143 0.00 0.00 0.00 3.35
1641 1697 1.204467 CTCCCAGTCTCTGTTCTCTGC 59.796 57.143 0.00 0.00 0.00 4.26
1642 1698 0.248843 CCCAGTCTCTGTTCTCTGCC 59.751 60.000 0.00 0.00 0.00 4.85
1643 1699 0.108898 CCAGTCTCTGTTCTCTGCCG 60.109 60.000 0.00 0.00 0.00 5.69
1644 1700 0.735632 CAGTCTCTGTTCTCTGCCGC 60.736 60.000 0.00 0.00 0.00 6.53
1645 1701 0.897863 AGTCTCTGTTCTCTGCCGCT 60.898 55.000 0.00 0.00 0.00 5.52
1646 1702 0.735632 GTCTCTGTTCTCTGCCGCTG 60.736 60.000 0.00 0.00 0.00 5.18
1647 1703 1.181741 TCTCTGTTCTCTGCCGCTGT 61.182 55.000 0.00 0.00 0.00 4.40
1648 1704 0.320247 CTCTGTTCTCTGCCGCTGTT 60.320 55.000 0.00 0.00 0.00 3.16
1649 1705 0.601046 TCTGTTCTCTGCCGCTGTTG 60.601 55.000 0.00 0.00 0.00 3.33
1650 1706 0.601046 CTGTTCTCTGCCGCTGTTGA 60.601 55.000 0.00 0.00 0.00 3.18
1651 1707 0.035317 TGTTCTCTGCCGCTGTTGAT 59.965 50.000 0.00 0.00 0.00 2.57
1652 1708 0.445436 GTTCTCTGCCGCTGTTGATG 59.555 55.000 0.00 0.00 0.00 3.07
1653 1709 0.035317 TTCTCTGCCGCTGTTGATGT 59.965 50.000 0.00 0.00 0.00 3.06
1654 1710 0.035317 TCTCTGCCGCTGTTGATGTT 59.965 50.000 0.00 0.00 0.00 2.71
1655 1711 0.445436 CTCTGCCGCTGTTGATGTTC 59.555 55.000 0.00 0.00 0.00 3.18
1656 1712 0.035317 TCTGCCGCTGTTGATGTTCT 59.965 50.000 0.00 0.00 0.00 3.01
1657 1713 0.877071 CTGCCGCTGTTGATGTTCTT 59.123 50.000 0.00 0.00 0.00 2.52
1658 1714 0.592637 TGCCGCTGTTGATGTTCTTG 59.407 50.000 0.00 0.00 0.00 3.02
1659 1715 0.109597 GCCGCTGTTGATGTTCTTGG 60.110 55.000 0.00 0.00 0.00 3.61
1660 1716 1.238439 CCGCTGTTGATGTTCTTGGT 58.762 50.000 0.00 0.00 0.00 3.67
1661 1717 1.069022 CCGCTGTTGATGTTCTTGGTG 60.069 52.381 0.00 0.00 0.00 4.17
1662 1718 1.069022 CGCTGTTGATGTTCTTGGTGG 60.069 52.381 0.00 0.00 0.00 4.61
1663 1719 1.336240 GCTGTTGATGTTCTTGGTGGC 60.336 52.381 0.00 0.00 0.00 5.01
1664 1720 1.270550 CTGTTGATGTTCTTGGTGGCC 59.729 52.381 0.00 0.00 0.00 5.36
1665 1721 0.240945 GTTGATGTTCTTGGTGGCCG 59.759 55.000 0.00 0.00 0.00 6.13
1666 1722 0.179004 TTGATGTTCTTGGTGGCCGT 60.179 50.000 0.00 0.00 0.00 5.68
1667 1723 0.605319 TGATGTTCTTGGTGGCCGTC 60.605 55.000 0.00 0.00 0.00 4.79
1668 1724 1.635663 GATGTTCTTGGTGGCCGTCG 61.636 60.000 0.00 0.00 0.00 5.12
1669 1725 2.280592 GTTCTTGGTGGCCGTCGT 60.281 61.111 0.00 0.00 0.00 4.34
1670 1726 2.029964 TTCTTGGTGGCCGTCGTC 59.970 61.111 0.00 0.00 0.00 4.20
1671 1727 3.851845 TTCTTGGTGGCCGTCGTCG 62.852 63.158 0.00 0.00 0.00 5.12
1672 1728 4.657824 CTTGGTGGCCGTCGTCGT 62.658 66.667 0.00 0.00 35.01 4.34
1673 1729 4.953868 TTGGTGGCCGTCGTCGTG 62.954 66.667 0.00 0.00 35.01 4.35
1676 1732 4.936823 GTGGCCGTCGTCGTGTGT 62.937 66.667 0.00 0.00 35.01 3.72
1677 1733 4.210093 TGGCCGTCGTCGTGTGTT 62.210 61.111 0.00 0.00 35.01 3.32
1678 1734 2.050168 GGCCGTCGTCGTGTGTTA 60.050 61.111 0.71 0.00 35.01 2.41
1679 1735 2.084681 GGCCGTCGTCGTGTGTTAG 61.085 63.158 0.71 0.00 35.01 2.34
1680 1736 2.084681 GCCGTCGTCGTGTGTTAGG 61.085 63.158 0.71 0.00 35.01 2.69
1681 1737 1.575922 CCGTCGTCGTGTGTTAGGA 59.424 57.895 0.71 0.00 35.01 2.94
1682 1738 0.169672 CCGTCGTCGTGTGTTAGGAT 59.830 55.000 0.71 0.00 35.01 3.24
1683 1739 1.401931 CCGTCGTCGTGTGTTAGGATT 60.402 52.381 0.71 0.00 35.01 3.01
1684 1740 2.322161 CGTCGTCGTGTGTTAGGATTT 58.678 47.619 0.00 0.00 0.00 2.17
1685 1741 3.491356 CGTCGTCGTGTGTTAGGATTTA 58.509 45.455 0.00 0.00 0.00 1.40
1686 1742 3.541130 CGTCGTCGTGTGTTAGGATTTAG 59.459 47.826 0.00 0.00 0.00 1.85
1687 1743 4.669965 CGTCGTCGTGTGTTAGGATTTAGA 60.670 45.833 0.00 0.00 0.00 2.10
1688 1744 5.156355 GTCGTCGTGTGTTAGGATTTAGAA 58.844 41.667 0.00 0.00 0.00 2.10
1689 1745 5.630680 GTCGTCGTGTGTTAGGATTTAGAAA 59.369 40.000 0.00 0.00 0.00 2.52
1690 1746 6.144402 GTCGTCGTGTGTTAGGATTTAGAAAA 59.856 38.462 0.00 0.00 0.00 2.29
1691 1747 6.869913 TCGTCGTGTGTTAGGATTTAGAAAAT 59.130 34.615 0.00 0.00 0.00 1.82
1692 1748 6.953743 CGTCGTGTGTTAGGATTTAGAAAATG 59.046 38.462 0.00 0.00 0.00 2.32
1693 1749 7.359765 CGTCGTGTGTTAGGATTTAGAAAATGT 60.360 37.037 0.00 0.00 0.00 2.71
1694 1750 7.744715 GTCGTGTGTTAGGATTTAGAAAATGTG 59.255 37.037 0.00 0.00 0.00 3.21
1695 1751 7.442969 TCGTGTGTTAGGATTTAGAAAATGTGT 59.557 33.333 0.00 0.00 0.00 3.72
1696 1752 7.533900 CGTGTGTTAGGATTTAGAAAATGTGTG 59.466 37.037 0.00 0.00 0.00 3.82
1697 1753 7.807907 GTGTGTTAGGATTTAGAAAATGTGTGG 59.192 37.037 0.00 0.00 0.00 4.17
1698 1754 7.504238 TGTGTTAGGATTTAGAAAATGTGTGGT 59.496 33.333 0.00 0.00 0.00 4.16
1699 1755 8.021396 GTGTTAGGATTTAGAAAATGTGTGGTC 58.979 37.037 0.00 0.00 0.00 4.02
1700 1756 5.880054 AGGATTTAGAAAATGTGTGGTCG 57.120 39.130 0.00 0.00 0.00 4.79
1701 1757 5.313712 AGGATTTAGAAAATGTGTGGTCGT 58.686 37.500 0.00 0.00 0.00 4.34
1702 1758 5.411669 AGGATTTAGAAAATGTGTGGTCGTC 59.588 40.000 0.00 0.00 0.00 4.20
1703 1759 4.718858 TTTAGAAAATGTGTGGTCGTCG 57.281 40.909 0.00 0.00 0.00 5.12
1704 1760 0.865769 AGAAAATGTGTGGTCGTCGC 59.134 50.000 0.00 0.00 0.00 5.19
1705 1761 0.110373 GAAAATGTGTGGTCGTCGCC 60.110 55.000 0.00 0.00 0.00 5.54
1706 1762 0.534203 AAAATGTGTGGTCGTCGCCT 60.534 50.000 7.14 0.00 0.00 5.52
1707 1763 1.227999 AAATGTGTGGTCGTCGCCTG 61.228 55.000 7.14 0.00 0.00 4.85
1708 1764 2.377628 AATGTGTGGTCGTCGCCTGT 62.378 55.000 7.14 0.00 0.00 4.00
1709 1765 2.279918 GTGTGGTCGTCGCCTGTT 60.280 61.111 7.14 0.00 0.00 3.16
1710 1766 2.279851 TGTGGTCGTCGCCTGTTG 60.280 61.111 7.14 0.00 0.00 3.33
1711 1767 2.028484 GTGGTCGTCGCCTGTTGA 59.972 61.111 7.14 0.00 0.00 3.18
1712 1768 1.374252 GTGGTCGTCGCCTGTTGAT 60.374 57.895 7.14 0.00 0.00 2.57
1713 1769 0.949105 GTGGTCGTCGCCTGTTGATT 60.949 55.000 7.14 0.00 0.00 2.57
1714 1770 0.604073 TGGTCGTCGCCTGTTGATTA 59.396 50.000 7.14 0.00 0.00 1.75
1715 1771 0.997196 GGTCGTCGCCTGTTGATTAC 59.003 55.000 0.00 0.00 0.00 1.89
1716 1772 1.403780 GGTCGTCGCCTGTTGATTACT 60.404 52.381 0.00 0.00 0.00 2.24
1717 1773 2.159338 GGTCGTCGCCTGTTGATTACTA 60.159 50.000 0.00 0.00 0.00 1.82
1718 1774 2.850647 GTCGTCGCCTGTTGATTACTAC 59.149 50.000 0.00 0.00 0.00 2.73
1719 1775 2.751259 TCGTCGCCTGTTGATTACTACT 59.249 45.455 0.00 0.00 0.00 2.57
1720 1776 2.852413 CGTCGCCTGTTGATTACTACTG 59.148 50.000 0.00 0.00 0.00 2.74
1721 1777 3.672511 CGTCGCCTGTTGATTACTACTGT 60.673 47.826 0.00 0.00 0.00 3.55
1722 1778 4.437794 CGTCGCCTGTTGATTACTACTGTA 60.438 45.833 0.00 0.00 0.00 2.74
1723 1779 5.589192 GTCGCCTGTTGATTACTACTGTAT 58.411 41.667 0.00 0.00 0.00 2.29
1724 1780 5.686397 GTCGCCTGTTGATTACTACTGTATC 59.314 44.000 0.00 0.00 0.00 2.24
1725 1781 5.593095 TCGCCTGTTGATTACTACTGTATCT 59.407 40.000 0.00 0.00 0.00 1.98
1726 1782 6.096423 TCGCCTGTTGATTACTACTGTATCTT 59.904 38.462 0.00 0.00 0.00 2.40
1727 1783 6.199154 CGCCTGTTGATTACTACTGTATCTTG 59.801 42.308 0.00 0.00 0.00 3.02
1728 1784 7.042335 GCCTGTTGATTACTACTGTATCTTGT 58.958 38.462 0.00 0.00 0.00 3.16
1729 1785 8.195436 GCCTGTTGATTACTACTGTATCTTGTA 58.805 37.037 0.00 0.00 0.00 2.41
1730 1786 9.737427 CCTGTTGATTACTACTGTATCTTGTAG 57.263 37.037 0.00 0.00 41.18 2.74
1731 1787 9.239002 CTGTTGATTACTACTGTATCTTGTAGC 57.761 37.037 0.00 0.00 39.60 3.58
1732 1788 7.913821 TGTTGATTACTACTGTATCTTGTAGCG 59.086 37.037 0.00 0.00 39.60 4.26
1733 1789 7.797038 TGATTACTACTGTATCTTGTAGCGA 57.203 36.000 0.00 0.00 39.60 4.93
1734 1790 8.392372 TGATTACTACTGTATCTTGTAGCGAT 57.608 34.615 0.00 0.00 39.60 4.58
1735 1791 8.290325 TGATTACTACTGTATCTTGTAGCGATG 58.710 37.037 0.00 0.00 39.60 3.84
1736 1792 5.440234 ACTACTGTATCTTGTAGCGATGG 57.560 43.478 0.00 0.00 39.60 3.51
1737 1793 4.888239 ACTACTGTATCTTGTAGCGATGGT 59.112 41.667 0.00 0.00 39.60 3.55
1738 1794 4.737855 ACTGTATCTTGTAGCGATGGTT 57.262 40.909 0.00 0.00 0.00 3.67
1739 1795 4.683832 ACTGTATCTTGTAGCGATGGTTC 58.316 43.478 0.00 0.00 0.00 3.62
1748 1804 2.892640 CGATGGTTCGCCTCTGGA 59.107 61.111 0.00 0.00 38.75 3.86
1749 1805 1.443407 CGATGGTTCGCCTCTGGAT 59.557 57.895 0.00 0.00 38.75 3.41
1750 1806 0.598680 CGATGGTTCGCCTCTGGATC 60.599 60.000 0.00 0.00 38.75 3.36
1751 1807 0.598680 GATGGTTCGCCTCTGGATCG 60.599 60.000 0.00 0.00 38.36 3.69
1752 1808 1.330655 ATGGTTCGCCTCTGGATCGT 61.331 55.000 0.00 0.00 38.36 3.73
1753 1809 1.218316 GGTTCGCCTCTGGATCGTT 59.782 57.895 0.00 0.00 0.00 3.85
1754 1810 0.806492 GGTTCGCCTCTGGATCGTTC 60.806 60.000 0.00 0.00 0.00 3.95
1755 1811 0.108804 GTTCGCCTCTGGATCGTTCA 60.109 55.000 0.00 0.00 0.00 3.18
1756 1812 0.606096 TTCGCCTCTGGATCGTTCAA 59.394 50.000 0.00 0.00 0.00 2.69
1757 1813 0.824109 TCGCCTCTGGATCGTTCAAT 59.176 50.000 0.00 0.00 0.00 2.57
1758 1814 0.933097 CGCCTCTGGATCGTTCAATG 59.067 55.000 0.00 0.00 0.00 2.82
1759 1815 1.303309 GCCTCTGGATCGTTCAATGG 58.697 55.000 0.00 0.00 0.00 3.16
1760 1816 1.134401 GCCTCTGGATCGTTCAATGGA 60.134 52.381 0.00 0.00 0.00 3.41
1761 1817 2.831333 CCTCTGGATCGTTCAATGGAG 58.169 52.381 0.00 0.00 0.00 3.86
1762 1818 2.169352 CCTCTGGATCGTTCAATGGAGT 59.831 50.000 0.00 0.00 0.00 3.85
1763 1819 3.193263 CTCTGGATCGTTCAATGGAGTG 58.807 50.000 0.00 0.00 0.00 3.51
1764 1820 2.567169 TCTGGATCGTTCAATGGAGTGT 59.433 45.455 0.00 0.00 0.00 3.55
1765 1821 3.007940 TCTGGATCGTTCAATGGAGTGTT 59.992 43.478 0.00 0.00 0.00 3.32
1766 1822 4.221924 TCTGGATCGTTCAATGGAGTGTTA 59.778 41.667 0.00 0.00 0.00 2.41
1767 1823 4.250464 TGGATCGTTCAATGGAGTGTTAC 58.750 43.478 0.00 0.00 0.00 2.50
1768 1824 4.020573 TGGATCGTTCAATGGAGTGTTACT 60.021 41.667 0.00 0.00 0.00 2.24
1769 1825 5.186215 TGGATCGTTCAATGGAGTGTTACTA 59.814 40.000 0.00 0.00 0.00 1.82
1770 1826 5.519206 GGATCGTTCAATGGAGTGTTACTAC 59.481 44.000 0.00 0.00 0.00 2.73
1771 1827 5.717078 TCGTTCAATGGAGTGTTACTACT 57.283 39.130 0.00 0.00 27.92 2.57
1772 1828 5.466819 TCGTTCAATGGAGTGTTACTACTG 58.533 41.667 0.00 0.00 27.92 2.74
1773 1829 4.091509 CGTTCAATGGAGTGTTACTACTGC 59.908 45.833 0.00 0.00 39.21 4.40
1774 1830 5.238583 GTTCAATGGAGTGTTACTACTGCT 58.761 41.667 0.00 0.00 39.46 4.24
1775 1831 5.483685 TCAATGGAGTGTTACTACTGCTT 57.516 39.130 0.00 0.00 39.46 3.91
1776 1832 5.479306 TCAATGGAGTGTTACTACTGCTTC 58.521 41.667 0.00 0.00 39.46 3.86
1777 1833 5.011635 TCAATGGAGTGTTACTACTGCTTCA 59.988 40.000 0.00 0.00 39.46 3.02
1778 1834 5.683876 ATGGAGTGTTACTACTGCTTCAT 57.316 39.130 0.00 0.00 39.46 2.57
1779 1835 5.483685 TGGAGTGTTACTACTGCTTCATT 57.516 39.130 0.00 0.00 39.46 2.57
1780 1836 5.237815 TGGAGTGTTACTACTGCTTCATTG 58.762 41.667 0.00 0.00 39.46 2.82
1781 1837 5.011635 TGGAGTGTTACTACTGCTTCATTGA 59.988 40.000 0.00 0.00 39.46 2.57
1782 1838 6.109359 GGAGTGTTACTACTGCTTCATTGAT 58.891 40.000 0.00 0.00 36.27 2.57
1783 1839 6.595716 GGAGTGTTACTACTGCTTCATTGATT 59.404 38.462 0.00 0.00 36.27 2.57
1784 1840 7.119846 GGAGTGTTACTACTGCTTCATTGATTT 59.880 37.037 0.00 0.00 36.27 2.17
1785 1841 7.810658 AGTGTTACTACTGCTTCATTGATTTG 58.189 34.615 0.00 0.00 0.00 2.32
1786 1842 7.445402 AGTGTTACTACTGCTTCATTGATTTGT 59.555 33.333 0.00 0.00 0.00 2.83
1787 1843 7.535258 GTGTTACTACTGCTTCATTGATTTGTG 59.465 37.037 0.00 0.00 0.00 3.33
1788 1844 7.443879 TGTTACTACTGCTTCATTGATTTGTGA 59.556 33.333 0.00 0.00 0.00 3.58
1789 1845 6.882610 ACTACTGCTTCATTGATTTGTGAA 57.117 33.333 0.00 0.00 33.63 3.18
1790 1846 7.458409 ACTACTGCTTCATTGATTTGTGAAT 57.542 32.000 0.00 0.00 34.18 2.57
1791 1847 7.310664 ACTACTGCTTCATTGATTTGTGAATG 58.689 34.615 0.00 0.00 34.18 2.67
1792 1848 4.927425 ACTGCTTCATTGATTTGTGAATGC 59.073 37.500 0.00 0.00 34.18 3.56
1793 1849 3.921630 TGCTTCATTGATTTGTGAATGCG 59.078 39.130 0.00 0.00 34.18 4.73
1794 1850 3.922240 GCTTCATTGATTTGTGAATGCGT 59.078 39.130 0.00 0.00 34.18 5.24
1795 1851 4.201551 GCTTCATTGATTTGTGAATGCGTG 60.202 41.667 0.00 0.00 34.18 5.34
1796 1852 4.502171 TCATTGATTTGTGAATGCGTGT 57.498 36.364 0.00 0.00 30.89 4.49
1797 1853 4.228317 TCATTGATTTGTGAATGCGTGTG 58.772 39.130 0.00 0.00 30.89 3.82
1798 1854 2.702898 TGATTTGTGAATGCGTGTGG 57.297 45.000 0.00 0.00 0.00 4.17
1799 1855 1.952990 TGATTTGTGAATGCGTGTGGT 59.047 42.857 0.00 0.00 0.00 4.16
1800 1856 2.031245 TGATTTGTGAATGCGTGTGGTC 60.031 45.455 0.00 0.00 0.00 4.02
1801 1857 1.383523 TTTGTGAATGCGTGTGGTCA 58.616 45.000 0.00 0.00 0.00 4.02
1802 1858 1.383523 TTGTGAATGCGTGTGGTCAA 58.616 45.000 0.00 0.00 0.00 3.18
1811 1867 1.981254 CGTGTGGTCAATGCATTTCC 58.019 50.000 9.83 15.29 0.00 3.13
1820 1876 3.792956 GTCAATGCATTTCCTTACGCATG 59.207 43.478 9.83 0.00 44.03 4.06
1822 1878 3.698029 ATGCATTTCCTTACGCATGTC 57.302 42.857 0.00 0.00 43.21 3.06
1844 1900 6.430925 TGTCGGATCATCTGAATTTTGTTCTT 59.569 34.615 0.00 0.00 32.84 2.52
1848 1904 7.972277 CGGATCATCTGAATTTTGTTCTTTGAT 59.028 33.333 0.00 0.00 0.00 2.57
1895 1958 2.198827 ATGGCATTTGTCGAGTGGAA 57.801 45.000 0.00 0.00 0.00 3.53
1900 1963 2.483877 GCATTTGTCGAGTGGAACATCA 59.516 45.455 0.00 0.00 44.52 3.07
1908 1971 3.258123 TCGAGTGGAACATCATCAGTTGA 59.742 43.478 0.00 0.00 44.52 3.18
1918 1981 0.667487 CATCAGTTGACCGCACGAGT 60.667 55.000 0.00 0.00 0.00 4.18
1921 1984 0.039437 CAGTTGACCGCACGAGTAGT 60.039 55.000 0.00 0.00 0.00 2.73
1930 1993 5.106197 TGACCGCACGAGTAGTAGAAATAAA 60.106 40.000 0.00 0.00 0.00 1.40
1932 1995 5.747197 ACCGCACGAGTAGTAGAAATAAATG 59.253 40.000 0.00 0.00 0.00 2.32
1936 1999 7.008901 CGCACGAGTAGTAGAAATAAATGTCAA 59.991 37.037 0.00 0.00 0.00 3.18
1946 2009 9.341899 GTAGAAATAAATGTCAAAACGAATGCT 57.658 29.630 0.00 0.00 0.00 3.79
1947 2010 8.452989 AGAAATAAATGTCAAAACGAATGCTC 57.547 30.769 0.00 0.00 0.00 4.26
1948 2011 8.081633 AGAAATAAATGTCAAAACGAATGCTCA 58.918 29.630 0.00 0.00 0.00 4.26
1949 2012 7.801547 AATAAATGTCAAAACGAATGCTCAG 57.198 32.000 0.00 0.00 0.00 3.35
1950 2013 4.836125 AATGTCAAAACGAATGCTCAGT 57.164 36.364 0.00 0.00 0.00 3.41
1951 2014 4.836125 ATGTCAAAACGAATGCTCAGTT 57.164 36.364 0.00 0.00 0.00 3.16
1952 2015 4.630894 TGTCAAAACGAATGCTCAGTTT 57.369 36.364 0.00 0.00 39.45 2.66
1953 2016 5.743026 TGTCAAAACGAATGCTCAGTTTA 57.257 34.783 0.00 0.00 37.13 2.01
1954 2017 6.125327 TGTCAAAACGAATGCTCAGTTTAA 57.875 33.333 0.00 0.00 37.13 1.52
1955 2018 6.734137 TGTCAAAACGAATGCTCAGTTTAAT 58.266 32.000 0.00 0.00 37.13 1.40
1956 2019 6.855914 TGTCAAAACGAATGCTCAGTTTAATC 59.144 34.615 0.00 0.00 37.13 1.75
1957 2020 7.078228 GTCAAAACGAATGCTCAGTTTAATCT 58.922 34.615 0.00 0.00 37.13 2.40
1958 2021 7.591426 GTCAAAACGAATGCTCAGTTTAATCTT 59.409 33.333 0.00 0.00 37.13 2.40
1968 2031 8.169977 TGCTCAGTTTAATCTTTCTGAATGTT 57.830 30.769 3.59 1.50 36.67 2.71
1991 2054 8.920665 TGTTATGTTTAATCTTTGCATTTTCCG 58.079 29.630 0.00 0.00 0.00 4.30
1992 2055 5.837586 TGTTTAATCTTTGCATTTTCCGC 57.162 34.783 0.00 0.00 0.00 5.54
1993 2056 5.292765 TGTTTAATCTTTGCATTTTCCGCA 58.707 33.333 0.00 0.00 37.68 5.69
2034 2097 0.644331 CATCGAGAAGCTGCAGTTCG 59.356 55.000 16.64 18.16 0.00 3.95
2036 2099 1.373497 CGAGAAGCTGCAGTTCGGT 60.373 57.895 16.64 3.41 0.00 4.69
2042 2105 0.320771 AGCTGCAGTTCGGTAGTTGG 60.321 55.000 16.64 0.00 0.00 3.77
2063 2126 2.856628 ATTCCGCGAGCGAGCCATA 61.857 57.895 19.72 0.00 42.83 2.74
2065 2128 2.356313 CCGCGAGCGAGCCATATT 60.356 61.111 19.72 0.00 42.83 1.28
2067 2130 1.498865 CCGCGAGCGAGCCATATTTT 61.499 55.000 19.72 0.00 42.83 1.82
2068 2131 0.111089 CGCGAGCGAGCCATATTTTC 60.111 55.000 12.58 0.00 42.83 2.29
2074 2137 4.730521 CGAGCGAGCCATATTTTCTTTTTC 59.269 41.667 0.00 0.00 0.00 2.29
2076 2139 6.272822 AGCGAGCCATATTTTCTTTTTCTT 57.727 33.333 0.00 0.00 0.00 2.52
2077 2140 6.691508 AGCGAGCCATATTTTCTTTTTCTTT 58.308 32.000 0.00 0.00 0.00 2.52
2132 2208 5.123979 GGCCTATTTCTGTTGGTTAGTTCTG 59.876 44.000 0.00 0.00 0.00 3.02
2152 2228 1.967494 GCGTTGGGCCTTTTCCGTA 60.967 57.895 4.53 0.00 34.80 4.02
2169 2294 1.069906 CGTAACAGCCAAACAGCAGAC 60.070 52.381 0.00 0.00 34.23 3.51
2187 2312 4.918201 GGCGAGCATTCCGGGGAG 62.918 72.222 0.00 0.00 0.00 4.30
2189 2314 4.918201 CGAGCATTCCGGGGAGCC 62.918 72.222 0.00 0.00 0.00 4.70
2190 2315 4.918201 GAGCATTCCGGGGAGCCG 62.918 72.222 0.00 0.00 0.00 5.52
2224 2390 4.812476 CGTTCCCCGCATCGCAGA 62.812 66.667 0.00 0.00 45.75 4.26
2225 2391 2.203070 GTTCCCCGCATCGCAGAT 60.203 61.111 0.00 0.00 45.12 2.90
2232 2398 2.965999 GCATCGCAGATCGCAGCT 60.966 61.111 9.58 0.00 45.12 4.24
2237 2403 0.385390 TCGCAGATCGCAGCTTATCA 59.615 50.000 9.58 0.00 42.60 2.15
2238 2404 1.000171 TCGCAGATCGCAGCTTATCAT 60.000 47.619 9.58 0.00 42.60 2.45
2239 2405 2.228822 TCGCAGATCGCAGCTTATCATA 59.771 45.455 9.58 0.00 42.60 2.15
2240 2406 2.597748 CGCAGATCGCAGCTTATCATAG 59.402 50.000 9.58 0.00 42.60 2.23
2241 2407 2.348059 GCAGATCGCAGCTTATCATAGC 59.652 50.000 7.22 0.00 41.79 2.97
2262 2428 6.613153 AGCTCTGTAAAGGAATTCTACACT 57.387 37.500 5.23 0.00 0.00 3.55
2274 2440 8.189119 AGGAATTCTACACTCAGATTATCCTC 57.811 38.462 5.23 0.00 0.00 3.71
2286 2452 8.154856 ACTCAGATTATCCTCACTAGTCTCTAC 58.845 40.741 0.00 0.00 0.00 2.59
2287 2453 8.270137 TCAGATTATCCTCACTAGTCTCTACT 57.730 38.462 0.00 0.00 39.91 2.57
2288 2454 8.372459 TCAGATTATCCTCACTAGTCTCTACTC 58.628 40.741 0.00 0.00 37.15 2.59
2289 2455 7.606456 CAGATTATCCTCACTAGTCTCTACTCC 59.394 44.444 0.00 0.00 37.15 3.85
2290 2456 4.717279 ATCCTCACTAGTCTCTACTCCC 57.283 50.000 0.00 0.00 37.15 4.30
2291 2457 3.738434 TCCTCACTAGTCTCTACTCCCT 58.262 50.000 0.00 0.00 37.15 4.20
2292 2458 3.712733 TCCTCACTAGTCTCTACTCCCTC 59.287 52.174 0.00 0.00 37.15 4.30
2293 2459 3.181448 CCTCACTAGTCTCTACTCCCTCC 60.181 56.522 0.00 0.00 37.15 4.30
2294 2460 2.435069 TCACTAGTCTCTACTCCCTCCG 59.565 54.545 0.00 0.00 37.15 4.63
2295 2461 2.171027 CACTAGTCTCTACTCCCTCCGT 59.829 54.545 0.00 0.00 37.15 4.69
2296 2462 2.845586 ACTAGTCTCTACTCCCTCCGTT 59.154 50.000 0.00 0.00 37.15 4.44
2297 2463 2.903375 AGTCTCTACTCCCTCCGTTT 57.097 50.000 0.00 0.00 0.00 3.60
2298 2464 2.725637 AGTCTCTACTCCCTCCGTTTC 58.274 52.381 0.00 0.00 0.00 2.78
2299 2465 2.041350 AGTCTCTACTCCCTCCGTTTCA 59.959 50.000 0.00 0.00 0.00 2.69
2300 2466 2.824341 GTCTCTACTCCCTCCGTTTCAA 59.176 50.000 0.00 0.00 0.00 2.69
2301 2467 3.257624 GTCTCTACTCCCTCCGTTTCAAA 59.742 47.826 0.00 0.00 0.00 2.69
2302 2468 3.510360 TCTCTACTCCCTCCGTTTCAAAG 59.490 47.826 0.00 0.00 0.00 2.77
2303 2469 2.565834 TCTACTCCCTCCGTTTCAAAGG 59.434 50.000 0.00 0.00 0.00 3.11
2305 2471 4.415783 CCCTCCGTTTCAAAGGGG 57.584 61.111 9.01 0.00 45.18 4.79
2306 2472 1.458927 CCCTCCGTTTCAAAGGGGT 59.541 57.895 9.01 0.00 45.18 4.95
2307 2473 0.178973 CCCTCCGTTTCAAAGGGGTT 60.179 55.000 9.01 0.00 45.18 4.11
2308 2474 1.699730 CCTCCGTTTCAAAGGGGTTT 58.300 50.000 9.01 0.00 37.06 3.27
2309 2475 2.036387 CCTCCGTTTCAAAGGGGTTTT 58.964 47.619 9.01 0.00 37.06 2.43
2310 2476 2.432874 CCTCCGTTTCAAAGGGGTTTTT 59.567 45.455 9.01 0.00 37.06 1.94
2311 2477 3.453424 CTCCGTTTCAAAGGGGTTTTTG 58.547 45.455 9.01 0.00 38.97 2.44
2312 2478 3.097614 TCCGTTTCAAAGGGGTTTTTGA 58.902 40.909 9.01 0.00 43.32 2.69
2313 2479 3.707102 TCCGTTTCAAAGGGGTTTTTGAT 59.293 39.130 9.01 0.00 44.12 2.57
2314 2480 4.162509 TCCGTTTCAAAGGGGTTTTTGATT 59.837 37.500 9.01 0.00 44.12 2.57
2315 2481 4.878971 CCGTTTCAAAGGGGTTTTTGATTT 59.121 37.500 0.44 0.00 44.12 2.17
2316 2482 5.220758 CCGTTTCAAAGGGGTTTTTGATTTG 60.221 40.000 0.44 0.00 44.12 2.32
2317 2483 5.220758 CGTTTCAAAGGGGTTTTTGATTTGG 60.221 40.000 2.43 0.00 44.12 3.28
2318 2484 4.429854 TCAAAGGGGTTTTTGATTTGGG 57.570 40.909 0.00 0.00 40.95 4.12
2319 2485 2.884012 CAAAGGGGTTTTTGATTTGGGC 59.116 45.455 0.00 0.00 39.79 5.36
2320 2486 1.813102 AGGGGTTTTTGATTTGGGCA 58.187 45.000 0.00 0.00 0.00 5.36
2321 2487 2.131023 AGGGGTTTTTGATTTGGGCAA 58.869 42.857 0.00 0.00 0.00 4.52
2322 2488 2.715880 AGGGGTTTTTGATTTGGGCAAT 59.284 40.909 0.00 0.00 0.00 3.56
2323 2489 2.819019 GGGGTTTTTGATTTGGGCAATG 59.181 45.455 0.00 0.00 0.00 2.82
2324 2490 2.228582 GGGTTTTTGATTTGGGCAATGC 59.771 45.455 0.00 0.00 0.00 3.56
2325 2491 3.148412 GGTTTTTGATTTGGGCAATGCT 58.852 40.909 4.82 0.00 0.00 3.79
2326 2492 4.322567 GGTTTTTGATTTGGGCAATGCTA 58.677 39.130 4.82 0.00 0.00 3.49
2327 2493 4.392754 GGTTTTTGATTTGGGCAATGCTAG 59.607 41.667 4.82 0.00 0.00 3.42
2328 2494 3.891422 TTTGATTTGGGCAATGCTAGG 57.109 42.857 4.82 0.00 0.00 3.02
2329 2495 1.113788 TGATTTGGGCAATGCTAGGC 58.886 50.000 4.82 0.00 0.00 3.93
2330 2496 0.031178 GATTTGGGCAATGCTAGGCG 59.969 55.000 4.82 0.00 0.00 5.52
2331 2497 2.019897 ATTTGGGCAATGCTAGGCGC 62.020 55.000 4.82 0.00 42.61 6.53
2354 2520 4.973055 CACGTTTCGGCCGGTCCA 62.973 66.667 27.83 1.61 34.01 4.02
2355 2521 4.675029 ACGTTTCGGCCGGTCCAG 62.675 66.667 27.83 15.56 34.01 3.86
2370 2536 4.473520 CAGCCCAAGCCGTCCGAT 62.474 66.667 0.00 0.00 41.25 4.18
2371 2537 4.473520 AGCCCAAGCCGTCCGATG 62.474 66.667 0.00 0.00 41.25 3.84
2374 2540 4.812476 CCAAGCCGTCCGATGCGA 62.812 66.667 0.00 0.00 0.00 5.10
2375 2541 3.257561 CAAGCCGTCCGATGCGAG 61.258 66.667 0.00 0.00 0.00 5.03
2396 2562 2.813474 CGCGCGGTTGGATCTGAA 60.813 61.111 24.84 0.00 0.00 3.02
2397 2563 2.802667 CGCGCGGTTGGATCTGAAG 61.803 63.158 24.84 0.00 0.00 3.02
2398 2564 3.093278 CGCGGTTGGATCTGAAGC 58.907 61.111 0.00 0.00 0.00 3.86
2399 2565 1.741401 CGCGGTTGGATCTGAAGCA 60.741 57.895 0.00 0.00 0.00 3.91
2400 2566 1.298157 CGCGGTTGGATCTGAAGCAA 61.298 55.000 0.00 0.00 0.00 3.91
2401 2567 0.881118 GCGGTTGGATCTGAAGCAAA 59.119 50.000 0.00 0.00 0.00 3.68
2402 2568 1.269448 GCGGTTGGATCTGAAGCAAAA 59.731 47.619 0.00 0.00 0.00 2.44
2403 2569 2.288152 GCGGTTGGATCTGAAGCAAAAA 60.288 45.455 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 9.783081 GGATAAAATAAAGGGATGCATGAAAAT 57.217 29.630 2.46 0.00 0.00 1.82
388 396 6.280855 AGGCCTTTCGTGCTTATTAAAATT 57.719 33.333 0.00 0.00 0.00 1.82
398 406 3.749981 CACAAGGCCTTTCGTGCT 58.250 55.556 17.61 0.00 0.00 4.40
411 419 4.652421 TCTTTTCTTGATTGCAGCACAA 57.348 36.364 0.00 0.00 44.01 3.33
413 421 5.803967 CCTTATCTTTTCTTGATTGCAGCAC 59.196 40.000 0.00 0.00 0.00 4.40
493 501 2.550606 TCTCGGTGTTGTTAAATGGTGC 59.449 45.455 0.00 0.00 0.00 5.01
683 691 0.891904 TGCAGGGCCCGTTTCTTTAC 60.892 55.000 18.44 0.00 0.00 2.01
840 852 0.029567 GATTCTCGAGCGACGGATGT 59.970 55.000 7.81 0.00 42.82 3.06
920 957 0.103390 TTGCGTTGTGAGTTCTCGGA 59.897 50.000 0.00 0.00 0.00 4.55
921 958 1.126846 GATTGCGTTGTGAGTTCTCGG 59.873 52.381 0.00 0.00 0.00 4.63
924 961 1.202758 TGGGATTGCGTTGTGAGTTCT 60.203 47.619 0.00 0.00 0.00 3.01
929 966 1.514678 GCTGTGGGATTGCGTTGTGA 61.515 55.000 0.00 0.00 0.00 3.58
960 997 3.002371 GGGAGGAGCTTGGAAGGG 58.998 66.667 0.00 0.00 0.00 3.95
988 1025 3.849951 GGCCATCGGAGGAAGCGA 61.850 66.667 0.00 0.00 0.00 4.93
989 1026 4.918201 GGGCCATCGGAGGAAGCG 62.918 72.222 4.39 0.00 0.00 4.68
990 1027 4.918201 CGGGCCATCGGAGGAAGC 62.918 72.222 4.39 0.00 0.00 3.86
991 1028 4.918201 GCGGGCCATCGGAGGAAG 62.918 72.222 4.39 0.00 0.00 3.46
1416 1467 2.896685 AGAGACCAGAAACAGAGAGGTG 59.103 50.000 0.00 0.00 31.57 4.00
1418 1469 2.353605 GCAGAGACCAGAAACAGAGAGG 60.354 54.545 0.00 0.00 0.00 3.69
1427 1480 1.758440 AACAGCGGCAGAGACCAGAA 61.758 55.000 1.45 0.00 0.00 3.02
1432 1485 0.671781 ACATCAACAGCGGCAGAGAC 60.672 55.000 1.45 0.00 0.00 3.36
1443 1496 2.163818 GGACACCGAGAACATCAACA 57.836 50.000 0.00 0.00 0.00 3.33
1461 1514 0.169672 ATCCTAACACACGACGACGG 59.830 55.000 12.58 3.35 44.46 4.79
1491 1544 1.571460 GCAACAGGCGACAACTCAG 59.429 57.895 0.00 0.00 0.00 3.35
1512 1565 8.466617 AACCATCACTACAAGATACTAGTAGG 57.533 38.462 8.85 2.00 39.54 3.18
1530 1586 2.236146 ACATTACAGAGGCGAACCATCA 59.764 45.455 0.00 0.00 39.06 3.07
1600 1656 1.144936 GGTTCATCAGGCCCTCTCG 59.855 63.158 0.00 0.00 0.00 4.04
1601 1657 0.107459 GTGGTTCATCAGGCCCTCTC 60.107 60.000 0.00 0.00 0.00 3.20
1602 1658 1.566298 GGTGGTTCATCAGGCCCTCT 61.566 60.000 0.00 0.00 0.00 3.69
1603 1659 1.077429 GGTGGTTCATCAGGCCCTC 60.077 63.158 0.00 0.00 0.00 4.30
1604 1660 1.542375 AGGTGGTTCATCAGGCCCT 60.542 57.895 0.00 0.00 0.00 5.19
1605 1661 1.077429 GAGGTGGTTCATCAGGCCC 60.077 63.158 0.00 0.00 0.00 5.80
1606 1662 1.077429 GGAGGTGGTTCATCAGGCC 60.077 63.158 0.00 0.00 0.00 5.19
1607 1663 1.077429 GGGAGGTGGTTCATCAGGC 60.077 63.158 0.00 0.00 0.00 4.85
1608 1664 0.254178 CTGGGAGGTGGTTCATCAGG 59.746 60.000 0.00 0.00 0.00 3.86
1609 1665 0.987294 ACTGGGAGGTGGTTCATCAG 59.013 55.000 0.00 0.00 0.00 2.90
1610 1666 0.984230 GACTGGGAGGTGGTTCATCA 59.016 55.000 0.00 0.00 0.00 3.07
1611 1667 1.208293 GAGACTGGGAGGTGGTTCATC 59.792 57.143 0.00 0.00 0.00 2.92
1612 1668 1.203364 AGAGACTGGGAGGTGGTTCAT 60.203 52.381 0.00 0.00 0.00 2.57
1613 1669 0.191064 AGAGACTGGGAGGTGGTTCA 59.809 55.000 0.00 0.00 0.00 3.18
1614 1670 0.610687 CAGAGACTGGGAGGTGGTTC 59.389 60.000 0.00 0.00 0.00 3.62
1615 1671 0.104934 ACAGAGACTGGGAGGTGGTT 60.105 55.000 0.00 0.00 35.51 3.67
1616 1672 0.104934 AACAGAGACTGGGAGGTGGT 60.105 55.000 0.00 0.00 35.51 4.16
1617 1673 0.610687 GAACAGAGACTGGGAGGTGG 59.389 60.000 0.00 0.00 35.51 4.61
1618 1674 1.548269 GAGAACAGAGACTGGGAGGTG 59.452 57.143 0.00 0.00 35.51 4.00
1619 1675 1.431243 AGAGAACAGAGACTGGGAGGT 59.569 52.381 0.00 0.00 35.51 3.85
1620 1676 1.824230 CAGAGAACAGAGACTGGGAGG 59.176 57.143 0.00 0.00 35.51 4.30
1621 1677 1.204467 GCAGAGAACAGAGACTGGGAG 59.796 57.143 0.00 0.00 35.51 4.30
1622 1678 1.261480 GCAGAGAACAGAGACTGGGA 58.739 55.000 0.00 0.00 35.51 4.37
1623 1679 0.248843 GGCAGAGAACAGAGACTGGG 59.751 60.000 0.00 0.00 35.51 4.45
1624 1680 0.108898 CGGCAGAGAACAGAGACTGG 60.109 60.000 0.00 0.00 35.51 4.00
1625 1681 0.735632 GCGGCAGAGAACAGAGACTG 60.736 60.000 0.00 0.00 37.52 3.51
1626 1682 0.897863 AGCGGCAGAGAACAGAGACT 60.898 55.000 1.45 0.00 0.00 3.24
1627 1683 0.735632 CAGCGGCAGAGAACAGAGAC 60.736 60.000 1.45 0.00 0.00 3.36
1628 1684 1.181741 ACAGCGGCAGAGAACAGAGA 61.182 55.000 1.45 0.00 0.00 3.10
1629 1685 0.320247 AACAGCGGCAGAGAACAGAG 60.320 55.000 1.45 0.00 0.00 3.35
1630 1686 0.601046 CAACAGCGGCAGAGAACAGA 60.601 55.000 1.45 0.00 0.00 3.41
1631 1687 0.601046 TCAACAGCGGCAGAGAACAG 60.601 55.000 1.45 0.00 0.00 3.16
1632 1688 0.035317 ATCAACAGCGGCAGAGAACA 59.965 50.000 1.45 0.00 0.00 3.18
1633 1689 0.445436 CATCAACAGCGGCAGAGAAC 59.555 55.000 1.45 0.00 0.00 3.01
1634 1690 0.035317 ACATCAACAGCGGCAGAGAA 59.965 50.000 1.45 0.00 0.00 2.87
1635 1691 0.035317 AACATCAACAGCGGCAGAGA 59.965 50.000 1.45 0.00 0.00 3.10
1636 1692 0.445436 GAACATCAACAGCGGCAGAG 59.555 55.000 1.45 0.00 0.00 3.35
1637 1693 0.035317 AGAACATCAACAGCGGCAGA 59.965 50.000 1.45 0.00 0.00 4.26
1638 1694 0.877071 AAGAACATCAACAGCGGCAG 59.123 50.000 1.45 0.00 0.00 4.85
1639 1695 0.592637 CAAGAACATCAACAGCGGCA 59.407 50.000 1.45 0.00 0.00 5.69
1640 1696 0.109597 CCAAGAACATCAACAGCGGC 60.110 55.000 0.00 0.00 0.00 6.53
1641 1697 1.069022 CACCAAGAACATCAACAGCGG 60.069 52.381 0.00 0.00 0.00 5.52
1642 1698 1.069022 CCACCAAGAACATCAACAGCG 60.069 52.381 0.00 0.00 0.00 5.18
1643 1699 1.336240 GCCACCAAGAACATCAACAGC 60.336 52.381 0.00 0.00 0.00 4.40
1644 1700 1.270550 GGCCACCAAGAACATCAACAG 59.729 52.381 0.00 0.00 0.00 3.16
1645 1701 1.327303 GGCCACCAAGAACATCAACA 58.673 50.000 0.00 0.00 0.00 3.33
1646 1702 0.240945 CGGCCACCAAGAACATCAAC 59.759 55.000 2.24 0.00 0.00 3.18
1647 1703 0.179004 ACGGCCACCAAGAACATCAA 60.179 50.000 2.24 0.00 0.00 2.57
1648 1704 0.605319 GACGGCCACCAAGAACATCA 60.605 55.000 2.24 0.00 0.00 3.07
1649 1705 1.635663 CGACGGCCACCAAGAACATC 61.636 60.000 2.24 0.00 0.00 3.06
1650 1706 1.671054 CGACGGCCACCAAGAACAT 60.671 57.895 2.24 0.00 0.00 2.71
1651 1707 2.280524 CGACGGCCACCAAGAACA 60.281 61.111 2.24 0.00 0.00 3.18
1652 1708 2.280592 ACGACGGCCACCAAGAAC 60.281 61.111 2.24 0.00 0.00 3.01
1653 1709 2.029964 GACGACGGCCACCAAGAA 59.970 61.111 2.24 0.00 0.00 2.52
1654 1710 4.351938 CGACGACGGCCACCAAGA 62.352 66.667 2.24 0.00 35.72 3.02
1655 1711 4.657824 ACGACGACGGCCACCAAG 62.658 66.667 12.58 0.00 44.46 3.61
1656 1712 4.953868 CACGACGACGGCCACCAA 62.954 66.667 12.58 0.00 44.46 3.67
1659 1715 4.936823 ACACACGACGACGGCCAC 62.937 66.667 12.58 0.00 44.46 5.01
1660 1716 2.736343 CTAACACACGACGACGGCCA 62.736 60.000 12.58 0.00 44.46 5.36
1661 1717 2.050168 TAACACACGACGACGGCC 60.050 61.111 12.58 0.00 44.46 6.13
1662 1718 2.084681 CCTAACACACGACGACGGC 61.085 63.158 12.58 0.00 44.46 5.68
1663 1719 0.169672 ATCCTAACACACGACGACGG 59.830 55.000 12.58 3.35 44.46 4.79
1664 1720 1.973138 AATCCTAACACACGACGACG 58.027 50.000 5.58 5.58 45.75 5.12
1665 1721 4.726416 TCTAAATCCTAACACACGACGAC 58.274 43.478 0.00 0.00 0.00 4.34
1666 1722 5.375417 TTCTAAATCCTAACACACGACGA 57.625 39.130 0.00 0.00 0.00 4.20
1667 1723 6.456447 TTTTCTAAATCCTAACACACGACG 57.544 37.500 0.00 0.00 0.00 5.12
1668 1724 7.744715 CACATTTTCTAAATCCTAACACACGAC 59.255 37.037 0.00 0.00 0.00 4.34
1669 1725 7.442969 ACACATTTTCTAAATCCTAACACACGA 59.557 33.333 0.00 0.00 0.00 4.35
1670 1726 7.533900 CACACATTTTCTAAATCCTAACACACG 59.466 37.037 0.00 0.00 0.00 4.49
1671 1727 7.807907 CCACACATTTTCTAAATCCTAACACAC 59.192 37.037 0.00 0.00 0.00 3.82
1672 1728 7.504238 ACCACACATTTTCTAAATCCTAACACA 59.496 33.333 0.00 0.00 0.00 3.72
1673 1729 7.882179 ACCACACATTTTCTAAATCCTAACAC 58.118 34.615 0.00 0.00 0.00 3.32
1674 1730 7.094975 CGACCACACATTTTCTAAATCCTAACA 60.095 37.037 0.00 0.00 0.00 2.41
1675 1731 7.094933 ACGACCACACATTTTCTAAATCCTAAC 60.095 37.037 0.00 0.00 0.00 2.34
1676 1732 6.938030 ACGACCACACATTTTCTAAATCCTAA 59.062 34.615 0.00 0.00 0.00 2.69
1677 1733 6.469410 ACGACCACACATTTTCTAAATCCTA 58.531 36.000 0.00 0.00 0.00 2.94
1678 1734 5.313712 ACGACCACACATTTTCTAAATCCT 58.686 37.500 0.00 0.00 0.00 3.24
1679 1735 5.622770 ACGACCACACATTTTCTAAATCC 57.377 39.130 0.00 0.00 0.00 3.01
1680 1736 5.313623 CGACGACCACACATTTTCTAAATC 58.686 41.667 0.00 0.00 0.00 2.17
1681 1737 4.378046 GCGACGACCACACATTTTCTAAAT 60.378 41.667 0.00 0.00 0.00 1.40
1682 1738 3.059461 GCGACGACCACACATTTTCTAAA 60.059 43.478 0.00 0.00 0.00 1.85
1683 1739 2.477375 GCGACGACCACACATTTTCTAA 59.523 45.455 0.00 0.00 0.00 2.10
1684 1740 2.063266 GCGACGACCACACATTTTCTA 58.937 47.619 0.00 0.00 0.00 2.10
1685 1741 0.865769 GCGACGACCACACATTTTCT 59.134 50.000 0.00 0.00 0.00 2.52
1686 1742 0.110373 GGCGACGACCACACATTTTC 60.110 55.000 0.00 0.00 0.00 2.29
1687 1743 0.534203 AGGCGACGACCACACATTTT 60.534 50.000 0.00 0.00 0.00 1.82
1688 1744 1.070786 AGGCGACGACCACACATTT 59.929 52.632 0.00 0.00 0.00 2.32
1689 1745 1.667830 CAGGCGACGACCACACATT 60.668 57.895 0.00 0.00 0.00 2.71
1690 1746 2.048222 CAGGCGACGACCACACAT 60.048 61.111 0.00 0.00 0.00 3.21
1691 1747 3.083848 AACAGGCGACGACCACACA 62.084 57.895 0.00 0.00 0.00 3.72
1692 1748 2.279918 AACAGGCGACGACCACAC 60.280 61.111 0.00 0.00 0.00 3.82
1693 1749 2.094757 ATCAACAGGCGACGACCACA 62.095 55.000 0.00 0.00 0.00 4.17
1694 1750 0.949105 AATCAACAGGCGACGACCAC 60.949 55.000 0.00 0.00 0.00 4.16
1695 1751 0.604073 TAATCAACAGGCGACGACCA 59.396 50.000 0.00 0.00 0.00 4.02
1696 1752 0.997196 GTAATCAACAGGCGACGACC 59.003 55.000 0.00 0.00 0.00 4.79
1697 1753 1.992170 AGTAATCAACAGGCGACGAC 58.008 50.000 0.00 0.00 0.00 4.34
1698 1754 2.751259 AGTAGTAATCAACAGGCGACGA 59.249 45.455 0.00 0.00 0.00 4.20
1699 1755 2.852413 CAGTAGTAATCAACAGGCGACG 59.148 50.000 0.00 0.00 0.00 5.12
1700 1756 3.846360 ACAGTAGTAATCAACAGGCGAC 58.154 45.455 0.00 0.00 0.00 5.19
1701 1757 5.593095 AGATACAGTAGTAATCAACAGGCGA 59.407 40.000 0.00 0.00 33.13 5.54
1702 1758 5.833082 AGATACAGTAGTAATCAACAGGCG 58.167 41.667 0.00 0.00 33.13 5.52
1703 1759 7.042335 ACAAGATACAGTAGTAATCAACAGGC 58.958 38.462 0.00 0.00 33.13 4.85
1704 1760 9.737427 CTACAAGATACAGTAGTAATCAACAGG 57.263 37.037 0.00 0.00 34.45 4.00
1705 1761 9.239002 GCTACAAGATACAGTAGTAATCAACAG 57.761 37.037 0.00 0.00 39.82 3.16
1706 1762 7.913821 CGCTACAAGATACAGTAGTAATCAACA 59.086 37.037 0.00 0.00 39.82 3.33
1707 1763 8.127327 TCGCTACAAGATACAGTAGTAATCAAC 58.873 37.037 0.00 0.00 39.82 3.18
1708 1764 8.217131 TCGCTACAAGATACAGTAGTAATCAA 57.783 34.615 0.00 0.00 39.82 2.57
1709 1765 7.797038 TCGCTACAAGATACAGTAGTAATCA 57.203 36.000 0.00 0.00 39.82 2.57
1710 1766 7.751348 CCATCGCTACAAGATACAGTAGTAATC 59.249 40.741 0.00 0.00 39.82 1.75
1711 1767 7.230913 ACCATCGCTACAAGATACAGTAGTAAT 59.769 37.037 0.00 0.00 39.82 1.89
1712 1768 6.544931 ACCATCGCTACAAGATACAGTAGTAA 59.455 38.462 0.00 0.00 39.82 2.24
1713 1769 6.060136 ACCATCGCTACAAGATACAGTAGTA 58.940 40.000 0.00 0.00 39.82 1.82
1714 1770 4.888239 ACCATCGCTACAAGATACAGTAGT 59.112 41.667 0.00 0.00 39.82 2.73
1715 1771 5.440234 ACCATCGCTACAAGATACAGTAG 57.560 43.478 0.00 0.00 40.45 2.57
1716 1772 5.505159 CGAACCATCGCTACAAGATACAGTA 60.505 44.000 0.00 0.00 42.96 2.74
1717 1773 4.683832 GAACCATCGCTACAAGATACAGT 58.316 43.478 0.00 0.00 0.00 3.55
1718 1774 3.731216 CGAACCATCGCTACAAGATACAG 59.269 47.826 0.00 0.00 42.96 2.74
1719 1775 3.702330 CGAACCATCGCTACAAGATACA 58.298 45.455 0.00 0.00 42.96 2.29
1732 1788 0.598680 CGATCCAGAGGCGAACCATC 60.599 60.000 0.00 0.00 39.06 3.51
1733 1789 1.330655 ACGATCCAGAGGCGAACCAT 61.331 55.000 0.00 0.00 39.06 3.55
1734 1790 1.541310 AACGATCCAGAGGCGAACCA 61.541 55.000 0.00 0.00 39.06 3.67
1735 1791 0.806492 GAACGATCCAGAGGCGAACC 60.806 60.000 0.00 0.00 0.00 3.62
1736 1792 0.108804 TGAACGATCCAGAGGCGAAC 60.109 55.000 0.00 0.00 0.00 3.95
1737 1793 0.606096 TTGAACGATCCAGAGGCGAA 59.394 50.000 0.00 0.00 0.00 4.70
1738 1794 0.824109 ATTGAACGATCCAGAGGCGA 59.176 50.000 0.00 0.00 0.00 5.54
1739 1795 0.933097 CATTGAACGATCCAGAGGCG 59.067 55.000 0.00 0.00 0.00 5.52
1740 1796 1.134401 TCCATTGAACGATCCAGAGGC 60.134 52.381 0.00 0.00 0.00 4.70
1741 1797 2.169352 ACTCCATTGAACGATCCAGAGG 59.831 50.000 0.00 0.00 0.00 3.69
1742 1798 3.193263 CACTCCATTGAACGATCCAGAG 58.807 50.000 0.00 0.00 0.00 3.35
1743 1799 2.567169 ACACTCCATTGAACGATCCAGA 59.433 45.455 0.00 0.00 0.00 3.86
1744 1800 2.977914 ACACTCCATTGAACGATCCAG 58.022 47.619 0.00 0.00 0.00 3.86
1745 1801 3.417069 AACACTCCATTGAACGATCCA 57.583 42.857 0.00 0.00 0.00 3.41
1746 1802 4.504858 AGTAACACTCCATTGAACGATCC 58.495 43.478 0.00 0.00 0.00 3.36
1747 1803 6.253727 CAGTAGTAACACTCCATTGAACGATC 59.746 42.308 0.00 0.00 0.00 3.69
1748 1804 6.100004 CAGTAGTAACACTCCATTGAACGAT 58.900 40.000 0.00 0.00 0.00 3.73
1749 1805 5.466819 CAGTAGTAACACTCCATTGAACGA 58.533 41.667 0.00 0.00 0.00 3.85
1750 1806 4.091509 GCAGTAGTAACACTCCATTGAACG 59.908 45.833 0.00 0.00 0.00 3.95
1751 1807 5.238583 AGCAGTAGTAACACTCCATTGAAC 58.761 41.667 0.00 0.00 0.00 3.18
1752 1808 5.483685 AGCAGTAGTAACACTCCATTGAA 57.516 39.130 0.00 0.00 0.00 2.69
1753 1809 5.011635 TGAAGCAGTAGTAACACTCCATTGA 59.988 40.000 0.00 0.00 0.00 2.57
1754 1810 5.237815 TGAAGCAGTAGTAACACTCCATTG 58.762 41.667 0.00 0.00 0.00 2.82
1755 1811 5.483685 TGAAGCAGTAGTAACACTCCATT 57.516 39.130 0.00 0.00 0.00 3.16
1756 1812 5.683876 ATGAAGCAGTAGTAACACTCCAT 57.316 39.130 0.00 0.00 0.00 3.41
1757 1813 5.011635 TCAATGAAGCAGTAGTAACACTCCA 59.988 40.000 0.00 0.00 0.00 3.86
1758 1814 5.479306 TCAATGAAGCAGTAGTAACACTCC 58.521 41.667 0.00 0.00 0.00 3.85
1759 1815 7.602517 AATCAATGAAGCAGTAGTAACACTC 57.397 36.000 0.00 0.00 0.00 3.51
1760 1816 7.445402 ACAAATCAATGAAGCAGTAGTAACACT 59.555 33.333 0.00 0.00 0.00 3.55
1761 1817 7.535258 CACAAATCAATGAAGCAGTAGTAACAC 59.465 37.037 0.00 0.00 0.00 3.32
1762 1818 7.443879 TCACAAATCAATGAAGCAGTAGTAACA 59.556 33.333 0.00 0.00 0.00 2.41
1763 1819 7.806690 TCACAAATCAATGAAGCAGTAGTAAC 58.193 34.615 0.00 0.00 0.00 2.50
1764 1820 7.977789 TCACAAATCAATGAAGCAGTAGTAA 57.022 32.000 0.00 0.00 0.00 2.24
1765 1821 7.977789 TTCACAAATCAATGAAGCAGTAGTA 57.022 32.000 0.00 0.00 31.29 1.82
1766 1822 6.882610 TTCACAAATCAATGAAGCAGTAGT 57.117 33.333 0.00 0.00 31.29 2.73
1767 1823 6.252869 GCATTCACAAATCAATGAAGCAGTAG 59.747 38.462 0.00 0.00 38.19 2.57
1768 1824 6.094719 GCATTCACAAATCAATGAAGCAGTA 58.905 36.000 0.00 0.00 38.19 2.74
1769 1825 4.927425 GCATTCACAAATCAATGAAGCAGT 59.073 37.500 0.00 0.00 38.19 4.40
1770 1826 4.031314 CGCATTCACAAATCAATGAAGCAG 59.969 41.667 0.00 0.00 38.19 4.24
1771 1827 3.921630 CGCATTCACAAATCAATGAAGCA 59.078 39.130 0.00 0.00 38.19 3.91
1772 1828 3.922240 ACGCATTCACAAATCAATGAAGC 59.078 39.130 0.00 0.00 38.19 3.86
1773 1829 4.919168 ACACGCATTCACAAATCAATGAAG 59.081 37.500 0.00 0.00 38.19 3.02
1774 1830 4.680567 CACACGCATTCACAAATCAATGAA 59.319 37.500 0.00 0.00 39.09 2.57
1775 1831 4.228317 CACACGCATTCACAAATCAATGA 58.772 39.130 0.00 0.00 32.56 2.57
1776 1832 3.365520 CCACACGCATTCACAAATCAATG 59.634 43.478 0.00 0.00 33.77 2.82
1777 1833 3.005684 ACCACACGCATTCACAAATCAAT 59.994 39.130 0.00 0.00 0.00 2.57
1778 1834 2.360483 ACCACACGCATTCACAAATCAA 59.640 40.909 0.00 0.00 0.00 2.57
1779 1835 1.952990 ACCACACGCATTCACAAATCA 59.047 42.857 0.00 0.00 0.00 2.57
1780 1836 2.031245 TGACCACACGCATTCACAAATC 60.031 45.455 0.00 0.00 0.00 2.17
1781 1837 1.952990 TGACCACACGCATTCACAAAT 59.047 42.857 0.00 0.00 0.00 2.32
1782 1838 1.383523 TGACCACACGCATTCACAAA 58.616 45.000 0.00 0.00 0.00 2.83
1783 1839 1.383523 TTGACCACACGCATTCACAA 58.616 45.000 0.00 0.00 0.00 3.33
1784 1840 1.266446 CATTGACCACACGCATTCACA 59.734 47.619 0.00 0.00 0.00 3.58
1785 1841 1.967762 CATTGACCACACGCATTCAC 58.032 50.000 0.00 0.00 0.00 3.18
1786 1842 0.240678 GCATTGACCACACGCATTCA 59.759 50.000 0.00 0.00 0.00 2.57
1787 1843 0.240678 TGCATTGACCACACGCATTC 59.759 50.000 0.00 0.00 0.00 2.67
1788 1844 0.889994 ATGCATTGACCACACGCATT 59.110 45.000 0.00 0.00 40.26 3.56
1789 1845 0.889994 AATGCATTGACCACACGCAT 59.110 45.000 12.09 0.00 44.84 4.73
1790 1846 0.672889 AAATGCATTGACCACACGCA 59.327 45.000 13.82 0.00 36.95 5.24
1791 1847 1.339711 GAAATGCATTGACCACACGC 58.660 50.000 13.82 0.00 0.00 5.34
1792 1848 1.541147 AGGAAATGCATTGACCACACG 59.459 47.619 26.74 0.00 0.00 4.49
1793 1849 3.665745 AAGGAAATGCATTGACCACAC 57.334 42.857 26.74 9.96 0.00 3.82
1794 1850 3.190327 CGTAAGGAAATGCATTGACCACA 59.810 43.478 26.74 16.41 0.00 4.17
1795 1851 3.758300 CGTAAGGAAATGCATTGACCAC 58.242 45.455 26.74 19.33 0.00 4.16
1796 1852 2.163412 GCGTAAGGAAATGCATTGACCA 59.837 45.455 26.74 12.52 38.28 4.02
1797 1853 2.163412 TGCGTAAGGAAATGCATTGACC 59.837 45.455 21.19 21.19 36.48 4.02
1798 1854 3.485947 TGCGTAAGGAAATGCATTGAC 57.514 42.857 13.82 9.07 36.48 3.18
1811 1867 2.728318 CAGATGATCCGACATGCGTAAG 59.272 50.000 8.37 0.00 38.67 2.34
1820 1876 6.428385 AGAACAAAATTCAGATGATCCGAC 57.572 37.500 0.00 0.00 0.00 4.79
1822 1878 7.307694 TCAAAGAACAAAATTCAGATGATCCG 58.692 34.615 0.00 0.00 0.00 4.18
1844 1900 4.261698 CCACATCACAGTGCTTTCAATCAA 60.262 41.667 0.00 0.00 38.18 2.57
1848 1904 2.653726 ACCACATCACAGTGCTTTCAA 58.346 42.857 0.00 0.00 38.18 2.69
1880 1936 4.392754 TGATGATGTTCCACTCGACAAATG 59.607 41.667 0.00 0.00 0.00 2.32
1881 1937 4.578871 TGATGATGTTCCACTCGACAAAT 58.421 39.130 0.00 0.00 0.00 2.32
1895 1958 1.442769 GTGCGGTCAACTGATGATGT 58.557 50.000 0.00 0.00 40.97 3.06
1900 1963 0.885879 TACTCGTGCGGTCAACTGAT 59.114 50.000 0.00 0.00 0.00 2.90
1908 1971 4.970662 TTATTTCTACTACTCGTGCGGT 57.029 40.909 0.00 0.00 0.00 5.68
1921 1984 9.554724 GAGCATTCGTTTTGACATTTATTTCTA 57.445 29.630 0.00 0.00 0.00 2.10
1930 1993 4.836125 AACTGAGCATTCGTTTTGACAT 57.164 36.364 0.00 0.00 0.00 3.06
1932 1995 7.078228 AGATTAAACTGAGCATTCGTTTTGAC 58.922 34.615 0.00 0.00 34.41 3.18
1936 1999 7.805071 CAGAAAGATTAAACTGAGCATTCGTTT 59.195 33.333 0.00 0.00 35.65 3.60
1968 2031 7.093354 TGCGGAAAATGCAAAGATTAAACATA 58.907 30.769 0.00 0.00 39.87 2.29
1998 2061 9.185192 CTTCTCGATGCAAAGATTAAACTTTTT 57.815 29.630 7.91 0.00 37.91 1.94
1999 2062 7.327032 GCTTCTCGATGCAAAGATTAAACTTTT 59.673 33.333 7.91 0.00 37.91 2.27
2000 2063 6.803807 GCTTCTCGATGCAAAGATTAAACTTT 59.196 34.615 4.98 4.98 40.16 2.66
2001 2064 6.150140 AGCTTCTCGATGCAAAGATTAAACTT 59.850 34.615 0.00 0.00 34.33 2.66
2002 2065 5.645497 AGCTTCTCGATGCAAAGATTAAACT 59.355 36.000 0.00 0.00 34.33 2.66
2003 2066 5.736358 CAGCTTCTCGATGCAAAGATTAAAC 59.264 40.000 0.00 0.00 34.33 2.01
2004 2067 5.872635 CAGCTTCTCGATGCAAAGATTAAA 58.127 37.500 0.00 0.00 34.33 1.52
2005 2068 5.475273 CAGCTTCTCGATGCAAAGATTAA 57.525 39.130 0.00 0.00 34.33 1.40
2015 2078 0.644331 CGAACTGCAGCTTCTCGATG 59.356 55.000 15.27 0.82 0.00 3.84
2016 2079 0.459237 CCGAACTGCAGCTTCTCGAT 60.459 55.000 22.32 0.00 0.00 3.59
2017 2080 1.080501 CCGAACTGCAGCTTCTCGA 60.081 57.895 22.32 0.00 0.00 4.04
2034 2097 2.469516 CGCGGAATGGCCAACTACC 61.470 63.158 10.96 10.16 35.94 3.18
2036 2099 1.153449 CTCGCGGAATGGCCAACTA 60.153 57.895 10.96 0.00 35.94 2.24
2077 2140 4.023291 AGGTGGCTCTTGAAACTCAAAAA 58.977 39.130 0.00 0.00 35.73 1.94
2082 2158 2.849294 AGAGGTGGCTCTTGAAACTC 57.151 50.000 0.00 0.00 0.00 3.01
2097 2173 4.141390 ACAGAAATAGGCCCATACAAGAGG 60.141 45.833 0.00 0.00 0.00 3.69
2103 2179 3.898482 ACCAACAGAAATAGGCCCATAC 58.102 45.455 0.00 0.00 0.00 2.39
2149 2225 1.069906 GTCTGCTGTTTGGCTGTTACG 60.070 52.381 0.00 0.00 33.78 3.18
2152 2228 1.447317 CCGTCTGCTGTTTGGCTGTT 61.447 55.000 0.00 0.00 33.78 3.16
2190 2315 4.593864 GAGCTCGATCCACCCGCC 62.594 72.222 0.00 0.00 0.00 6.13
2191 2316 4.933064 CGAGCTCGATCCACCCGC 62.933 72.222 32.06 0.00 43.02 6.13
2237 2403 8.312669 AGTGTAGAATTCCTTTACAGAGCTAT 57.687 34.615 0.65 0.00 0.00 2.97
2238 2404 7.396339 TGAGTGTAGAATTCCTTTACAGAGCTA 59.604 37.037 0.65 0.00 0.00 3.32
2239 2405 6.211584 TGAGTGTAGAATTCCTTTACAGAGCT 59.788 38.462 0.65 0.00 0.00 4.09
2240 2406 6.398918 TGAGTGTAGAATTCCTTTACAGAGC 58.601 40.000 0.65 0.00 0.00 4.09
2241 2407 7.831753 TCTGAGTGTAGAATTCCTTTACAGAG 58.168 38.462 0.65 2.31 0.00 3.35
2242 2408 7.776618 TCTGAGTGTAGAATTCCTTTACAGA 57.223 36.000 0.65 8.03 0.00 3.41
2259 2425 6.998074 AGAGACTAGTGAGGATAATCTGAGTG 59.002 42.308 0.00 0.00 0.00 3.51
2262 2428 8.270137 AGTAGAGACTAGTGAGGATAATCTGA 57.730 38.462 0.00 0.00 32.65 3.27
2270 2436 3.712733 GAGGGAGTAGAGACTAGTGAGGA 59.287 52.174 0.00 0.00 35.45 3.71
2274 2440 2.171027 ACGGAGGGAGTAGAGACTAGTG 59.829 54.545 0.00 0.00 35.45 2.74
2289 2455 1.699730 AAACCCCTTTGAAACGGAGG 58.300 50.000 0.00 0.00 0.00 4.30
2290 2456 3.131400 TCAAAAACCCCTTTGAAACGGAG 59.869 43.478 0.00 0.00 41.25 4.63
2291 2457 3.097614 TCAAAAACCCCTTTGAAACGGA 58.902 40.909 0.00 0.00 41.25 4.69
2292 2458 3.528597 TCAAAAACCCCTTTGAAACGG 57.471 42.857 0.00 0.00 41.25 4.44
2293 2459 5.220758 CCAAATCAAAAACCCCTTTGAAACG 60.221 40.000 3.13 0.00 45.75 3.60
2294 2460 5.067153 CCCAAATCAAAAACCCCTTTGAAAC 59.933 40.000 3.13 0.00 45.75 2.78
2295 2461 5.196695 CCCAAATCAAAAACCCCTTTGAAA 58.803 37.500 3.13 0.00 45.75 2.69
2296 2462 4.786425 CCCAAATCAAAAACCCCTTTGAA 58.214 39.130 3.13 0.00 45.75 2.69
2297 2463 3.434310 GCCCAAATCAAAAACCCCTTTGA 60.434 43.478 1.58 1.58 46.45 2.69
2298 2464 2.884012 GCCCAAATCAAAAACCCCTTTG 59.116 45.455 0.00 0.00 37.59 2.77
2299 2465 2.511637 TGCCCAAATCAAAAACCCCTTT 59.488 40.909 0.00 0.00 0.00 3.11
2300 2466 2.131023 TGCCCAAATCAAAAACCCCTT 58.869 42.857 0.00 0.00 0.00 3.95
2301 2467 1.813102 TGCCCAAATCAAAAACCCCT 58.187 45.000 0.00 0.00 0.00 4.79
2302 2468 2.647683 TTGCCCAAATCAAAAACCCC 57.352 45.000 0.00 0.00 0.00 4.95
2303 2469 2.228582 GCATTGCCCAAATCAAAAACCC 59.771 45.455 0.00 0.00 0.00 4.11
2304 2470 3.148412 AGCATTGCCCAAATCAAAAACC 58.852 40.909 4.70 0.00 0.00 3.27
2305 2471 4.392754 CCTAGCATTGCCCAAATCAAAAAC 59.607 41.667 4.70 0.00 0.00 2.43
2306 2472 4.577875 CCTAGCATTGCCCAAATCAAAAA 58.422 39.130 4.70 0.00 0.00 1.94
2307 2473 3.619487 GCCTAGCATTGCCCAAATCAAAA 60.619 43.478 4.70 0.00 0.00 2.44
2308 2474 2.093553 GCCTAGCATTGCCCAAATCAAA 60.094 45.455 4.70 0.00 0.00 2.69
2309 2475 1.481772 GCCTAGCATTGCCCAAATCAA 59.518 47.619 4.70 0.00 0.00 2.57
2310 2476 1.113788 GCCTAGCATTGCCCAAATCA 58.886 50.000 4.70 0.00 0.00 2.57
2311 2477 0.031178 CGCCTAGCATTGCCCAAATC 59.969 55.000 4.70 0.00 0.00 2.17
2312 2478 2.118132 CGCCTAGCATTGCCCAAAT 58.882 52.632 4.70 0.00 0.00 2.32
2313 2479 3.602103 CGCCTAGCATTGCCCAAA 58.398 55.556 4.70 0.00 0.00 3.28
2337 2503 4.973055 TGGACCGGCCGAAACGTG 62.973 66.667 30.73 11.56 40.66 4.49
2338 2504 4.675029 CTGGACCGGCCGAAACGT 62.675 66.667 30.73 16.76 40.66 3.99
2354 2520 4.473520 CATCGGACGGCTTGGGCT 62.474 66.667 0.00 0.00 38.73 5.19
2357 2523 4.812476 TCGCATCGGACGGCTTGG 62.812 66.667 0.00 0.00 0.00 3.61
2358 2524 3.257561 CTCGCATCGGACGGCTTG 61.258 66.667 0.00 0.00 0.00 4.01
2379 2545 2.802667 CTTCAGATCCAACCGCGCG 61.803 63.158 25.67 25.67 0.00 6.86
2380 2546 3.093278 CTTCAGATCCAACCGCGC 58.907 61.111 0.00 0.00 0.00 6.86
2381 2547 1.298157 TTGCTTCAGATCCAACCGCG 61.298 55.000 0.00 0.00 0.00 6.46
2382 2548 0.881118 TTTGCTTCAGATCCAACCGC 59.119 50.000 0.00 0.00 0.00 5.68
2383 2549 3.641437 TTTTTGCTTCAGATCCAACCG 57.359 42.857 0.00 0.00 0.00 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.