Multiple sequence alignment - TraesCS2B01G314600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G314600 chr2B 100.000 3160 0 0 1 3160 449668843 449672002 0.000000e+00 5836
1 TraesCS2B01G314600 chr2B 92.219 347 22 3 2815 3160 488762246 488761904 1.320000e-133 486
2 TraesCS2B01G314600 chr2D 93.116 2484 82 37 23 2486 378524368 378526782 0.000000e+00 3557
3 TraesCS2B01G314600 chr2D 89.911 337 30 1 2815 3151 625165253 625165585 6.260000e-117 431
4 TraesCS2B01G314600 chr2D 95.238 147 5 2 2510 2655 378526843 378526988 6.820000e-57 231
5 TraesCS2B01G314600 chr2D 93.023 86 5 1 2668 2752 378527099 378527184 1.190000e-24 124
6 TraesCS2B01G314600 chr2A 91.846 1950 96 28 279 2203 513285675 513287586 0.000000e+00 2662
7 TraesCS2B01G314600 chr2A 92.507 347 21 4 2814 3160 351064614 351064273 2.830000e-135 492
8 TraesCS2B01G314600 chr2A 95.000 220 6 3 1 218 513285243 513285459 1.090000e-89 340
9 TraesCS2B01G314600 chr2A 92.715 151 11 0 2336 2486 513287650 513287800 5.310000e-53 219
10 TraesCS2B01G314600 chr2A 91.837 147 10 2 2510 2655 513287862 513288007 1.490000e-48 204
11 TraesCS2B01G314600 chr2A 93.333 105 6 1 2564 2667 513291034 513291138 1.520000e-33 154
12 TraesCS2B01G314600 chr2A 96.386 83 3 0 2669 2751 513288128 513288210 1.530000e-28 137
13 TraesCS2B01G314600 chr2A 93.827 81 5 0 2668 2748 513291237 513291317 4.280000e-24 122
14 TraesCS2B01G314600 chr2A 93.846 65 4 0 2184 2248 513287587 513287651 7.210000e-17 99
15 TraesCS2B01G314600 chr7D 94.477 344 15 1 2817 3160 292918970 292918631 7.760000e-146 527
16 TraesCS2B01G314600 chr4B 93.235 340 18 2 2822 3160 534744732 534744397 2.190000e-136 496
17 TraesCS2B01G314600 chr3D 89.614 337 26 5 2815 3146 508327078 508326746 1.360000e-113 420
18 TraesCS2B01G314600 chr3D 87.749 351 34 6 2815 3160 439204547 439204201 4.910000e-108 401
19 TraesCS2B01G314600 chr4D 89.086 339 29 5 2815 3149 444259426 444259092 6.310000e-112 414
20 TraesCS2B01G314600 chr5D 87.324 355 35 6 2812 3160 255766759 255766409 6.350000e-107 398
21 TraesCS2B01G314600 chr5D 76.829 246 46 10 1182 1423 34045043 34044805 9.200000e-26 128
22 TraesCS2B01G314600 chr5A 89.091 110 11 1 1315 1423 22485889 22485780 5.500000e-28 135
23 TraesCS2B01G314600 chr5B 89.524 105 11 0 1319 1423 25062069 25062173 1.980000e-27 134
24 TraesCS2B01G314600 chr5B 84.127 126 20 0 1379 1504 527290104 527290229 4.280000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G314600 chr2B 449668843 449672002 3159 False 5836.000 5836 100.000000 1 3160 1 chr2B.!!$F1 3159
1 TraesCS2B01G314600 chr2D 378524368 378527184 2816 False 1304.000 3557 93.792333 23 2752 3 chr2D.!!$F2 2729
2 TraesCS2B01G314600 chr2A 513285243 513291317 6074 False 492.125 2662 93.598750 1 2751 8 chr2A.!!$F1 2750

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
353 547 0.320771 GGGTAGACACAGGCACACAG 60.321 60.0 0.0 0.0 0.0 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2270 2523 0.395724 AAATCTAAGCAAGGGGGCGG 60.396 55.0 0.0 0.0 39.27 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 4.009675 ACGGAGACAGTTACGTTATGGTA 58.990 43.478 0.00 0.00 35.90 3.25
137 140 3.541242 ATATCTGCTCCTAGCCTCACT 57.459 47.619 0.00 0.00 41.51 3.41
224 416 1.743772 CGCAGCAGGTATTTAGCCAGT 60.744 52.381 0.00 0.00 0.00 4.00
229 421 3.055385 AGCAGGTATTTAGCCAGTTCGAA 60.055 43.478 0.00 0.00 0.00 3.71
258 450 0.673644 AACCATTTCGGGAGCAGACG 60.674 55.000 0.00 0.00 40.22 4.18
259 451 1.079127 CCATTTCGGGAGCAGACGT 60.079 57.895 0.00 0.00 0.00 4.34
260 452 1.361668 CCATTTCGGGAGCAGACGTG 61.362 60.000 0.00 0.00 0.00 4.49
292 484 1.007038 CAAATGTGCAGCCGCTGTT 60.007 52.632 21.29 5.24 39.64 3.16
294 486 2.146073 AAATGTGCAGCCGCTGTTCC 62.146 55.000 21.29 10.09 39.64 3.62
300 492 1.160329 GCAGCCGCTGTTCCGATAAT 61.160 55.000 21.29 0.00 33.43 1.28
346 540 2.707849 CCGTCGGGGTAGACACAGG 61.708 68.421 2.34 0.00 40.98 4.00
347 541 2.577593 GTCGGGGTAGACACAGGC 59.422 66.667 0.00 0.00 40.65 4.85
348 542 2.118732 TCGGGGTAGACACAGGCA 59.881 61.111 0.00 0.00 0.00 4.75
349 543 2.264794 CGGGGTAGACACAGGCAC 59.735 66.667 0.00 0.00 0.00 5.01
350 544 2.579657 CGGGGTAGACACAGGCACA 61.580 63.158 0.00 0.00 0.00 4.57
351 545 1.003718 GGGGTAGACACAGGCACAC 60.004 63.158 0.00 0.00 0.00 3.82
352 546 1.752198 GGGTAGACACAGGCACACA 59.248 57.895 0.00 0.00 0.00 3.72
353 547 0.320771 GGGTAGACACAGGCACACAG 60.321 60.000 0.00 0.00 0.00 3.66
354 548 0.951040 GGTAGACACAGGCACACAGC 60.951 60.000 0.00 0.00 44.65 4.40
432 638 2.743718 CCGGAACCAGCTGTCACT 59.256 61.111 13.81 0.00 0.00 3.41
462 668 9.475620 AAATTATATGATCATGATGATGCTGGT 57.524 29.630 18.72 0.00 37.20 4.00
578 788 1.350193 CGATCCATGCCGTACTATGC 58.650 55.000 0.00 0.00 0.00 3.14
622 832 0.681564 TTCAACCCACGGCACAGTTT 60.682 50.000 0.00 0.00 0.00 2.66
632 849 3.365265 CACAGTTTGCCCTCCCGC 61.365 66.667 0.00 0.00 0.00 6.13
633 850 3.884774 ACAGTTTGCCCTCCCGCA 61.885 61.111 0.00 0.00 36.85 5.69
809 1032 1.800713 GCGAAGAACGAGTCCGGAC 60.801 63.158 27.67 27.67 45.77 4.79
911 1134 4.710167 CACCCCCGTTCCGTTCCC 62.710 72.222 0.00 0.00 0.00 3.97
918 1151 3.047877 GTTCCGTTCCCGCACAGG 61.048 66.667 0.00 0.00 40.63 4.00
937 1170 1.067354 GGCCTGGCTGATTGACTTTTG 60.067 52.381 19.68 0.00 0.00 2.44
947 1180 2.002018 TTGACTTTTGGGTCCCGGCT 62.002 55.000 2.65 0.00 35.54 5.52
948 1181 1.228459 GACTTTTGGGTCCCGGCTT 60.228 57.895 2.65 0.00 0.00 4.35
949 1182 1.524008 GACTTTTGGGTCCCGGCTTG 61.524 60.000 2.65 0.00 0.00 4.01
950 1183 2.915137 TTTTGGGTCCCGGCTTGC 60.915 61.111 2.65 0.00 0.00 4.01
951 1184 4.986708 TTTGGGTCCCGGCTTGCC 62.987 66.667 2.65 0.75 0.00 4.52
1069 1302 4.824515 CCCTCCTCCGCGTCCTCT 62.825 72.222 4.92 0.00 0.00 3.69
1110 1343 4.498520 CTGCCGTCCGAGCACGAT 62.499 66.667 4.70 0.00 42.69 3.73
1260 1493 1.079127 CATCAAGAAGCCGTCCGGT 60.079 57.895 7.66 0.00 37.65 5.28
1478 1711 4.899239 CCAGATGGACGAGGCCGC 62.899 72.222 0.00 0.00 39.95 6.53
1879 2112 4.484987 CCTACCGGCAACCACAAA 57.515 55.556 0.00 0.00 0.00 2.83
1986 2219 1.568504 TGAGCAACCTACCGGATCTT 58.431 50.000 9.46 0.00 0.00 2.40
2035 2268 0.375106 CAGCGGCCGAAATTTCTCTC 59.625 55.000 33.48 6.65 0.00 3.20
2036 2269 0.744771 AGCGGCCGAAATTTCTCTCC 60.745 55.000 33.48 6.03 0.00 3.71
2037 2270 1.715862 GCGGCCGAAATTTCTCTCCC 61.716 60.000 33.48 1.16 0.00 4.30
2040 2273 1.210722 GGCCGAAATTTCTCTCCCTCT 59.789 52.381 15.92 0.00 0.00 3.69
2041 2274 2.556257 GCCGAAATTTCTCTCCCTCTC 58.444 52.381 15.92 0.00 0.00 3.20
2042 2275 2.169561 GCCGAAATTTCTCTCCCTCTCT 59.830 50.000 15.92 0.00 0.00 3.10
2043 2276 3.385111 GCCGAAATTTCTCTCCCTCTCTA 59.615 47.826 15.92 0.00 0.00 2.43
2044 2277 4.500716 GCCGAAATTTCTCTCCCTCTCTAG 60.501 50.000 15.92 0.00 0.00 2.43
2248 2501 5.405935 TGCTTAAAGTCAGCAGTGATAGA 57.594 39.130 0.00 0.00 42.49 1.98
2249 2502 5.793817 TGCTTAAAGTCAGCAGTGATAGAA 58.206 37.500 0.00 0.00 42.49 2.10
2250 2503 5.871524 TGCTTAAAGTCAGCAGTGATAGAAG 59.128 40.000 0.00 0.00 42.49 2.85
2251 2504 5.293079 GCTTAAAGTCAGCAGTGATAGAAGG 59.707 44.000 0.00 0.00 37.22 3.46
2252 2505 4.899352 AAAGTCAGCAGTGATAGAAGGT 57.101 40.909 0.00 0.00 34.36 3.50
2253 2506 4.899352 AAGTCAGCAGTGATAGAAGGTT 57.101 40.909 0.00 0.00 34.36 3.50
2254 2507 6.360370 AAAGTCAGCAGTGATAGAAGGTTA 57.640 37.500 0.00 0.00 34.36 2.85
2255 2508 5.331876 AGTCAGCAGTGATAGAAGGTTAC 57.668 43.478 0.00 0.00 34.36 2.50
2256 2509 5.020132 AGTCAGCAGTGATAGAAGGTTACT 58.980 41.667 0.00 0.00 34.36 2.24
2257 2510 6.188407 AGTCAGCAGTGATAGAAGGTTACTA 58.812 40.000 0.00 0.00 34.36 1.82
2258 2511 6.320164 AGTCAGCAGTGATAGAAGGTTACTAG 59.680 42.308 0.00 0.00 34.36 2.57
2259 2512 6.319152 GTCAGCAGTGATAGAAGGTTACTAGA 59.681 42.308 0.00 0.00 34.36 2.43
2260 2513 6.890268 TCAGCAGTGATAGAAGGTTACTAGAA 59.110 38.462 0.00 0.00 0.00 2.10
2261 2514 7.067615 TCAGCAGTGATAGAAGGTTACTAGAAG 59.932 40.741 0.00 0.00 0.00 2.85
2262 2515 5.980715 GCAGTGATAGAAGGTTACTAGAAGC 59.019 44.000 0.00 0.00 0.00 3.86
2263 2516 6.508777 CAGTGATAGAAGGTTACTAGAAGCC 58.491 44.000 0.00 0.00 0.00 4.35
2264 2517 5.299782 AGTGATAGAAGGTTACTAGAAGCCG 59.700 44.000 0.00 0.00 0.00 5.52
2265 2518 4.583489 TGATAGAAGGTTACTAGAAGCCGG 59.417 45.833 0.00 0.00 0.00 6.13
2266 2519 1.481363 AGAAGGTTACTAGAAGCCGGC 59.519 52.381 21.89 21.89 0.00 6.13
2267 2520 0.540454 AAGGTTACTAGAAGCCGGCC 59.460 55.000 26.15 9.10 0.00 6.13
2268 2521 1.227176 GGTTACTAGAAGCCGGCCG 60.227 63.158 26.15 21.04 0.00 6.13
2269 2522 1.669999 GGTTACTAGAAGCCGGCCGA 61.670 60.000 30.73 3.70 0.00 5.54
2270 2523 0.527169 GTTACTAGAAGCCGGCCGAC 60.527 60.000 30.73 17.62 0.00 4.79
2271 2524 1.669999 TTACTAGAAGCCGGCCGACC 61.670 60.000 30.73 17.63 0.00 4.79
2284 2537 4.090588 CGACCGCCCCCTTGCTTA 62.091 66.667 0.00 0.00 0.00 3.09
2285 2538 2.124695 GACCGCCCCCTTGCTTAG 60.125 66.667 0.00 0.00 0.00 2.18
2286 2539 2.609610 ACCGCCCCCTTGCTTAGA 60.610 61.111 0.00 0.00 0.00 2.10
2287 2540 1.984288 GACCGCCCCCTTGCTTAGAT 61.984 60.000 0.00 0.00 0.00 1.98
2288 2541 1.227383 CCGCCCCCTTGCTTAGATT 59.773 57.895 0.00 0.00 0.00 2.40
2289 2542 0.395724 CCGCCCCCTTGCTTAGATTT 60.396 55.000 0.00 0.00 0.00 2.17
2290 2543 1.474330 CGCCCCCTTGCTTAGATTTT 58.526 50.000 0.00 0.00 0.00 1.82
2291 2544 1.824852 CGCCCCCTTGCTTAGATTTTT 59.175 47.619 0.00 0.00 0.00 1.94
2292 2545 2.159240 CGCCCCCTTGCTTAGATTTTTC 60.159 50.000 0.00 0.00 0.00 2.29
2293 2546 3.099905 GCCCCCTTGCTTAGATTTTTCT 58.900 45.455 0.00 0.00 0.00 2.52
2294 2547 3.515502 GCCCCCTTGCTTAGATTTTTCTT 59.484 43.478 0.00 0.00 0.00 2.52
2295 2548 4.621510 GCCCCCTTGCTTAGATTTTTCTTG 60.622 45.833 0.00 0.00 0.00 3.02
2296 2549 4.772100 CCCCCTTGCTTAGATTTTTCTTGA 59.228 41.667 0.00 0.00 0.00 3.02
2297 2550 5.423290 CCCCCTTGCTTAGATTTTTCTTGAT 59.577 40.000 0.00 0.00 0.00 2.57
2298 2551 6.070596 CCCCCTTGCTTAGATTTTTCTTGATT 60.071 38.462 0.00 0.00 0.00 2.57
2299 2552 7.389232 CCCCTTGCTTAGATTTTTCTTGATTT 58.611 34.615 0.00 0.00 0.00 2.17
2300 2553 8.531146 CCCCTTGCTTAGATTTTTCTTGATTTA 58.469 33.333 0.00 0.00 0.00 1.40
2331 2584 8.697507 AGTTTCTTTGGATTTACATCTCTTGT 57.302 30.769 0.00 0.00 42.62 3.16
2332 2585 8.571336 AGTTTCTTTGGATTTACATCTCTTGTG 58.429 33.333 0.00 0.00 39.48 3.33
2333 2586 8.352942 GTTTCTTTGGATTTACATCTCTTGTGT 58.647 33.333 0.00 0.00 39.48 3.72
2334 2587 9.567776 TTTCTTTGGATTTACATCTCTTGTGTA 57.432 29.630 0.00 0.00 39.48 2.90
2343 2667 3.055530 ACATCTCTTGTGTAAGCTGAGGG 60.056 47.826 0.00 0.00 37.11 4.30
2389 2713 7.556635 ACCATGACTTTATTCTTTTACCCTAGC 59.443 37.037 0.00 0.00 0.00 3.42
2401 2725 5.881923 TTTACCCTAGCGAATTACTCCAT 57.118 39.130 0.00 0.00 0.00 3.41
2410 2734 5.371526 AGCGAATTACTCCATTGATGATGT 58.628 37.500 0.00 0.00 33.71 3.06
2441 2765 6.595326 TGATTAGGTCATGCTGACTTTTGTAG 59.405 38.462 13.59 0.00 46.19 2.74
2443 2767 4.718961 AGGTCATGCTGACTTTTGTAGTT 58.281 39.130 13.59 0.00 46.19 2.24
2457 2784 6.964934 ACTTTTGTAGTTTTACGCTTGACAAG 59.035 34.615 11.02 11.02 31.29 3.16
2478 2805 5.339008 AGTGTAGAATAAAGTGGCGATCA 57.661 39.130 0.00 0.00 0.00 2.92
2486 2813 3.340814 AAAGTGGCGATCAGATGTTCT 57.659 42.857 0.00 0.00 0.00 3.01
2487 2814 2.593346 AGTGGCGATCAGATGTTCTC 57.407 50.000 0.00 0.00 0.00 2.87
2488 2815 2.106566 AGTGGCGATCAGATGTTCTCT 58.893 47.619 0.00 0.00 33.14 3.10
2489 2816 2.499289 AGTGGCGATCAGATGTTCTCTT 59.501 45.455 0.00 0.00 29.16 2.85
2492 2819 2.419297 GGCGATCAGATGTTCTCTTGGT 60.419 50.000 0.00 0.00 29.16 3.67
2493 2820 3.181475 GGCGATCAGATGTTCTCTTGGTA 60.181 47.826 0.00 0.00 29.16 3.25
2495 2822 4.440802 GCGATCAGATGTTCTCTTGGTAGT 60.441 45.833 0.00 0.00 29.16 2.73
2496 2823 5.221067 GCGATCAGATGTTCTCTTGGTAGTA 60.221 44.000 0.00 0.00 29.16 1.82
2498 2825 7.258441 CGATCAGATGTTCTCTTGGTAGTAAA 58.742 38.462 0.00 0.00 29.16 2.01
2499 2826 7.759886 CGATCAGATGTTCTCTTGGTAGTAAAA 59.240 37.037 0.00 0.00 29.16 1.52
2500 2827 8.779354 ATCAGATGTTCTCTTGGTAGTAAAAC 57.221 34.615 0.00 0.00 29.16 2.43
2501 2828 7.732025 TCAGATGTTCTCTTGGTAGTAAAACA 58.268 34.615 0.00 0.00 29.16 2.83
2502 2829 7.872993 TCAGATGTTCTCTTGGTAGTAAAACAG 59.127 37.037 0.00 0.00 29.16 3.16
2503 2830 7.118390 CAGATGTTCTCTTGGTAGTAAAACAGG 59.882 40.741 0.00 0.00 29.16 4.00
2504 2831 6.488769 TGTTCTCTTGGTAGTAAAACAGGA 57.511 37.500 0.00 0.00 0.00 3.86
2505 2832 7.074653 TGTTCTCTTGGTAGTAAAACAGGAT 57.925 36.000 0.00 0.00 0.00 3.24
2506 2833 6.934645 TGTTCTCTTGGTAGTAAAACAGGATG 59.065 38.462 0.00 0.00 46.00 3.51
2508 2835 7.496346 TCTCTTGGTAGTAAAACAGGATGAT 57.504 36.000 0.00 0.00 39.69 2.45
2527 2893 4.520179 TGATAGTGCATGCAGAGTTTGAT 58.480 39.130 23.41 6.60 0.00 2.57
2574 2940 0.813821 GTGCTTCTGGCCAAGATTCC 59.186 55.000 7.01 0.00 40.92 3.01
2615 2981 1.818785 GAGCTGGATCTGCCTGTGC 60.819 63.158 0.00 0.00 37.86 4.57
2684 6267 2.700773 GCGGGAATTCTGTGGGTGC 61.701 63.158 5.23 0.00 0.00 5.01
2734 6317 6.237595 GGTCTATCTATGAAATATGAACGCGC 60.238 42.308 5.73 0.00 0.00 6.86
2748 6331 3.057736 TGAACGCGCTTCTAGAGTAAACT 60.058 43.478 5.73 0.00 0.00 2.66
2752 6335 4.036352 CGCGCTTCTAGAGTAAACTTAGG 58.964 47.826 5.56 0.00 0.00 2.69
2753 6336 4.361420 GCGCTTCTAGAGTAAACTTAGGG 58.639 47.826 0.00 0.00 0.00 3.53
2754 6337 4.361420 CGCTTCTAGAGTAAACTTAGGGC 58.639 47.826 0.00 0.00 0.00 5.19
2755 6338 4.142227 CGCTTCTAGAGTAAACTTAGGGCA 60.142 45.833 0.00 0.00 0.00 5.36
2756 6339 5.452077 CGCTTCTAGAGTAAACTTAGGGCAT 60.452 44.000 0.00 0.00 0.00 4.40
2757 6340 5.986741 GCTTCTAGAGTAAACTTAGGGCATC 59.013 44.000 0.00 0.00 0.00 3.91
2758 6341 6.183360 GCTTCTAGAGTAAACTTAGGGCATCT 60.183 42.308 0.00 0.00 0.00 2.90
2759 6342 6.963083 TCTAGAGTAAACTTAGGGCATCTC 57.037 41.667 0.00 0.00 0.00 2.75
2760 6343 5.834204 TCTAGAGTAAACTTAGGGCATCTCC 59.166 44.000 0.00 0.00 0.00 3.71
2761 6344 4.362677 AGAGTAAACTTAGGGCATCTCCA 58.637 43.478 0.00 0.00 36.21 3.86
2762 6345 4.971924 AGAGTAAACTTAGGGCATCTCCAT 59.028 41.667 0.00 0.00 36.21 3.41
2763 6346 5.430089 AGAGTAAACTTAGGGCATCTCCATT 59.570 40.000 0.00 0.00 36.21 3.16
2764 6347 5.440610 AGTAAACTTAGGGCATCTCCATTG 58.559 41.667 0.00 0.00 36.21 2.82
2765 6348 2.355010 ACTTAGGGCATCTCCATTGC 57.645 50.000 0.00 0.00 39.41 3.56
2766 6349 1.565759 ACTTAGGGCATCTCCATTGCA 59.434 47.619 0.00 0.00 41.95 4.08
2767 6350 2.228059 CTTAGGGCATCTCCATTGCAG 58.772 52.381 0.00 0.00 41.95 4.41
2768 6351 0.475475 TAGGGCATCTCCATTGCAGG 59.525 55.000 0.00 0.00 41.95 4.85
2769 6352 1.831286 GGGCATCTCCATTGCAGGG 60.831 63.158 0.18 0.18 41.95 4.45
2770 6353 2.496291 GGCATCTCCATTGCAGGGC 61.496 63.158 1.74 0.00 41.95 5.19
2771 6354 2.842256 GCATCTCCATTGCAGGGCG 61.842 63.158 1.74 0.00 39.90 6.13
2772 6355 2.517875 ATCTCCATTGCAGGGCGC 60.518 61.111 0.00 0.00 42.89 6.53
2773 6356 3.052909 ATCTCCATTGCAGGGCGCT 62.053 57.895 7.64 0.00 43.06 5.92
2774 6357 2.563013 ATCTCCATTGCAGGGCGCTT 62.563 55.000 7.64 0.00 43.06 4.68
2775 6358 1.451927 CTCCATTGCAGGGCGCTTA 60.452 57.895 7.64 0.00 43.06 3.09
2776 6359 1.442526 CTCCATTGCAGGGCGCTTAG 61.443 60.000 7.64 0.00 43.06 2.18
2777 6360 2.484062 CCATTGCAGGGCGCTTAGG 61.484 63.158 7.64 0.00 43.06 2.69
2778 6361 2.830370 ATTGCAGGGCGCTTAGGC 60.830 61.111 7.64 7.16 43.06 3.93
2796 6379 4.745751 CGGGCGCCAGGTTCGTAA 62.746 66.667 30.85 0.00 0.00 3.18
2797 6380 2.124860 GGGCGCCAGGTTCGTAAT 60.125 61.111 30.85 0.00 0.00 1.89
2798 6381 2.178235 GGGCGCCAGGTTCGTAATC 61.178 63.158 30.85 1.22 0.00 1.75
2799 6382 2.178235 GGCGCCAGGTTCGTAATCC 61.178 63.158 24.80 0.00 0.00 3.01
2800 6383 2.178235 GCGCCAGGTTCGTAATCCC 61.178 63.158 0.00 0.00 0.00 3.85
2801 6384 1.881252 CGCCAGGTTCGTAATCCCG 60.881 63.158 0.00 0.00 0.00 5.14
2802 6385 1.523032 GCCAGGTTCGTAATCCCGG 60.523 63.158 0.00 0.00 0.00 5.73
2803 6386 1.902556 CCAGGTTCGTAATCCCGGT 59.097 57.895 0.00 0.00 0.00 5.28
2804 6387 1.113788 CCAGGTTCGTAATCCCGGTA 58.886 55.000 0.00 0.00 0.00 4.02
2805 6388 1.068127 CCAGGTTCGTAATCCCGGTAG 59.932 57.143 0.00 0.00 0.00 3.18
2806 6389 2.026641 CAGGTTCGTAATCCCGGTAGA 58.973 52.381 0.00 0.00 0.00 2.59
2807 6390 2.626743 CAGGTTCGTAATCCCGGTAGAT 59.373 50.000 0.00 0.00 0.00 1.98
2808 6391 3.069158 CAGGTTCGTAATCCCGGTAGATT 59.931 47.826 10.32 10.32 39.73 2.40
2809 6392 4.279169 CAGGTTCGTAATCCCGGTAGATTA 59.721 45.833 8.57 8.57 37.62 1.75
2810 6393 4.522022 AGGTTCGTAATCCCGGTAGATTAG 59.478 45.833 11.98 7.88 38.95 1.73
2811 6394 4.233005 GTTCGTAATCCCGGTAGATTAGC 58.767 47.826 11.98 7.67 38.95 3.09
2821 6404 3.834610 CGGTAGATTAGCGGTAAGGATG 58.165 50.000 13.14 0.00 45.08 3.51
2822 6405 3.367087 CGGTAGATTAGCGGTAAGGATGG 60.367 52.174 13.14 0.00 45.08 3.51
2823 6406 2.841442 AGATTAGCGGTAAGGATGGC 57.159 50.000 13.14 0.00 0.00 4.40
2824 6407 2.047061 AGATTAGCGGTAAGGATGGCA 58.953 47.619 13.14 0.00 0.00 4.92
2825 6408 2.438021 AGATTAGCGGTAAGGATGGCAA 59.562 45.455 13.14 0.00 0.00 4.52
2826 6409 3.073062 AGATTAGCGGTAAGGATGGCAAT 59.927 43.478 13.14 0.00 0.00 3.56
2827 6410 2.254546 TAGCGGTAAGGATGGCAATG 57.745 50.000 0.00 0.00 0.00 2.82
2828 6411 0.466189 AGCGGTAAGGATGGCAATGG 60.466 55.000 0.00 0.00 0.00 3.16
2829 6412 0.465460 GCGGTAAGGATGGCAATGGA 60.465 55.000 0.00 0.00 0.00 3.41
2830 6413 1.819305 GCGGTAAGGATGGCAATGGAT 60.819 52.381 0.00 0.00 0.00 3.41
2831 6414 2.552155 GCGGTAAGGATGGCAATGGATA 60.552 50.000 0.00 0.00 0.00 2.59
2832 6415 3.338249 CGGTAAGGATGGCAATGGATAG 58.662 50.000 0.00 0.00 0.00 2.08
2833 6416 3.244561 CGGTAAGGATGGCAATGGATAGT 60.245 47.826 0.00 0.00 0.00 2.12
2834 6417 4.074970 GGTAAGGATGGCAATGGATAGTG 58.925 47.826 0.00 0.00 0.00 2.74
2835 6418 3.959495 AAGGATGGCAATGGATAGTGT 57.041 42.857 0.00 0.00 0.00 3.55
2836 6419 5.221843 GGTAAGGATGGCAATGGATAGTGTA 60.222 44.000 0.00 0.00 0.00 2.90
2837 6420 5.589367 AAGGATGGCAATGGATAGTGTAT 57.411 39.130 0.00 0.00 0.00 2.29
2838 6421 4.914983 AGGATGGCAATGGATAGTGTATG 58.085 43.478 0.00 0.00 0.00 2.39
2839 6422 4.012374 GGATGGCAATGGATAGTGTATGG 58.988 47.826 0.00 0.00 0.00 2.74
2840 6423 3.507162 TGGCAATGGATAGTGTATGGG 57.493 47.619 0.00 0.00 0.00 4.00
2841 6424 2.108075 TGGCAATGGATAGTGTATGGGG 59.892 50.000 0.00 0.00 0.00 4.96
2842 6425 2.162681 GCAATGGATAGTGTATGGGGC 58.837 52.381 0.00 0.00 0.00 5.80
2843 6426 2.426522 CAATGGATAGTGTATGGGGCG 58.573 52.381 0.00 0.00 0.00 6.13
2844 6427 0.984230 ATGGATAGTGTATGGGGCGG 59.016 55.000 0.00 0.00 0.00 6.13
2845 6428 1.125093 TGGATAGTGTATGGGGCGGG 61.125 60.000 0.00 0.00 0.00 6.13
2846 6429 1.125711 GGATAGTGTATGGGGCGGGT 61.126 60.000 0.00 0.00 0.00 5.28
2847 6430 1.636148 GATAGTGTATGGGGCGGGTA 58.364 55.000 0.00 0.00 0.00 3.69
2848 6431 1.549170 GATAGTGTATGGGGCGGGTAG 59.451 57.143 0.00 0.00 0.00 3.18
2849 6432 0.557238 TAGTGTATGGGGCGGGTAGA 59.443 55.000 0.00 0.00 0.00 2.59
2850 6433 0.759436 AGTGTATGGGGCGGGTAGAG 60.759 60.000 0.00 0.00 0.00 2.43
2851 6434 2.138179 TGTATGGGGCGGGTAGAGC 61.138 63.158 0.00 0.00 0.00 4.09
2852 6435 2.138179 GTATGGGGCGGGTAGAGCA 61.138 63.158 0.00 0.00 36.08 4.26
2853 6436 1.383386 TATGGGGCGGGTAGAGCAA 60.383 57.895 0.00 0.00 36.08 3.91
2854 6437 0.766674 TATGGGGCGGGTAGAGCAAT 60.767 55.000 0.00 0.00 36.08 3.56
2855 6438 0.766674 ATGGGGCGGGTAGAGCAATA 60.767 55.000 0.00 0.00 36.08 1.90
2856 6439 1.070957 GGGGCGGGTAGAGCAATAC 59.929 63.158 0.00 0.00 36.08 1.89
2857 6440 1.070957 GGGCGGGTAGAGCAATACC 59.929 63.158 8.50 8.50 43.90 2.73
2858 6441 1.692173 GGGCGGGTAGAGCAATACCA 61.692 60.000 16.56 0.00 46.04 3.25
2859 6442 0.396811 GGCGGGTAGAGCAATACCAT 59.603 55.000 16.56 0.00 46.04 3.55
2860 6443 1.621814 GGCGGGTAGAGCAATACCATA 59.378 52.381 16.56 0.00 46.04 2.74
2861 6444 2.612221 GGCGGGTAGAGCAATACCATAC 60.612 54.545 16.56 7.14 46.04 2.39
2862 6445 2.299297 GCGGGTAGAGCAATACCATACT 59.701 50.000 16.56 0.00 46.04 2.12
2863 6446 3.614390 GCGGGTAGAGCAATACCATACTC 60.614 52.174 16.56 1.60 46.04 2.59
2864 6447 3.572682 CGGGTAGAGCAATACCATACTCA 59.427 47.826 16.56 0.00 46.04 3.41
2865 6448 4.220821 CGGGTAGAGCAATACCATACTCAT 59.779 45.833 16.56 0.00 46.04 2.90
2866 6449 5.417894 CGGGTAGAGCAATACCATACTCATA 59.582 44.000 16.56 0.00 46.04 2.15
2867 6450 6.625300 CGGGTAGAGCAATACCATACTCATAC 60.625 46.154 16.56 0.00 46.04 2.39
2868 6451 6.351117 GGGTAGAGCAATACCATACTCATACC 60.351 46.154 16.56 0.00 46.04 2.73
2869 6452 5.746990 AGAGCAATACCATACTCATACCC 57.253 43.478 0.00 0.00 0.00 3.69
2870 6453 4.220821 AGAGCAATACCATACTCATACCCG 59.779 45.833 0.00 0.00 0.00 5.28
2871 6454 3.901844 AGCAATACCATACTCATACCCGT 59.098 43.478 0.00 0.00 0.00 5.28
2872 6455 3.994392 GCAATACCATACTCATACCCGTG 59.006 47.826 0.00 0.00 0.00 4.94
2873 6456 4.502604 GCAATACCATACTCATACCCGTGT 60.503 45.833 0.00 0.00 0.00 4.49
2874 6457 5.279106 GCAATACCATACTCATACCCGTGTA 60.279 44.000 0.00 0.00 0.00 2.90
2875 6458 6.387465 CAATACCATACTCATACCCGTGTAG 58.613 44.000 0.00 0.00 0.00 2.74
2876 6459 3.907221 ACCATACTCATACCCGTGTAGT 58.093 45.455 0.00 0.00 0.00 2.73
2877 6460 3.887716 ACCATACTCATACCCGTGTAGTC 59.112 47.826 0.00 0.00 0.00 2.59
2878 6461 3.887110 CCATACTCATACCCGTGTAGTCA 59.113 47.826 0.00 0.00 0.00 3.41
2879 6462 4.340097 CCATACTCATACCCGTGTAGTCAA 59.660 45.833 0.00 0.00 0.00 3.18
2880 6463 5.010719 CCATACTCATACCCGTGTAGTCAAT 59.989 44.000 0.00 0.00 0.00 2.57
2881 6464 4.386867 ACTCATACCCGTGTAGTCAATG 57.613 45.455 0.00 0.00 0.00 2.82
2882 6465 3.132289 ACTCATACCCGTGTAGTCAATGG 59.868 47.826 0.00 0.00 0.00 3.16
2883 6466 2.432874 TCATACCCGTGTAGTCAATGGG 59.567 50.000 0.00 0.00 43.24 4.00
2884 6467 2.768046 ACCCGTGTAGTCAATGGGT 58.232 52.632 0.30 0.30 44.66 4.51
2885 6468 1.941377 ACCCGTGTAGTCAATGGGTA 58.059 50.000 4.50 0.00 46.34 3.69
2886 6469 1.551883 ACCCGTGTAGTCAATGGGTAC 59.448 52.381 4.50 0.00 46.34 3.34
2887 6470 1.551430 CCCGTGTAGTCAATGGGTACA 59.449 52.381 0.00 0.00 37.00 2.90
2888 6471 2.027929 CCCGTGTAGTCAATGGGTACAA 60.028 50.000 0.00 0.00 37.00 2.41
2889 6472 3.557475 CCCGTGTAGTCAATGGGTACAAA 60.557 47.826 0.00 0.00 37.00 2.83
2890 6473 4.066490 CCGTGTAGTCAATGGGTACAAAA 58.934 43.478 0.00 0.00 0.00 2.44
2891 6474 4.698304 CCGTGTAGTCAATGGGTACAAAAT 59.302 41.667 0.00 0.00 0.00 1.82
2892 6475 5.182380 CCGTGTAGTCAATGGGTACAAAATT 59.818 40.000 0.00 0.00 0.00 1.82
2893 6476 6.311723 CGTGTAGTCAATGGGTACAAAATTC 58.688 40.000 0.00 0.00 0.00 2.17
2894 6477 6.148811 CGTGTAGTCAATGGGTACAAAATTCT 59.851 38.462 0.00 0.00 0.00 2.40
2895 6478 7.332430 CGTGTAGTCAATGGGTACAAAATTCTA 59.668 37.037 0.00 0.00 0.00 2.10
2896 6479 8.448615 GTGTAGTCAATGGGTACAAAATTCTAC 58.551 37.037 0.00 0.00 0.00 2.59
2897 6480 7.608761 TGTAGTCAATGGGTACAAAATTCTACC 59.391 37.037 0.00 0.00 32.87 3.18
2905 6488 4.818005 GGTACAAAATTCTACCCATACCCG 59.182 45.833 0.00 0.00 0.00 5.28
2906 6489 4.579647 ACAAAATTCTACCCATACCCGT 57.420 40.909 0.00 0.00 0.00 5.28
2907 6490 5.697082 ACAAAATTCTACCCATACCCGTA 57.303 39.130 0.00 0.00 0.00 4.02
2908 6491 5.430886 ACAAAATTCTACCCATACCCGTAC 58.569 41.667 0.00 0.00 0.00 3.67
2909 6492 4.694760 AAATTCTACCCATACCCGTACC 57.305 45.455 0.00 0.00 0.00 3.34
2910 6493 2.086610 TTCTACCCATACCCGTACCC 57.913 55.000 0.00 0.00 0.00 3.69
2911 6494 0.932955 TCTACCCATACCCGTACCCA 59.067 55.000 0.00 0.00 0.00 4.51
2912 6495 1.043022 CTACCCATACCCGTACCCAC 58.957 60.000 0.00 0.00 0.00 4.61
2930 6513 3.881089 CCCACGGGTATGAAACTTTATCC 59.119 47.826 0.00 0.00 0.00 2.59
2931 6514 4.519213 CCACGGGTATGAAACTTTATCCA 58.481 43.478 0.00 0.00 0.00 3.41
2932 6515 5.130350 CCACGGGTATGAAACTTTATCCAT 58.870 41.667 0.00 0.00 0.00 3.41
2933 6516 5.008613 CCACGGGTATGAAACTTTATCCATG 59.991 44.000 0.00 0.00 0.00 3.66
2934 6517 4.578928 ACGGGTATGAAACTTTATCCATGC 59.421 41.667 0.00 0.00 0.00 4.06
2935 6518 4.023193 CGGGTATGAAACTTTATCCATGCC 60.023 45.833 0.00 0.00 39.86 4.40
2936 6519 5.453567 GGTATGAAACTTTATCCATGCCC 57.546 43.478 0.00 0.00 36.29 5.36
2937 6520 4.892934 GGTATGAAACTTTATCCATGCCCA 59.107 41.667 0.00 0.00 36.29 5.36
2938 6521 5.539955 GGTATGAAACTTTATCCATGCCCAT 59.460 40.000 0.00 0.00 36.29 4.00
2939 6522 6.719370 GGTATGAAACTTTATCCATGCCCATA 59.281 38.462 0.00 0.00 36.29 2.74
2940 6523 6.655078 ATGAAACTTTATCCATGCCCATAC 57.345 37.500 0.00 0.00 0.00 2.39
2941 6524 4.892934 TGAAACTTTATCCATGCCCATACC 59.107 41.667 0.00 0.00 0.00 2.73
2942 6525 3.525800 ACTTTATCCATGCCCATACCC 57.474 47.619 0.00 0.00 0.00 3.69
2943 6526 2.224769 ACTTTATCCATGCCCATACCCG 60.225 50.000 0.00 0.00 0.00 5.28
2944 6527 1.735926 TTATCCATGCCCATACCCGA 58.264 50.000 0.00 0.00 0.00 5.14
2945 6528 0.981183 TATCCATGCCCATACCCGAC 59.019 55.000 0.00 0.00 0.00 4.79
2946 6529 2.111999 ATCCATGCCCATACCCGACG 62.112 60.000 0.00 0.00 0.00 5.12
2947 6530 2.280797 CATGCCCATACCCGACGG 60.281 66.667 6.99 6.99 0.00 4.79
2957 6540 2.106332 CCCGACGGGTACTCATGC 59.894 66.667 25.54 0.00 38.25 4.06
2958 6541 2.106332 CCGACGGGTACTCATGCC 59.894 66.667 5.81 0.00 0.00 4.40
2963 6546 4.218722 GGGTACTCATGCCCGTTG 57.781 61.111 0.00 0.00 41.48 4.10
2964 6547 1.451387 GGGTACTCATGCCCGTTGG 60.451 63.158 0.00 0.00 41.48 3.77
2966 6549 1.298667 GTACTCATGCCCGTTGGGT 59.701 57.895 3.40 0.00 46.51 4.51
2967 6550 0.538118 GTACTCATGCCCGTTGGGTA 59.462 55.000 3.40 0.00 46.51 3.69
2968 6551 0.538118 TACTCATGCCCGTTGGGTAC 59.462 55.000 3.40 0.00 46.51 3.34
2991 6574 2.483014 CCCAACGGGTAGATCAAACA 57.517 50.000 0.00 0.00 38.25 2.83
2992 6575 2.785562 CCCAACGGGTAGATCAAACAA 58.214 47.619 0.00 0.00 38.25 2.83
2993 6576 3.352648 CCCAACGGGTAGATCAAACAAT 58.647 45.455 0.00 0.00 38.25 2.71
2994 6577 4.519213 CCCAACGGGTAGATCAAACAATA 58.481 43.478 0.00 0.00 38.25 1.90
2995 6578 5.130350 CCCAACGGGTAGATCAAACAATAT 58.870 41.667 0.00 0.00 38.25 1.28
2996 6579 6.292923 CCCAACGGGTAGATCAAACAATATA 58.707 40.000 0.00 0.00 38.25 0.86
2997 6580 6.204108 CCCAACGGGTAGATCAAACAATATAC 59.796 42.308 0.00 0.00 38.25 1.47
2998 6581 6.764085 CCAACGGGTAGATCAAACAATATACA 59.236 38.462 0.00 0.00 0.00 2.29
2999 6582 7.281324 CCAACGGGTAGATCAAACAATATACAA 59.719 37.037 0.00 0.00 0.00 2.41
3000 6583 8.335356 CAACGGGTAGATCAAACAATATACAAG 58.665 37.037 0.00 0.00 0.00 3.16
3001 6584 7.562135 ACGGGTAGATCAAACAATATACAAGT 58.438 34.615 0.00 0.00 0.00 3.16
3002 6585 8.044908 ACGGGTAGATCAAACAATATACAAGTT 58.955 33.333 0.00 0.00 0.00 2.66
3003 6586 9.537192 CGGGTAGATCAAACAATATACAAGTTA 57.463 33.333 0.00 0.00 0.00 2.24
3038 6621 9.929722 TTTACATTTATCGATAGCACATTTGAC 57.070 29.630 5.09 0.00 0.00 3.18
3039 6622 7.552458 ACATTTATCGATAGCACATTTGACA 57.448 32.000 5.09 0.00 0.00 3.58
3040 6623 7.984391 ACATTTATCGATAGCACATTTGACAA 58.016 30.769 5.09 0.00 0.00 3.18
3041 6624 8.458052 ACATTTATCGATAGCACATTTGACAAA 58.542 29.630 5.09 2.48 0.00 2.83
3042 6625 9.288124 CATTTATCGATAGCACATTTGACAAAA 57.712 29.630 4.41 0.00 0.00 2.44
3043 6626 9.853555 ATTTATCGATAGCACATTTGACAAAAA 57.146 25.926 4.41 0.00 0.00 1.94
3088 6671 9.973450 ACAGATAGATGAGTACATGACAATTAC 57.027 33.333 0.00 0.00 36.82 1.89
3089 6672 9.416794 CAGATAGATGAGTACATGACAATTACC 57.583 37.037 0.00 0.00 36.82 2.85
3090 6673 9.373450 AGATAGATGAGTACATGACAATTACCT 57.627 33.333 0.00 0.00 36.82 3.08
3091 6674 9.632807 GATAGATGAGTACATGACAATTACCTC 57.367 37.037 0.00 0.00 36.82 3.85
3092 6675 7.423844 AGATGAGTACATGACAATTACCTCA 57.576 36.000 0.00 0.00 36.82 3.86
3093 6676 7.851228 AGATGAGTACATGACAATTACCTCAA 58.149 34.615 0.00 0.00 36.82 3.02
3094 6677 8.489489 AGATGAGTACATGACAATTACCTCAAT 58.511 33.333 0.00 0.00 36.82 2.57
3095 6678 9.113838 GATGAGTACATGACAATTACCTCAATT 57.886 33.333 0.00 0.00 35.65 2.32
3096 6679 8.862325 TGAGTACATGACAATTACCTCAATTT 57.138 30.769 0.00 0.00 34.49 1.82
3097 6680 9.952030 TGAGTACATGACAATTACCTCAATTTA 57.048 29.630 0.00 0.00 34.49 1.40
3123 6706 9.612066 AAATTGACAATTGGTGAACTTTAACAT 57.388 25.926 14.05 0.00 0.00 2.71
3125 6708 9.912634 ATTGACAATTGGTGAACTTTAACATAG 57.087 29.630 10.83 0.00 0.00 2.23
3126 6709 7.367285 TGACAATTGGTGAACTTTAACATAGC 58.633 34.615 10.83 0.00 0.00 2.97
3127 6710 7.230510 TGACAATTGGTGAACTTTAACATAGCT 59.769 33.333 10.83 0.00 0.00 3.32
3128 6711 7.951591 ACAATTGGTGAACTTTAACATAGCTT 58.048 30.769 10.83 0.00 0.00 3.74
3129 6712 8.082242 ACAATTGGTGAACTTTAACATAGCTTC 58.918 33.333 10.83 0.00 0.00 3.86
3130 6713 7.759489 ATTGGTGAACTTTAACATAGCTTCA 57.241 32.000 0.00 0.00 0.00 3.02
3131 6714 6.554334 TGGTGAACTTTAACATAGCTTCAC 57.446 37.500 0.00 0.00 35.41 3.18
3132 6715 6.058833 TGGTGAACTTTAACATAGCTTCACA 58.941 36.000 9.38 0.00 36.49 3.58
3133 6716 6.544197 TGGTGAACTTTAACATAGCTTCACAA 59.456 34.615 9.38 0.00 36.49 3.33
3134 6717 7.067615 TGGTGAACTTTAACATAGCTTCACAAA 59.932 33.333 9.38 0.00 36.49 2.83
3135 6718 7.378728 GGTGAACTTTAACATAGCTTCACAAAC 59.621 37.037 9.38 0.00 36.49 2.93
3136 6719 8.129211 GTGAACTTTAACATAGCTTCACAAACT 58.871 33.333 0.00 0.00 35.77 2.66
3137 6720 8.342634 TGAACTTTAACATAGCTTCACAAACTC 58.657 33.333 0.00 0.00 0.00 3.01
3138 6721 7.801716 ACTTTAACATAGCTTCACAAACTCA 57.198 32.000 0.00 0.00 0.00 3.41
3139 6722 7.639945 ACTTTAACATAGCTTCACAAACTCAC 58.360 34.615 0.00 0.00 0.00 3.51
3140 6723 4.732285 AACATAGCTTCACAAACTCACG 57.268 40.909 0.00 0.00 0.00 4.35
3141 6724 3.990092 ACATAGCTTCACAAACTCACGA 58.010 40.909 0.00 0.00 0.00 4.35
3142 6725 3.741344 ACATAGCTTCACAAACTCACGAC 59.259 43.478 0.00 0.00 0.00 4.34
3143 6726 2.309528 AGCTTCACAAACTCACGACA 57.690 45.000 0.00 0.00 0.00 4.35
3144 6727 1.933853 AGCTTCACAAACTCACGACAC 59.066 47.619 0.00 0.00 0.00 3.67
3145 6728 1.663643 GCTTCACAAACTCACGACACA 59.336 47.619 0.00 0.00 0.00 3.72
3146 6729 2.536928 GCTTCACAAACTCACGACACAC 60.537 50.000 0.00 0.00 0.00 3.82
3147 6730 2.665649 TCACAAACTCACGACACACT 57.334 45.000 0.00 0.00 0.00 3.55
3148 6731 2.967362 TCACAAACTCACGACACACTT 58.033 42.857 0.00 0.00 0.00 3.16
3149 6732 2.927477 TCACAAACTCACGACACACTTC 59.073 45.455 0.00 0.00 0.00 3.01
3150 6733 2.670905 CACAAACTCACGACACACTTCA 59.329 45.455 0.00 0.00 0.00 3.02
3151 6734 2.671396 ACAAACTCACGACACACTTCAC 59.329 45.455 0.00 0.00 0.00 3.18
3152 6735 1.935933 AACTCACGACACACTTCACC 58.064 50.000 0.00 0.00 0.00 4.02
3153 6736 0.821517 ACTCACGACACACTTCACCA 59.178 50.000 0.00 0.00 0.00 4.17
3154 6737 1.206132 ACTCACGACACACTTCACCAA 59.794 47.619 0.00 0.00 0.00 3.67
3155 6738 2.276201 CTCACGACACACTTCACCAAA 58.724 47.619 0.00 0.00 0.00 3.28
3156 6739 2.872245 CTCACGACACACTTCACCAAAT 59.128 45.455 0.00 0.00 0.00 2.32
3157 6740 4.055360 CTCACGACACACTTCACCAAATA 58.945 43.478 0.00 0.00 0.00 1.40
3158 6741 4.443621 TCACGACACACTTCACCAAATAA 58.556 39.130 0.00 0.00 0.00 1.40
3159 6742 4.271533 TCACGACACACTTCACCAAATAAC 59.728 41.667 0.00 0.00 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 1.371558 GGAGACAAGCGAACAGGGT 59.628 57.895 0.00 0.00 0.00 4.34
169 172 8.468399 GCTACAGAGTACTACTTTTACATTCCT 58.532 37.037 0.00 0.00 0.00 3.36
170 173 8.248945 TGCTACAGAGTACTACTTTTACATTCC 58.751 37.037 0.00 0.00 0.00 3.01
224 416 5.561919 CGAAATGGTTGATGGTCTTTTCGAA 60.562 40.000 13.97 0.00 43.88 3.71
229 421 2.825532 CCCGAAATGGTTGATGGTCTTT 59.174 45.455 0.00 0.00 35.15 2.52
258 450 0.247736 TTTGCAACCAACACCACCAC 59.752 50.000 0.00 0.00 0.00 4.16
259 451 1.134580 CATTTGCAACCAACACCACCA 60.135 47.619 0.00 0.00 0.00 4.17
260 452 1.134551 ACATTTGCAACCAACACCACC 60.135 47.619 0.00 0.00 0.00 4.61
292 484 0.537143 GCCCATGTGCCATTATCGGA 60.537 55.000 0.00 0.00 0.00 4.55
294 486 0.594602 CTGCCCATGTGCCATTATCG 59.405 55.000 0.00 0.00 0.00 2.92
300 492 1.924145 TATCTGCTGCCCATGTGCCA 61.924 55.000 0.00 0.00 0.00 4.92
360 554 1.465387 CGCTCATAGTCGGCTACCTAG 59.535 57.143 0.00 0.00 0.00 3.02
361 555 1.202734 ACGCTCATAGTCGGCTACCTA 60.203 52.381 0.00 0.00 0.00 3.08
362 556 0.465824 ACGCTCATAGTCGGCTACCT 60.466 55.000 0.00 0.00 0.00 3.08
462 668 1.278537 TGTCCATGAGCAGATCCACA 58.721 50.000 0.00 0.00 0.00 4.17
487 694 2.372264 TCTCATGGCATCAGAAAAGGC 58.628 47.619 0.00 0.00 0.00 4.35
498 705 1.065926 AGCTTGATCGTTCTCATGGCA 60.066 47.619 0.00 0.00 31.19 4.92
632 849 4.160635 GGCGACGTTGCCGGAATG 62.161 66.667 30.41 4.89 46.75 2.67
845 1068 1.666700 TGTAGTGCGCTCGTTTTGTTT 59.333 42.857 9.73 0.00 0.00 2.83
911 1134 4.790962 ATCAGCCAGGCCTGTGCG 62.791 66.667 30.63 24.46 38.85 5.34
912 1135 2.362120 AATCAGCCAGGCCTGTGC 60.362 61.111 30.63 29.58 34.47 4.57
913 1136 1.001764 TCAATCAGCCAGGCCTGTG 60.002 57.895 30.63 22.79 34.47 3.66
914 1137 1.001641 GTCAATCAGCCAGGCCTGT 60.002 57.895 30.63 11.35 34.47 4.00
918 1151 1.067354 CCAAAAGTCAATCAGCCAGGC 60.067 52.381 1.84 1.84 0.00 4.85
950 1183 4.007644 TGTGTGAGCTCGGCAGGG 62.008 66.667 9.64 0.00 0.00 4.45
951 1184 2.740055 GTGTGTGAGCTCGGCAGG 60.740 66.667 9.64 0.00 0.00 4.85
952 1185 2.740055 GGTGTGTGAGCTCGGCAG 60.740 66.667 9.64 0.00 0.00 4.85
953 1186 4.314440 GGGTGTGTGAGCTCGGCA 62.314 66.667 9.64 7.98 0.00 5.69
954 1187 4.314440 TGGGTGTGTGAGCTCGGC 62.314 66.667 9.64 5.16 0.00 5.54
955 1188 2.357517 GTGGGTGTGTGAGCTCGG 60.358 66.667 9.64 0.00 0.00 4.63
1542 1775 3.816367 GATGGTAGCCAGCCTCGCC 62.816 68.421 0.00 0.00 36.75 5.54
1719 1952 2.811317 GGCGAGAACAGCACCGAG 60.811 66.667 0.00 0.00 36.08 4.63
1749 1982 2.636412 CCAGCTGAGACCGTTCGGA 61.636 63.158 17.39 0.00 0.00 4.55
1879 2112 1.006020 AAGGGGTCGGAGTAGTAGGT 58.994 55.000 0.00 0.00 0.00 3.08
1977 2210 2.504519 GCGGCCTAAAGATCCGGT 59.495 61.111 0.00 0.00 43.11 5.28
2104 2337 0.976073 ACCTGTCATCACTACGGGGG 60.976 60.000 6.08 0.00 46.05 5.40
2244 2497 3.321396 GCCGGCTTCTAGTAACCTTCTAT 59.679 47.826 22.15 0.00 0.00 1.98
2246 2499 1.481363 GCCGGCTTCTAGTAACCTTCT 59.519 52.381 22.15 0.00 0.00 2.85
2247 2500 1.472904 GGCCGGCTTCTAGTAACCTTC 60.473 57.143 28.56 0.00 0.00 3.46
2248 2501 0.540454 GGCCGGCTTCTAGTAACCTT 59.460 55.000 28.56 0.00 0.00 3.50
2249 2502 1.673808 CGGCCGGCTTCTAGTAACCT 61.674 60.000 28.56 0.00 0.00 3.50
2250 2503 1.227176 CGGCCGGCTTCTAGTAACC 60.227 63.158 28.56 3.90 0.00 2.85
2251 2504 0.527169 GTCGGCCGGCTTCTAGTAAC 60.527 60.000 28.56 6.50 0.00 2.50
2252 2505 1.669999 GGTCGGCCGGCTTCTAGTAA 61.670 60.000 31.31 0.00 0.00 2.24
2253 2506 2.123428 GGTCGGCCGGCTTCTAGTA 61.123 63.158 31.31 0.34 0.00 1.82
2254 2507 3.459063 GGTCGGCCGGCTTCTAGT 61.459 66.667 31.31 0.00 0.00 2.57
2267 2520 4.090588 TAAGCAAGGGGGCGGTCG 62.091 66.667 0.00 0.00 39.27 4.79
2268 2521 1.984288 ATCTAAGCAAGGGGGCGGTC 61.984 60.000 0.00 0.00 39.27 4.79
2269 2522 1.571773 AATCTAAGCAAGGGGGCGGT 61.572 55.000 0.00 0.00 39.27 5.68
2270 2523 0.395724 AAATCTAAGCAAGGGGGCGG 60.396 55.000 0.00 0.00 39.27 6.13
2271 2524 1.474330 AAAATCTAAGCAAGGGGGCG 58.526 50.000 0.00 0.00 39.27 6.13
2272 2525 3.099905 AGAAAAATCTAAGCAAGGGGGC 58.900 45.455 0.00 0.00 0.00 5.80
2273 2526 4.772100 TCAAGAAAAATCTAAGCAAGGGGG 59.228 41.667 0.00 0.00 0.00 5.40
2274 2527 5.982890 TCAAGAAAAATCTAAGCAAGGGG 57.017 39.130 0.00 0.00 0.00 4.79
2305 2558 9.793259 ACAAGAGATGTAAATCCAAAGAAACTA 57.207 29.630 0.00 0.00 41.63 2.24
2306 2559 8.571336 CACAAGAGATGTAAATCCAAAGAAACT 58.429 33.333 0.00 0.00 41.46 2.66
2307 2560 8.352942 ACACAAGAGATGTAAATCCAAAGAAAC 58.647 33.333 0.00 0.00 41.46 2.78
2308 2561 8.463930 ACACAAGAGATGTAAATCCAAAGAAA 57.536 30.769 0.00 0.00 41.46 2.52
2309 2562 9.567776 TTACACAAGAGATGTAAATCCAAAGAA 57.432 29.630 0.00 0.00 41.46 2.52
2310 2563 9.219603 CTTACACAAGAGATGTAAATCCAAAGA 57.780 33.333 0.00 0.00 41.46 2.52
2311 2564 7.965107 GCTTACACAAGAGATGTAAATCCAAAG 59.035 37.037 0.00 0.00 41.46 2.77
2312 2565 7.665559 AGCTTACACAAGAGATGTAAATCCAAA 59.334 33.333 0.00 0.00 41.46 3.28
2313 2566 7.119699 CAGCTTACACAAGAGATGTAAATCCAA 59.880 37.037 0.00 0.00 41.46 3.53
2314 2567 6.595326 CAGCTTACACAAGAGATGTAAATCCA 59.405 38.462 0.00 0.00 41.46 3.41
2315 2568 6.818644 TCAGCTTACACAAGAGATGTAAATCC 59.181 38.462 0.00 0.00 41.46 3.01
2316 2569 7.010923 CCTCAGCTTACACAAGAGATGTAAATC 59.989 40.741 0.00 0.00 41.46 2.17
2317 2570 6.820656 CCTCAGCTTACACAAGAGATGTAAAT 59.179 38.462 0.00 0.00 41.46 1.40
2318 2571 6.166279 CCTCAGCTTACACAAGAGATGTAAA 58.834 40.000 0.00 0.00 41.46 2.01
2319 2572 5.337571 CCCTCAGCTTACACAAGAGATGTAA 60.338 44.000 0.00 0.00 41.46 2.41
2320 2573 4.160439 CCCTCAGCTTACACAAGAGATGTA 59.840 45.833 0.00 0.00 41.46 2.29
2321 2574 3.055530 CCCTCAGCTTACACAAGAGATGT 60.056 47.826 0.00 0.00 45.34 3.06
2322 2575 3.196469 TCCCTCAGCTTACACAAGAGATG 59.804 47.826 0.00 0.00 33.20 2.90
2323 2576 3.445008 TCCCTCAGCTTACACAAGAGAT 58.555 45.455 0.00 0.00 33.20 2.75
2324 2577 2.889512 TCCCTCAGCTTACACAAGAGA 58.110 47.619 0.00 0.00 33.20 3.10
2325 2578 3.685139 TTCCCTCAGCTTACACAAGAG 57.315 47.619 0.00 0.00 33.20 2.85
2326 2579 3.582647 TCATTCCCTCAGCTTACACAAGA 59.417 43.478 0.00 0.00 33.20 3.02
2327 2580 3.942829 TCATTCCCTCAGCTTACACAAG 58.057 45.455 0.00 0.00 34.66 3.16
2328 2581 4.574674 ATCATTCCCTCAGCTTACACAA 57.425 40.909 0.00 0.00 0.00 3.33
2329 2582 4.263462 ACAATCATTCCCTCAGCTTACACA 60.263 41.667 0.00 0.00 0.00 3.72
2330 2583 4.265073 ACAATCATTCCCTCAGCTTACAC 58.735 43.478 0.00 0.00 0.00 2.90
2331 2584 4.574674 ACAATCATTCCCTCAGCTTACA 57.425 40.909 0.00 0.00 0.00 2.41
2332 2585 5.415701 TCAAACAATCATTCCCTCAGCTTAC 59.584 40.000 0.00 0.00 0.00 2.34
2333 2586 5.569355 TCAAACAATCATTCCCTCAGCTTA 58.431 37.500 0.00 0.00 0.00 3.09
2334 2587 4.410099 TCAAACAATCATTCCCTCAGCTT 58.590 39.130 0.00 0.00 0.00 3.74
2343 2667 7.707464 TCATGGTGCATTATCAAACAATCATTC 59.293 33.333 0.00 0.00 0.00 2.67
2389 2713 6.609237 ACACATCATCAATGGAGTAATTCG 57.391 37.500 0.00 0.00 39.90 3.34
2401 2725 7.167535 TGACCTAATCAAGAACACATCATCAA 58.832 34.615 0.00 0.00 33.02 2.57
2410 2734 5.164620 TCAGCATGACCTAATCAAGAACA 57.835 39.130 0.00 0.00 42.56 3.18
2441 2765 5.646467 TCTACACTTGTCAAGCGTAAAAC 57.354 39.130 12.66 0.00 0.00 2.43
2443 2767 7.949903 TTATTCTACACTTGTCAAGCGTAAA 57.050 32.000 12.66 10.37 0.00 2.01
2457 2784 5.348986 TCTGATCGCCACTTTATTCTACAC 58.651 41.667 0.00 0.00 0.00 2.90
2478 2805 7.016268 TCCTGTTTTACTACCAAGAGAACATCT 59.984 37.037 0.00 0.00 41.27 2.90
2486 2813 8.258007 CACTATCATCCTGTTTTACTACCAAGA 58.742 37.037 0.00 0.00 0.00 3.02
2487 2814 7.011482 GCACTATCATCCTGTTTTACTACCAAG 59.989 40.741 0.00 0.00 0.00 3.61
2488 2815 6.821665 GCACTATCATCCTGTTTTACTACCAA 59.178 38.462 0.00 0.00 0.00 3.67
2489 2816 6.070481 TGCACTATCATCCTGTTTTACTACCA 60.070 38.462 0.00 0.00 0.00 3.25
2492 2819 6.483307 GCATGCACTATCATCCTGTTTTACTA 59.517 38.462 14.21 0.00 0.00 1.82
2493 2820 5.297776 GCATGCACTATCATCCTGTTTTACT 59.702 40.000 14.21 0.00 0.00 2.24
2495 2822 5.192176 TGCATGCACTATCATCCTGTTTTA 58.808 37.500 18.46 0.00 0.00 1.52
2496 2823 4.018490 TGCATGCACTATCATCCTGTTTT 58.982 39.130 18.46 0.00 0.00 2.43
2498 2825 3.118149 TCTGCATGCACTATCATCCTGTT 60.118 43.478 18.46 0.00 0.00 3.16
2499 2826 2.436911 TCTGCATGCACTATCATCCTGT 59.563 45.455 18.46 0.00 0.00 4.00
2500 2827 3.067833 CTCTGCATGCACTATCATCCTG 58.932 50.000 18.46 2.81 0.00 3.86
2501 2828 2.704596 ACTCTGCATGCACTATCATCCT 59.295 45.455 18.46 0.00 0.00 3.24
2502 2829 3.123157 ACTCTGCATGCACTATCATCC 57.877 47.619 18.46 0.00 0.00 3.51
2503 2830 4.573607 TCAAACTCTGCATGCACTATCATC 59.426 41.667 18.46 0.00 0.00 2.92
2504 2831 4.520179 TCAAACTCTGCATGCACTATCAT 58.480 39.130 18.46 0.00 0.00 2.45
2505 2832 3.941573 TCAAACTCTGCATGCACTATCA 58.058 40.909 18.46 0.00 0.00 2.15
2506 2833 4.334759 ACATCAAACTCTGCATGCACTATC 59.665 41.667 18.46 0.00 0.00 2.08
2508 2835 3.437741 CACATCAAACTCTGCATGCACTA 59.562 43.478 18.46 7.07 0.00 2.74
2560 2926 2.039216 TGTAAACGGAATCTTGGCCAGA 59.961 45.455 5.11 6.43 35.33 3.86
2677 6260 0.954452 CAAAACTGGAGAGCACCCAC 59.046 55.000 0.00 0.00 0.00 4.61
2684 6267 7.044798 CCTAGAACTAATCCAAAACTGGAGAG 58.955 42.308 0.00 2.79 41.88 3.20
2734 6317 7.354751 AGATGCCCTAAGTTTACTCTAGAAG 57.645 40.000 0.00 0.00 0.00 2.85
2748 6331 1.133699 CCTGCAATGGAGATGCCCTAA 60.134 52.381 2.50 0.00 43.16 2.69
2752 6335 2.496291 GCCCTGCAATGGAGATGCC 61.496 63.158 2.50 0.00 43.16 4.40
2753 6336 2.842256 CGCCCTGCAATGGAGATGC 61.842 63.158 2.50 4.80 44.08 3.91
2754 6337 2.842256 GCGCCCTGCAATGGAGATG 61.842 63.158 2.50 0.00 45.45 2.90
2755 6338 2.517875 GCGCCCTGCAATGGAGAT 60.518 61.111 2.50 0.00 45.45 2.75
2779 6362 4.745751 TTACGAACCTGGCGCCCG 62.746 66.667 26.77 22.08 0.00 6.13
2780 6363 2.124860 ATTACGAACCTGGCGCCC 60.125 61.111 26.77 6.80 0.00 6.13
2781 6364 2.178235 GGATTACGAACCTGGCGCC 61.178 63.158 22.73 22.73 0.00 6.53
2782 6365 2.178235 GGGATTACGAACCTGGCGC 61.178 63.158 0.00 0.00 0.00 6.53
2783 6366 1.881252 CGGGATTACGAACCTGGCG 60.881 63.158 0.00 0.00 35.47 5.69
2784 6367 1.523032 CCGGGATTACGAACCTGGC 60.523 63.158 0.00 0.00 44.34 4.85
2785 6368 4.848685 CCGGGATTACGAACCTGG 57.151 61.111 0.00 0.00 44.78 4.45
2786 6369 2.026641 TCTACCGGGATTACGAACCTG 58.973 52.381 6.32 0.00 35.47 4.00
2787 6370 2.442236 TCTACCGGGATTACGAACCT 57.558 50.000 6.32 0.00 35.47 3.50
2788 6371 3.740631 AATCTACCGGGATTACGAACC 57.259 47.619 6.32 0.00 34.59 3.62
2789 6372 4.233005 GCTAATCTACCGGGATTACGAAC 58.767 47.826 6.32 0.00 37.20 3.95
2790 6373 3.058016 CGCTAATCTACCGGGATTACGAA 60.058 47.826 6.32 0.00 36.30 3.85
2791 6374 2.485426 CGCTAATCTACCGGGATTACGA 59.515 50.000 6.32 0.00 36.30 3.43
2792 6375 2.415090 CCGCTAATCTACCGGGATTACG 60.415 54.545 6.32 14.74 38.42 3.18
2793 6376 2.560105 ACCGCTAATCTACCGGGATTAC 59.440 50.000 6.32 5.02 45.93 1.89
2794 6377 2.880443 ACCGCTAATCTACCGGGATTA 58.120 47.619 6.32 9.59 45.93 1.75
2795 6378 1.713297 ACCGCTAATCTACCGGGATT 58.287 50.000 6.32 8.86 45.93 3.01
2796 6379 2.592102 TACCGCTAATCTACCGGGAT 57.408 50.000 6.32 0.00 45.93 3.85
2797 6380 2.233271 CTTACCGCTAATCTACCGGGA 58.767 52.381 6.32 0.00 45.93 5.14
2798 6381 1.271656 CCTTACCGCTAATCTACCGGG 59.728 57.143 6.32 0.00 45.93 5.73
2799 6382 2.233271 TCCTTACCGCTAATCTACCGG 58.767 52.381 0.00 0.00 46.97 5.28
2800 6383 3.367087 CCATCCTTACCGCTAATCTACCG 60.367 52.174 0.00 0.00 0.00 4.02
2801 6384 3.616802 GCCATCCTTACCGCTAATCTACC 60.617 52.174 0.00 0.00 0.00 3.18
2802 6385 3.006537 TGCCATCCTTACCGCTAATCTAC 59.993 47.826 0.00 0.00 0.00 2.59
2803 6386 3.236047 TGCCATCCTTACCGCTAATCTA 58.764 45.455 0.00 0.00 0.00 1.98
2804 6387 2.047061 TGCCATCCTTACCGCTAATCT 58.953 47.619 0.00 0.00 0.00 2.40
2805 6388 2.543777 TGCCATCCTTACCGCTAATC 57.456 50.000 0.00 0.00 0.00 1.75
2806 6389 3.149196 CATTGCCATCCTTACCGCTAAT 58.851 45.455 0.00 0.00 0.00 1.73
2807 6390 2.571212 CATTGCCATCCTTACCGCTAA 58.429 47.619 0.00 0.00 0.00 3.09
2808 6391 1.202758 CCATTGCCATCCTTACCGCTA 60.203 52.381 0.00 0.00 0.00 4.26
2809 6392 0.466189 CCATTGCCATCCTTACCGCT 60.466 55.000 0.00 0.00 0.00 5.52
2810 6393 0.465460 TCCATTGCCATCCTTACCGC 60.465 55.000 0.00 0.00 0.00 5.68
2811 6394 2.276732 ATCCATTGCCATCCTTACCG 57.723 50.000 0.00 0.00 0.00 4.02
2812 6395 4.074970 CACTATCCATTGCCATCCTTACC 58.925 47.826 0.00 0.00 0.00 2.85
2813 6396 4.718961 ACACTATCCATTGCCATCCTTAC 58.281 43.478 0.00 0.00 0.00 2.34
2814 6397 6.475504 CATACACTATCCATTGCCATCCTTA 58.524 40.000 0.00 0.00 0.00 2.69
2815 6398 3.959495 ACACTATCCATTGCCATCCTT 57.041 42.857 0.00 0.00 0.00 3.36
2816 6399 4.263639 CCATACACTATCCATTGCCATCCT 60.264 45.833 0.00 0.00 0.00 3.24
2817 6400 4.012374 CCATACACTATCCATTGCCATCC 58.988 47.826 0.00 0.00 0.00 3.51
2818 6401 4.012374 CCCATACACTATCCATTGCCATC 58.988 47.826 0.00 0.00 0.00 3.51
2819 6402 3.245371 CCCCATACACTATCCATTGCCAT 60.245 47.826 0.00 0.00 0.00 4.40
2820 6403 2.108075 CCCCATACACTATCCATTGCCA 59.892 50.000 0.00 0.00 0.00 4.92
2821 6404 2.795329 CCCCATACACTATCCATTGCC 58.205 52.381 0.00 0.00 0.00 4.52
2822 6405 2.162681 GCCCCATACACTATCCATTGC 58.837 52.381 0.00 0.00 0.00 3.56
2823 6406 2.426522 CGCCCCATACACTATCCATTG 58.573 52.381 0.00 0.00 0.00 2.82
2824 6407 1.351017 CCGCCCCATACACTATCCATT 59.649 52.381 0.00 0.00 0.00 3.16
2825 6408 0.984230 CCGCCCCATACACTATCCAT 59.016 55.000 0.00 0.00 0.00 3.41
2826 6409 1.125093 CCCGCCCCATACACTATCCA 61.125 60.000 0.00 0.00 0.00 3.41
2827 6410 1.125711 ACCCGCCCCATACACTATCC 61.126 60.000 0.00 0.00 0.00 2.59
2828 6411 1.549170 CTACCCGCCCCATACACTATC 59.451 57.143 0.00 0.00 0.00 2.08
2829 6412 1.148446 TCTACCCGCCCCATACACTAT 59.852 52.381 0.00 0.00 0.00 2.12
2830 6413 0.557238 TCTACCCGCCCCATACACTA 59.443 55.000 0.00 0.00 0.00 2.74
2831 6414 0.759436 CTCTACCCGCCCCATACACT 60.759 60.000 0.00 0.00 0.00 3.55
2832 6415 1.746517 CTCTACCCGCCCCATACAC 59.253 63.158 0.00 0.00 0.00 2.90
2833 6416 2.138179 GCTCTACCCGCCCCATACA 61.138 63.158 0.00 0.00 0.00 2.29
2834 6417 1.692173 TTGCTCTACCCGCCCCATAC 61.692 60.000 0.00 0.00 0.00 2.39
2835 6418 0.766674 ATTGCTCTACCCGCCCCATA 60.767 55.000 0.00 0.00 0.00 2.74
2836 6419 0.766674 TATTGCTCTACCCGCCCCAT 60.767 55.000 0.00 0.00 0.00 4.00
2837 6420 1.383386 TATTGCTCTACCCGCCCCA 60.383 57.895 0.00 0.00 0.00 4.96
2838 6421 1.070957 GTATTGCTCTACCCGCCCC 59.929 63.158 0.00 0.00 0.00 5.80
2839 6422 1.070957 GGTATTGCTCTACCCGCCC 59.929 63.158 4.46 0.00 36.00 6.13
2840 6423 0.396811 ATGGTATTGCTCTACCCGCC 59.603 55.000 11.32 0.00 40.47 6.13
2841 6424 2.299297 AGTATGGTATTGCTCTACCCGC 59.701 50.000 11.32 3.94 40.47 6.13
2842 6425 3.572682 TGAGTATGGTATTGCTCTACCCG 59.427 47.826 11.32 0.00 40.47 5.28
2843 6426 5.746990 ATGAGTATGGTATTGCTCTACCC 57.253 43.478 11.32 0.00 40.47 3.69
2844 6427 6.351117 GGGTATGAGTATGGTATTGCTCTACC 60.351 46.154 7.99 7.99 41.39 3.18
2845 6428 6.625300 CGGGTATGAGTATGGTATTGCTCTAC 60.625 46.154 0.00 0.00 0.00 2.59
2846 6429 5.417894 CGGGTATGAGTATGGTATTGCTCTA 59.582 44.000 0.00 0.00 0.00 2.43
2847 6430 4.220821 CGGGTATGAGTATGGTATTGCTCT 59.779 45.833 0.00 0.00 0.00 4.09
2848 6431 4.021368 ACGGGTATGAGTATGGTATTGCTC 60.021 45.833 0.00 0.00 0.00 4.26
2849 6432 3.901844 ACGGGTATGAGTATGGTATTGCT 59.098 43.478 0.00 0.00 0.00 3.91
2850 6433 3.994392 CACGGGTATGAGTATGGTATTGC 59.006 47.826 0.00 0.00 0.00 3.56
2851 6434 5.209818 ACACGGGTATGAGTATGGTATTG 57.790 43.478 0.00 0.00 0.00 1.90
2852 6435 6.073314 ACTACACGGGTATGAGTATGGTATT 58.927 40.000 0.00 0.00 0.00 1.89
2853 6436 5.638133 ACTACACGGGTATGAGTATGGTAT 58.362 41.667 0.00 0.00 0.00 2.73
2854 6437 5.052693 ACTACACGGGTATGAGTATGGTA 57.947 43.478 0.00 0.00 0.00 3.25
2855 6438 3.887716 GACTACACGGGTATGAGTATGGT 59.112 47.826 0.00 0.00 0.00 3.55
2856 6439 3.887110 TGACTACACGGGTATGAGTATGG 59.113 47.826 0.00 0.00 0.00 2.74
2857 6440 5.509716 TTGACTACACGGGTATGAGTATG 57.490 43.478 0.00 0.00 0.00 2.39
2858 6441 5.010719 CCATTGACTACACGGGTATGAGTAT 59.989 44.000 0.00 0.00 0.00 2.12
2859 6442 4.340097 CCATTGACTACACGGGTATGAGTA 59.660 45.833 0.00 0.00 0.00 2.59
2860 6443 3.132289 CCATTGACTACACGGGTATGAGT 59.868 47.826 0.00 0.00 0.00 3.41
2861 6444 3.492656 CCCATTGACTACACGGGTATGAG 60.493 52.174 0.00 0.00 31.80 2.90
2862 6445 2.432874 CCCATTGACTACACGGGTATGA 59.567 50.000 0.00 0.00 31.80 2.15
2863 6446 2.833794 CCCATTGACTACACGGGTATG 58.166 52.381 0.00 0.00 31.80 2.39
2866 6449 2.768046 ACCCATTGACTACACGGGT 58.232 52.632 0.00 0.00 45.53 5.28
2867 6450 1.551430 TGTACCCATTGACTACACGGG 59.449 52.381 0.00 0.00 43.02 5.28
2868 6451 3.322211 TTGTACCCATTGACTACACGG 57.678 47.619 0.00 0.00 0.00 4.94
2869 6452 5.873179 ATTTTGTACCCATTGACTACACG 57.127 39.130 0.00 0.00 0.00 4.49
2870 6453 7.448748 AGAATTTTGTACCCATTGACTACAC 57.551 36.000 0.00 0.00 0.00 2.90
2871 6454 7.608761 GGTAGAATTTTGTACCCATTGACTACA 59.391 37.037 5.54 0.00 40.24 2.74
2872 6455 7.982224 GGTAGAATTTTGTACCCATTGACTAC 58.018 38.462 5.54 0.00 40.24 2.73
2882 6465 4.818005 CGGGTATGGGTAGAATTTTGTACC 59.182 45.833 7.87 7.87 44.08 3.34
2883 6466 5.430886 ACGGGTATGGGTAGAATTTTGTAC 58.569 41.667 0.00 0.00 0.00 2.90
2884 6467 5.697082 ACGGGTATGGGTAGAATTTTGTA 57.303 39.130 0.00 0.00 0.00 2.41
2885 6468 4.579647 ACGGGTATGGGTAGAATTTTGT 57.420 40.909 0.00 0.00 0.00 2.83
2886 6469 4.818005 GGTACGGGTATGGGTAGAATTTTG 59.182 45.833 0.00 0.00 0.00 2.44
2887 6470 4.141413 GGGTACGGGTATGGGTAGAATTTT 60.141 45.833 0.00 0.00 0.00 1.82
2888 6471 3.392285 GGGTACGGGTATGGGTAGAATTT 59.608 47.826 0.00 0.00 0.00 1.82
2889 6472 2.974794 GGGTACGGGTATGGGTAGAATT 59.025 50.000 0.00 0.00 0.00 2.17
2890 6473 2.090606 TGGGTACGGGTATGGGTAGAAT 60.091 50.000 0.00 0.00 0.00 2.40
2891 6474 1.290431 TGGGTACGGGTATGGGTAGAA 59.710 52.381 0.00 0.00 0.00 2.10
2892 6475 0.932955 TGGGTACGGGTATGGGTAGA 59.067 55.000 0.00 0.00 0.00 2.59
2893 6476 1.043022 GTGGGTACGGGTATGGGTAG 58.957 60.000 0.00 0.00 0.00 3.18
2894 6477 0.754957 CGTGGGTACGGGTATGGGTA 60.755 60.000 0.00 0.00 46.23 3.69
2895 6478 2.059786 CGTGGGTACGGGTATGGGT 61.060 63.158 0.00 0.00 46.23 4.51
2896 6479 2.816718 CGTGGGTACGGGTATGGG 59.183 66.667 0.00 0.00 46.23 4.00
2908 6491 3.881089 GGATAAAGTTTCATACCCGTGGG 59.119 47.826 2.58 2.58 42.03 4.61
2909 6492 4.519213 TGGATAAAGTTTCATACCCGTGG 58.481 43.478 0.00 0.00 0.00 4.94
2910 6493 5.505654 GCATGGATAAAGTTTCATACCCGTG 60.506 44.000 0.00 0.00 33.77 4.94
2911 6494 4.578928 GCATGGATAAAGTTTCATACCCGT 59.421 41.667 0.00 0.00 0.00 5.28
2912 6495 4.023193 GGCATGGATAAAGTTTCATACCCG 60.023 45.833 0.00 0.00 0.00 5.28
2913 6496 4.280929 GGGCATGGATAAAGTTTCATACCC 59.719 45.833 7.85 7.85 36.42 3.69
2914 6497 4.892934 TGGGCATGGATAAAGTTTCATACC 59.107 41.667 0.00 0.00 0.00 2.73
2915 6498 6.655078 ATGGGCATGGATAAAGTTTCATAC 57.345 37.500 0.00 0.00 0.00 2.39
2916 6499 6.719370 GGTATGGGCATGGATAAAGTTTCATA 59.281 38.462 0.00 0.00 0.00 2.15
2917 6500 5.539955 GGTATGGGCATGGATAAAGTTTCAT 59.460 40.000 0.00 0.00 0.00 2.57
2918 6501 4.892934 GGTATGGGCATGGATAAAGTTTCA 59.107 41.667 0.00 0.00 0.00 2.69
2919 6502 4.280929 GGGTATGGGCATGGATAAAGTTTC 59.719 45.833 0.00 0.00 0.00 2.78
2920 6503 4.223144 GGGTATGGGCATGGATAAAGTTT 58.777 43.478 0.00 0.00 0.00 2.66
2921 6504 3.750599 CGGGTATGGGCATGGATAAAGTT 60.751 47.826 0.00 0.00 0.00 2.66
2922 6505 2.224769 CGGGTATGGGCATGGATAAAGT 60.225 50.000 0.00 0.00 0.00 2.66
2923 6506 2.039746 TCGGGTATGGGCATGGATAAAG 59.960 50.000 0.00 0.00 0.00 1.85
2924 6507 2.058705 TCGGGTATGGGCATGGATAAA 58.941 47.619 0.00 0.00 0.00 1.40
2925 6508 1.349688 GTCGGGTATGGGCATGGATAA 59.650 52.381 0.00 0.00 0.00 1.75
2926 6509 0.981183 GTCGGGTATGGGCATGGATA 59.019 55.000 0.00 0.00 0.00 2.59
2927 6510 1.761174 GTCGGGTATGGGCATGGAT 59.239 57.895 0.00 0.00 0.00 3.41
2928 6511 2.802724 CGTCGGGTATGGGCATGGA 61.803 63.158 0.00 0.00 0.00 3.41
2929 6512 2.280797 CGTCGGGTATGGGCATGG 60.281 66.667 0.00 0.00 0.00 3.66
2930 6513 2.280797 CCGTCGGGTATGGGCATG 60.281 66.667 2.34 0.00 0.00 4.06
2941 6524 2.106332 GGCATGAGTACCCGTCGG 59.894 66.667 3.60 3.60 0.00 4.79
2942 6525 2.106332 GGGCATGAGTACCCGTCG 59.894 66.667 0.00 0.00 36.07 5.12
2946 6529 1.451387 CCAACGGGCATGAGTACCC 60.451 63.158 0.00 0.00 43.25 3.69
2947 6530 1.451387 CCCAACGGGCATGAGTACC 60.451 63.158 0.00 0.00 35.35 3.34
2948 6531 4.218722 CCCAACGGGCATGAGTAC 57.781 61.111 0.00 0.00 35.35 2.73
2973 6556 6.764085 TGTATATTGTTTGATCTACCCGTTGG 59.236 38.462 0.00 0.00 37.80 3.77
2974 6557 7.780008 TGTATATTGTTTGATCTACCCGTTG 57.220 36.000 0.00 0.00 0.00 4.10
2975 6558 8.044908 ACTTGTATATTGTTTGATCTACCCGTT 58.955 33.333 0.00 0.00 0.00 4.44
2976 6559 7.562135 ACTTGTATATTGTTTGATCTACCCGT 58.438 34.615 0.00 0.00 0.00 5.28
2977 6560 8.433421 AACTTGTATATTGTTTGATCTACCCG 57.567 34.615 0.00 0.00 0.00 5.28
3012 6595 9.929722 GTCAAATGTGCTATCGATAAATGTAAA 57.070 29.630 6.58 0.00 0.00 2.01
3013 6596 9.103861 TGTCAAATGTGCTATCGATAAATGTAA 57.896 29.630 6.58 0.00 0.00 2.41
3014 6597 8.655651 TGTCAAATGTGCTATCGATAAATGTA 57.344 30.769 6.58 0.00 0.00 2.29
3015 6598 7.552458 TGTCAAATGTGCTATCGATAAATGT 57.448 32.000 6.58 0.00 0.00 2.71
3016 6599 8.839947 TTTGTCAAATGTGCTATCGATAAATG 57.160 30.769 6.58 0.00 0.00 2.32
3017 6600 9.853555 TTTTTGTCAAATGTGCTATCGATAAAT 57.146 25.926 6.58 0.00 0.00 1.40
3062 6645 9.973450 GTAATTGTCATGTACTCATCTATCTGT 57.027 33.333 0.00 0.00 31.15 3.41
3063 6646 9.416794 GGTAATTGTCATGTACTCATCTATCTG 57.583 37.037 0.00 0.00 31.15 2.90
3064 6647 9.373450 AGGTAATTGTCATGTACTCATCTATCT 57.627 33.333 0.00 0.00 31.15 1.98
3065 6648 9.632807 GAGGTAATTGTCATGTACTCATCTATC 57.367 37.037 0.00 0.00 31.15 2.08
3066 6649 9.147732 TGAGGTAATTGTCATGTACTCATCTAT 57.852 33.333 0.00 0.00 31.15 1.98
3067 6650 8.533569 TGAGGTAATTGTCATGTACTCATCTA 57.466 34.615 0.00 0.00 31.15 1.98
3068 6651 7.423844 TGAGGTAATTGTCATGTACTCATCT 57.576 36.000 0.00 0.00 31.15 2.90
3069 6652 8.668510 ATTGAGGTAATTGTCATGTACTCATC 57.331 34.615 0.00 0.00 31.15 2.92
3070 6653 9.466497 AAATTGAGGTAATTGTCATGTACTCAT 57.534 29.630 0.00 0.00 38.93 2.90
3071 6654 8.862325 AAATTGAGGTAATTGTCATGTACTCA 57.138 30.769 0.00 0.00 38.93 3.41
3097 6680 9.612066 ATGTTAAAGTTCACCAATTGTCAATTT 57.388 25.926 8.12 0.00 0.00 1.82
3099 6682 9.912634 CTATGTTAAAGTTCACCAATTGTCAAT 57.087 29.630 4.43 0.00 0.00 2.57
3100 6683 7.865385 GCTATGTTAAAGTTCACCAATTGTCAA 59.135 33.333 4.43 0.00 0.00 3.18
3101 6684 7.230510 AGCTATGTTAAAGTTCACCAATTGTCA 59.769 33.333 4.43 0.00 0.00 3.58
3102 6685 7.593825 AGCTATGTTAAAGTTCACCAATTGTC 58.406 34.615 4.43 0.00 0.00 3.18
3103 6686 7.524717 AGCTATGTTAAAGTTCACCAATTGT 57.475 32.000 4.43 0.00 0.00 2.71
3104 6687 8.081633 TGAAGCTATGTTAAAGTTCACCAATTG 58.918 33.333 0.00 0.00 0.00 2.32
3105 6688 8.082242 GTGAAGCTATGTTAAAGTTCACCAATT 58.918 33.333 0.00 0.00 38.44 2.32
3106 6689 7.230510 TGTGAAGCTATGTTAAAGTTCACCAAT 59.769 33.333 9.79 0.00 41.93 3.16
3107 6690 6.544197 TGTGAAGCTATGTTAAAGTTCACCAA 59.456 34.615 9.79 0.00 41.93 3.67
3108 6691 6.058833 TGTGAAGCTATGTTAAAGTTCACCA 58.941 36.000 9.79 0.00 41.93 4.17
3109 6692 6.554334 TGTGAAGCTATGTTAAAGTTCACC 57.446 37.500 9.79 0.00 41.93 4.02
3110 6693 8.129211 AGTTTGTGAAGCTATGTTAAAGTTCAC 58.871 33.333 6.15 6.15 42.60 3.18
3111 6694 8.220755 AGTTTGTGAAGCTATGTTAAAGTTCA 57.779 30.769 0.00 0.00 0.00 3.18
3112 6695 8.342634 TGAGTTTGTGAAGCTATGTTAAAGTTC 58.657 33.333 0.00 0.00 0.00 3.01
3113 6696 8.129211 GTGAGTTTGTGAAGCTATGTTAAAGTT 58.871 33.333 0.00 0.00 0.00 2.66
3114 6697 7.518370 CGTGAGTTTGTGAAGCTATGTTAAAGT 60.518 37.037 0.00 0.00 0.00 2.66
3115 6698 6.792250 CGTGAGTTTGTGAAGCTATGTTAAAG 59.208 38.462 0.00 0.00 0.00 1.85
3116 6699 6.480651 TCGTGAGTTTGTGAAGCTATGTTAAA 59.519 34.615 0.00 0.00 0.00 1.52
3117 6700 5.986741 TCGTGAGTTTGTGAAGCTATGTTAA 59.013 36.000 0.00 0.00 0.00 2.01
3118 6701 5.404366 GTCGTGAGTTTGTGAAGCTATGTTA 59.596 40.000 0.00 0.00 0.00 2.41
3119 6702 4.211374 GTCGTGAGTTTGTGAAGCTATGTT 59.789 41.667 0.00 0.00 0.00 2.71
3120 6703 3.741344 GTCGTGAGTTTGTGAAGCTATGT 59.259 43.478 0.00 0.00 0.00 2.29
3121 6704 3.740832 TGTCGTGAGTTTGTGAAGCTATG 59.259 43.478 0.00 0.00 0.00 2.23
3122 6705 3.741344 GTGTCGTGAGTTTGTGAAGCTAT 59.259 43.478 0.00 0.00 0.00 2.97
3123 6706 3.120792 GTGTCGTGAGTTTGTGAAGCTA 58.879 45.455 0.00 0.00 0.00 3.32
3124 6707 1.933853 GTGTCGTGAGTTTGTGAAGCT 59.066 47.619 0.00 0.00 0.00 3.74
3125 6708 1.663643 TGTGTCGTGAGTTTGTGAAGC 59.336 47.619 0.00 0.00 0.00 3.86
3126 6709 2.930040 AGTGTGTCGTGAGTTTGTGAAG 59.070 45.455 0.00 0.00 0.00 3.02
3127 6710 2.967362 AGTGTGTCGTGAGTTTGTGAA 58.033 42.857 0.00 0.00 0.00 3.18
3128 6711 2.665649 AGTGTGTCGTGAGTTTGTGA 57.334 45.000 0.00 0.00 0.00 3.58
3129 6712 2.670905 TGAAGTGTGTCGTGAGTTTGTG 59.329 45.455 0.00 0.00 0.00 3.33
3130 6713 2.671396 GTGAAGTGTGTCGTGAGTTTGT 59.329 45.455 0.00 0.00 0.00 2.83
3131 6714 2.030457 GGTGAAGTGTGTCGTGAGTTTG 59.970 50.000 0.00 0.00 0.00 2.93
3132 6715 2.277084 GGTGAAGTGTGTCGTGAGTTT 58.723 47.619 0.00 0.00 0.00 2.66
3133 6716 1.206132 TGGTGAAGTGTGTCGTGAGTT 59.794 47.619 0.00 0.00 0.00 3.01
3134 6717 0.821517 TGGTGAAGTGTGTCGTGAGT 59.178 50.000 0.00 0.00 0.00 3.41
3135 6718 1.934589 TTGGTGAAGTGTGTCGTGAG 58.065 50.000 0.00 0.00 0.00 3.51
3136 6719 2.388310 TTTGGTGAAGTGTGTCGTGA 57.612 45.000 0.00 0.00 0.00 4.35
3137 6720 4.523813 GTTATTTGGTGAAGTGTGTCGTG 58.476 43.478 0.00 0.00 0.00 4.35
3138 6721 4.806342 GTTATTTGGTGAAGTGTGTCGT 57.194 40.909 0.00 0.00 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.