Multiple sequence alignment - TraesCS2B01G314700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G314700 chr2B 100.000 4954 0 0 1 4954 449843348 449838395 0.000000e+00 9149.0
1 TraesCS2B01G314700 chr2B 95.322 171 3 2 97 264 778226417 778226249 2.940000e-67 267.0
2 TraesCS2B01G314700 chr2D 94.825 2879 108 19 386 3251 378726878 378724028 0.000000e+00 4453.0
3 TraesCS2B01G314700 chr2D 93.827 810 44 6 3255 4059 378723991 378723183 0.000000e+00 1214.0
4 TraesCS2B01G314700 chr2D 86.456 539 26 18 4107 4633 378723189 378722686 9.380000e-152 547.0
5 TraesCS2B01G314700 chr2D 93.929 280 7 4 21 296 378727304 378727031 9.920000e-112 414.0
6 TraesCS2B01G314700 chr2D 100.000 34 0 0 1 34 378727334 378727301 4.140000e-06 63.9
7 TraesCS2B01G314700 chr2A 93.076 3004 144 30 297 3250 513648332 513645343 0.000000e+00 4337.0
8 TraesCS2B01G314700 chr2A 93.657 804 39 6 3255 4051 513645305 513644507 0.000000e+00 1192.0
9 TraesCS2B01G314700 chr2A 88.722 665 51 9 4092 4737 513644508 513643849 0.000000e+00 791.0
10 TraesCS2B01G314700 chr2A 90.852 317 5 5 1 296 513652756 513652443 2.150000e-108 403.0
11 TraesCS2B01G314700 chr3B 91.841 429 10 6 94 514 753113480 753113891 4.300000e-160 575.0
12 TraesCS2B01G314700 chr3B 95.215 209 5 1 550 758 753113890 753114093 4.780000e-85 326.0
13 TraesCS2B01G314700 chr3B 95.833 168 5 1 99 264 783842084 783841917 2.270000e-68 270.0
14 TraesCS2B01G314700 chr5B 90.909 429 15 5 94 514 30594832 30595244 5.600000e-154 555.0
15 TraesCS2B01G314700 chr5B 90.824 425 14 8 98 514 326666694 326666287 3.370000e-151 545.0
16 TraesCS2B01G314700 chr5B 95.215 209 5 1 550 758 30595243 30595446 4.780000e-85 326.0
17 TraesCS2B01G314700 chr5B 94.258 209 7 1 550 758 326666288 326666085 1.040000e-81 315.0
18 TraesCS2B01G314700 chr5B 95.977 174 4 1 94 264 429198705 429198878 3.780000e-71 279.0
19 TraesCS2B01G314700 chr7B 90.610 426 14 6 97 514 478898160 478897753 4.360000e-150 542.0
20 TraesCS2B01G314700 chr7B 94.258 209 7 1 550 758 478897754 478897551 1.040000e-81 315.0
21 TraesCS2B01G314700 chr7B 85.549 173 19 6 4747 4916 413577682 413577513 5.100000e-40 176.0
22 TraesCS2B01G314700 chr1B 90.750 400 13 5 122 513 35321993 35321610 3.420000e-141 512.0
23 TraesCS2B01G314700 chr1B 95.882 170 2 1 552 721 35321608 35321444 2.270000e-68 270.0
24 TraesCS2B01G314700 chr1B 84.834 211 20 11 4734 4939 196060144 196059941 8.410000e-48 202.0
25 TraesCS2B01G314700 chr6B 95.402 174 5 1 94 264 542641364 542641537 1.760000e-69 274.0
26 TraesCS2B01G314700 chr4A 95.322 171 5 1 97 264 711196254 711196084 8.170000e-68 268.0
27 TraesCS2B01G314700 chr4A 89.011 182 13 4 4741 4916 518857138 518856958 8.350000e-53 219.0
28 TraesCS2B01G314700 chr5D 89.205 176 16 3 4743 4916 512390334 512390160 3.000000e-52 217.0
29 TraesCS2B01G314700 chr1D 89.143 175 15 4 4744 4916 114212337 114212509 1.080000e-51 215.0
30 TraesCS2B01G314700 chr1D 88.485 165 14 5 4737 4898 338746786 338746624 1.410000e-45 195.0
31 TraesCS2B01G314700 chr1D 86.875 160 18 3 4741 4898 141898175 141898017 5.100000e-40 176.0
32 TraesCS2B01G314700 chr3D 84.906 212 19 11 4734 4940 116149687 116149484 8.410000e-48 202.0
33 TraesCS2B01G314700 chr7A 83.077 195 24 8 4750 4940 664694904 664694715 8.530000e-38 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G314700 chr2B 449838395 449843348 4953 True 9149.000000 9149 100.000000 1 4954 1 chr2B.!!$R1 4953
1 TraesCS2B01G314700 chr2D 378722686 378727334 4648 True 1338.380000 4453 93.807400 1 4633 5 chr2D.!!$R1 4632
2 TraesCS2B01G314700 chr2A 513643849 513648332 4483 True 2106.666667 4337 91.818333 297 4737 3 chr2A.!!$R2 4440
3 TraesCS2B01G314700 chr3B 753113480 753114093 613 False 450.500000 575 93.528000 94 758 2 chr3B.!!$F1 664
4 TraesCS2B01G314700 chr5B 30594832 30595446 614 False 440.500000 555 93.062000 94 758 2 chr5B.!!$F2 664
5 TraesCS2B01G314700 chr5B 326666085 326666694 609 True 430.000000 545 92.541000 98 758 2 chr5B.!!$R1 660
6 TraesCS2B01G314700 chr7B 478897551 478898160 609 True 428.500000 542 92.434000 97 758 2 chr7B.!!$R2 661
7 TraesCS2B01G314700 chr1B 35321444 35321993 549 True 391.000000 512 93.316000 122 721 2 chr1B.!!$R2 599

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
533 656 0.450983 GCATTTCTGTGCTCCTCTGC 59.549 55.0 0.0 0.0 41.82 4.26 F
1365 1546 0.244450 CATTTGATGCCGCCTGTTGT 59.756 50.0 0.0 0.0 0.00 3.32 F
2575 2758 0.865111 CGTGCGTTCAGTTCAATCCA 59.135 50.0 0.0 0.0 0.00 3.41 F
3267 3489 0.682852 TTGAGGTCCTAACACCACCG 59.317 55.0 0.0 0.0 39.16 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1548 1729 1.141657 TCTTTTGTCTCTGCTGCCAGT 59.858 47.619 0.00 0.00 40.09 4.00 R
2914 3098 0.038709 ACGAACTGCTCAGCTGAGAC 60.039 55.000 41.20 31.24 44.74 3.36 R
3550 3772 0.174845 TCTCCATGACGGCGTAAAGG 59.825 55.000 14.74 13.44 33.14 3.11 R
4834 5084 0.036294 GCTGGTAACCTCACCACCTC 60.036 60.000 0.00 0.00 43.76 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 1.152839 CGTCCTCCTCTCCTCTCCC 60.153 68.421 0.00 0.00 0.00 4.30
37 48 1.783979 GTCCTCCTCTCCTCTCCCATA 59.216 57.143 0.00 0.00 0.00 2.74
269 287 0.890996 CCTTGTTGGTGAGCAGGACC 60.891 60.000 0.00 0.00 0.00 4.46
271 289 2.034221 GTTGGTGAGCAGGACCCC 59.966 66.667 0.00 0.00 31.84 4.95
272 290 3.256960 TTGGTGAGCAGGACCCCC 61.257 66.667 0.00 0.00 31.84 5.40
273 291 3.810687 TTGGTGAGCAGGACCCCCT 62.811 63.158 0.00 0.00 45.74 4.79
306 324 6.584563 GTGCGATTTTATTTTAGTTGGAGCAA 59.415 34.615 0.00 0.00 0.00 3.91
463 581 7.285069 CGATTCGTTTATGTTGAGTTGTGTTA 58.715 34.615 0.00 0.00 0.00 2.41
483 605 3.741476 CAAGGCCTCCGCACTTGC 61.741 66.667 5.23 0.00 36.86 4.01
513 635 2.158623 TGGATTATCATGTGGGAGTGGC 60.159 50.000 0.00 0.00 0.00 5.01
522 645 1.675310 TGGGAGTGGCGCATTTCTG 60.675 57.895 10.83 0.00 34.12 3.02
533 656 0.450983 GCATTTCTGTGCTCCTCTGC 59.549 55.000 0.00 0.00 41.82 4.26
538 661 3.972971 CTGTGCTCCTCTGCTGGCC 62.973 68.421 0.00 0.00 0.00 5.36
539 662 4.025858 GTGCTCCTCTGCTGGCCA 62.026 66.667 4.71 4.71 0.00 5.36
540 663 3.714001 TGCTCCTCTGCTGGCCAG 61.714 66.667 29.34 29.34 43.17 4.85
541 664 4.486503 GCTCCTCTGCTGGCCAGG 62.487 72.222 33.46 18.18 42.05 4.45
542 665 2.686470 CTCCTCTGCTGGCCAGGA 60.686 66.667 33.46 30.21 42.05 3.86
543 666 3.005539 TCCTCTGCTGGCCAGGAC 61.006 66.667 33.46 18.59 42.05 3.85
544 667 3.007920 CCTCTGCTGGCCAGGACT 61.008 66.667 33.46 0.00 42.05 3.85
545 668 2.268280 CTCTGCTGGCCAGGACTG 59.732 66.667 33.46 20.21 42.05 3.51
547 670 4.340246 CTGCTGGCCAGGACTGCA 62.340 66.667 33.46 24.66 42.98 4.41
548 671 4.648626 TGCTGGCCAGGACTGCAC 62.649 66.667 33.46 15.59 40.46 4.57
556 730 1.298859 CCAGGACTGCACGCCTTAAC 61.299 60.000 0.00 0.00 30.41 2.01
629 803 9.690913 TGTACCTGTACAAGTGTAGATATTACT 57.309 33.333 7.40 0.00 42.49 2.24
774 948 4.565166 TGATAAAGTTGGTCAGTAATCGCG 59.435 41.667 0.00 0.00 0.00 5.87
807 981 2.700371 TGACATATCGGGCACTCAATCT 59.300 45.455 0.00 0.00 0.00 2.40
941 1122 5.139435 TGATCACTACTCACCTTTCACAG 57.861 43.478 0.00 0.00 0.00 3.66
954 1135 2.971660 TTCACAGTGGTCGACAAGAA 57.028 45.000 18.91 2.94 0.00 2.52
1107 1288 2.159476 TGATTGTAGTACGAGTGGCGAC 60.159 50.000 0.00 0.00 44.57 5.19
1114 1295 1.588824 TACGAGTGGCGACGGATTGT 61.589 55.000 0.00 0.00 44.57 2.71
1149 1330 2.418628 CGAGTACGACATTTGGGCAAAT 59.581 45.455 0.00 0.00 40.51 2.32
1188 1369 1.546029 GAAAGGCGGCAAAGATTCCTT 59.454 47.619 13.08 0.00 38.68 3.36
1254 1435 1.140452 TCTCAATGCCAGGCAGAGATC 59.860 52.381 23.55 0.00 43.65 2.75
1259 1440 0.321919 TGCCAGGCAGAGATCACAAC 60.322 55.000 11.22 0.00 33.32 3.32
1270 1451 3.829026 AGAGATCACAACTGCTGACACTA 59.171 43.478 0.00 0.00 0.00 2.74
1294 1475 2.289694 GCTGACTTGCAGGAAAGGACTA 60.290 50.000 1.40 0.00 45.03 2.59
1299 1480 6.721318 TGACTTGCAGGAAAGGACTATTATT 58.279 36.000 1.40 0.00 0.00 1.40
1302 1483 7.862675 ACTTGCAGGAAAGGACTATTATTAGT 58.137 34.615 1.40 0.00 41.45 2.24
1306 1487 7.093068 TGCAGGAAAGGACTATTATTAGTGACA 60.093 37.037 2.07 0.00 38.81 3.58
1308 1489 9.265901 CAGGAAAGGACTATTATTAGTGACATG 57.734 37.037 2.07 0.00 38.81 3.21
1365 1546 0.244450 CATTTGATGCCGCCTGTTGT 59.756 50.000 0.00 0.00 0.00 3.32
1548 1729 2.502947 AGCATATTGTCAGAGTCCTGCA 59.497 45.455 0.00 0.00 40.20 4.41
1581 1762 3.074538 AGACAAAAGAGGCTATTGGTGGT 59.925 43.478 0.00 0.00 0.00 4.16
1727 1908 3.499918 CAGCACCGAAAGAAGAAGAATGT 59.500 43.478 0.00 0.00 0.00 2.71
1767 1948 2.472909 GGCTCAAGAAATCCGGGCG 61.473 63.158 0.00 0.00 0.00 6.13
1929 2110 5.469421 CCCTCATGAGCATGTAGAGAAAATC 59.531 44.000 17.76 0.00 39.72 2.17
1963 2144 1.306482 AAGCTAGCAGAGGGGCAGA 60.306 57.895 18.83 0.00 35.83 4.26
2025 2206 3.834489 ACAGAGAGCCCATTACATGAG 57.166 47.619 0.00 0.00 0.00 2.90
2061 2242 2.975489 AGGTGATGTCCTGGATATGACC 59.025 50.000 26.87 26.87 37.60 4.02
2103 2284 6.158023 AGTTTCTCGTTTGGTTCTCTAGAA 57.842 37.500 0.00 0.00 0.00 2.10
2172 2353 9.072375 TGAAATACCATGATTGTCTGTTAACAA 57.928 29.630 10.03 0.00 42.92 2.83
2376 2559 6.590357 CGGTAAGCAGAAATATCATAAACCG 58.410 40.000 0.00 0.00 38.98 4.44
2455 2638 9.930693 ATTGTTCTACTGGTTTTGTTGTTTTAA 57.069 25.926 0.00 0.00 0.00 1.52
2456 2639 8.745464 TGTTCTACTGGTTTTGTTGTTTTAAC 57.255 30.769 0.00 0.00 0.00 2.01
2471 2654 6.051646 TGTTTTAACGGCAAAGAGTCTTAC 57.948 37.500 5.65 1.46 0.00 2.34
2483 2666 6.264088 CAAAGAGTCTTACCGTATACTCCAC 58.736 44.000 5.65 0.00 39.33 4.02
2506 2689 3.374220 TTTGAGCCATTGCAGTTTCAG 57.626 42.857 0.00 0.00 41.13 3.02
2513 2696 4.768968 AGCCATTGCAGTTTCAGTATTTCT 59.231 37.500 0.00 0.00 41.13 2.52
2575 2758 0.865111 CGTGCGTTCAGTTCAATCCA 59.135 50.000 0.00 0.00 0.00 3.41
2650 2833 2.354805 GGATGTTCTAGACAAGCGGGTT 60.355 50.000 0.00 0.00 42.62 4.11
2725 2908 3.609853 TGGAAAGGTTTGGATCTGATCG 58.390 45.455 11.28 0.00 0.00 3.69
2736 2919 8.836413 GGTTTGGATCTGATCGAAATGTTATTA 58.164 33.333 24.19 3.80 38.82 0.98
2826 3010 2.832129 TGGAGGAGTTTGTCGCTTCTAT 59.168 45.455 0.00 0.00 0.00 1.98
2832 3016 4.505922 GGAGTTTGTCGCTTCTATGATCAG 59.494 45.833 0.09 0.00 0.00 2.90
2851 3035 5.899120 TCAGTCAGGTACATAGAAGTCAC 57.101 43.478 0.00 0.00 0.00 3.67
3002 3186 3.582780 GGAAAAAGAAATCTGCTGCCAG 58.417 45.455 0.00 0.00 40.54 4.85
3018 3202 2.025155 GCCAGTCGGATCAAGAGTCTA 58.975 52.381 0.00 0.00 0.00 2.59
3031 3215 7.201956 GGATCAAGAGTCTACAGGTGTGATATT 60.202 40.741 0.00 0.00 0.00 1.28
3083 3268 3.066621 TGGAAGCAATTGTTATGCCGATC 59.933 43.478 7.40 0.00 44.91 3.69
3084 3269 3.550842 GGAAGCAATTGTTATGCCGATCC 60.551 47.826 7.40 0.00 44.91 3.36
3100 3285 4.601019 CCGATCCACTAATTTGTGATTGC 58.399 43.478 19.69 6.78 40.12 3.56
3101 3286 4.274069 CGATCCACTAATTTGTGATTGCG 58.726 43.478 19.69 13.38 40.12 4.85
3181 3366 2.027745 AGATTCGAGTTGCTGATGGTGT 60.028 45.455 0.00 0.00 0.00 4.16
3237 3426 6.992063 TGCAGAAGTTTCTATCCTTCATTC 57.008 37.500 0.00 0.00 39.61 2.67
3251 3440 5.547465 TCCTTCATTCGCTTAGAAAGTTGA 58.453 37.500 0.00 0.00 42.91 3.18
3252 3441 5.639506 TCCTTCATTCGCTTAGAAAGTTGAG 59.360 40.000 0.00 0.00 42.91 3.02
3265 3487 3.487120 AAGTTGAGGTCCTAACACCAC 57.513 47.619 0.00 0.00 39.16 4.16
3267 3489 0.682852 TTGAGGTCCTAACACCACCG 59.317 55.000 0.00 0.00 39.16 4.94
3275 3497 2.145536 CCTAACACCACCGTTTGTACC 58.854 52.381 0.00 0.00 0.00 3.34
3300 3522 1.792757 ATGCAGGGCCTTGGAAGTCA 61.793 55.000 14.35 3.67 0.00 3.41
3545 3767 1.448540 CCGAGAAATCTGCCAGCGT 60.449 57.895 0.00 0.00 0.00 5.07
3600 3825 1.002624 TGGGACATGGTTCTTCGCC 60.003 57.895 0.00 0.00 0.00 5.54
3711 3936 0.036952 CGATATCGGCTGCCTGGAAT 60.037 55.000 17.51 7.45 35.37 3.01
3726 3951 4.202357 GCCTGGAATATGGTGATAGTGACA 60.202 45.833 0.00 0.00 0.00 3.58
3866 4094 1.068948 TCCTCCGGAAATGTTGGGAA 58.931 50.000 5.23 0.00 0.00 3.97
3879 4107 2.091610 TGTTGGGAATGTGGTGGAAGAA 60.092 45.455 0.00 0.00 0.00 2.52
3951 4180 6.617371 TCCCTAGCTTCTGAAAAGGAGATTAT 59.383 38.462 12.35 0.00 0.00 1.28
3988 4217 2.292845 GCTTTTGTCTGCAAGCTCTCTT 59.707 45.455 0.00 0.00 41.93 2.85
3990 4219 4.735873 GCTTTTGTCTGCAAGCTCTCTTTT 60.736 41.667 0.00 0.00 41.93 2.27
4062 4291 8.263940 TGTTGATAGTTACTTGTAGCATTTCC 57.736 34.615 0.00 0.00 0.00 3.13
4063 4292 7.880713 TGTTGATAGTTACTTGTAGCATTTCCA 59.119 33.333 0.00 0.00 0.00 3.53
4064 4293 8.893727 GTTGATAGTTACTTGTAGCATTTCCAT 58.106 33.333 0.00 0.00 0.00 3.41
4065 4294 8.662781 TGATAGTTACTTGTAGCATTTCCATC 57.337 34.615 0.00 0.00 0.00 3.51
4066 4295 8.486210 TGATAGTTACTTGTAGCATTTCCATCT 58.514 33.333 0.00 0.00 0.00 2.90
4067 4296 6.992063 AGTTACTTGTAGCATTTCCATCTG 57.008 37.500 0.00 0.00 0.00 2.90
4068 4297 6.476378 AGTTACTTGTAGCATTTCCATCTGT 58.524 36.000 0.00 0.00 0.00 3.41
4069 4298 6.942576 AGTTACTTGTAGCATTTCCATCTGTT 59.057 34.615 0.00 0.00 0.00 3.16
4070 4299 5.633830 ACTTGTAGCATTTCCATCTGTTG 57.366 39.130 0.00 0.00 0.00 3.33
4071 4300 5.072741 ACTTGTAGCATTTCCATCTGTTGT 58.927 37.500 0.00 0.00 0.00 3.32
4072 4301 5.048504 ACTTGTAGCATTTCCATCTGTTGTG 60.049 40.000 0.00 0.00 0.00 3.33
4073 4302 4.650734 TGTAGCATTTCCATCTGTTGTGA 58.349 39.130 0.00 0.00 0.00 3.58
4074 4303 4.455533 TGTAGCATTTCCATCTGTTGTGAC 59.544 41.667 0.00 0.00 0.00 3.67
4075 4304 3.759581 AGCATTTCCATCTGTTGTGACT 58.240 40.909 0.00 0.00 0.00 3.41
4076 4305 4.910195 AGCATTTCCATCTGTTGTGACTA 58.090 39.130 0.00 0.00 0.00 2.59
4077 4306 5.503927 AGCATTTCCATCTGTTGTGACTAT 58.496 37.500 0.00 0.00 0.00 2.12
4078 4307 6.653020 AGCATTTCCATCTGTTGTGACTATA 58.347 36.000 0.00 0.00 0.00 1.31
4079 4308 6.765036 AGCATTTCCATCTGTTGTGACTATAG 59.235 38.462 0.00 0.00 0.00 1.31
4080 4309 6.763135 GCATTTCCATCTGTTGTGACTATAGA 59.237 38.462 6.78 0.00 0.00 1.98
4081 4310 7.042187 GCATTTCCATCTGTTGTGACTATAGAG 60.042 40.741 6.78 0.00 0.00 2.43
4082 4311 7.718334 TTTCCATCTGTTGTGACTATAGAGA 57.282 36.000 6.78 0.00 0.00 3.10
4083 4312 7.904558 TTCCATCTGTTGTGACTATAGAGAT 57.095 36.000 6.78 0.00 0.00 2.75
4084 4313 7.904558 TCCATCTGTTGTGACTATAGAGATT 57.095 36.000 6.78 0.00 0.00 2.40
4085 4314 8.311395 TCCATCTGTTGTGACTATAGAGATTT 57.689 34.615 6.78 0.00 0.00 2.17
4086 4315 9.421399 TCCATCTGTTGTGACTATAGAGATTTA 57.579 33.333 6.78 0.00 0.00 1.40
4087 4316 9.469807 CCATCTGTTGTGACTATAGAGATTTAC 57.530 37.037 6.78 0.00 0.00 2.01
4136 4365 3.630312 TGTAACCCTGTTGAAGCTGTTTC 59.370 43.478 0.00 0.00 36.29 2.78
4137 4366 1.308998 ACCCTGTTGAAGCTGTTTCG 58.691 50.000 0.00 0.00 38.71 3.46
4150 4379 2.504367 CTGTTTCGAAAGATGGTGGGT 58.496 47.619 11.66 0.00 41.60 4.51
4160 4390 5.163652 CGAAAGATGGTGGGTAAAATCCTTC 60.164 44.000 0.00 0.00 0.00 3.46
4219 4449 2.997986 CCTGATGTTTTGGCTGCATTTC 59.002 45.455 0.50 0.00 0.00 2.17
4261 4491 0.758734 CTGGTGACTGGTGAGGTGAA 59.241 55.000 0.00 0.00 0.00 3.18
4264 4494 0.394565 GTGACTGGTGAGGTGAAGCT 59.605 55.000 0.00 0.00 0.00 3.74
4281 4511 1.856265 GCTTCCCACCAGTTGCTTCG 61.856 60.000 0.00 0.00 0.00 3.79
4345 4575 3.925238 GGCTATGCGCGTTCGGTG 61.925 66.667 7.78 0.00 40.44 4.94
4366 4596 2.009774 CAGAAAGCGGTACTGGAATGG 58.990 52.381 3.34 0.00 0.00 3.16
4476 4714 2.595095 CTGCCTCCGCCCCATTTA 59.405 61.111 0.00 0.00 0.00 1.40
4487 4725 2.736192 CGCCCCATTTAAAAGTTGCAAG 59.264 45.455 0.00 0.00 0.00 4.01
4558 4796 2.394708 CTCCACACTGACGTACAACAG 58.605 52.381 12.70 12.70 39.65 3.16
4582 4822 1.069090 GCCAACAGTGAGTGACGGA 59.931 57.895 0.00 0.00 0.00 4.69
4595 4835 0.970427 TGACGGATCTGCAGGCAGTA 60.970 55.000 19.75 8.26 43.96 2.74
4598 4838 2.232452 GACGGATCTGCAGGCAGTATAT 59.768 50.000 19.75 7.35 43.96 0.86
4627 4867 4.868195 GCCTGTGCCGATGTTTTC 57.132 55.556 0.00 0.00 0.00 2.29
4629 4869 0.169009 GCCTGTGCCGATGTTTTCTC 59.831 55.000 0.00 0.00 0.00 2.87
4631 4871 1.734465 CCTGTGCCGATGTTTTCTCTC 59.266 52.381 0.00 0.00 0.00 3.20
4634 4874 3.067106 TGTGCCGATGTTTTCTCTCTTC 58.933 45.455 0.00 0.00 0.00 2.87
4636 4876 4.021456 TGTGCCGATGTTTTCTCTCTTCTA 60.021 41.667 0.00 0.00 0.00 2.10
4638 4878 5.582665 GTGCCGATGTTTTCTCTCTTCTATT 59.417 40.000 0.00 0.00 0.00 1.73
4639 4879 5.582269 TGCCGATGTTTTCTCTCTTCTATTG 59.418 40.000 0.00 0.00 0.00 1.90
4640 4880 5.812642 GCCGATGTTTTCTCTCTTCTATTGA 59.187 40.000 0.00 0.00 0.00 2.57
4641 4881 6.481644 GCCGATGTTTTCTCTCTTCTATTGAT 59.518 38.462 0.00 0.00 0.00 2.57
4642 4882 7.307101 GCCGATGTTTTCTCTCTTCTATTGATC 60.307 40.741 0.00 0.00 0.00 2.92
4644 4884 7.925483 CGATGTTTTCTCTCTTCTATTGATCCT 59.075 37.037 0.00 0.00 0.00 3.24
4645 4885 8.961294 ATGTTTTCTCTCTTCTATTGATCCTG 57.039 34.615 0.00 0.00 0.00 3.86
4649 4889 4.898265 TCTCTCTTCTATTGATCCTGTGGG 59.102 45.833 0.00 0.00 0.00 4.61
4656 4906 2.063015 TTGATCCTGTGGGGCGTGTT 62.063 55.000 0.00 0.00 34.39 3.32
4666 4916 2.251371 GGCGTGTTTGGTTCTCGC 59.749 61.111 0.00 0.00 43.70 5.03
4692 4942 0.602562 TTTTGCCTGCACAGCATACC 59.397 50.000 7.46 0.00 40.59 2.73
4693 4943 1.250154 TTTGCCTGCACAGCATACCC 61.250 55.000 7.46 0.00 40.59 3.69
4698 4948 1.895131 CCTGCACAGCATACCCTTTTT 59.105 47.619 0.00 0.00 38.13 1.94
4705 4955 5.337169 GCACAGCATACCCTTTTTAATTGGA 60.337 40.000 0.00 0.00 0.00 3.53
4709 4959 6.022958 AGCATACCCTTTTTAATTGGACCTT 58.977 36.000 0.00 0.00 0.00 3.50
4716 4966 6.946009 CCCTTTTTAATTGGACCTTACTGAGA 59.054 38.462 0.00 0.00 0.00 3.27
4750 5000 2.683211 AAAATCAAGAGGTGGCCTGT 57.317 45.000 3.32 0.00 31.76 4.00
4751 5001 2.683211 AAATCAAGAGGTGGCCTGTT 57.317 45.000 3.32 0.00 37.63 3.16
4752 5002 2.683211 AATCAAGAGGTGGCCTGTTT 57.317 45.000 3.32 0.00 34.78 2.83
4753 5003 1.915141 ATCAAGAGGTGGCCTGTTTG 58.085 50.000 3.32 2.03 34.78 2.93
4754 5004 0.178992 TCAAGAGGTGGCCTGTTTGG 60.179 55.000 3.32 0.00 34.78 3.28
4755 5005 0.468029 CAAGAGGTGGCCTGTTTGGT 60.468 55.000 3.32 0.00 34.78 3.67
4756 5006 0.261696 AAGAGGTGGCCTGTTTGGTT 59.738 50.000 3.32 0.00 33.05 3.67
4757 5007 0.468029 AGAGGTGGCCTGTTTGGTTG 60.468 55.000 3.32 0.00 38.35 3.77
4758 5008 2.087462 GAGGTGGCCTGTTTGGTTGC 62.087 60.000 3.32 0.00 38.35 4.17
4759 5009 2.421314 GTGGCCTGTTTGGTTGCC 59.579 61.111 3.32 0.00 44.27 4.52
4760 5010 2.841988 TGGCCTGTTTGGTTGCCC 60.842 61.111 3.32 0.00 43.35 5.36
4761 5011 3.989787 GGCCTGTTTGGTTGCCCG 61.990 66.667 0.00 0.00 37.94 6.13
4762 5012 4.662961 GCCTGTTTGGTTGCCCGC 62.663 66.667 0.00 0.00 38.35 6.13
4763 5013 2.912025 CCTGTTTGGTTGCCCGCT 60.912 61.111 0.00 0.00 0.00 5.52
4764 5014 2.498056 CCTGTTTGGTTGCCCGCTT 61.498 57.895 0.00 0.00 0.00 4.68
4765 5015 1.300080 CTGTTTGGTTGCCCGCTTG 60.300 57.895 0.00 0.00 0.00 4.01
4766 5016 2.661537 GTTTGGTTGCCCGCTTGC 60.662 61.111 0.00 0.00 0.00 4.01
4767 5017 2.837291 TTTGGTTGCCCGCTTGCT 60.837 55.556 0.00 0.00 0.00 3.91
4768 5018 2.430610 TTTGGTTGCCCGCTTGCTT 61.431 52.632 0.00 0.00 0.00 3.91
4769 5019 1.109920 TTTGGTTGCCCGCTTGCTTA 61.110 50.000 0.00 0.00 0.00 3.09
4770 5020 1.523154 TTGGTTGCCCGCTTGCTTAG 61.523 55.000 0.00 0.00 0.00 2.18
4771 5021 1.674322 GGTTGCCCGCTTGCTTAGA 60.674 57.895 0.00 0.00 0.00 2.10
4772 5022 1.502190 GTTGCCCGCTTGCTTAGAC 59.498 57.895 0.00 0.00 0.00 2.59
4773 5023 2.032634 TTGCCCGCTTGCTTAGACG 61.033 57.895 0.00 0.00 0.00 4.18
4774 5024 3.195698 GCCCGCTTGCTTAGACGG 61.196 66.667 11.95 11.95 40.77 4.79
4775 5025 2.577059 CCCGCTTGCTTAGACGGA 59.423 61.111 17.00 0.00 42.46 4.69
4776 5026 1.079405 CCCGCTTGCTTAGACGGAA 60.079 57.895 17.00 0.00 42.46 4.30
4777 5027 0.672401 CCCGCTTGCTTAGACGGAAA 60.672 55.000 17.00 0.00 42.46 3.13
4778 5028 0.442699 CCGCTTGCTTAGACGGAAAC 59.557 55.000 12.94 0.00 42.46 2.78
4779 5029 1.144969 CGCTTGCTTAGACGGAAACA 58.855 50.000 0.00 0.00 0.00 2.83
4780 5030 1.136336 CGCTTGCTTAGACGGAAACAC 60.136 52.381 0.00 0.00 0.00 3.32
4781 5031 1.871039 GCTTGCTTAGACGGAAACACA 59.129 47.619 0.00 0.00 0.00 3.72
4782 5032 2.289547 GCTTGCTTAGACGGAAACACAA 59.710 45.455 0.00 0.00 0.00 3.33
4783 5033 3.607078 GCTTGCTTAGACGGAAACACAAG 60.607 47.826 0.00 0.00 37.05 3.16
4784 5034 2.489971 TGCTTAGACGGAAACACAAGG 58.510 47.619 0.00 0.00 0.00 3.61
4785 5035 1.197036 GCTTAGACGGAAACACAAGGC 59.803 52.381 0.00 0.00 0.00 4.35
4786 5036 2.489971 CTTAGACGGAAACACAAGGCA 58.510 47.619 0.00 0.00 0.00 4.75
4787 5037 2.851263 TAGACGGAAACACAAGGCAT 57.149 45.000 0.00 0.00 0.00 4.40
4788 5038 1.238439 AGACGGAAACACAAGGCATG 58.762 50.000 0.00 0.00 0.00 4.06
4789 5039 0.240945 GACGGAAACACAAGGCATGG 59.759 55.000 0.00 0.00 0.00 3.66
4790 5040 0.467290 ACGGAAACACAAGGCATGGT 60.467 50.000 0.00 0.00 0.00 3.55
4791 5041 0.039256 CGGAAACACAAGGCATGGTG 60.039 55.000 3.87 3.87 40.78 4.17
4793 5043 2.235016 GGAAACACAAGGCATGGTGTA 58.765 47.619 12.72 0.00 46.82 2.90
4794 5044 2.825532 GGAAACACAAGGCATGGTGTAT 59.174 45.455 12.72 0.00 46.82 2.29
4795 5045 3.367292 GGAAACACAAGGCATGGTGTATG 60.367 47.826 12.72 0.00 46.82 2.39
4796 5046 2.877097 ACACAAGGCATGGTGTATGA 57.123 45.000 10.39 0.00 45.77 2.15
4797 5047 3.370840 ACACAAGGCATGGTGTATGAT 57.629 42.857 10.39 0.00 45.77 2.45
4798 5048 3.700538 ACACAAGGCATGGTGTATGATT 58.299 40.909 10.39 0.00 45.77 2.57
4799 5049 4.088634 ACACAAGGCATGGTGTATGATTT 58.911 39.130 10.39 0.00 45.77 2.17
4800 5050 4.158394 ACACAAGGCATGGTGTATGATTTC 59.842 41.667 10.39 0.00 45.77 2.17
4801 5051 4.158209 CACAAGGCATGGTGTATGATTTCA 59.842 41.667 0.00 0.00 39.21 2.69
4802 5052 4.957954 ACAAGGCATGGTGTATGATTTCAT 59.042 37.500 0.00 0.00 39.21 2.57
4803 5053 5.163488 ACAAGGCATGGTGTATGATTTCATG 60.163 40.000 3.30 0.00 39.21 3.07
4811 5061 4.700268 TGTATGATTTCATGCAACGCTT 57.300 36.364 8.61 0.00 44.03 4.68
4812 5062 4.413969 TGTATGATTTCATGCAACGCTTG 58.586 39.130 8.61 0.00 44.03 4.01
4813 5063 3.581024 ATGATTTCATGCAACGCTTGT 57.419 38.095 0.00 0.00 35.60 3.16
4814 5064 3.367992 TGATTTCATGCAACGCTTGTT 57.632 38.095 0.00 0.00 35.60 2.83
4815 5065 3.715495 TGATTTCATGCAACGCTTGTTT 58.285 36.364 0.00 0.00 35.60 2.83
4816 5066 4.118410 TGATTTCATGCAACGCTTGTTTT 58.882 34.783 0.00 0.00 35.60 2.43
4817 5067 4.569966 TGATTTCATGCAACGCTTGTTTTT 59.430 33.333 0.00 0.00 35.60 1.94
4818 5068 3.921969 TTCATGCAACGCTTGTTTTTG 57.078 38.095 0.00 0.00 35.60 2.44
4819 5069 2.200067 TCATGCAACGCTTGTTTTTGG 58.800 42.857 0.00 0.00 35.60 3.28
4820 5070 1.932511 CATGCAACGCTTGTTTTTGGT 59.067 42.857 0.00 0.00 32.15 3.67
4821 5071 2.941453 TGCAACGCTTGTTTTTGGTA 57.059 40.000 0.00 0.00 32.15 3.25
4822 5072 3.232213 TGCAACGCTTGTTTTTGGTAA 57.768 38.095 0.00 0.00 32.15 2.85
4823 5073 2.924290 TGCAACGCTTGTTTTTGGTAAC 59.076 40.909 0.00 0.00 32.15 2.50
4824 5074 2.283086 GCAACGCTTGTTTTTGGTAACC 59.717 45.455 0.00 0.00 32.15 2.85
4825 5075 3.776340 CAACGCTTGTTTTTGGTAACCT 58.224 40.909 0.00 0.00 32.15 3.50
4826 5076 3.703286 ACGCTTGTTTTTGGTAACCTC 57.297 42.857 0.00 0.00 0.00 3.85
4827 5077 3.284617 ACGCTTGTTTTTGGTAACCTCT 58.715 40.909 0.00 0.00 0.00 3.69
4828 5078 3.697542 ACGCTTGTTTTTGGTAACCTCTT 59.302 39.130 0.00 0.00 0.00 2.85
4829 5079 4.158949 ACGCTTGTTTTTGGTAACCTCTTT 59.841 37.500 0.00 0.00 0.00 2.52
4830 5080 4.738252 CGCTTGTTTTTGGTAACCTCTTTC 59.262 41.667 0.00 0.00 0.00 2.62
4831 5081 4.738252 GCTTGTTTTTGGTAACCTCTTTCG 59.262 41.667 0.00 0.00 0.00 3.46
4832 5082 4.904253 TGTTTTTGGTAACCTCTTTCGG 57.096 40.909 0.00 0.00 0.00 4.30
4833 5083 3.067040 TGTTTTTGGTAACCTCTTTCGGC 59.933 43.478 0.00 0.00 0.00 5.54
4834 5084 1.515081 TTTGGTAACCTCTTTCGGCG 58.485 50.000 0.00 0.00 0.00 6.46
4835 5085 0.680618 TTGGTAACCTCTTTCGGCGA 59.319 50.000 4.99 4.99 0.00 5.54
4836 5086 0.245539 TGGTAACCTCTTTCGGCGAG 59.754 55.000 10.46 0.00 0.00 5.03
4840 5090 2.125512 CCTCTTTCGGCGAGGTGG 60.126 66.667 10.46 13.30 42.47 4.61
4841 5091 2.657237 CTCTTTCGGCGAGGTGGT 59.343 61.111 10.46 0.00 0.00 4.16
4842 5092 1.738099 CTCTTTCGGCGAGGTGGTG 60.738 63.158 10.46 0.00 0.00 4.17
4843 5093 2.154798 CTCTTTCGGCGAGGTGGTGA 62.155 60.000 10.46 2.87 0.00 4.02
4844 5094 1.738099 CTTTCGGCGAGGTGGTGAG 60.738 63.158 10.46 0.00 0.00 3.51
4845 5095 3.234630 TTTCGGCGAGGTGGTGAGG 62.235 63.158 10.46 0.00 0.00 3.86
4846 5096 4.988716 TCGGCGAGGTGGTGAGGT 62.989 66.667 4.99 0.00 0.00 3.85
4847 5097 4.003788 CGGCGAGGTGGTGAGGTT 62.004 66.667 0.00 0.00 0.00 3.50
4848 5098 2.642254 CGGCGAGGTGGTGAGGTTA 61.642 63.158 0.00 0.00 0.00 2.85
4849 5099 1.079336 GGCGAGGTGGTGAGGTTAC 60.079 63.158 0.00 0.00 0.00 2.50
4850 5100 1.079336 GCGAGGTGGTGAGGTTACC 60.079 63.158 0.00 0.00 41.24 2.85
4856 5106 2.534038 TGGTGAGGTTACCAGCACA 58.466 52.632 22.30 10.65 45.46 4.57
4857 5107 0.107831 TGGTGAGGTTACCAGCACAC 59.892 55.000 22.30 16.47 45.46 3.82
4858 5108 0.107831 GGTGAGGTTACCAGCACACA 59.892 55.000 22.30 4.27 42.03 3.72
4859 5109 1.271379 GGTGAGGTTACCAGCACACAT 60.271 52.381 22.30 0.00 42.03 3.21
4860 5110 1.806542 GTGAGGTTACCAGCACACATG 59.193 52.381 18.14 0.00 40.53 3.21
4861 5111 1.271325 TGAGGTTACCAGCACACATGG 60.271 52.381 3.51 0.00 43.87 3.66
4862 5112 0.038166 AGGTTACCAGCACACATGGG 59.962 55.000 3.51 0.00 42.48 4.00
4863 5113 1.595093 GGTTACCAGCACACATGGGC 61.595 60.000 0.00 0.00 46.94 5.36
4873 5123 3.225272 CACATGGGCGTGTAGAACA 57.775 52.632 0.00 0.00 32.00 3.18
4874 5124 1.518325 CACATGGGCGTGTAGAACAA 58.482 50.000 0.00 0.00 32.00 2.83
4875 5125 1.196808 CACATGGGCGTGTAGAACAAC 59.803 52.381 0.00 0.00 32.00 3.32
4876 5126 0.802494 CATGGGCGTGTAGAACAACC 59.198 55.000 0.00 0.00 0.00 3.77
4877 5127 0.322187 ATGGGCGTGTAGAACAACCC 60.322 55.000 10.93 10.93 43.53 4.11
4878 5128 1.071814 GGGCGTGTAGAACAACCCA 59.928 57.895 12.37 0.00 43.03 4.51
4879 5129 0.535553 GGGCGTGTAGAACAACCCAA 60.536 55.000 12.37 0.00 43.03 4.12
4880 5130 1.310904 GGCGTGTAGAACAACCCAAA 58.689 50.000 0.00 0.00 0.00 3.28
4881 5131 1.265905 GGCGTGTAGAACAACCCAAAG 59.734 52.381 0.00 0.00 0.00 2.77
4882 5132 2.215196 GCGTGTAGAACAACCCAAAGA 58.785 47.619 0.00 0.00 0.00 2.52
4883 5133 2.032290 GCGTGTAGAACAACCCAAAGAC 60.032 50.000 0.00 0.00 0.00 3.01
4884 5134 3.199677 CGTGTAGAACAACCCAAAGACA 58.800 45.455 0.00 0.00 0.00 3.41
4885 5135 3.001939 CGTGTAGAACAACCCAAAGACAC 59.998 47.826 0.00 0.00 34.10 3.67
4886 5136 3.942748 GTGTAGAACAACCCAAAGACACA 59.057 43.478 0.00 0.00 36.73 3.72
4887 5137 4.035208 GTGTAGAACAACCCAAAGACACAG 59.965 45.833 0.00 0.00 36.73 3.66
4888 5138 3.644966 AGAACAACCCAAAGACACAGA 57.355 42.857 0.00 0.00 0.00 3.41
4889 5139 3.963129 AGAACAACCCAAAGACACAGAA 58.037 40.909 0.00 0.00 0.00 3.02
4890 5140 4.340617 AGAACAACCCAAAGACACAGAAA 58.659 39.130 0.00 0.00 0.00 2.52
4891 5141 4.399303 AGAACAACCCAAAGACACAGAAAG 59.601 41.667 0.00 0.00 0.00 2.62
4892 5142 3.963129 ACAACCCAAAGACACAGAAAGA 58.037 40.909 0.00 0.00 0.00 2.52
4893 5143 4.536765 ACAACCCAAAGACACAGAAAGAT 58.463 39.130 0.00 0.00 0.00 2.40
4894 5144 5.690865 ACAACCCAAAGACACAGAAAGATA 58.309 37.500 0.00 0.00 0.00 1.98
4895 5145 5.765182 ACAACCCAAAGACACAGAAAGATAG 59.235 40.000 0.00 0.00 0.00 2.08
4896 5146 4.327680 ACCCAAAGACACAGAAAGATAGC 58.672 43.478 0.00 0.00 0.00 2.97
4897 5147 4.202461 ACCCAAAGACACAGAAAGATAGCA 60.202 41.667 0.00 0.00 0.00 3.49
4898 5148 4.946157 CCCAAAGACACAGAAAGATAGCAT 59.054 41.667 0.00 0.00 0.00 3.79
4899 5149 6.115446 CCCAAAGACACAGAAAGATAGCATA 58.885 40.000 0.00 0.00 0.00 3.14
4900 5150 6.769822 CCCAAAGACACAGAAAGATAGCATAT 59.230 38.462 0.00 0.00 0.00 1.78
4901 5151 7.284034 CCCAAAGACACAGAAAGATAGCATATT 59.716 37.037 0.00 0.00 0.00 1.28
4902 5152 9.330063 CCAAAGACACAGAAAGATAGCATATTA 57.670 33.333 0.00 0.00 0.00 0.98
4905 5155 9.890629 AAGACACAGAAAGATAGCATATTAACA 57.109 29.630 0.00 0.00 0.00 2.41
4928 5178 8.420374 ACATAGTTCTAAAATACATCACCACG 57.580 34.615 0.00 0.00 0.00 4.94
4929 5179 5.796350 AGTTCTAAAATACATCACCACGC 57.204 39.130 0.00 0.00 0.00 5.34
4930 5180 5.488341 AGTTCTAAAATACATCACCACGCT 58.512 37.500 0.00 0.00 0.00 5.07
4931 5181 5.938125 AGTTCTAAAATACATCACCACGCTT 59.062 36.000 0.00 0.00 0.00 4.68
4932 5182 7.101054 AGTTCTAAAATACATCACCACGCTTA 58.899 34.615 0.00 0.00 0.00 3.09
4933 5183 7.604927 AGTTCTAAAATACATCACCACGCTTAA 59.395 33.333 0.00 0.00 0.00 1.85
4934 5184 7.534085 TCTAAAATACATCACCACGCTTAAG 57.466 36.000 0.00 0.00 0.00 1.85
4935 5185 4.616181 AAATACATCACCACGCTTAAGC 57.384 40.909 17.83 17.83 37.78 3.09
4936 5186 2.753055 TACATCACCACGCTTAAGCA 57.247 45.000 26.29 6.82 42.21 3.91
4937 5187 2.113860 ACATCACCACGCTTAAGCAT 57.886 45.000 26.29 9.61 42.21 3.79
4938 5188 3.260475 ACATCACCACGCTTAAGCATA 57.740 42.857 26.29 5.67 42.21 3.14
4939 5189 3.198068 ACATCACCACGCTTAAGCATAG 58.802 45.455 26.29 15.66 42.21 2.23
4940 5190 1.651987 TCACCACGCTTAAGCATAGC 58.348 50.000 26.29 0.29 42.21 2.97
4941 5191 1.066502 TCACCACGCTTAAGCATAGCA 60.067 47.619 26.29 3.28 42.21 3.49
4942 5192 1.328680 CACCACGCTTAAGCATAGCAG 59.671 52.381 26.29 11.72 42.21 4.24
4943 5193 1.066143 ACCACGCTTAAGCATAGCAGT 60.066 47.619 26.29 12.36 42.21 4.40
4944 5194 2.009774 CCACGCTTAAGCATAGCAGTT 58.990 47.619 26.29 0.00 42.21 3.16
4945 5195 2.420022 CCACGCTTAAGCATAGCAGTTT 59.580 45.455 26.29 0.00 42.21 2.66
4946 5196 3.119849 CCACGCTTAAGCATAGCAGTTTT 60.120 43.478 26.29 0.00 42.21 2.43
4947 5197 3.848019 CACGCTTAAGCATAGCAGTTTTG 59.152 43.478 26.29 8.44 42.21 2.44
4948 5198 3.751175 ACGCTTAAGCATAGCAGTTTTGA 59.249 39.130 26.29 0.00 42.21 2.69
4949 5199 4.215399 ACGCTTAAGCATAGCAGTTTTGAA 59.785 37.500 26.29 0.00 42.21 2.69
4950 5200 4.790140 CGCTTAAGCATAGCAGTTTTGAAG 59.210 41.667 26.29 1.13 42.21 3.02
4951 5201 4.560427 GCTTAAGCATAGCAGTTTTGAAGC 59.440 41.667 22.59 0.00 41.59 3.86
4952 5202 5.702865 CTTAAGCATAGCAGTTTTGAAGCA 58.297 37.500 0.00 0.00 0.00 3.91
4953 5203 4.589216 AAGCATAGCAGTTTTGAAGCAA 57.411 36.364 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
271 289 1.577328 AAAATCGCACAGCACCGAGG 61.577 55.000 0.00 0.00 36.86 4.63
272 290 1.075542 TAAAATCGCACAGCACCGAG 58.924 50.000 0.00 0.00 36.86 4.63
273 291 1.732941 ATAAAATCGCACAGCACCGA 58.267 45.000 0.00 0.00 37.91 4.69
281 299 6.090129 TGCTCCAACTAAAATAAAATCGCAC 58.910 36.000 0.00 0.00 0.00 5.34
306 324 4.232354 TCCCTCTAGCTTAACTCCTAACCT 59.768 45.833 0.00 0.00 0.00 3.50
463 581 2.606587 AAGTGCGGAGGCCTTGGAT 61.607 57.895 6.77 0.00 38.85 3.41
483 605 5.449041 CCCACATGATAATCCAACGAAACAG 60.449 44.000 0.00 0.00 0.00 3.16
522 645 3.972971 CTGGCCAGCAGAGGAGCAC 62.973 68.421 22.33 0.00 36.85 4.40
538 661 1.298859 GGTTAAGGCGTGCAGTCCTG 61.299 60.000 7.39 0.00 32.00 3.86
539 662 1.003718 GGTTAAGGCGTGCAGTCCT 60.004 57.895 0.96 0.96 0.00 3.85
540 663 1.003718 AGGTTAAGGCGTGCAGTCC 60.004 57.895 0.00 0.00 0.00 3.85
541 664 0.320421 TGAGGTTAAGGCGTGCAGTC 60.320 55.000 0.00 0.00 0.00 3.51
542 665 0.320771 CTGAGGTTAAGGCGTGCAGT 60.321 55.000 0.00 0.00 0.00 4.40
543 666 0.320771 ACTGAGGTTAAGGCGTGCAG 60.321 55.000 0.00 0.00 0.00 4.41
544 667 0.107831 AACTGAGGTTAAGGCGTGCA 59.892 50.000 0.00 0.00 33.39 4.57
545 668 1.069227 CAAACTGAGGTTAAGGCGTGC 60.069 52.381 0.00 0.00 34.90 5.34
547 670 1.235724 GCAAACTGAGGTTAAGGCGT 58.764 50.000 0.00 0.00 34.90 5.68
548 671 0.521735 GGCAAACTGAGGTTAAGGCG 59.478 55.000 0.00 0.00 34.90 5.52
556 730 0.538057 TGCAAGAGGGCAAACTGAGG 60.538 55.000 0.00 0.00 41.65 3.86
628 802 9.669353 GATGGTATAACAGCAACAATCATAAAG 57.331 33.333 0.00 0.00 38.36 1.85
629 803 8.341903 CGATGGTATAACAGCAACAATCATAAA 58.658 33.333 6.86 0.00 38.36 1.40
767 941 3.866910 GTCAAGTAATTGTCCCGCGATTA 59.133 43.478 8.23 0.00 33.44 1.75
774 948 4.755123 CCCGATATGTCAAGTAATTGTCCC 59.245 45.833 2.43 0.00 0.00 4.46
807 981 6.035542 GGAAATGAACTGAACGCAAAAGAAAA 59.964 34.615 0.00 0.00 0.00 2.29
941 1122 2.128035 CACAGAGTTCTTGTCGACCAC 58.872 52.381 14.12 4.68 0.00 4.16
954 1135 2.808543 GAGAAAACAATCGGCACAGAGT 59.191 45.455 0.00 0.00 0.00 3.24
1114 1295 2.094390 CGTACTCGAATTCCCTTGGTGA 60.094 50.000 0.00 0.00 39.71 4.02
1149 1330 5.241506 CCTTTCTTTAACACTCATTGGCTCA 59.758 40.000 0.00 0.00 0.00 4.26
1188 1369 2.175499 GTCATCCAATCCCATTCCCTCA 59.825 50.000 0.00 0.00 0.00 3.86
1234 1415 1.140452 GATCTCTGCCTGGCATTGAGA 59.860 52.381 30.90 30.90 41.61 3.27
1254 1435 1.528586 GCACTAGTGTCAGCAGTTGTG 59.471 52.381 23.44 10.89 46.81 3.33
1259 1440 1.271934 AGTCAGCACTAGTGTCAGCAG 59.728 52.381 23.44 6.84 0.00 4.24
1270 1451 1.602311 CTTTCCTGCAAGTCAGCACT 58.398 50.000 0.00 0.00 41.50 4.40
1294 1475 8.109634 ACCCAAAGAAGACATGTCACTAATAAT 58.890 33.333 27.02 8.17 0.00 1.28
1299 1480 4.974645 ACCCAAAGAAGACATGTCACTA 57.025 40.909 27.02 0.00 0.00 2.74
1302 1483 4.163441 TGAACCCAAAGAAGACATGTCA 57.837 40.909 27.02 0.00 0.00 3.58
1306 1487 7.127955 AGGTATAGATGAACCCAAAGAAGACAT 59.872 37.037 0.00 0.00 36.34 3.06
1308 1489 6.763610 CAGGTATAGATGAACCCAAAGAAGAC 59.236 42.308 0.00 0.00 36.34 3.01
1362 1543 6.630131 TCCACTATCCAGATCCCTTATACAA 58.370 40.000 0.00 0.00 0.00 2.41
1365 1546 7.544650 TCTTTCCACTATCCAGATCCCTTATA 58.455 38.462 0.00 0.00 0.00 0.98
1548 1729 1.141657 TCTTTTGTCTCTGCTGCCAGT 59.858 47.619 0.00 0.00 40.09 4.00
1555 1736 3.376546 CCAATAGCCTCTTTTGTCTCTGC 59.623 47.826 0.00 0.00 0.00 4.26
1561 1742 3.525800 ACCACCAATAGCCTCTTTTGT 57.474 42.857 0.00 0.00 0.00 2.83
1581 1762 9.912634 CACAAGCTTTTGATATCCTTTTTCTTA 57.087 29.630 6.78 0.00 0.00 2.10
1727 1908 4.021104 CCATATAGACGGCAGAGAATTCCA 60.021 45.833 0.65 0.00 0.00 3.53
1751 1932 1.745115 TGCGCCCGGATTTCTTGAG 60.745 57.895 0.73 0.00 0.00 3.02
1767 1948 5.600908 TCACTCTAATTAAACCGTTGTGC 57.399 39.130 0.00 0.00 0.00 4.57
2025 2206 3.275617 TCACCTGTATGGCCATGTAAC 57.724 47.619 29.04 18.75 40.22 2.50
2061 2242 6.591834 AGAAACTTACATCTGAATTCGACCAG 59.408 38.462 0.04 0.00 0.00 4.00
2103 2284 8.187913 AGTATGAGCATGAGTAATGTGATAGT 57.812 34.615 0.00 0.00 38.65 2.12
2213 2396 9.506018 AAGGTAAGCAATTAAGCAAATGAAAAT 57.494 25.926 0.00 0.00 36.85 1.82
2216 2399 7.665690 TGAAGGTAAGCAATTAAGCAAATGAA 58.334 30.769 0.00 0.00 36.85 2.57
2217 2400 7.225784 TGAAGGTAAGCAATTAAGCAAATGA 57.774 32.000 0.00 0.00 36.85 2.57
2376 2559 3.374745 CCATCAAAAGCACACAACAGTC 58.625 45.455 0.00 0.00 0.00 3.51
2455 2638 3.509388 CGGTAAGACTCTTTGCCGT 57.491 52.632 18.75 0.00 46.78 5.68
2471 2654 3.560068 GGCTCAAAATGTGGAGTATACGG 59.440 47.826 0.00 0.00 33.66 4.02
2483 2666 4.059511 TGAAACTGCAATGGCTCAAAATG 58.940 39.130 0.00 0.00 41.91 2.32
2506 2689 8.779354 AGTCAAGTTCTTATCCACAGAAATAC 57.221 34.615 0.00 0.00 31.98 1.89
2513 2696 6.187727 AGGAAAGTCAAGTTCTTATCCACA 57.812 37.500 0.00 0.00 31.30 4.17
2650 2833 1.278985 CTGGTATCAGCCCAGTTGACA 59.721 52.381 0.00 0.00 43.73 3.58
2826 3010 6.095580 GTGACTTCTATGTACCTGACTGATCA 59.904 42.308 0.00 0.00 0.00 2.92
2832 3016 4.463186 AGTGGTGACTTCTATGTACCTGAC 59.537 45.833 0.00 0.00 32.68 3.51
2914 3098 0.038709 ACGAACTGCTCAGCTGAGAC 60.039 55.000 41.20 31.24 44.74 3.36
2939 3123 4.021104 TGTCTAGTTGGATGTCTTCACCTG 60.021 45.833 0.00 0.00 0.00 4.00
2973 3157 4.390909 GCAGATTTCTTTTTCCCTTGCATG 59.609 41.667 0.00 0.00 0.00 4.06
3002 3186 3.018149 ACCTGTAGACTCTTGATCCGAC 58.982 50.000 0.00 0.00 0.00 4.79
3018 3202 3.966979 TCATGGCAAATATCACACCTGT 58.033 40.909 0.00 0.00 0.00 4.00
3058 3243 3.993081 CGGCATAACAATTGCTTCCAAAA 59.007 39.130 5.05 0.00 40.03 2.44
3067 3252 5.749596 TTAGTGGATCGGCATAACAATTG 57.250 39.130 3.24 3.24 0.00 2.32
3083 3268 4.685169 AGTCGCAATCACAAATTAGTGG 57.315 40.909 0.00 0.00 39.93 4.00
3084 3269 4.853196 CCAAGTCGCAATCACAAATTAGTG 59.147 41.667 0.00 0.00 40.85 2.74
3100 3285 3.994392 ACTTGTACATAACTGCCAAGTCG 59.006 43.478 0.00 0.00 40.83 4.18
3101 3286 4.994852 TCACTTGTACATAACTGCCAAGTC 59.005 41.667 0.00 0.00 41.89 3.01
3181 3366 8.398878 ACCTTTAAACTTTTGGACGATATCAA 57.601 30.769 3.12 0.00 0.00 2.57
3226 3415 7.327975 TCAACTTTCTAAGCGAATGAAGGATA 58.672 34.615 0.00 0.00 32.67 2.59
3237 3426 3.320673 AGGACCTCAACTTTCTAAGCG 57.679 47.619 0.00 0.00 0.00 4.68
3251 3440 1.134228 AAACGGTGGTGTTAGGACCT 58.866 50.000 0.00 0.00 36.88 3.85
3252 3441 1.232119 CAAACGGTGGTGTTAGGACC 58.768 55.000 0.00 0.00 36.43 4.46
3265 3487 2.339418 TGCATCGTAAGGTACAAACGG 58.661 47.619 12.14 1.64 38.83 4.44
3267 3489 2.676342 CCCTGCATCGTAAGGTACAAAC 59.324 50.000 0.00 0.00 38.47 2.93
3275 3497 1.097547 CCAAGGCCCTGCATCGTAAG 61.098 60.000 0.00 0.00 0.00 2.34
3489 3711 0.393944 CATGCCTGTCTGGATGCACT 60.394 55.000 0.00 0.00 36.41 4.40
3517 3739 1.706287 GATTTCTCGGTCAAGCGGGC 61.706 60.000 1.41 0.00 0.00 6.13
3526 3748 1.448540 CGCTGGCAGATTTCTCGGT 60.449 57.895 20.86 0.00 0.00 4.69
3550 3772 0.174845 TCTCCATGACGGCGTAAAGG 59.825 55.000 14.74 13.44 33.14 3.11
3600 3825 1.455217 AGACCCCCTCATACCGTCG 60.455 63.158 0.00 0.00 0.00 5.12
3711 3936 3.288092 ACTCGCTGTCACTATCACCATA 58.712 45.455 0.00 0.00 0.00 2.74
3741 3966 0.544357 TGTGGAAGGACCGGATCACT 60.544 55.000 9.46 0.00 42.61 3.41
3813 4041 3.253677 ACAACTCAAGGTCGTCAGTAGAG 59.746 47.826 0.00 0.00 0.00 2.43
3857 4085 2.109834 TCTTCCACCACATTCCCAACAT 59.890 45.455 0.00 0.00 0.00 2.71
3866 4094 2.091333 ACCAACCTTTCTTCCACCACAT 60.091 45.455 0.00 0.00 0.00 3.21
3951 4180 2.574006 AAGCAAGCATCTCCACTGAA 57.426 45.000 0.00 0.00 0.00 3.02
3996 4225 2.494059 TGAGGCCTTTTCGTGAAGAAG 58.506 47.619 6.77 0.00 40.40 2.85
4004 4233 3.059665 GCAACAATTTTGAGGCCTTTTCG 60.060 43.478 6.77 0.00 0.00 3.46
4042 4271 8.267894 ACAGATGGAAATGCTACAAGTAACTAT 58.732 33.333 0.00 0.00 0.00 2.12
4048 4277 5.048504 CACAACAGATGGAAATGCTACAAGT 60.049 40.000 0.00 0.00 0.00 3.16
4049 4278 5.181811 TCACAACAGATGGAAATGCTACAAG 59.818 40.000 0.00 0.00 0.00 3.16
4050 4279 5.048782 GTCACAACAGATGGAAATGCTACAA 60.049 40.000 0.00 0.00 0.00 2.41
4052 4281 4.697352 AGTCACAACAGATGGAAATGCTAC 59.303 41.667 0.00 0.00 0.00 3.58
4053 4282 4.910195 AGTCACAACAGATGGAAATGCTA 58.090 39.130 0.00 0.00 0.00 3.49
4054 4283 3.759581 AGTCACAACAGATGGAAATGCT 58.240 40.909 0.00 0.00 0.00 3.79
4055 4284 5.824904 ATAGTCACAACAGATGGAAATGC 57.175 39.130 0.00 0.00 0.00 3.56
4056 4285 8.200120 TCTCTATAGTCACAACAGATGGAAATG 58.800 37.037 0.00 0.00 0.00 2.32
4057 4286 8.311395 TCTCTATAGTCACAACAGATGGAAAT 57.689 34.615 0.00 0.00 0.00 2.17
4058 4287 7.718334 TCTCTATAGTCACAACAGATGGAAA 57.282 36.000 0.00 0.00 0.00 3.13
4059 4288 7.904558 ATCTCTATAGTCACAACAGATGGAA 57.095 36.000 0.00 0.00 0.00 3.53
4060 4289 7.904558 AATCTCTATAGTCACAACAGATGGA 57.095 36.000 0.00 0.00 0.00 3.41
4061 4290 9.469807 GTAAATCTCTATAGTCACAACAGATGG 57.530 37.037 0.00 0.00 0.00 3.51
4104 4333 6.308015 TCAACAGGGTTACATATGCTAGTT 57.692 37.500 1.58 0.00 0.00 2.24
4136 4365 4.270008 AGGATTTTACCCACCATCTTTCG 58.730 43.478 0.00 0.00 0.00 3.46
4137 4366 5.952347 AGAAGGATTTTACCCACCATCTTTC 59.048 40.000 0.00 0.00 33.87 2.62
4160 4390 6.964131 TGGTCTTCCAAGAGTGAAATACACAG 60.964 42.308 0.00 0.00 45.02 3.66
4219 4449 3.391506 TGACTGACATGAACTGGACTG 57.608 47.619 0.00 0.00 0.00 3.51
4261 4491 0.538287 GAAGCAACTGGTGGGAAGCT 60.538 55.000 0.00 0.00 0.00 3.74
4264 4494 0.250295 CTCGAAGCAACTGGTGGGAA 60.250 55.000 0.00 0.00 0.00 3.97
4345 4575 1.398390 CATTCCAGTACCGCTTTCTGC 59.602 52.381 0.00 0.00 38.57 4.26
4376 4614 2.031120 CTTTTCCTGCCACCAACTCAA 58.969 47.619 0.00 0.00 0.00 3.02
4487 4725 1.061131 CGTCATCAGGAACGTGCAATC 59.939 52.381 0.00 0.00 0.00 2.67
4558 4796 0.886490 CACTCACTGTTGGCACCCTC 60.886 60.000 0.00 0.00 0.00 4.30
4582 4822 6.153340 ACAAACAAAATATACTGCCTGCAGAT 59.847 34.615 24.88 15.32 46.30 2.90
4595 4835 3.556843 GCACAGGCCCACAAACAAAATAT 60.557 43.478 0.00 0.00 0.00 1.28
4598 4838 0.107945 GCACAGGCCCACAAACAAAA 60.108 50.000 0.00 0.00 0.00 2.44
4618 4858 7.925483 AGGATCAATAGAAGAGAGAAAACATCG 59.075 37.037 0.00 0.00 0.00 3.84
4627 4867 4.040217 CCCCACAGGATCAATAGAAGAGAG 59.960 50.000 0.00 0.00 38.24 3.20
4629 4869 3.495806 GCCCCACAGGATCAATAGAAGAG 60.496 52.174 0.00 0.00 38.24 2.85
4631 4871 2.808202 CGCCCCACAGGATCAATAGAAG 60.808 54.545 0.00 0.00 38.24 2.85
4634 4874 0.469917 ACGCCCCACAGGATCAATAG 59.530 55.000 0.00 0.00 38.24 1.73
4636 4876 1.077501 CACGCCCCACAGGATCAAT 60.078 57.895 0.00 0.00 38.24 2.57
4638 4878 2.063015 AAACACGCCCCACAGGATCA 62.063 55.000 0.00 0.00 38.24 2.92
4639 4879 1.303317 AAACACGCCCCACAGGATC 60.303 57.895 0.00 0.00 38.24 3.36
4640 4880 1.603455 CAAACACGCCCCACAGGAT 60.603 57.895 0.00 0.00 38.24 3.24
4641 4881 2.203280 CAAACACGCCCCACAGGA 60.203 61.111 0.00 0.00 38.24 3.86
4642 4882 3.294493 CCAAACACGCCCCACAGG 61.294 66.667 0.00 0.00 39.47 4.00
4644 4884 2.043852 AACCAAACACGCCCCACA 60.044 55.556 0.00 0.00 0.00 4.17
4645 4885 1.792118 GAGAACCAAACACGCCCCAC 61.792 60.000 0.00 0.00 0.00 4.61
4649 4889 2.251371 GCGAGAACCAAACACGCC 59.749 61.111 0.00 0.00 40.26 5.68
4656 4906 1.388547 AAAGTTGCTGCGAGAACCAA 58.611 45.000 0.00 0.00 0.00 3.67
4684 4934 5.422012 AGGTCCAATTAAAAAGGGTATGCTG 59.578 40.000 0.00 0.00 0.00 4.41
4692 4942 7.996098 TCTCAGTAAGGTCCAATTAAAAAGG 57.004 36.000 0.00 0.00 0.00 3.11
4733 4983 2.242043 CAAACAGGCCACCTCTTGATT 58.758 47.619 5.01 0.00 29.62 2.57
4737 4987 0.261696 AACCAAACAGGCCACCTCTT 59.738 50.000 5.01 0.00 43.14 2.85
4738 4988 0.468029 CAACCAAACAGGCCACCTCT 60.468 55.000 5.01 0.00 43.14 3.69
4739 4989 2.041153 CAACCAAACAGGCCACCTC 58.959 57.895 5.01 0.00 43.14 3.85
4740 4990 2.133641 GCAACCAAACAGGCCACCT 61.134 57.895 5.01 0.00 43.14 4.00
4741 4991 2.421314 GCAACCAAACAGGCCACC 59.579 61.111 5.01 0.00 43.14 4.61
4742 4992 2.421314 GGCAACCAAACAGGCCAC 59.579 61.111 5.01 0.00 45.70 5.01
4754 5004 1.502190 GTCTAAGCAAGCGGGCAAC 59.498 57.895 5.46 0.00 35.83 4.17
4755 5005 2.032634 CGTCTAAGCAAGCGGGCAA 61.033 57.895 5.46 0.00 35.83 4.52
4756 5006 2.434185 CGTCTAAGCAAGCGGGCA 60.434 61.111 5.46 0.00 35.83 5.36
4757 5007 3.195698 CCGTCTAAGCAAGCGGGC 61.196 66.667 11.45 0.00 39.64 6.13
4758 5008 0.672401 TTTCCGTCTAAGCAAGCGGG 60.672 55.000 16.11 5.85 41.98 6.13
4759 5009 0.442699 GTTTCCGTCTAAGCAAGCGG 59.557 55.000 12.47 12.47 42.62 5.52
4760 5010 1.136336 GTGTTTCCGTCTAAGCAAGCG 60.136 52.381 0.00 0.00 0.00 4.68
4761 5011 1.871039 TGTGTTTCCGTCTAAGCAAGC 59.129 47.619 0.00 0.00 0.00 4.01
4762 5012 3.058914 CCTTGTGTTTCCGTCTAAGCAAG 60.059 47.826 0.00 0.00 33.87 4.01
4763 5013 2.875933 CCTTGTGTTTCCGTCTAAGCAA 59.124 45.455 0.00 0.00 0.00 3.91
4764 5014 2.489971 CCTTGTGTTTCCGTCTAAGCA 58.510 47.619 0.00 0.00 0.00 3.91
4765 5015 1.197036 GCCTTGTGTTTCCGTCTAAGC 59.803 52.381 0.00 0.00 0.00 3.09
4766 5016 2.489971 TGCCTTGTGTTTCCGTCTAAG 58.510 47.619 0.00 0.00 0.00 2.18
4767 5017 2.623878 TGCCTTGTGTTTCCGTCTAA 57.376 45.000 0.00 0.00 0.00 2.10
4768 5018 2.422597 CATGCCTTGTGTTTCCGTCTA 58.577 47.619 0.00 0.00 0.00 2.59
4769 5019 1.238439 CATGCCTTGTGTTTCCGTCT 58.762 50.000 0.00 0.00 0.00 4.18
4770 5020 0.240945 CCATGCCTTGTGTTTCCGTC 59.759 55.000 0.00 0.00 0.00 4.79
4771 5021 0.467290 ACCATGCCTTGTGTTTCCGT 60.467 50.000 0.00 0.00 0.00 4.69
4772 5022 0.039256 CACCATGCCTTGTGTTTCCG 60.039 55.000 0.00 0.00 0.00 4.30
4773 5023 1.039856 ACACCATGCCTTGTGTTTCC 58.960 50.000 0.21 0.00 42.82 3.13
4774 5024 3.505680 TCATACACCATGCCTTGTGTTTC 59.494 43.478 10.18 0.00 42.82 2.78
4775 5025 3.495331 TCATACACCATGCCTTGTGTTT 58.505 40.909 10.18 1.40 42.82 2.83
4776 5026 3.153369 TCATACACCATGCCTTGTGTT 57.847 42.857 10.18 0.00 42.82 3.32
4777 5027 2.877097 TCATACACCATGCCTTGTGT 57.123 45.000 9.86 9.86 46.72 3.72
4778 5028 4.158209 TGAAATCATACACCATGCCTTGTG 59.842 41.667 3.74 1.51 38.44 3.33
4779 5029 4.343231 TGAAATCATACACCATGCCTTGT 58.657 39.130 0.00 0.00 34.35 3.16
4780 5030 4.987408 TGAAATCATACACCATGCCTTG 57.013 40.909 0.00 0.00 34.35 3.61
4781 5031 5.524971 CATGAAATCATACACCATGCCTT 57.475 39.130 0.00 0.00 34.26 4.35
4785 5035 4.736307 CGTTGCATGAAATCATACACCATG 59.264 41.667 0.00 0.00 38.04 3.66
4786 5036 4.734402 GCGTTGCATGAAATCATACACCAT 60.734 41.667 0.00 0.00 34.26 3.55
4787 5037 3.427368 GCGTTGCATGAAATCATACACCA 60.427 43.478 0.00 0.00 34.26 4.17
4788 5038 3.108144 GCGTTGCATGAAATCATACACC 58.892 45.455 0.00 0.00 34.26 4.16
4789 5039 4.019919 AGCGTTGCATGAAATCATACAC 57.980 40.909 0.00 0.00 34.26 2.90
4790 5040 4.082841 ACAAGCGTTGCATGAAATCATACA 60.083 37.500 0.00 0.00 34.26 2.29
4791 5041 4.414852 ACAAGCGTTGCATGAAATCATAC 58.585 39.130 0.00 0.00 34.26 2.39
4792 5042 4.700268 ACAAGCGTTGCATGAAATCATA 57.300 36.364 0.00 0.00 34.26 2.15
4793 5043 3.581024 ACAAGCGTTGCATGAAATCAT 57.419 38.095 0.00 0.00 36.96 2.45
4794 5044 3.367992 AACAAGCGTTGCATGAAATCA 57.632 38.095 0.00 0.00 32.81 2.57
4795 5045 4.713854 AAAACAAGCGTTGCATGAAATC 57.286 36.364 0.00 0.00 34.86 2.17
4796 5046 4.260702 CCAAAAACAAGCGTTGCATGAAAT 60.261 37.500 0.00 0.00 34.86 2.17
4797 5047 3.063180 CCAAAAACAAGCGTTGCATGAAA 59.937 39.130 0.00 0.00 34.86 2.69
4798 5048 2.606725 CCAAAAACAAGCGTTGCATGAA 59.393 40.909 0.00 0.00 34.86 2.57
4799 5049 2.200067 CCAAAAACAAGCGTTGCATGA 58.800 42.857 0.00 0.00 34.86 3.07
4800 5050 1.932511 ACCAAAAACAAGCGTTGCATG 59.067 42.857 0.00 0.00 34.86 4.06
4801 5051 2.307934 ACCAAAAACAAGCGTTGCAT 57.692 40.000 0.00 0.00 34.86 3.96
4802 5052 2.924290 GTTACCAAAAACAAGCGTTGCA 59.076 40.909 0.00 0.00 34.86 4.08
4803 5053 2.283086 GGTTACCAAAAACAAGCGTTGC 59.717 45.455 0.00 0.00 34.86 4.17
4804 5054 3.776340 AGGTTACCAAAAACAAGCGTTG 58.224 40.909 3.51 0.00 34.86 4.10
4805 5055 3.697542 AGAGGTTACCAAAAACAAGCGTT 59.302 39.130 3.51 0.00 36.73 4.84
4806 5056 3.284617 AGAGGTTACCAAAAACAAGCGT 58.715 40.909 3.51 0.00 0.00 5.07
4807 5057 3.982576 AGAGGTTACCAAAAACAAGCG 57.017 42.857 3.51 0.00 0.00 4.68
4808 5058 4.738252 CGAAAGAGGTTACCAAAAACAAGC 59.262 41.667 3.51 0.00 0.00 4.01
4809 5059 5.278604 CCGAAAGAGGTTACCAAAAACAAG 58.721 41.667 3.51 0.00 0.00 3.16
4810 5060 4.440387 GCCGAAAGAGGTTACCAAAAACAA 60.440 41.667 3.51 0.00 0.00 2.83
4811 5061 3.067040 GCCGAAAGAGGTTACCAAAAACA 59.933 43.478 3.51 0.00 0.00 2.83
4812 5062 3.635331 GCCGAAAGAGGTTACCAAAAAC 58.365 45.455 3.51 0.00 0.00 2.43
4813 5063 2.291190 CGCCGAAAGAGGTTACCAAAAA 59.709 45.455 3.51 0.00 0.00 1.94
4814 5064 1.874872 CGCCGAAAGAGGTTACCAAAA 59.125 47.619 3.51 0.00 0.00 2.44
4815 5065 1.070445 TCGCCGAAAGAGGTTACCAAA 59.930 47.619 3.51 0.00 0.00 3.28
4816 5066 0.680618 TCGCCGAAAGAGGTTACCAA 59.319 50.000 3.51 0.00 0.00 3.67
4817 5067 0.245539 CTCGCCGAAAGAGGTTACCA 59.754 55.000 3.51 0.00 32.38 3.25
4818 5068 3.046280 CTCGCCGAAAGAGGTTACC 57.954 57.895 0.00 0.00 32.38 2.85
4824 5074 1.738099 CACCACCTCGCCGAAAGAG 60.738 63.158 0.00 0.00 35.60 2.85
4825 5075 2.154798 CTCACCACCTCGCCGAAAGA 62.155 60.000 0.00 0.00 0.00 2.52
4826 5076 1.738099 CTCACCACCTCGCCGAAAG 60.738 63.158 0.00 0.00 0.00 2.62
4827 5077 2.342279 CTCACCACCTCGCCGAAA 59.658 61.111 0.00 0.00 0.00 3.46
4828 5078 3.691342 CCTCACCACCTCGCCGAA 61.691 66.667 0.00 0.00 0.00 4.30
4829 5079 4.988716 ACCTCACCACCTCGCCGA 62.989 66.667 0.00 0.00 0.00 5.54
4830 5080 2.642254 TAACCTCACCACCTCGCCG 61.642 63.158 0.00 0.00 0.00 6.46
4831 5081 1.079336 GTAACCTCACCACCTCGCC 60.079 63.158 0.00 0.00 0.00 5.54
4832 5082 1.079336 GGTAACCTCACCACCTCGC 60.079 63.158 0.00 0.00 38.55 5.03
4833 5083 0.246635 CTGGTAACCTCACCACCTCG 59.753 60.000 0.00 0.00 43.76 4.63
4834 5084 0.036294 GCTGGTAACCTCACCACCTC 60.036 60.000 0.00 0.00 43.76 3.85
4835 5085 0.766674 TGCTGGTAACCTCACCACCT 60.767 55.000 0.00 0.00 43.76 4.00
4836 5086 0.605589 GTGCTGGTAACCTCACCACC 60.606 60.000 0.00 0.00 43.76 4.61
4837 5087 0.107831 TGTGCTGGTAACCTCACCAC 59.892 55.000 0.00 0.00 43.76 4.16
4838 5088 0.107831 GTGTGCTGGTAACCTCACCA 59.892 55.000 0.00 0.00 46.46 4.17
4839 5089 0.107831 TGTGTGCTGGTAACCTCACC 59.892 55.000 0.00 0.00 39.20 4.02
4840 5090 1.806542 CATGTGTGCTGGTAACCTCAC 59.193 52.381 0.00 0.00 0.00 3.51
4841 5091 1.271325 CCATGTGTGCTGGTAACCTCA 60.271 52.381 0.00 0.00 0.00 3.86
4842 5092 1.453155 CCATGTGTGCTGGTAACCTC 58.547 55.000 0.00 0.00 0.00 3.85
4843 5093 0.038166 CCCATGTGTGCTGGTAACCT 59.962 55.000 0.00 0.00 31.44 3.50
4844 5094 1.595093 GCCCATGTGTGCTGGTAACC 61.595 60.000 0.00 0.00 31.44 2.85
4845 5095 1.883021 GCCCATGTGTGCTGGTAAC 59.117 57.895 0.00 0.00 31.44 2.50
4846 5096 1.673993 CGCCCATGTGTGCTGGTAA 60.674 57.895 0.00 0.00 31.44 2.85
4847 5097 2.046411 CGCCCATGTGTGCTGGTA 60.046 61.111 0.00 0.00 31.44 3.25
4848 5098 4.269523 ACGCCCATGTGTGCTGGT 62.270 61.111 0.00 0.00 32.92 4.00
4849 5099 3.740397 CACGCCCATGTGTGCTGG 61.740 66.667 0.00 0.00 45.16 4.85
4855 5105 1.196808 GTTGTTCTACACGCCCATGTG 59.803 52.381 0.00 0.00 45.41 3.21
4856 5106 1.519408 GTTGTTCTACACGCCCATGT 58.481 50.000 0.00 0.00 36.56 3.21
4857 5107 0.802494 GGTTGTTCTACACGCCCATG 59.198 55.000 0.00 0.00 0.00 3.66
4858 5108 0.322187 GGGTTGTTCTACACGCCCAT 60.322 55.000 11.55 0.00 40.92 4.00
4859 5109 1.071814 GGGTTGTTCTACACGCCCA 59.928 57.895 11.55 0.00 40.92 5.36
4860 5110 0.535553 TTGGGTTGTTCTACACGCCC 60.536 55.000 10.17 10.17 41.34 6.13
4861 5111 1.265905 CTTTGGGTTGTTCTACACGCC 59.734 52.381 0.00 0.00 0.00 5.68
4862 5112 2.032290 GTCTTTGGGTTGTTCTACACGC 60.032 50.000 0.00 0.00 0.00 5.34
4863 5113 3.001939 GTGTCTTTGGGTTGTTCTACACG 59.998 47.826 0.00 0.00 0.00 4.49
4864 5114 3.942748 TGTGTCTTTGGGTTGTTCTACAC 59.057 43.478 0.00 0.00 37.18 2.90
4865 5115 4.080807 TCTGTGTCTTTGGGTTGTTCTACA 60.081 41.667 0.00 0.00 0.00 2.74
4866 5116 4.448210 TCTGTGTCTTTGGGTTGTTCTAC 58.552 43.478 0.00 0.00 0.00 2.59
4867 5117 4.764050 TCTGTGTCTTTGGGTTGTTCTA 57.236 40.909 0.00 0.00 0.00 2.10
4868 5118 3.644966 TCTGTGTCTTTGGGTTGTTCT 57.355 42.857 0.00 0.00 0.00 3.01
4869 5119 4.398044 TCTTTCTGTGTCTTTGGGTTGTTC 59.602 41.667 0.00 0.00 0.00 3.18
4870 5120 4.340617 TCTTTCTGTGTCTTTGGGTTGTT 58.659 39.130 0.00 0.00 0.00 2.83
4871 5121 3.963129 TCTTTCTGTGTCTTTGGGTTGT 58.037 40.909 0.00 0.00 0.00 3.32
4872 5122 5.335191 GCTATCTTTCTGTGTCTTTGGGTTG 60.335 44.000 0.00 0.00 0.00 3.77
4873 5123 4.762251 GCTATCTTTCTGTGTCTTTGGGTT 59.238 41.667 0.00 0.00 0.00 4.11
4874 5124 4.202461 TGCTATCTTTCTGTGTCTTTGGGT 60.202 41.667 0.00 0.00 0.00 4.51
4875 5125 4.326826 TGCTATCTTTCTGTGTCTTTGGG 58.673 43.478 0.00 0.00 0.00 4.12
4876 5126 7.798596 ATATGCTATCTTTCTGTGTCTTTGG 57.201 36.000 0.00 0.00 0.00 3.28
4879 5129 9.890629 TGTTAATATGCTATCTTTCTGTGTCTT 57.109 29.630 0.00 0.00 0.00 3.01
4902 5152 8.879759 CGTGGTGATGTATTTTAGAACTATGTT 58.120 33.333 0.00 0.00 0.00 2.71
4903 5153 7.011109 GCGTGGTGATGTATTTTAGAACTATGT 59.989 37.037 0.00 0.00 0.00 2.29
4904 5154 7.224753 AGCGTGGTGATGTATTTTAGAACTATG 59.775 37.037 0.00 0.00 0.00 2.23
4905 5155 7.272978 AGCGTGGTGATGTATTTTAGAACTAT 58.727 34.615 0.00 0.00 0.00 2.12
4906 5156 6.636705 AGCGTGGTGATGTATTTTAGAACTA 58.363 36.000 0.00 0.00 0.00 2.24
4907 5157 5.488341 AGCGTGGTGATGTATTTTAGAACT 58.512 37.500 0.00 0.00 0.00 3.01
4908 5158 5.796350 AGCGTGGTGATGTATTTTAGAAC 57.204 39.130 0.00 0.00 0.00 3.01
4909 5159 7.413657 GCTTAAGCGTGGTGATGTATTTTAGAA 60.414 37.037 12.53 0.00 0.00 2.10
4910 5160 6.036735 GCTTAAGCGTGGTGATGTATTTTAGA 59.963 38.462 12.53 0.00 0.00 2.10
4911 5161 6.183360 TGCTTAAGCGTGGTGATGTATTTTAG 60.183 38.462 21.97 0.00 45.83 1.85
4912 5162 5.644206 TGCTTAAGCGTGGTGATGTATTTTA 59.356 36.000 21.97 0.00 45.83 1.52
4913 5163 4.457603 TGCTTAAGCGTGGTGATGTATTTT 59.542 37.500 21.97 0.00 45.83 1.82
4914 5164 4.006989 TGCTTAAGCGTGGTGATGTATTT 58.993 39.130 21.97 0.00 45.83 1.40
4915 5165 3.605634 TGCTTAAGCGTGGTGATGTATT 58.394 40.909 21.97 0.00 45.83 1.89
4916 5166 3.260475 TGCTTAAGCGTGGTGATGTAT 57.740 42.857 21.97 0.00 45.83 2.29
4917 5167 2.753055 TGCTTAAGCGTGGTGATGTA 57.247 45.000 21.97 0.00 45.83 2.29
4918 5168 2.113860 ATGCTTAAGCGTGGTGATGT 57.886 45.000 21.27 0.00 45.83 3.06
4919 5169 2.032549 GCTATGCTTAAGCGTGGTGATG 60.033 50.000 28.56 13.73 45.83 3.07
4920 5170 2.213499 GCTATGCTTAAGCGTGGTGAT 58.787 47.619 28.56 15.12 45.83 3.06
4921 5171 1.066502 TGCTATGCTTAAGCGTGGTGA 60.067 47.619 28.56 15.41 45.83 4.02
4922 5172 1.328680 CTGCTATGCTTAAGCGTGGTG 59.671 52.381 28.56 18.92 45.83 4.17
4923 5173 1.066143 ACTGCTATGCTTAAGCGTGGT 60.066 47.619 28.56 18.60 45.83 4.16
4924 5174 1.656652 ACTGCTATGCTTAAGCGTGG 58.343 50.000 28.56 26.41 45.83 4.94
4925 5175 3.747099 AAACTGCTATGCTTAAGCGTG 57.253 42.857 28.56 19.49 45.83 5.34
4926 5176 3.751175 TCAAAACTGCTATGCTTAAGCGT 59.249 39.130 24.76 24.76 45.83 5.07
4927 5177 4.340894 TCAAAACTGCTATGCTTAAGCG 57.659 40.909 21.97 9.53 45.83 4.68
4928 5178 4.560427 GCTTCAAAACTGCTATGCTTAAGC 59.440 41.667 20.84 20.84 40.50 3.09
4929 5179 5.702865 TGCTTCAAAACTGCTATGCTTAAG 58.297 37.500 0.00 0.00 0.00 1.85
4930 5180 5.703978 TGCTTCAAAACTGCTATGCTTAA 57.296 34.783 0.00 0.00 0.00 1.85
4931 5181 5.703978 TTGCTTCAAAACTGCTATGCTTA 57.296 34.783 0.00 0.00 0.00 3.09
4932 5182 4.589216 TTGCTTCAAAACTGCTATGCTT 57.411 36.364 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.