Multiple sequence alignment - TraesCS2B01G314000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G314000 chr2B 100.000 6196 0 0 1 6196 449163708 449169903 0.000000e+00 11442.0
1 TraesCS2B01G314000 chr2B 90.798 163 10 3 5706 5864 166612697 166612858 4.870000e-51 213.0
2 TraesCS2B01G314000 chr2B 94.118 68 2 2 2025 2091 128340109 128340175 1.100000e-17 102.0
3 TraesCS2B01G314000 chr2D 97.839 3285 66 5 2427 5709 378054672 378057953 0.000000e+00 5668.0
4 TraesCS2B01G314000 chr2D 90.098 2050 134 27 1 1995 378051915 378053950 0.000000e+00 2597.0
5 TraesCS2B01G314000 chr2D 97.048 271 8 0 5926 6196 378059270 378059540 2.040000e-124 457.0
6 TraesCS2B01G314000 chr2D 96.429 196 6 1 2155 2349 378054482 378054677 7.750000e-84 322.0
7 TraesCS2B01G314000 chr2D 94.340 159 7 2 5706 5864 56586751 56586595 6.210000e-60 243.0
8 TraesCS2B01G314000 chr2D 88.636 88 1 1 5856 5934 378057941 378058028 1.420000e-16 99.0
9 TraesCS2B01G314000 chr2D 74.444 180 42 4 580 756 544207547 544207369 2.400000e-09 75.0
10 TraesCS2B01G314000 chr2A 97.362 3260 77 7 2427 5685 512226419 512229670 0.000000e+00 5535.0
11 TraesCS2B01G314000 chr2A 93.237 1035 57 8 968 1995 512224851 512225879 0.000000e+00 1511.0
12 TraesCS2B01G314000 chr2A 97.865 281 6 0 5916 6196 512243000 512243280 2.600000e-133 486.0
13 TraesCS2B01G314000 chr2A 96.183 262 8 2 2088 2349 512226165 512226424 1.600000e-115 427.0
14 TraesCS2B01G314000 chr2A 86.979 192 20 3 968 1157 512203572 512203760 1.750000e-50 211.0
15 TraesCS2B01G314000 chr2A 81.646 158 24 3 5708 5864 60760681 60760528 6.520000e-25 126.0
16 TraesCS2B01G314000 chr2A 92.537 67 2 3 2025 2091 686255214 686255277 6.610000e-15 93.5
17 TraesCS2B01G314000 chr5D 95.625 160 5 2 5706 5864 487948266 487948108 7.970000e-64 255.0
18 TraesCS2B01G314000 chr5A 93.711 159 9 1 5706 5864 582915286 582915129 2.890000e-58 237.0
19 TraesCS2B01G314000 chr5A 92.647 68 2 3 2025 2091 614328866 614328931 1.840000e-15 95.3
20 TraesCS2B01G314000 chr3A 93.038 158 9 2 5707 5864 646858944 646858789 4.830000e-56 230.0
21 TraesCS2B01G314000 chr3A 88.785 107 10 2 2330 2434 208070036 208069930 5.040000e-26 130.0
22 TraesCS2B01G314000 chr4A 92.453 159 10 2 5706 5864 618558540 618558384 6.250000e-55 226.0
23 TraesCS2B01G314000 chr4A 92.754 69 2 3 2025 2093 111063978 111063913 5.110000e-16 97.1
24 TraesCS2B01G314000 chr4A 79.381 97 19 1 665 761 702690123 702690218 4.010000e-07 67.6
25 TraesCS2B01G314000 chr3D 96.552 87 3 0 2344 2430 347592659 347592745 1.800000e-30 145.0
26 TraesCS2B01G314000 chr1A 96.512 86 3 0 2345 2430 418057720 418057805 6.470000e-30 143.0
27 TraesCS2B01G314000 chr7B 96.471 85 3 0 2345 2429 206444835 206444751 2.330000e-29 141.0
28 TraesCS2B01G314000 chr6A 95.455 88 4 0 2344 2431 450088980 450089067 2.330000e-29 141.0
29 TraesCS2B01G314000 chr4B 95.455 88 4 0 2344 2431 86084453 86084366 2.330000e-29 141.0
30 TraesCS2B01G314000 chr4B 91.045 67 5 1 2025 2091 220109403 220109338 8.550000e-14 89.8
31 TraesCS2B01G314000 chr1B 96.471 85 3 0 2346 2430 606365151 606365235 2.330000e-29 141.0
32 TraesCS2B01G314000 chr1B 94.030 67 2 2 2025 2091 676737940 676738004 3.950000e-17 100.0
33 TraesCS2B01G314000 chr6B 96.429 84 3 0 2347 2430 232168951 232169034 8.380000e-29 139.0
34 TraesCS2B01G314000 chr6B 92.537 67 5 0 2025 2091 680510323 680510257 5.110000e-16 97.1
35 TraesCS2B01G314000 chr3B 87.069 116 14 1 2316 2430 708605011 708604896 5.040000e-26 130.0
36 TraesCS2B01G314000 chr5B 81.481 162 24 4 5705 5864 510536016 510536173 1.810000e-25 128.0
37 TraesCS2B01G314000 chr5B 92.647 68 4 1 2025 2092 278243590 278243656 5.110000e-16 97.1
38 TraesCS2B01G314000 chrUn 81.366 161 23 7 5706 5864 302360246 302360401 2.350000e-24 124.0
39 TraesCS2B01G314000 chrUn 92.647 68 3 2 2025 2091 66391521 66391587 5.110000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G314000 chr2B 449163708 449169903 6195 False 11442.0 11442 100.000 1 6196 1 chr2B.!!$F3 6195
1 TraesCS2B01G314000 chr2D 378051915 378059540 7625 False 1828.6 5668 94.010 1 6196 5 chr2D.!!$F1 6195
2 TraesCS2B01G314000 chr2A 512224851 512229670 4819 False 2491.0 5535 95.594 968 5685 3 chr2A.!!$F4 4717

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
909 928 0.172352 TGTGTGCATCGCTCGATACA 59.828 50.0 4.33 2.78 32.93 2.29 F
1211 1263 0.600255 ACGCCACCGTCTTCTTCTTG 60.600 55.0 0.00 0.00 46.39 3.02 F
1757 1815 0.900647 AAGGAGTGGGAGGTCGTCAG 60.901 60.0 0.00 0.00 0.00 3.51 F
2498 3107 0.953727 TGAGCTGTGATGTTTGGTGC 59.046 50.0 0.00 0.00 0.00 5.01 F
3543 4153 0.249868 TCACCACAGCAAGTCTTCCG 60.250 55.0 0.00 0.00 0.00 4.30 F
4181 4791 0.306228 TTTGTGTTGACATCGTGGCG 59.694 50.0 0.00 0.00 30.13 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2015 2348 0.104934 ACTCAGGTCCAACCACCTCT 60.105 55.000 0.00 0.0 44.08 3.69 R
2088 2421 0.322008 GCTGCTGCCACCTCTAGTTT 60.322 55.000 3.85 0.0 0.00 2.66 R
3543 4153 1.195115 TAGCTGTCCCAGTCATCCAC 58.805 55.000 0.00 0.0 33.43 4.02 R
4359 4969 3.259123 CCCAAACCATCTTCCCAAGAAAG 59.741 47.826 0.00 0.0 41.63 2.62 R
5087 5697 1.615392 GTTGCTCCTGTTGCCATTCTT 59.385 47.619 0.00 0.0 0.00 2.52 R
5778 6389 0.034670 CCTCCCCTTTCTCTGCCTTG 60.035 60.000 0.00 0.0 0.00 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.988684 TTGATTGGTGTGGGCGGC 60.989 61.111 0.00 0.00 0.00 6.53
53 54 4.929707 GGCATTAGTCGGGGCGGG 62.930 72.222 0.00 0.00 0.00 6.13
82 83 0.539438 TTTCTTGGATGCTTGGGCGT 60.539 50.000 0.00 0.00 42.25 5.68
123 125 1.116536 TGTGGCGTGAGGTGGTTCTA 61.117 55.000 0.00 0.00 0.00 2.10
124 126 0.249398 GTGGCGTGAGGTGGTTCTAT 59.751 55.000 0.00 0.00 0.00 1.98
134 136 0.912486 GTGGTTCTATGTGCCCCTCT 59.088 55.000 0.00 0.00 0.00 3.69
161 163 4.703299 AGATATGAGGGGCATCATCCTAA 58.297 43.478 7.61 0.00 40.40 2.69
166 168 2.607892 GGGCATCATCCTAACGCGC 61.608 63.158 5.73 0.00 0.00 6.86
199 201 0.181350 GGCTGATCCAAATCTCCGGT 59.819 55.000 0.00 0.00 32.75 5.28
204 206 1.209504 GATCCAAATCTCCGGTGTCCA 59.790 52.381 0.00 0.00 0.00 4.02
210 212 2.021068 ATCTCCGGTGTCCATGCTCG 62.021 60.000 0.00 0.00 0.00 5.03
216 218 1.812922 GTGTCCATGCTCGGAGCTG 60.813 63.158 28.42 22.06 42.97 4.24
221 223 1.376424 CATGCTCGGAGCTGTTGGT 60.376 57.895 28.42 7.07 42.97 3.67
246 248 4.704833 CTGGTGGGTGCCGAGGTG 62.705 72.222 0.00 0.00 0.00 4.00
255 257 4.021925 GCCGAGGTGGGAGCTTGT 62.022 66.667 0.00 0.00 38.63 3.16
275 277 1.299648 CGGTGGAAATCTCTGGCCA 59.700 57.895 4.71 4.71 0.00 5.36
346 348 1.202428 GGTAGCGATGAGGAGGTCAAC 60.202 57.143 0.00 0.00 39.19 3.18
368 370 1.557371 CTCCTGTTCCTTTCTCCCTCC 59.443 57.143 0.00 0.00 0.00 4.30
376 378 4.689549 TTCTCCCTCCGTGCCCGA 62.690 66.667 0.00 0.00 35.63 5.14
383 385 1.301401 CTCCGTGCCCGAGTGAAAA 60.301 57.895 0.00 0.00 35.63 2.29
395 397 3.244457 CCGAGTGAAAACCCTAGTTCCTT 60.244 47.826 0.00 0.00 34.19 3.36
443 446 2.266055 CACCTCCTTGGAGGCGTC 59.734 66.667 29.93 0.00 46.05 5.19
525 528 1.227263 GCGGTGTGGCATCTATCGT 60.227 57.895 0.00 0.00 0.00 3.73
526 529 1.490693 GCGGTGTGGCATCTATCGTG 61.491 60.000 0.00 0.00 0.00 4.35
539 542 4.758251 TCGTGTGGGCGATGGCTG 62.758 66.667 0.00 0.00 39.81 4.85
541 544 3.127533 GTGTGGGCGATGGCTGTC 61.128 66.667 0.00 0.00 39.81 3.51
542 545 3.321648 TGTGGGCGATGGCTGTCT 61.322 61.111 0.00 0.00 39.81 3.41
544 547 3.002583 TGGGCGATGGCTGTCTCA 61.003 61.111 0.00 0.00 39.81 3.27
573 578 2.039624 AGAGTGATGGGGCGGTCT 59.960 61.111 0.00 0.00 0.00 3.85
574 579 2.187946 GAGTGATGGGGCGGTCTG 59.812 66.667 0.00 0.00 0.00 3.51
595 600 2.104132 TCGTGATGGCATCGACGG 59.896 61.111 32.03 21.73 35.79 4.79
596 601 2.202743 CGTGATGGCATCGACGGT 60.203 61.111 28.70 0.00 33.39 4.83
602 607 0.821517 ATGGCATCGACGGTAGTTGA 59.178 50.000 0.00 0.00 44.29 3.18
626 631 2.161855 TGACAAGGTCAATGCATGGAC 58.838 47.619 23.87 23.87 39.78 4.02
637 642 2.787473 TGCATGGACCTCACCTAAAG 57.213 50.000 0.00 0.00 0.00 1.85
645 650 1.346722 ACCTCACCTAAAGTTGGGACG 59.653 52.381 0.00 0.00 32.43 4.79
649 654 2.036733 TCACCTAAAGTTGGGACGACAG 59.963 50.000 0.00 0.00 32.43 3.51
655 660 4.884668 AAAGTTGGGACGACAGAAGATA 57.115 40.909 0.00 0.00 0.00 1.98
657 662 2.166664 AGTTGGGACGACAGAAGATAGC 59.833 50.000 0.00 0.00 0.00 2.97
668 673 2.693591 CAGAAGATAGCGGTGGGTTCTA 59.306 50.000 0.00 0.00 0.00 2.10
682 687 0.371645 GTTCTAGAGCGTGTGCATGC 59.628 55.000 11.82 11.82 46.23 4.06
695 700 3.725459 CATGCGGTGCGTGCTGAA 61.725 61.111 0.00 0.00 38.74 3.02
699 704 2.434884 CGGTGCGTGCTGAAGGAT 60.435 61.111 0.00 0.00 0.00 3.24
700 705 1.153647 CGGTGCGTGCTGAAGGATA 60.154 57.895 0.00 0.00 0.00 2.59
701 706 1.421410 CGGTGCGTGCTGAAGGATAC 61.421 60.000 0.00 0.00 0.00 2.24
702 707 0.391130 GGTGCGTGCTGAAGGATACA 60.391 55.000 0.00 0.00 41.41 2.29
703 708 0.721718 GTGCGTGCTGAAGGATACAC 59.278 55.000 0.00 0.00 41.41 2.90
710 729 2.688446 TGCTGAAGGATACACTAGACCG 59.312 50.000 0.00 0.00 41.41 4.79
727 746 1.103398 CCGGTTGATGATCTTGGCCC 61.103 60.000 0.00 0.00 0.00 5.80
731 750 2.974698 GATGATCTTGGCCCGCCG 60.975 66.667 0.00 0.00 39.42 6.46
746 765 3.294493 CCGTGGGGCAACTTGGTG 61.294 66.667 0.00 0.00 0.00 4.17
752 771 3.808218 GGGCAACTTGGTGAGGCCA 62.808 63.158 5.01 0.00 46.37 5.36
766 785 2.158957 TGAGGCCACCGAATTAGATGTC 60.159 50.000 5.01 0.00 0.00 3.06
786 805 0.247419 GTGCGTTGATGCGTGATCAG 60.247 55.000 0.00 0.00 42.24 2.90
788 807 1.083806 GCGTTGATGCGTGATCAGGA 61.084 55.000 19.26 4.32 42.24 3.86
800 819 4.742417 CGTGATCAGGATATCAAGCTAGG 58.258 47.826 9.87 0.00 37.61 3.02
801 820 4.381398 CGTGATCAGGATATCAAGCTAGGG 60.381 50.000 9.87 0.00 37.61 3.53
802 821 4.774726 GTGATCAGGATATCAAGCTAGGGA 59.225 45.833 4.83 0.00 37.61 4.20
803 822 5.424895 GTGATCAGGATATCAAGCTAGGGAT 59.575 44.000 4.83 0.00 37.61 3.85
821 840 6.458232 AGGGATATAGCAACATAGATCGTC 57.542 41.667 0.00 0.00 0.00 4.20
822 841 5.066634 AGGGATATAGCAACATAGATCGTCG 59.933 44.000 0.00 0.00 0.00 5.12
832 851 0.256752 TAGATCGTCGGGAAGGTGGA 59.743 55.000 0.00 0.00 0.00 4.02
836 855 0.248289 TCGTCGGGAAGGTGGATTTC 59.752 55.000 0.00 0.00 0.00 2.17
840 859 1.138266 TCGGGAAGGTGGATTTCGATC 59.862 52.381 0.00 0.00 0.00 3.69
842 861 2.679639 CGGGAAGGTGGATTTCGATCAA 60.680 50.000 0.00 0.00 0.00 2.57
860 879 8.560355 TCGATCAATCCATGTCTTTTCTTTTA 57.440 30.769 0.00 0.00 0.00 1.52
863 882 9.443283 GATCAATCCATGTCTTTTCTTTTATCG 57.557 33.333 0.00 0.00 0.00 2.92
868 887 6.206634 TCCATGTCTTTTCTTTTATCGCACTT 59.793 34.615 0.00 0.00 0.00 3.16
869 888 6.524586 CCATGTCTTTTCTTTTATCGCACTTC 59.475 38.462 0.00 0.00 0.00 3.01
870 889 6.861065 TGTCTTTTCTTTTATCGCACTTCT 57.139 33.333 0.00 0.00 0.00 2.85
871 890 6.658831 TGTCTTTTCTTTTATCGCACTTCTG 58.341 36.000 0.00 0.00 0.00 3.02
872 891 5.565638 GTCTTTTCTTTTATCGCACTTCTGC 59.434 40.000 0.00 0.00 40.38 4.26
873 892 5.470098 TCTTTTCTTTTATCGCACTTCTGCT 59.530 36.000 0.00 0.00 41.77 4.24
901 920 2.849880 AATATGGTTGTGTGCATCGC 57.150 45.000 0.00 0.00 0.00 4.58
902 921 2.042686 ATATGGTTGTGTGCATCGCT 57.957 45.000 0.00 0.00 0.00 4.93
903 922 1.368641 TATGGTTGTGTGCATCGCTC 58.631 50.000 0.00 0.00 0.00 5.03
904 923 1.638388 ATGGTTGTGTGCATCGCTCG 61.638 55.000 0.00 0.00 0.00 5.03
905 924 2.027073 GGTTGTGTGCATCGCTCGA 61.027 57.895 0.00 0.00 0.00 4.04
906 925 1.361668 GGTTGTGTGCATCGCTCGAT 61.362 55.000 0.00 0.00 34.81 3.59
907 926 1.277326 GTTGTGTGCATCGCTCGATA 58.723 50.000 4.33 0.00 32.93 2.92
908 927 1.005975 GTTGTGTGCATCGCTCGATAC 60.006 52.381 4.33 0.00 32.93 2.24
909 928 0.172352 TGTGTGCATCGCTCGATACA 59.828 50.000 4.33 2.78 32.93 2.29
910 929 0.848942 GTGTGCATCGCTCGATACAG 59.151 55.000 5.52 0.00 29.50 2.74
912 931 1.134175 TGTGCATCGCTCGATACAGAA 59.866 47.619 5.52 0.00 29.50 3.02
913 932 1.783711 GTGCATCGCTCGATACAGAAG 59.216 52.381 5.52 0.00 29.50 2.85
914 933 1.676006 TGCATCGCTCGATACAGAAGA 59.324 47.619 4.33 0.00 32.93 2.87
917 936 2.327200 TCGCTCGATACAGAAGAGGA 57.673 50.000 0.00 0.00 32.96 3.71
918 937 1.941294 TCGCTCGATACAGAAGAGGAC 59.059 52.381 0.00 0.00 32.96 3.85
921 940 3.749088 CGCTCGATACAGAAGAGGACTAT 59.251 47.826 0.00 0.00 32.96 2.12
1043 1093 5.390991 GGAAAGGAAATGTTTCACGAGCTAG 60.391 44.000 7.69 0.00 38.92 3.42
1044 1094 4.273148 AGGAAATGTTTCACGAGCTAGT 57.727 40.909 7.69 0.00 38.92 2.57
1055 1105 2.423892 CACGAGCTAGTACCACACATCT 59.576 50.000 0.00 0.00 0.00 2.90
1211 1263 0.600255 ACGCCACCGTCTTCTTCTTG 60.600 55.000 0.00 0.00 46.39 3.02
1223 1275 2.938798 TTCTTGCCCCGTCCCCAT 60.939 61.111 0.00 0.00 0.00 4.00
1307 1359 0.988832 AACCCAACGCTAGATCCCAA 59.011 50.000 0.00 0.00 0.00 4.12
1404 1456 1.275666 TCGCTTTCATCTCCAAGGGA 58.724 50.000 0.00 0.00 39.07 4.20
1752 1810 1.996187 GGGGAAGGAGTGGGAGGTC 60.996 68.421 0.00 0.00 0.00 3.85
1755 1813 1.605971 GGAAGGAGTGGGAGGTCGTC 61.606 65.000 0.00 0.00 0.00 4.20
1757 1815 0.900647 AAGGAGTGGGAGGTCGTCAG 60.901 60.000 0.00 0.00 0.00 3.51
1908 1966 3.727726 TGAACAGTGAATGATGACGTGT 58.272 40.909 0.00 0.00 0.00 4.49
1909 1967 3.494251 TGAACAGTGAATGATGACGTGTG 59.506 43.478 0.00 0.00 0.00 3.82
1911 1969 2.071540 CAGTGAATGATGACGTGTGCT 58.928 47.619 0.00 0.00 0.00 4.40
1912 1970 2.093310 CAGTGAATGATGACGTGTGCTC 59.907 50.000 0.00 0.00 0.00 4.26
1913 1971 1.394917 GTGAATGATGACGTGTGCTCC 59.605 52.381 0.00 0.00 0.00 4.70
1914 1972 1.276138 TGAATGATGACGTGTGCTCCT 59.724 47.619 0.00 0.00 0.00 3.69
1915 1973 2.495669 TGAATGATGACGTGTGCTCCTA 59.504 45.455 0.00 0.00 0.00 2.94
1916 1974 2.879002 ATGATGACGTGTGCTCCTAG 57.121 50.000 0.00 0.00 0.00 3.02
1966 2024 7.680442 TGGAAATCGAATTTGTTATGACTGA 57.320 32.000 0.00 0.00 31.47 3.41
1981 2039 1.003580 GACTGACAGCTTTGGGATCCA 59.996 52.381 15.23 0.00 0.00 3.41
2021 2354 9.871238 TTATAAGCTCAAGTAAAACTAGAGGTG 57.129 33.333 0.00 0.00 37.16 4.00
2022 2355 5.153950 AGCTCAAGTAAAACTAGAGGTGG 57.846 43.478 0.00 0.00 35.91 4.61
2023 2356 4.593634 AGCTCAAGTAAAACTAGAGGTGGT 59.406 41.667 0.00 0.00 35.91 4.16
2024 2357 5.071923 AGCTCAAGTAAAACTAGAGGTGGTT 59.928 40.000 0.00 0.00 35.91 3.67
2025 2358 5.179555 GCTCAAGTAAAACTAGAGGTGGTTG 59.820 44.000 0.00 0.00 0.00 3.77
2026 2359 5.617252 TCAAGTAAAACTAGAGGTGGTTGG 58.383 41.667 0.00 0.00 0.00 3.77
2027 2360 5.367352 TCAAGTAAAACTAGAGGTGGTTGGA 59.633 40.000 0.00 0.00 0.00 3.53
2028 2361 5.224821 AGTAAAACTAGAGGTGGTTGGAC 57.775 43.478 0.00 0.00 0.00 4.02
2029 2362 3.503800 AAAACTAGAGGTGGTTGGACC 57.496 47.619 0.00 0.00 39.22 4.46
2034 2367 4.750289 AGGTGGTTGGACCTGAGT 57.250 55.556 0.00 0.00 45.20 3.41
2035 2368 2.945718 AGGTGGTTGGACCTGAGTT 58.054 52.632 0.00 0.00 45.20 3.01
2036 2369 1.222567 AGGTGGTTGGACCTGAGTTT 58.777 50.000 0.00 0.00 45.20 2.66
2037 2370 1.133792 AGGTGGTTGGACCTGAGTTTG 60.134 52.381 0.00 0.00 45.20 2.93
2038 2371 1.409661 GGTGGTTGGACCTGAGTTTGT 60.410 52.381 0.00 0.00 39.58 2.83
2039 2372 2.158726 GGTGGTTGGACCTGAGTTTGTA 60.159 50.000 0.00 0.00 39.58 2.41
2040 2373 3.497942 GGTGGTTGGACCTGAGTTTGTAT 60.498 47.826 0.00 0.00 39.58 2.29
2041 2374 4.142038 GTGGTTGGACCTGAGTTTGTATT 58.858 43.478 0.00 0.00 39.58 1.89
2042 2375 4.583073 GTGGTTGGACCTGAGTTTGTATTT 59.417 41.667 0.00 0.00 39.58 1.40
2043 2376 4.825085 TGGTTGGACCTGAGTTTGTATTTC 59.175 41.667 0.00 0.00 39.58 2.17
2044 2377 4.217767 GGTTGGACCTGAGTTTGTATTTCC 59.782 45.833 0.00 0.00 34.73 3.13
2045 2378 3.670625 TGGACCTGAGTTTGTATTTCCG 58.329 45.455 0.00 0.00 0.00 4.30
2046 2379 3.071892 TGGACCTGAGTTTGTATTTCCGT 59.928 43.478 0.00 0.00 0.00 4.69
2047 2380 4.070009 GGACCTGAGTTTGTATTTCCGTT 58.930 43.478 0.00 0.00 0.00 4.44
2048 2381 5.221682 TGGACCTGAGTTTGTATTTCCGTTA 60.222 40.000 0.00 0.00 0.00 3.18
2049 2382 5.878669 GGACCTGAGTTTGTATTTCCGTTAT 59.121 40.000 0.00 0.00 0.00 1.89
2050 2383 6.183360 GGACCTGAGTTTGTATTTCCGTTATG 60.183 42.308 0.00 0.00 0.00 1.90
2051 2384 6.235664 ACCTGAGTTTGTATTTCCGTTATGT 58.764 36.000 0.00 0.00 0.00 2.29
2052 2385 6.370718 ACCTGAGTTTGTATTTCCGTTATGTC 59.629 38.462 0.00 0.00 0.00 3.06
2053 2386 6.397831 TGAGTTTGTATTTCCGTTATGTCG 57.602 37.500 0.00 0.00 0.00 4.35
2054 2387 5.163933 TGAGTTTGTATTTCCGTTATGTCGC 60.164 40.000 0.00 0.00 0.00 5.19
2055 2388 4.691685 AGTTTGTATTTCCGTTATGTCGCA 59.308 37.500 0.00 0.00 0.00 5.10
2056 2389 4.850859 TTGTATTTCCGTTATGTCGCAG 57.149 40.909 0.00 0.00 0.00 5.18
2057 2390 3.852286 TGTATTTCCGTTATGTCGCAGT 58.148 40.909 0.00 0.00 0.00 4.40
2058 2391 4.996344 TGTATTTCCGTTATGTCGCAGTA 58.004 39.130 0.00 0.00 0.00 2.74
2059 2392 5.409211 TGTATTTCCGTTATGTCGCAGTAA 58.591 37.500 0.00 0.00 0.00 2.24
2060 2393 6.044046 TGTATTTCCGTTATGTCGCAGTAAT 58.956 36.000 0.00 0.00 0.00 1.89
2061 2394 4.850859 TTTCCGTTATGTCGCAGTAATG 57.149 40.909 0.00 0.00 0.00 1.90
2062 2395 2.816689 TCCGTTATGTCGCAGTAATGG 58.183 47.619 0.00 0.00 38.00 3.16
2063 2396 2.427812 TCCGTTATGTCGCAGTAATGGA 59.572 45.455 9.15 9.15 41.40 3.41
2064 2397 3.119065 TCCGTTATGTCGCAGTAATGGAA 60.119 43.478 10.23 0.00 40.96 3.53
2065 2398 3.619483 CCGTTATGTCGCAGTAATGGAAA 59.381 43.478 0.00 0.00 38.63 3.13
2066 2399 4.260212 CCGTTATGTCGCAGTAATGGAAAG 60.260 45.833 0.00 0.00 38.63 2.62
2067 2400 4.260212 CGTTATGTCGCAGTAATGGAAAGG 60.260 45.833 0.00 0.00 0.00 3.11
2068 2401 2.107950 TGTCGCAGTAATGGAAAGGG 57.892 50.000 0.00 0.00 0.00 3.95
2069 2402 1.339631 TGTCGCAGTAATGGAAAGGGG 60.340 52.381 0.00 0.00 0.00 4.79
2070 2403 0.988832 TCGCAGTAATGGAAAGGGGT 59.011 50.000 0.00 0.00 0.00 4.95
2071 2404 1.353022 TCGCAGTAATGGAAAGGGGTT 59.647 47.619 0.00 0.00 0.00 4.11
2072 2405 2.572556 TCGCAGTAATGGAAAGGGGTTA 59.427 45.455 0.00 0.00 0.00 2.85
2073 2406 3.201266 TCGCAGTAATGGAAAGGGGTTAT 59.799 43.478 0.00 0.00 0.00 1.89
2074 2407 3.315191 CGCAGTAATGGAAAGGGGTTATG 59.685 47.826 0.00 0.00 0.00 1.90
2075 2408 3.068165 GCAGTAATGGAAAGGGGTTATGC 59.932 47.826 0.00 0.00 0.00 3.14
2076 2409 3.636764 CAGTAATGGAAAGGGGTTATGCC 59.363 47.826 0.00 0.00 0.00 4.40
2316 2925 2.093553 TGATCCGATGACATCTGTGCAA 60.094 45.455 13.45 0.00 0.00 4.08
2355 2964 8.567285 AAAAATGATACAAAGTACTCCCTCTG 57.433 34.615 0.00 0.00 0.00 3.35
2356 2965 6.875972 AATGATACAAAGTACTCCCTCTGT 57.124 37.500 0.00 0.00 0.00 3.41
2357 2966 7.973048 AATGATACAAAGTACTCCCTCTGTA 57.027 36.000 0.00 0.44 0.00 2.74
2358 2967 7.973048 ATGATACAAAGTACTCCCTCTGTAA 57.027 36.000 0.00 0.00 0.00 2.41
2359 2968 7.786046 TGATACAAAGTACTCCCTCTGTAAA 57.214 36.000 0.00 0.00 0.00 2.01
2360 2969 7.609056 TGATACAAAGTACTCCCTCTGTAAAC 58.391 38.462 0.00 0.96 0.00 2.01
2361 2970 7.453752 TGATACAAAGTACTCCCTCTGTAAACT 59.546 37.037 0.00 0.00 0.00 2.66
2362 2971 8.890410 ATACAAAGTACTCCCTCTGTAAACTA 57.110 34.615 0.00 0.00 0.00 2.24
2363 2972 7.607615 ACAAAGTACTCCCTCTGTAAACTAA 57.392 36.000 0.00 0.00 0.00 2.24
2364 2973 8.203681 ACAAAGTACTCCCTCTGTAAACTAAT 57.796 34.615 0.00 0.00 0.00 1.73
2365 2974 8.095169 ACAAAGTACTCCCTCTGTAAACTAATG 58.905 37.037 0.00 0.00 0.00 1.90
2366 2975 7.793948 AAGTACTCCCTCTGTAAACTAATGT 57.206 36.000 0.00 0.00 0.00 2.71
2367 2976 8.890410 AAGTACTCCCTCTGTAAACTAATGTA 57.110 34.615 0.00 0.00 0.00 2.29
2368 2977 8.890410 AGTACTCCCTCTGTAAACTAATGTAA 57.110 34.615 0.00 0.00 0.00 2.41
2369 2978 8.968969 AGTACTCCCTCTGTAAACTAATGTAAG 58.031 37.037 0.00 0.00 0.00 2.34
2370 2979 8.964772 GTACTCCCTCTGTAAACTAATGTAAGA 58.035 37.037 0.00 0.00 0.00 2.10
2371 2980 8.068892 ACTCCCTCTGTAAACTAATGTAAGAG 57.931 38.462 0.00 0.00 0.00 2.85
2372 2981 6.875076 TCCCTCTGTAAACTAATGTAAGAGC 58.125 40.000 0.00 0.00 0.00 4.09
2373 2982 5.749109 CCCTCTGTAAACTAATGTAAGAGCG 59.251 44.000 0.00 0.00 0.00 5.03
2374 2983 6.331061 CCTCTGTAAACTAATGTAAGAGCGT 58.669 40.000 0.00 0.00 0.00 5.07
2375 2984 6.812160 CCTCTGTAAACTAATGTAAGAGCGTT 59.188 38.462 0.00 0.00 0.00 4.84
2376 2985 7.331193 CCTCTGTAAACTAATGTAAGAGCGTTT 59.669 37.037 0.00 0.00 0.00 3.60
2377 2986 8.014322 TCTGTAAACTAATGTAAGAGCGTTTG 57.986 34.615 0.00 0.00 0.00 2.93
2378 2987 7.117236 TCTGTAAACTAATGTAAGAGCGTTTGG 59.883 37.037 0.00 0.00 0.00 3.28
2379 2988 6.930164 TGTAAACTAATGTAAGAGCGTTTGGA 59.070 34.615 0.00 0.00 0.00 3.53
2380 2989 7.604927 TGTAAACTAATGTAAGAGCGTTTGGAT 59.395 33.333 0.00 0.00 0.00 3.41
2381 2990 6.663944 AACTAATGTAAGAGCGTTTGGATC 57.336 37.500 0.00 0.00 0.00 3.36
2382 2991 5.730550 ACTAATGTAAGAGCGTTTGGATCA 58.269 37.500 0.00 0.00 32.03 2.92
2383 2992 4.946784 AATGTAAGAGCGTTTGGATCAC 57.053 40.909 0.00 0.00 32.03 3.06
2384 2993 3.678056 TGTAAGAGCGTTTGGATCACT 57.322 42.857 0.00 0.00 32.03 3.41
2385 2994 4.794278 TGTAAGAGCGTTTGGATCACTA 57.206 40.909 0.00 0.00 32.03 2.74
2386 2995 5.142061 TGTAAGAGCGTTTGGATCACTAA 57.858 39.130 0.00 0.00 32.03 2.24
2387 2996 5.543714 TGTAAGAGCGTTTGGATCACTAAA 58.456 37.500 0.00 0.00 32.03 1.85
2388 2997 5.992829 TGTAAGAGCGTTTGGATCACTAAAA 59.007 36.000 0.00 0.00 32.03 1.52
2389 2998 6.653320 TGTAAGAGCGTTTGGATCACTAAAAT 59.347 34.615 0.00 0.00 32.03 1.82
2390 2999 7.820386 TGTAAGAGCGTTTGGATCACTAAAATA 59.180 33.333 0.00 0.00 32.03 1.40
2391 3000 6.910536 AGAGCGTTTGGATCACTAAAATAG 57.089 37.500 0.00 0.00 32.03 1.73
2392 3001 6.407202 AGAGCGTTTGGATCACTAAAATAGT 58.593 36.000 0.00 0.00 40.28 2.12
2424 3033 8.488651 AACACTTTTATATCAGTTTACGGAGG 57.511 34.615 0.00 0.00 0.00 4.30
2425 3034 7.046033 ACACTTTTATATCAGTTTACGGAGGG 58.954 38.462 0.00 0.00 0.00 4.30
2498 3107 0.953727 TGAGCTGTGATGTTTGGTGC 59.046 50.000 0.00 0.00 0.00 5.01
2512 3121 5.837437 TGTTTGGTGCCAATTAAAGTACTG 58.163 37.500 4.32 0.00 35.70 2.74
2628 3237 5.822519 TGCACTTCTTCTGTACAGTTGAAAT 59.177 36.000 21.99 13.94 0.00 2.17
2676 3285 3.842007 TTTCCCTAACGTGAACTTCCA 57.158 42.857 0.00 0.00 0.00 3.53
2722 3331 9.297037 AGTAACCTATTATGACAAAAGCAAGTT 57.703 29.630 0.00 0.00 0.00 2.66
2808 3417 5.769662 TCAGCACCAAGATCATTACTTGTTT 59.230 36.000 0.00 0.00 41.88 2.83
2924 3533 2.017049 ACATCGCAAGCCAATTCCTAC 58.983 47.619 0.00 0.00 37.18 3.18
2996 3605 9.691362 CTTAAATACAACAAGCTGGTATGTTTT 57.309 29.630 12.39 13.27 37.66 2.43
3062 3671 1.381928 ATGCAATCCTCTGCTTGCCG 61.382 55.000 0.00 0.00 45.58 5.69
3481 4091 4.470602 AGAAGGTTTTTGGAACGATCCTT 58.529 39.130 13.40 0.00 46.70 3.36
3543 4153 0.249868 TCACCACAGCAAGTCTTCCG 60.250 55.000 0.00 0.00 0.00 4.30
3682 4292 3.732048 ACCCGGATAACATCACCTTTT 57.268 42.857 0.73 0.00 0.00 2.27
3790 4400 2.896685 CCTGGCAAGGTAAACATCCAAA 59.103 45.455 0.00 0.00 38.96 3.28
3859 4469 5.799827 TTCCCCAAAGATTTTCATCGTTT 57.200 34.783 0.00 0.00 34.17 3.60
3934 4544 6.709846 GGATACCTCAGAATTCATTTCCTCAG 59.290 42.308 8.44 0.00 34.67 3.35
4008 4618 0.620556 ATGGGAAGCGTTGGACAGAT 59.379 50.000 0.00 0.00 0.00 2.90
4110 4720 9.643693 CAAGCTTTCCTTGTTAAACATATCAAT 57.356 29.630 0.00 0.00 44.74 2.57
4181 4791 0.306228 TTTGTGTTGACATCGTGGCG 59.694 50.000 0.00 0.00 30.13 5.69
4356 4966 3.312736 AACTCTTTTTCCAAGGGAGCA 57.687 42.857 0.00 0.00 31.21 4.26
4359 4969 4.336280 ACTCTTTTTCCAAGGGAGCATAC 58.664 43.478 0.00 0.00 31.21 2.39
4751 5361 4.571984 GCAATGGGGAAATTTGTTATCTGC 59.428 41.667 0.00 0.00 0.00 4.26
4807 5417 6.543465 TCATTTCCCAACTGCTTGATGTATAG 59.457 38.462 0.00 0.00 0.00 1.31
4895 5505 5.120830 CCCTGAGAAAAGATACAGTTTGTCG 59.879 44.000 0.00 0.00 31.47 4.35
4923 5533 2.286654 GCAGCAACCGAGAGATTTATGC 60.287 50.000 0.00 0.00 0.00 3.14
4931 5541 4.645136 ACCGAGAGATTTATGCAGTACTCA 59.355 41.667 0.00 0.00 0.00 3.41
4963 5573 8.292448 TGACAAAGTTCTGAAAGATAGAAATGC 58.708 33.333 0.00 0.00 46.36 3.56
5087 5697 1.475034 GCAACCGGCAATGAGATCCTA 60.475 52.381 0.00 0.00 43.97 2.94
5207 5817 1.133790 GGCTTGTGATGTGAATCTGGC 59.866 52.381 0.00 0.00 0.00 4.85
5320 5930 7.439108 AGACAGTAAATTAGTAGAGCCCATT 57.561 36.000 0.00 0.00 0.00 3.16
5503 6113 6.875948 ATTTGCAGCATCAATATACGGTAA 57.124 33.333 0.00 0.00 0.00 2.85
5544 6154 5.886609 TCTGGGAAATTCCACAAGAATGTA 58.113 37.500 14.68 0.00 44.75 2.29
5603 6213 6.065976 TGGATATCACTGAAGTTCCACAAT 57.934 37.500 4.83 0.00 0.00 2.71
5637 6247 8.084684 AGTTAGACAAATGAGCAAAAGGAATTC 58.915 33.333 0.00 0.00 0.00 2.17
5660 6271 7.903995 TCAAATATTTGGAAATTTGGTGAGC 57.096 32.000 24.40 0.00 41.37 4.26
5685 6296 6.701340 TGTGCTGATAGTTCTTTGTGTAGAT 58.299 36.000 0.00 0.00 0.00 1.98
5705 6316 0.980754 TGGTCTGGCCGTACATCCAT 60.981 55.000 9.30 0.00 41.21 3.41
5706 6317 0.180406 GGTCTGGCCGTACATCCATT 59.820 55.000 9.30 0.00 0.00 3.16
5707 6318 1.408266 GGTCTGGCCGTACATCCATTT 60.408 52.381 9.30 0.00 0.00 2.32
5708 6319 2.365582 GTCTGGCCGTACATCCATTTT 58.634 47.619 0.00 0.00 0.00 1.82
5709 6320 2.752903 GTCTGGCCGTACATCCATTTTT 59.247 45.455 0.00 0.00 0.00 1.94
5725 6336 3.246064 TTTTTGACGGCGCTACGG 58.754 55.556 6.90 0.00 38.39 4.02
5746 6357 3.497031 GCTTACGCCGGCCAGAAC 61.497 66.667 23.46 3.95 0.00 3.01
5747 6358 2.818274 CTTACGCCGGCCAGAACC 60.818 66.667 23.46 0.00 0.00 3.62
5748 6359 3.599285 CTTACGCCGGCCAGAACCA 62.599 63.158 23.46 0.00 0.00 3.67
5749 6360 2.869503 CTTACGCCGGCCAGAACCAT 62.870 60.000 23.46 0.00 0.00 3.55
5750 6361 2.472414 TTACGCCGGCCAGAACCATT 62.472 55.000 23.46 0.00 0.00 3.16
5751 6362 2.472414 TACGCCGGCCAGAACCATTT 62.472 55.000 23.46 0.00 0.00 2.32
5752 6363 2.885113 GCCGGCCAGAACCATTTC 59.115 61.111 18.11 0.00 0.00 2.17
5753 6364 1.976474 GCCGGCCAGAACCATTTCA 60.976 57.895 18.11 0.00 33.72 2.69
5754 6365 1.322538 GCCGGCCAGAACCATTTCAT 61.323 55.000 18.11 0.00 33.72 2.57
5755 6366 1.185315 CCGGCCAGAACCATTTCATT 58.815 50.000 2.24 0.00 33.72 2.57
5756 6367 2.374184 CCGGCCAGAACCATTTCATTA 58.626 47.619 2.24 0.00 33.72 1.90
5757 6368 2.757868 CCGGCCAGAACCATTTCATTAA 59.242 45.455 2.24 0.00 33.72 1.40
5758 6369 3.384467 CCGGCCAGAACCATTTCATTAAT 59.616 43.478 2.24 0.00 33.72 1.40
5759 6370 4.582656 CCGGCCAGAACCATTTCATTAATA 59.417 41.667 2.24 0.00 33.72 0.98
5760 6371 5.278463 CCGGCCAGAACCATTTCATTAATAG 60.278 44.000 2.24 0.00 33.72 1.73
5761 6372 5.530915 CGGCCAGAACCATTTCATTAATAGA 59.469 40.000 2.24 0.00 33.72 1.98
5762 6373 6.207417 CGGCCAGAACCATTTCATTAATAGAT 59.793 38.462 2.24 0.00 33.72 1.98
5763 6374 7.390440 CGGCCAGAACCATTTCATTAATAGATA 59.610 37.037 2.24 0.00 33.72 1.98
5764 6375 9.077885 GGCCAGAACCATTTCATTAATAGATAA 57.922 33.333 0.00 0.00 33.72 1.75
5765 6376 9.899226 GCCAGAACCATTTCATTAATAGATAAC 57.101 33.333 0.00 0.00 33.72 1.89
5772 6383 9.669353 CCATTTCATTAATAGATAACACAGTGC 57.331 33.333 0.00 0.00 0.00 4.40
5782 6393 6.500684 AGATAACACAGTGCATTTACAAGG 57.499 37.500 0.00 0.00 0.00 3.61
5783 6394 3.369546 AACACAGTGCATTTACAAGGC 57.630 42.857 0.00 0.00 38.95 4.35
5791 6402 4.771590 TGCATTTACAAGGCAGAGAAAG 57.228 40.909 0.00 0.00 44.03 2.62
5792 6403 3.507233 TGCATTTACAAGGCAGAGAAAGG 59.493 43.478 0.00 0.00 44.03 3.11
5793 6404 3.119352 GCATTTACAAGGCAGAGAAAGGG 60.119 47.826 0.00 0.00 38.24 3.95
5794 6405 2.879103 TTACAAGGCAGAGAAAGGGG 57.121 50.000 0.00 0.00 0.00 4.79
5795 6406 2.038863 TACAAGGCAGAGAAAGGGGA 57.961 50.000 0.00 0.00 0.00 4.81
5796 6407 0.695347 ACAAGGCAGAGAAAGGGGAG 59.305 55.000 0.00 0.00 0.00 4.30
5797 6408 0.034670 CAAGGCAGAGAAAGGGGAGG 60.035 60.000 0.00 0.00 0.00 4.30
5798 6409 1.210885 AAGGCAGAGAAAGGGGAGGG 61.211 60.000 0.00 0.00 0.00 4.30
5799 6410 2.684499 GGCAGAGAAAGGGGAGGGG 61.684 68.421 0.00 0.00 0.00 4.79
5800 6411 2.684499 GCAGAGAAAGGGGAGGGGG 61.684 68.421 0.00 0.00 0.00 5.40
5817 6428 3.713826 GGGGGTTGAGAGTACAAATCA 57.286 47.619 0.00 0.00 0.00 2.57
5818 6429 4.028993 GGGGGTTGAGAGTACAAATCAA 57.971 45.455 0.00 0.00 0.00 2.57
5819 6430 4.600062 GGGGGTTGAGAGTACAAATCAAT 58.400 43.478 9.67 0.00 35.56 2.57
5820 6431 5.016831 GGGGGTTGAGAGTACAAATCAATT 58.983 41.667 9.67 0.00 35.56 2.32
5821 6432 6.184789 GGGGGTTGAGAGTACAAATCAATTA 58.815 40.000 9.67 0.00 35.56 1.40
5822 6433 6.661805 GGGGGTTGAGAGTACAAATCAATTAA 59.338 38.462 9.67 0.00 35.56 1.40
5823 6434 7.148069 GGGGGTTGAGAGTACAAATCAATTAAG 60.148 40.741 9.67 0.00 35.56 1.85
5824 6435 7.251281 GGGTTGAGAGTACAAATCAATTAAGC 58.749 38.462 9.67 0.00 35.56 3.09
5825 6436 7.121315 GGGTTGAGAGTACAAATCAATTAAGCT 59.879 37.037 9.67 0.00 35.56 3.74
5826 6437 9.162764 GGTTGAGAGTACAAATCAATTAAGCTA 57.837 33.333 9.67 0.00 35.56 3.32
5827 6438 9.974750 GTTGAGAGTACAAATCAATTAAGCTAC 57.025 33.333 9.67 0.00 35.56 3.58
5828 6439 9.719355 TTGAGAGTACAAATCAATTAAGCTACA 57.281 29.630 0.00 0.00 0.00 2.74
5829 6440 9.719355 TGAGAGTACAAATCAATTAAGCTACAA 57.281 29.630 0.00 0.00 0.00 2.41
5846 6457 8.484214 AAGCTACAATCTCATAGATAAGTGGA 57.516 34.615 0.00 0.00 32.89 4.02
5847 6458 8.484214 AGCTACAATCTCATAGATAAGTGGAA 57.516 34.615 8.81 0.00 32.89 3.53
5848 6459 8.364142 AGCTACAATCTCATAGATAAGTGGAAC 58.636 37.037 8.81 0.00 32.89 3.62
5849 6460 8.144478 GCTACAATCTCATAGATAAGTGGAACA 58.856 37.037 8.81 0.00 34.12 3.18
5851 6462 8.723942 ACAATCTCATAGATAAGTGGAACAAC 57.276 34.615 0.00 0.00 34.58 3.32
5852 6463 8.321353 ACAATCTCATAGATAAGTGGAACAACA 58.679 33.333 0.00 0.00 34.58 3.33
5853 6464 9.334947 CAATCTCATAGATAAGTGGAACAACAT 57.665 33.333 0.00 0.00 34.58 2.71
5854 6465 8.899427 ATCTCATAGATAAGTGGAACAACATG 57.101 34.615 0.00 0.00 34.02 3.21
5855 6466 7.275183 TCTCATAGATAAGTGGAACAACATGG 58.725 38.462 0.00 0.00 44.16 3.66
5856 6467 6.957631 TCATAGATAAGTGGAACAACATGGT 58.042 36.000 0.00 0.00 44.16 3.55
5857 6468 8.084985 TCATAGATAAGTGGAACAACATGGTA 57.915 34.615 0.00 0.00 44.16 3.25
5858 6469 7.985184 TCATAGATAAGTGGAACAACATGGTAC 59.015 37.037 0.00 0.00 44.16 3.34
5859 6470 6.121776 AGATAAGTGGAACAACATGGTACA 57.878 37.500 0.00 0.00 44.16 2.90
5860 6471 6.721318 AGATAAGTGGAACAACATGGTACAT 58.279 36.000 0.00 0.00 43.75 2.29
5861 6472 6.823689 AGATAAGTGGAACAACATGGTACATC 59.176 38.462 0.00 0.00 43.75 3.06
5862 6473 3.686016 AGTGGAACAACATGGTACATCC 58.314 45.455 0.00 0.00 43.75 3.51
5863 6474 3.797559 TGGAACAACATGGTACATCCA 57.202 42.857 7.13 7.13 43.99 3.41
5934 6554 8.677148 ACTTCTAAACTGATCTTGCAAAAGTA 57.323 30.769 0.00 0.00 0.00 2.24
5935 6555 8.560374 ACTTCTAAACTGATCTTGCAAAAGTAC 58.440 33.333 0.00 0.00 0.00 2.73
5936 6556 7.435068 TCTAAACTGATCTTGCAAAAGTACC 57.565 36.000 0.00 0.00 0.00 3.34
5984 7854 4.799564 AGCAAACAACACAAAAGAGGAA 57.200 36.364 0.00 0.00 0.00 3.36
5988 7858 6.321181 AGCAAACAACACAAAAGAGGAAGATA 59.679 34.615 0.00 0.00 0.00 1.98
6091 7961 5.631119 AGGGAGTATGTAACAGCTTTTTGT 58.369 37.500 0.00 0.00 0.00 2.83
6130 8000 7.975616 GGAAAGACTGCAATGCTTTATTATCAA 59.024 33.333 6.82 0.00 32.45 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 0.678048 ATCCAAGAAAGTCTGGCCGC 60.678 55.000 0.00 0.00 0.00 6.53
59 60 2.800250 CCCAAGCATCCAAGAAAGTCT 58.200 47.619 0.00 0.00 0.00 3.24
123 125 4.660303 TCATATCTAACAAGAGGGGCACAT 59.340 41.667 0.00 0.00 0.00 3.21
124 126 4.037222 TCATATCTAACAAGAGGGGCACA 58.963 43.478 0.00 0.00 0.00 4.57
134 136 5.280676 GGATGATGCCCCTCATATCTAACAA 60.281 44.000 0.00 0.00 36.01 2.83
190 192 0.179000 GAGCATGGACACCGGAGATT 59.821 55.000 9.46 0.00 0.00 2.40
199 201 1.830587 AACAGCTCCGAGCATGGACA 61.831 55.000 22.29 0.00 45.56 4.02
204 206 1.376424 CACCAACAGCTCCGAGCAT 60.376 57.895 22.29 7.24 45.56 3.79
210 212 2.282462 CCCACCACCAACAGCTCC 60.282 66.667 0.00 0.00 0.00 4.70
216 218 4.218686 ACCAGGCCCACCACCAAC 62.219 66.667 0.00 0.00 39.06 3.77
240 242 2.266055 GGACAAGCTCCCACCTCG 59.734 66.667 0.00 0.00 31.83 4.63
242 244 3.322466 CCGGACAAGCTCCCACCT 61.322 66.667 0.00 0.00 35.21 4.00
246 248 2.406002 TTTCCACCGGACAAGCTCCC 62.406 60.000 9.46 0.00 35.21 4.30
255 257 1.602237 GCCAGAGATTTCCACCGGA 59.398 57.895 9.46 0.00 0.00 5.14
260 262 0.322456 CCGTTGGCCAGAGATTTCCA 60.322 55.000 5.11 0.00 0.00 3.53
263 265 4.002797 GCCGTTGGCCAGAGATTT 57.997 55.556 5.11 0.00 44.06 2.17
312 314 1.202580 CGCTACCAAGGAGGAGAATGG 60.203 57.143 0.00 0.00 41.22 3.16
346 348 0.621082 GGGAGAAAGGAACAGGAGGG 59.379 60.000 0.00 0.00 0.00 4.30
354 356 1.677552 GCACGGAGGGAGAAAGGAA 59.322 57.895 0.00 0.00 0.00 3.36
368 370 2.613506 GGGTTTTCACTCGGGCACG 61.614 63.158 0.00 0.00 42.74 5.34
376 378 4.165372 TCACAAGGAACTAGGGTTTTCACT 59.835 41.667 0.00 0.00 38.49 3.41
443 446 2.036475 CCTCCATCTCATACCCAAGACG 59.964 54.545 0.00 0.00 0.00 4.18
505 508 1.217585 CGATAGATGCCACACCGCAG 61.218 60.000 0.00 0.00 43.26 5.18
510 513 1.290203 CCACACGATAGATGCCACAC 58.710 55.000 0.00 0.00 41.38 3.82
525 528 3.315142 GAGACAGCCATCGCCCACA 62.315 63.158 0.00 0.00 34.57 4.17
526 529 2.512515 GAGACAGCCATCGCCCAC 60.513 66.667 0.00 0.00 34.57 4.61
569 574 2.509336 CCATCACGACGCCAGACC 60.509 66.667 0.00 0.00 0.00 3.85
573 578 2.511373 GATGCCATCACGACGCCA 60.511 61.111 0.00 0.00 0.00 5.69
574 579 3.630148 CGATGCCATCACGACGCC 61.630 66.667 5.40 0.00 0.00 5.68
579 584 0.934901 CTACCGTCGATGCCATCACG 60.935 60.000 17.19 17.19 35.27 4.35
583 588 0.821517 TCAACTACCGTCGATGCCAT 59.178 50.000 0.00 0.00 0.00 4.40
595 600 4.585955 TGACCTTGTCAGTCTCAACTAC 57.414 45.455 0.00 0.00 37.67 2.73
596 601 5.541845 CATTGACCTTGTCAGTCTCAACTA 58.458 41.667 0.00 0.00 43.69 2.24
602 607 2.936919 TGCATTGACCTTGTCAGTCT 57.063 45.000 0.00 0.00 43.69 3.24
626 631 1.621814 TCGTCCCAACTTTAGGTGAGG 59.378 52.381 0.00 0.00 0.00 3.86
637 642 2.541556 GCTATCTTCTGTCGTCCCAAC 58.458 52.381 0.00 0.00 0.00 3.77
645 650 0.824759 ACCCACCGCTATCTTCTGTC 59.175 55.000 0.00 0.00 0.00 3.51
649 654 2.957006 TCTAGAACCCACCGCTATCTTC 59.043 50.000 0.00 0.00 0.00 2.87
655 660 2.711922 CGCTCTAGAACCCACCGCT 61.712 63.158 0.00 0.00 0.00 5.52
657 662 1.153823 CACGCTCTAGAACCCACCG 60.154 63.158 0.00 0.00 0.00 4.94
668 673 4.687215 ACCGCATGCACACGCTCT 62.687 61.111 19.57 0.00 39.64 4.09
682 687 1.153647 TATCCTTCAGCACGCACCG 60.154 57.895 0.00 0.00 0.00 4.94
691 696 3.288964 ACCGGTCTAGTGTATCCTTCAG 58.711 50.000 0.00 0.00 0.00 3.02
692 697 3.377253 ACCGGTCTAGTGTATCCTTCA 57.623 47.619 0.00 0.00 0.00 3.02
693 698 3.698040 TCAACCGGTCTAGTGTATCCTTC 59.302 47.826 8.04 0.00 0.00 3.46
695 700 3.377253 TCAACCGGTCTAGTGTATCCT 57.623 47.619 8.04 0.00 0.00 3.24
697 702 4.913335 TCATCAACCGGTCTAGTGTATC 57.087 45.455 8.04 0.00 0.00 2.24
698 703 5.141182 AGATCATCAACCGGTCTAGTGTAT 58.859 41.667 8.04 0.00 0.00 2.29
699 704 4.533815 AGATCATCAACCGGTCTAGTGTA 58.466 43.478 8.04 0.00 0.00 2.90
700 705 3.366396 AGATCATCAACCGGTCTAGTGT 58.634 45.455 8.04 0.00 0.00 3.55
701 706 4.115516 CAAGATCATCAACCGGTCTAGTG 58.884 47.826 8.04 1.60 0.00 2.74
702 707 3.133003 CCAAGATCATCAACCGGTCTAGT 59.867 47.826 8.04 0.00 0.00 2.57
703 708 3.722147 CCAAGATCATCAACCGGTCTAG 58.278 50.000 8.04 0.50 0.00 2.43
710 729 1.728490 GCGGGCCAAGATCATCAACC 61.728 60.000 4.39 0.00 0.00 3.77
731 750 1.903404 CCTCACCAAGTTGCCCCAC 60.903 63.158 0.00 0.00 0.00 4.61
746 765 2.484889 GACATCTAATTCGGTGGCCTC 58.515 52.381 3.32 0.00 0.00 4.70
752 771 1.135199 ACGCACGACATCTAATTCGGT 60.135 47.619 0.00 0.00 39.63 4.69
766 785 1.296145 GATCACGCATCAACGCACG 60.296 57.895 0.00 0.00 36.19 5.34
786 805 6.985653 TGCTATATCCCTAGCTTGATATCC 57.014 41.667 13.33 8.85 43.68 2.59
788 807 7.739995 TGTTGCTATATCCCTAGCTTGATAT 57.260 36.000 14.03 14.03 43.68 1.63
799 818 5.274718 CGACGATCTATGTTGCTATATCCC 58.725 45.833 0.00 0.00 0.00 3.85
800 819 5.274718 CCGACGATCTATGTTGCTATATCC 58.725 45.833 0.00 0.00 0.00 2.59
801 820 5.066117 TCCCGACGATCTATGTTGCTATATC 59.934 44.000 0.00 0.00 0.00 1.63
802 821 4.948004 TCCCGACGATCTATGTTGCTATAT 59.052 41.667 0.00 0.00 0.00 0.86
803 822 4.329392 TCCCGACGATCTATGTTGCTATA 58.671 43.478 0.00 0.00 0.00 1.31
821 840 1.134521 TGATCGAAATCCACCTTCCCG 60.135 52.381 0.00 0.00 0.00 5.14
822 841 2.710096 TGATCGAAATCCACCTTCCC 57.290 50.000 0.00 0.00 0.00 3.97
832 851 7.636150 AGAAAAGACATGGATTGATCGAAAT 57.364 32.000 0.00 0.00 0.00 2.17
836 855 9.443283 GATAAAAGAAAAGACATGGATTGATCG 57.557 33.333 0.00 0.00 0.00 3.69
840 859 7.008628 GTGCGATAAAAGAAAAGACATGGATTG 59.991 37.037 0.00 0.00 0.00 2.67
842 861 6.375455 AGTGCGATAAAAGAAAAGACATGGAT 59.625 34.615 0.00 0.00 0.00 3.41
868 887 9.407380 ACACAACCATATTTATTATTCAGCAGA 57.593 29.630 0.00 0.00 0.00 4.26
869 888 9.454585 CACACAACCATATTTATTATTCAGCAG 57.545 33.333 0.00 0.00 0.00 4.24
870 889 7.920151 GCACACAACCATATTTATTATTCAGCA 59.080 33.333 0.00 0.00 0.00 4.41
871 890 7.920151 TGCACACAACCATATTTATTATTCAGC 59.080 33.333 0.00 0.00 0.00 4.26
872 891 9.970395 ATGCACACAACCATATTTATTATTCAG 57.030 29.630 0.00 0.00 0.00 3.02
873 892 9.964303 GATGCACACAACCATATTTATTATTCA 57.036 29.630 0.00 0.00 0.00 2.57
890 909 0.172352 TGTATCGAGCGATGCACACA 59.828 50.000 17.44 10.07 41.12 3.72
901 920 5.556915 AGGATAGTCCTCTTCTGTATCGAG 58.443 45.833 0.00 0.00 45.66 4.04
902 921 5.570205 AGGATAGTCCTCTTCTGTATCGA 57.430 43.478 0.00 0.00 45.66 3.59
1043 1093 5.084519 TGGGGATATCTAGATGTGTGGTAC 58.915 45.833 15.79 0.00 0.00 3.34
1044 1094 5.333581 CTGGGGATATCTAGATGTGTGGTA 58.666 45.833 15.79 0.00 0.00 3.25
1055 1105 0.178873 GGTGGGCCTGGGGATATCTA 60.179 60.000 4.53 0.00 0.00 1.98
1149 1200 0.109913 GGGAGAGGTTTTGGTTCGGT 59.890 55.000 0.00 0.00 0.00 4.69
1223 1275 1.048724 GGAGATGATGGTGGGTCGGA 61.049 60.000 0.00 0.00 0.00 4.55
1226 1278 1.447643 CGGGAGATGATGGTGGGTC 59.552 63.158 0.00 0.00 0.00 4.46
1307 1359 1.338136 CCGTGAGTAGGCTGGGGAAT 61.338 60.000 0.00 0.00 0.00 3.01
1752 1810 1.599667 CCGTTCCGTATCATCCTGACG 60.600 57.143 0.00 0.00 36.36 4.35
1755 1813 0.600255 GCCCGTTCCGTATCATCCTG 60.600 60.000 0.00 0.00 0.00 3.86
1757 1815 0.319641 GAGCCCGTTCCGTATCATCC 60.320 60.000 0.00 0.00 0.00 3.51
1908 1966 8.377034 TGGTTTAATAAACAAGTACTAGGAGCA 58.623 33.333 16.55 0.00 43.15 4.26
1909 1967 8.782339 TGGTTTAATAAACAAGTACTAGGAGC 57.218 34.615 16.55 0.00 43.15 4.70
1966 2024 1.565759 TGCTATGGATCCCAAAGCTGT 59.434 47.619 23.09 0.00 36.95 4.40
1995 2053 9.871238 CACCTCTAGTTTTACTTGAGCTTATAA 57.129 33.333 11.23 0.00 43.52 0.98
2014 2347 1.149288 ACTCAGGTCCAACCACCTCTA 59.851 52.381 0.00 0.00 44.08 2.43
2015 2348 0.104934 ACTCAGGTCCAACCACCTCT 60.105 55.000 0.00 0.00 44.08 3.69
2016 2349 0.765510 AACTCAGGTCCAACCACCTC 59.234 55.000 0.00 0.00 44.08 3.85
2018 2351 1.318576 CAAACTCAGGTCCAACCACC 58.681 55.000 0.00 0.00 41.95 4.61
2019 2352 2.052782 ACAAACTCAGGTCCAACCAC 57.947 50.000 0.00 0.00 41.95 4.16
2020 2353 4.447138 AATACAAACTCAGGTCCAACCA 57.553 40.909 0.00 0.00 41.95 3.67
2021 2354 4.217767 GGAAATACAAACTCAGGTCCAACC 59.782 45.833 0.00 0.00 38.99 3.77
2022 2355 4.083484 CGGAAATACAAACTCAGGTCCAAC 60.083 45.833 0.00 0.00 0.00 3.77
2023 2356 4.069304 CGGAAATACAAACTCAGGTCCAA 58.931 43.478 0.00 0.00 0.00 3.53
2024 2357 3.071892 ACGGAAATACAAACTCAGGTCCA 59.928 43.478 0.00 0.00 0.00 4.02
2025 2358 3.671716 ACGGAAATACAAACTCAGGTCC 58.328 45.455 0.00 0.00 0.00 4.46
2026 2359 6.370718 ACATAACGGAAATACAAACTCAGGTC 59.629 38.462 0.00 0.00 0.00 3.85
2027 2360 6.235664 ACATAACGGAAATACAAACTCAGGT 58.764 36.000 0.00 0.00 0.00 4.00
2028 2361 6.455113 CGACATAACGGAAATACAAACTCAGG 60.455 42.308 0.00 0.00 0.00 3.86
2029 2362 6.466812 CGACATAACGGAAATACAAACTCAG 58.533 40.000 0.00 0.00 0.00 3.35
2030 2363 5.163933 GCGACATAACGGAAATACAAACTCA 60.164 40.000 0.00 0.00 0.00 3.41
2031 2364 5.163933 TGCGACATAACGGAAATACAAACTC 60.164 40.000 0.00 0.00 0.00 3.01
2032 2365 4.691685 TGCGACATAACGGAAATACAAACT 59.308 37.500 0.00 0.00 0.00 2.66
2033 2366 4.960329 TGCGACATAACGGAAATACAAAC 58.040 39.130 0.00 0.00 0.00 2.93
2034 2367 4.691685 ACTGCGACATAACGGAAATACAAA 59.308 37.500 0.00 0.00 32.77 2.83
2035 2368 4.247258 ACTGCGACATAACGGAAATACAA 58.753 39.130 0.00 0.00 32.77 2.41
2036 2369 3.852286 ACTGCGACATAACGGAAATACA 58.148 40.909 0.00 0.00 32.77 2.29
2037 2370 5.954434 TTACTGCGACATAACGGAAATAC 57.046 39.130 0.00 0.00 32.77 1.89
2038 2371 5.464057 CCATTACTGCGACATAACGGAAATA 59.536 40.000 0.00 0.00 32.77 1.40
2039 2372 4.272504 CCATTACTGCGACATAACGGAAAT 59.727 41.667 0.00 0.00 32.77 2.17
2040 2373 3.619483 CCATTACTGCGACATAACGGAAA 59.381 43.478 0.00 0.00 32.77 3.13
2041 2374 3.119065 TCCATTACTGCGACATAACGGAA 60.119 43.478 0.00 0.00 32.77 4.30
2042 2375 2.427812 TCCATTACTGCGACATAACGGA 59.572 45.455 0.00 0.00 0.00 4.69
2043 2376 2.816689 TCCATTACTGCGACATAACGG 58.183 47.619 0.00 0.00 0.00 4.44
2044 2377 4.260212 CCTTTCCATTACTGCGACATAACG 60.260 45.833 0.00 0.00 0.00 3.18
2045 2378 4.035208 CCCTTTCCATTACTGCGACATAAC 59.965 45.833 0.00 0.00 0.00 1.89
2046 2379 4.196193 CCCTTTCCATTACTGCGACATAA 58.804 43.478 0.00 0.00 0.00 1.90
2047 2380 3.433031 CCCCTTTCCATTACTGCGACATA 60.433 47.826 0.00 0.00 0.00 2.29
2048 2381 2.643551 CCCTTTCCATTACTGCGACAT 58.356 47.619 0.00 0.00 0.00 3.06
2049 2382 1.339631 CCCCTTTCCATTACTGCGACA 60.340 52.381 0.00 0.00 0.00 4.35
2050 2383 1.339727 ACCCCTTTCCATTACTGCGAC 60.340 52.381 0.00 0.00 0.00 5.19
2051 2384 0.988832 ACCCCTTTCCATTACTGCGA 59.011 50.000 0.00 0.00 0.00 5.10
2052 2385 1.834188 AACCCCTTTCCATTACTGCG 58.166 50.000 0.00 0.00 0.00 5.18
2053 2386 3.068165 GCATAACCCCTTTCCATTACTGC 59.932 47.826 0.00 0.00 0.00 4.40
2054 2387 3.636764 GGCATAACCCCTTTCCATTACTG 59.363 47.826 0.00 0.00 0.00 2.74
2055 2388 3.910989 GGCATAACCCCTTTCCATTACT 58.089 45.455 0.00 0.00 0.00 2.24
2086 2419 2.508526 CTGCTGCCACCTCTAGTTTTT 58.491 47.619 0.00 0.00 0.00 1.94
2087 2420 1.884067 GCTGCTGCCACCTCTAGTTTT 60.884 52.381 3.85 0.00 0.00 2.43
2088 2421 0.322008 GCTGCTGCCACCTCTAGTTT 60.322 55.000 3.85 0.00 0.00 2.66
2089 2422 1.298014 GCTGCTGCCACCTCTAGTT 59.702 57.895 3.85 0.00 0.00 2.24
2090 2423 2.985456 GCTGCTGCCACCTCTAGT 59.015 61.111 3.85 0.00 0.00 2.57
2186 2795 7.710044 ACAGTGCATTTATTTCACAACAATGAA 59.290 29.630 0.00 0.00 36.80 2.57
2335 2944 7.453752 AGTTTACAGAGGGAGTACTTTGTATCA 59.546 37.037 0.00 0.00 37.73 2.15
2343 2952 8.890410 TTACATTAGTTTACAGAGGGAGTACT 57.110 34.615 0.00 0.00 0.00 2.73
2344 2953 8.964772 TCTTACATTAGTTTACAGAGGGAGTAC 58.035 37.037 0.00 0.00 0.00 2.73
2345 2954 9.186837 CTCTTACATTAGTTTACAGAGGGAGTA 57.813 37.037 0.00 0.00 0.00 2.59
2346 2955 7.363968 GCTCTTACATTAGTTTACAGAGGGAGT 60.364 40.741 0.00 0.00 0.00 3.85
2347 2956 6.981559 GCTCTTACATTAGTTTACAGAGGGAG 59.018 42.308 0.00 0.00 0.00 4.30
2348 2957 6.405508 CGCTCTTACATTAGTTTACAGAGGGA 60.406 42.308 4.76 0.00 36.40 4.20
2349 2958 5.749109 CGCTCTTACATTAGTTTACAGAGGG 59.251 44.000 0.00 0.00 0.00 4.30
2350 2959 6.331061 ACGCTCTTACATTAGTTTACAGAGG 58.669 40.000 0.00 0.00 0.00 3.69
2351 2960 7.813852 AACGCTCTTACATTAGTTTACAGAG 57.186 36.000 0.00 0.00 0.00 3.35
2352 2961 7.117236 CCAAACGCTCTTACATTAGTTTACAGA 59.883 37.037 0.00 0.00 31.63 3.41
2353 2962 7.117236 TCCAAACGCTCTTACATTAGTTTACAG 59.883 37.037 0.00 0.00 31.63 2.74
2354 2963 6.930164 TCCAAACGCTCTTACATTAGTTTACA 59.070 34.615 0.00 0.00 31.63 2.41
2355 2964 7.355332 TCCAAACGCTCTTACATTAGTTTAC 57.645 36.000 0.00 0.00 31.63 2.01
2356 2965 7.820386 TGATCCAAACGCTCTTACATTAGTTTA 59.180 33.333 0.00 0.00 31.63 2.01
2357 2966 6.653320 TGATCCAAACGCTCTTACATTAGTTT 59.347 34.615 0.00 0.00 32.82 2.66
2358 2967 6.092259 GTGATCCAAACGCTCTTACATTAGTT 59.908 38.462 0.00 0.00 0.00 2.24
2359 2968 5.581085 GTGATCCAAACGCTCTTACATTAGT 59.419 40.000 0.00 0.00 0.00 2.24
2360 2969 5.812642 AGTGATCCAAACGCTCTTACATTAG 59.187 40.000 0.00 0.00 0.00 1.73
2361 2970 5.730550 AGTGATCCAAACGCTCTTACATTA 58.269 37.500 0.00 0.00 0.00 1.90
2362 2971 4.579869 AGTGATCCAAACGCTCTTACATT 58.420 39.130 0.00 0.00 0.00 2.71
2363 2972 4.207891 AGTGATCCAAACGCTCTTACAT 57.792 40.909 0.00 0.00 0.00 2.29
2364 2973 3.678056 AGTGATCCAAACGCTCTTACA 57.322 42.857 0.00 0.00 0.00 2.41
2365 2974 6.476243 TTTTAGTGATCCAAACGCTCTTAC 57.524 37.500 0.00 0.00 0.00 2.34
2366 2975 8.038944 ACTATTTTAGTGATCCAAACGCTCTTA 58.961 33.333 0.00 0.00 37.69 2.10
2367 2976 6.879458 ACTATTTTAGTGATCCAAACGCTCTT 59.121 34.615 0.00 0.00 37.69 2.85
2368 2977 6.407202 ACTATTTTAGTGATCCAAACGCTCT 58.593 36.000 0.00 0.00 37.69 4.09
2369 2978 6.663944 ACTATTTTAGTGATCCAAACGCTC 57.336 37.500 0.00 0.00 37.69 5.03
2398 3007 8.943002 CCTCCGTAAACTGATATAAAAGTGTTT 58.057 33.333 0.00 0.00 0.00 2.83
2399 3008 7.551617 CCCTCCGTAAACTGATATAAAAGTGTT 59.448 37.037 0.00 0.00 0.00 3.32
2400 3009 7.046033 CCCTCCGTAAACTGATATAAAAGTGT 58.954 38.462 0.00 0.00 0.00 3.55
2401 3010 7.270047 TCCCTCCGTAAACTGATATAAAAGTG 58.730 38.462 0.00 0.00 0.00 3.16
2402 3011 7.125356 ACTCCCTCCGTAAACTGATATAAAAGT 59.875 37.037 0.00 0.00 0.00 2.66
2403 3012 7.498443 ACTCCCTCCGTAAACTGATATAAAAG 58.502 38.462 0.00 0.00 0.00 2.27
2404 3013 7.427989 ACTCCCTCCGTAAACTGATATAAAA 57.572 36.000 0.00 0.00 0.00 1.52
2405 3014 7.781693 AGTACTCCCTCCGTAAACTGATATAAA 59.218 37.037 0.00 0.00 0.00 1.40
2406 3015 7.293073 AGTACTCCCTCCGTAAACTGATATAA 58.707 38.462 0.00 0.00 0.00 0.98
2407 3016 6.845908 AGTACTCCCTCCGTAAACTGATATA 58.154 40.000 0.00 0.00 0.00 0.86
2408 3017 5.703310 AGTACTCCCTCCGTAAACTGATAT 58.297 41.667 0.00 0.00 0.00 1.63
2409 3018 5.121380 AGTACTCCCTCCGTAAACTGATA 57.879 43.478 0.00 0.00 0.00 2.15
2410 3019 3.978610 AGTACTCCCTCCGTAAACTGAT 58.021 45.455 0.00 0.00 0.00 2.90
2411 3020 3.446442 AGTACTCCCTCCGTAAACTGA 57.554 47.619 0.00 0.00 0.00 3.41
2412 3021 4.439837 GCTTAGTACTCCCTCCGTAAACTG 60.440 50.000 0.00 0.00 0.00 3.16
2413 3022 3.698539 GCTTAGTACTCCCTCCGTAAACT 59.301 47.826 0.00 0.00 0.00 2.66
2414 3023 3.445096 TGCTTAGTACTCCCTCCGTAAAC 59.555 47.826 0.00 0.00 0.00 2.01
2415 3024 3.700538 TGCTTAGTACTCCCTCCGTAAA 58.299 45.455 0.00 0.00 0.00 2.01
2416 3025 3.370840 TGCTTAGTACTCCCTCCGTAA 57.629 47.619 0.00 0.00 0.00 3.18
2417 3026 3.370840 TTGCTTAGTACTCCCTCCGTA 57.629 47.619 0.00 0.00 0.00 4.02
2418 3027 2.226962 TTGCTTAGTACTCCCTCCGT 57.773 50.000 0.00 0.00 0.00 4.69
2419 3028 2.959707 AGATTGCTTAGTACTCCCTCCG 59.040 50.000 0.00 0.00 0.00 4.63
2420 3029 5.775701 TCATAGATTGCTTAGTACTCCCTCC 59.224 44.000 0.00 0.00 0.00 4.30
2421 3030 6.902771 TCATAGATTGCTTAGTACTCCCTC 57.097 41.667 0.00 0.00 0.00 4.30
2422 3031 6.611642 TGTTCATAGATTGCTTAGTACTCCCT 59.388 38.462 0.00 0.00 0.00 4.20
2423 3032 6.817184 TGTTCATAGATTGCTTAGTACTCCC 58.183 40.000 0.00 0.00 0.00 4.30
2424 3033 8.894768 ATTGTTCATAGATTGCTTAGTACTCC 57.105 34.615 0.00 0.00 0.00 3.85
2512 3121 9.708222 CTGCAATAAAAATGAGTAGTACACATC 57.292 33.333 12.79 0.00 28.11 3.06
2628 3237 6.452494 TTCAAAACGGAATTGTCACCTAAA 57.548 33.333 0.00 0.00 0.00 1.85
2676 3285 2.629017 ACAAGGCAAAGGGAATCCAT 57.371 45.000 0.09 0.00 34.83 3.41
2808 3417 9.388506 CTATCTATTGGCTTCTTCTTTTTCTGA 57.611 33.333 0.00 0.00 0.00 3.27
2924 3533 8.537049 TGAATTTGAAGTAATGGCAATTTCAG 57.463 30.769 0.00 0.00 37.16 3.02
3062 3671 5.886960 AGCAATGACTAATCAGACCAAAC 57.113 39.130 0.00 0.00 38.57 2.93
3406 4016 8.313292 CCTAGCTATTCTTAGATCAAGCTCATT 58.687 37.037 14.04 0.00 40.56 2.57
3481 4091 6.816136 TGTTGTCTGAGATCTTGTACTTTGA 58.184 36.000 0.00 0.00 0.00 2.69
3543 4153 1.195115 TAGCTGTCCCAGTCATCCAC 58.805 55.000 0.00 0.00 33.43 4.02
3682 4292 3.558931 TTCTTGCTCTTCTGGTGAACA 57.441 42.857 0.00 0.00 0.00 3.18
3790 4400 7.824289 CGTAAACCTTGGGATGATATATGTGAT 59.176 37.037 0.00 0.00 0.00 3.06
4008 4618 4.699735 ACGCCAATGACATGATTGAACTTA 59.300 37.500 0.00 0.00 35.65 2.24
4110 4720 4.102524 CAGTATGCCCTAGTCACCCAATTA 59.897 45.833 0.00 0.00 0.00 1.40
4181 4791 6.018180 GCACCATTATTAGTTGTACTGTAGCC 60.018 42.308 0.00 0.00 0.00 3.93
4356 4966 5.716703 CCAAACCATCTTCCCAAGAAAGTAT 59.283 40.000 0.00 0.00 41.63 2.12
4359 4969 3.259123 CCCAAACCATCTTCCCAAGAAAG 59.741 47.826 0.00 0.00 41.63 2.62
4751 5361 3.144657 TCATTTGATGGATGATCGGGG 57.855 47.619 0.00 0.00 33.17 5.73
4807 5417 3.057245 GGCAACAAATTCCTCTGGAGTTC 60.057 47.826 0.00 0.00 30.35 3.01
4895 5505 2.281484 TCGGTTGCTGCTTCCCAC 60.281 61.111 0.00 0.00 0.00 4.61
4923 5533 4.626042 ACTTTGTCAAGCTCTGAGTACTG 58.374 43.478 0.00 1.95 33.60 2.74
4931 5541 5.431765 TCTTTCAGAACTTTGTCAAGCTCT 58.568 37.500 0.00 0.00 36.10 4.09
4963 5573 4.039245 TCTTTACACCTTCTCCACACTGAG 59.961 45.833 0.00 0.00 0.00 3.35
5087 5697 1.615392 GTTGCTCCTGTTGCCATTCTT 59.385 47.619 0.00 0.00 0.00 2.52
5304 5914 9.474313 TTTACAAATGAATGGGCTCTACTAATT 57.526 29.630 0.00 0.00 0.00 1.40
5320 5930 9.859427 CAGAGCCTAATGAAATTTTACAAATGA 57.141 29.630 0.00 0.00 37.87 2.57
5342 5952 3.340814 AACAAGACAGGCCATACAGAG 57.659 47.619 5.01 0.00 0.00 3.35
5442 6052 6.058183 AGCACACCAGATATTTTCCATCTAC 58.942 40.000 0.00 0.00 31.48 2.59
5503 6113 7.451731 TCCCAGATACCATTGAACTTTAGAT 57.548 36.000 0.00 0.00 0.00 1.98
5515 6125 4.879295 TGTGGAATTTCCCAGATACCAT 57.121 40.909 12.90 0.00 36.78 3.55
5518 6128 6.378280 ACATTCTTGTGGAATTTCCCAGATAC 59.622 38.462 12.90 4.64 42.20 2.24
5637 6247 7.388500 ACAGCTCACCAAATTTCCAAATATTTG 59.612 33.333 19.40 19.40 40.01 2.32
5660 6271 6.159293 TCTACACAAAGAACTATCAGCACAG 58.841 40.000 0.00 0.00 0.00 3.66
5685 6296 1.195442 TGGATGTACGGCCAGACCAA 61.195 55.000 2.24 0.00 39.03 3.67
5708 6319 2.957052 GCCGTAGCGCCGTCAAAAA 61.957 57.895 2.29 0.00 0.00 1.94
5709 6320 3.416382 GCCGTAGCGCCGTCAAAA 61.416 61.111 2.29 0.00 0.00 2.44
5730 6341 2.818274 GGTTCTGGCCGGCGTAAG 60.818 66.667 22.54 17.82 43.44 2.34
5731 6342 2.472414 AATGGTTCTGGCCGGCGTAA 62.472 55.000 22.54 11.65 0.00 3.18
5732 6343 2.472414 AAATGGTTCTGGCCGGCGTA 62.472 55.000 22.54 11.42 0.00 4.42
5733 6344 3.860930 AAATGGTTCTGGCCGGCGT 62.861 57.895 22.54 0.00 0.00 5.68
5734 6345 3.051392 GAAATGGTTCTGGCCGGCG 62.051 63.158 22.54 7.85 0.00 6.46
5735 6346 1.322538 ATGAAATGGTTCTGGCCGGC 61.323 55.000 21.18 21.18 34.60 6.13
5736 6347 1.185315 AATGAAATGGTTCTGGCCGG 58.815 50.000 4.71 4.71 34.60 6.13
5737 6348 4.654091 ATTAATGAAATGGTTCTGGCCG 57.346 40.909 0.00 0.00 34.60 6.13
5738 6349 6.959639 TCTATTAATGAAATGGTTCTGGCC 57.040 37.500 0.00 0.00 34.60 5.36
5739 6350 9.899226 GTTATCTATTAATGAAATGGTTCTGGC 57.101 33.333 0.00 0.00 34.60 4.85
5746 6357 9.669353 GCACTGTGTTATCTATTAATGAAATGG 57.331 33.333 9.86 0.00 0.00 3.16
5756 6367 8.677300 CCTTGTAAATGCACTGTGTTATCTATT 58.323 33.333 9.86 0.13 0.00 1.73
5757 6368 7.201732 GCCTTGTAAATGCACTGTGTTATCTAT 60.202 37.037 9.86 0.00 37.41 1.98
5758 6369 6.093495 GCCTTGTAAATGCACTGTGTTATCTA 59.907 38.462 9.86 0.00 37.41 1.98
5759 6370 5.106157 GCCTTGTAAATGCACTGTGTTATCT 60.106 40.000 9.86 0.00 37.41 1.98
5760 6371 5.095490 GCCTTGTAAATGCACTGTGTTATC 58.905 41.667 9.86 0.00 37.41 1.75
5761 6372 4.522405 TGCCTTGTAAATGCACTGTGTTAT 59.478 37.500 9.86 1.97 42.54 1.89
5762 6373 3.885901 TGCCTTGTAAATGCACTGTGTTA 59.114 39.130 9.86 0.00 42.54 2.41
5763 6374 2.692557 TGCCTTGTAAATGCACTGTGTT 59.307 40.909 9.86 0.00 42.54 3.32
5764 6375 2.294233 CTGCCTTGTAAATGCACTGTGT 59.706 45.455 9.86 0.00 42.54 3.72
5765 6376 2.553602 TCTGCCTTGTAAATGCACTGTG 59.446 45.455 2.76 2.76 42.54 3.66
5766 6377 2.816087 CTCTGCCTTGTAAATGCACTGT 59.184 45.455 0.00 0.00 42.54 3.55
5767 6378 3.076621 TCTCTGCCTTGTAAATGCACTG 58.923 45.455 0.00 0.00 42.54 3.66
5768 6379 3.423539 TCTCTGCCTTGTAAATGCACT 57.576 42.857 0.00 0.00 42.54 4.40
5769 6380 4.479619 CTTTCTCTGCCTTGTAAATGCAC 58.520 43.478 0.00 0.00 42.54 4.57
5770 6381 3.507233 CCTTTCTCTGCCTTGTAAATGCA 59.493 43.478 0.00 0.00 45.18 3.96
5771 6382 3.119352 CCCTTTCTCTGCCTTGTAAATGC 60.119 47.826 0.00 0.00 38.00 3.56
5772 6383 3.445096 CCCCTTTCTCTGCCTTGTAAATG 59.555 47.826 0.00 0.00 0.00 2.32
5773 6384 3.333680 TCCCCTTTCTCTGCCTTGTAAAT 59.666 43.478 0.00 0.00 0.00 1.40
5774 6385 2.714250 TCCCCTTTCTCTGCCTTGTAAA 59.286 45.455 0.00 0.00 0.00 2.01
5775 6386 2.305927 CTCCCCTTTCTCTGCCTTGTAA 59.694 50.000 0.00 0.00 0.00 2.41
5776 6387 1.909302 CTCCCCTTTCTCTGCCTTGTA 59.091 52.381 0.00 0.00 0.00 2.41
5777 6388 0.695347 CTCCCCTTTCTCTGCCTTGT 59.305 55.000 0.00 0.00 0.00 3.16
5778 6389 0.034670 CCTCCCCTTTCTCTGCCTTG 60.035 60.000 0.00 0.00 0.00 3.61
5779 6390 1.210885 CCCTCCCCTTTCTCTGCCTT 61.211 60.000 0.00 0.00 0.00 4.35
5780 6391 1.617839 CCCTCCCCTTTCTCTGCCT 60.618 63.158 0.00 0.00 0.00 4.75
5781 6392 2.684499 CCCCTCCCCTTTCTCTGCC 61.684 68.421 0.00 0.00 0.00 4.85
5782 6393 2.684499 CCCCCTCCCCTTTCTCTGC 61.684 68.421 0.00 0.00 0.00 4.26
5783 6394 3.746957 CCCCCTCCCCTTTCTCTG 58.253 66.667 0.00 0.00 0.00 3.35
5797 6408 3.713826 TGATTTGTACTCTCAACCCCC 57.286 47.619 0.00 0.00 0.00 5.40
5798 6409 7.628580 GCTTAATTGATTTGTACTCTCAACCCC 60.629 40.741 7.25 0.00 32.16 4.95
5799 6410 7.121315 AGCTTAATTGATTTGTACTCTCAACCC 59.879 37.037 7.25 0.00 32.16 4.11
5800 6411 8.045176 AGCTTAATTGATTTGTACTCTCAACC 57.955 34.615 7.25 0.00 32.16 3.77
5801 6412 9.974750 GTAGCTTAATTGATTTGTACTCTCAAC 57.025 33.333 0.00 0.00 32.16 3.18
5802 6413 9.719355 TGTAGCTTAATTGATTTGTACTCTCAA 57.281 29.630 0.00 7.47 33.75 3.02
5803 6414 9.719355 TTGTAGCTTAATTGATTTGTACTCTCA 57.281 29.630 0.00 0.00 0.00 3.27
5820 6431 9.588096 TCCACTTATCTATGAGATTGTAGCTTA 57.412 33.333 0.00 0.00 36.20 3.09
5821 6432 8.484214 TCCACTTATCTATGAGATTGTAGCTT 57.516 34.615 0.00 0.00 36.20 3.74
5822 6433 8.364142 GTTCCACTTATCTATGAGATTGTAGCT 58.636 37.037 0.00 0.00 36.20 3.32
5823 6434 8.144478 TGTTCCACTTATCTATGAGATTGTAGC 58.856 37.037 0.00 0.00 36.20 3.58
5825 6436 9.817809 GTTGTTCCACTTATCTATGAGATTGTA 57.182 33.333 0.00 0.00 36.20 2.41
5826 6437 8.321353 TGTTGTTCCACTTATCTATGAGATTGT 58.679 33.333 0.00 0.00 36.20 2.71
5827 6438 8.722480 TGTTGTTCCACTTATCTATGAGATTG 57.278 34.615 0.00 0.00 36.20 2.67
5828 6439 9.334947 CATGTTGTTCCACTTATCTATGAGATT 57.665 33.333 0.00 0.00 36.20 2.40
5829 6440 7.935755 CCATGTTGTTCCACTTATCTATGAGAT 59.064 37.037 0.00 0.00 38.70 2.75
5830 6441 7.092891 ACCATGTTGTTCCACTTATCTATGAGA 60.093 37.037 0.00 0.00 0.00 3.27
5831 6442 7.050377 ACCATGTTGTTCCACTTATCTATGAG 58.950 38.462 0.00 0.00 0.00 2.90
5832 6443 6.957631 ACCATGTTGTTCCACTTATCTATGA 58.042 36.000 0.00 0.00 0.00 2.15
5833 6444 7.768582 TGTACCATGTTGTTCCACTTATCTATG 59.231 37.037 0.00 0.00 0.00 2.23
5834 6445 7.857456 TGTACCATGTTGTTCCACTTATCTAT 58.143 34.615 0.00 0.00 0.00 1.98
5835 6446 7.247456 TGTACCATGTTGTTCCACTTATCTA 57.753 36.000 0.00 0.00 0.00 1.98
5836 6447 6.121776 TGTACCATGTTGTTCCACTTATCT 57.878 37.500 0.00 0.00 0.00 1.98
5837 6448 6.038271 GGATGTACCATGTTGTTCCACTTATC 59.962 42.308 0.00 0.00 38.79 1.75
5838 6449 5.885912 GGATGTACCATGTTGTTCCACTTAT 59.114 40.000 0.00 0.00 38.79 1.73
5839 6450 5.221945 TGGATGTACCATGTTGTTCCACTTA 60.222 40.000 0.00 0.00 44.64 2.24
5840 6451 4.079253 GGATGTACCATGTTGTTCCACTT 58.921 43.478 0.00 0.00 38.79 3.16
5841 6452 3.073798 TGGATGTACCATGTTGTTCCACT 59.926 43.478 0.00 0.00 44.64 4.00
5842 6453 3.417101 TGGATGTACCATGTTGTTCCAC 58.583 45.455 0.00 0.00 44.64 4.02
5843 6454 3.797559 TGGATGTACCATGTTGTTCCA 57.202 42.857 0.00 0.00 44.64 3.53
5844 6455 9.590637 GACAAACTGGATGTACCATGTTGTTCC 62.591 44.444 14.13 0.00 46.30 3.62
5845 6456 6.787125 GACAAACTGGATGTACCATGTTGTTC 60.787 42.308 14.13 7.76 46.30 3.18
5846 6457 5.009610 GACAAACTGGATGTACCATGTTGTT 59.990 40.000 14.13 3.37 46.30 2.83
5854 6465 3.375299 GCTCATGACAAACTGGATGTACC 59.625 47.826 0.00 0.00 39.54 3.34
5855 6466 4.256920 AGCTCATGACAAACTGGATGTAC 58.743 43.478 0.00 0.00 0.00 2.90
5856 6467 4.558226 AGCTCATGACAAACTGGATGTA 57.442 40.909 0.00 0.00 0.00 2.29
5857 6468 3.430042 AGCTCATGACAAACTGGATGT 57.570 42.857 0.00 0.00 0.00 3.06
5858 6469 4.022589 ACAAAGCTCATGACAAACTGGATG 60.023 41.667 6.48 0.00 0.00 3.51
5859 6470 4.022589 CACAAAGCTCATGACAAACTGGAT 60.023 41.667 6.48 0.00 0.00 3.41
5860 6471 3.316029 CACAAAGCTCATGACAAACTGGA 59.684 43.478 6.48 0.00 0.00 3.86
5861 6472 3.635331 CACAAAGCTCATGACAAACTGG 58.365 45.455 6.48 0.00 0.00 4.00
5862 6473 3.047796 GCACAAAGCTCATGACAAACTG 58.952 45.455 6.48 0.00 41.15 3.16
5863 6474 3.360249 GCACAAAGCTCATGACAAACT 57.640 42.857 6.48 0.00 41.15 2.66
5896 6507 6.427853 TCAGTTTAGAAGTTGTGATGTGGATG 59.572 38.462 0.00 0.00 0.00 3.51
5934 6554 8.057623 AGATTGAAAATCATGATTCCACTAGGT 58.942 33.333 20.95 0.28 35.89 3.08
5935 6555 8.461249 AGATTGAAAATCATGATTCCACTAGG 57.539 34.615 20.95 0.00 0.00 3.02
5936 6556 9.117183 TGAGATTGAAAATCATGATTCCACTAG 57.883 33.333 20.95 0.00 0.00 2.57
5988 7858 9.579932 AATGAACAGTTTTCTCCTAAATCTTCT 57.420 29.630 0.00 0.00 0.00 2.85
6008 7878 9.654663 AAACAGAGGTAGTAGATGTTAATGAAC 57.345 33.333 0.00 0.00 33.17 3.18
6091 7961 3.318839 CAGTCTTTCCAACAGAAATGCCA 59.681 43.478 0.00 0.00 43.50 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.