Multiple sequence alignment - TraesCS2B01G313800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G313800 chr2B 100.000 4077 0 0 1 4077 448915574 448919650 0.000000e+00 7529.0
1 TraesCS2B01G313800 chr2B 100.000 580 0 0 4475 5054 448920048 448920627 0.000000e+00 1072.0
2 TraesCS2B01G313800 chr2D 96.863 4048 94 11 52 4077 377311665 377315701 0.000000e+00 6741.0
3 TraesCS2B01G313800 chr2D 91.406 512 22 12 4475 4966 377315749 377316258 0.000000e+00 682.0
4 TraesCS2B01G313800 chr2A 96.311 4066 95 25 52 4077 511529247 511533297 0.000000e+00 6626.0
5 TraesCS2B01G313800 chr2A 90.039 512 29 11 4475 4966 511533344 511533853 1.190000e-180 643.0
6 TraesCS2B01G313800 chr2A 95.522 67 3 0 1 67 511529163 511529229 1.920000e-19 108.0
7 TraesCS2B01G313800 chr2A 95.238 63 3 0 4990 5052 511533849 511533911 3.220000e-17 100.0
8 TraesCS2B01G313800 chr4B 89.720 107 11 0 1407 1513 648061788 648061894 2.450000e-28 137.0
9 TraesCS2B01G313800 chr4B 88.073 109 13 0 1405 1513 647763006 647762898 4.110000e-26 130.0
10 TraesCS2B01G313800 chr4B 100.000 35 0 0 4801 4835 618261789 618261755 1.170000e-06 65.8
11 TraesCS2B01G313800 chr4D 87.826 115 14 0 1399 1513 503140659 503140773 8.830000e-28 135.0
12 TraesCS2B01G313800 chr4D 92.453 53 3 1 4733 4784 474723636 474723688 1.950000e-09 75.0
13 TraesCS2B01G313800 chr5A 88.073 109 13 0 1405 1513 687366215 687366107 4.110000e-26 130.0
14 TraesCS2B01G313800 chr5A 84.615 65 10 0 1421 1485 390566116 390566052 1.170000e-06 65.8
15 TraesCS2B01G313800 chr3D 86.139 101 14 0 1399 1499 530415867 530415967 5.350000e-20 110.0
16 TraesCS2B01G313800 chr3D 100.000 34 0 0 4804 4837 517758081 517758048 4.220000e-06 63.9
17 TraesCS2B01G313800 chr3A 87.778 90 11 0 1410 1499 664137502 664137591 6.920000e-19 106.0
18 TraesCS2B01G313800 chr3A 100.000 34 0 0 4804 4837 653339342 653339309 4.220000e-06 63.9
19 TraesCS2B01G313800 chr1B 80.189 106 19 2 4733 4837 529287218 529287322 1.510000e-10 78.7
20 TraesCS2B01G313800 chr5D 78.814 118 9 8 4733 4835 554756900 554757016 1.170000e-06 65.8
21 TraesCS2B01G313800 chr1A 100.000 35 0 0 4801 4835 58304646 58304680 1.170000e-06 65.8
22 TraesCS2B01G313800 chrUn 100.000 34 0 0 4801 4834 78935978 78936011 4.220000e-06 63.9
23 TraesCS2B01G313800 chr4A 88.679 53 5 1 4733 4784 681471368 681471316 4.220000e-06 63.9
24 TraesCS2B01G313800 chr3B 97.368 38 0 1 4801 4837 792363591 792363554 4.220000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G313800 chr2B 448915574 448920627 5053 False 4300.50 7529 100.0000 1 5054 2 chr2B.!!$F1 5053
1 TraesCS2B01G313800 chr2D 377311665 377316258 4593 False 3711.50 6741 94.1345 52 4966 2 chr2D.!!$F1 4914
2 TraesCS2B01G313800 chr2A 511529163 511533911 4748 False 1869.25 6626 94.2775 1 5052 4 chr2A.!!$F1 5051

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
953 1009 0.610174 TAGCTGCATCCATCGGATCC 59.390 55.0 0.00 0.0 40.98 3.36 F
1582 1641 0.252197 AAACCCTAACCCTAGCAGCG 59.748 55.0 0.00 0.0 0.00 5.18 F
2500 2562 0.318955 CTTTTGCGTGCTTTCCTGGG 60.319 55.0 0.00 0.0 0.00 4.45 F
3718 3808 0.322816 GGATGACTTTGAGCAGGCCA 60.323 55.0 5.01 0.0 0.00 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2678 2752 1.078848 GGACTGATTGACTGCGCCT 60.079 57.895 4.18 0.0 0.00 5.52 R
3126 3216 1.815421 CTGGTGGCCATGCTCGTAC 60.815 63.158 9.72 0.0 30.82 3.67 R
4040 4130 1.421268 TGCACAATCACAAGTCCTCCT 59.579 47.619 0.00 0.0 0.00 3.69 R
4946 5057 0.614812 AAAATCCATGTTGCCTGCCC 59.385 50.000 0.00 0.0 0.00 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 7.040201 GCCATAATGATTACCATCACAACTCAT 60.040 37.037 0.00 0.00 42.46 2.90
129 163 0.712222 GTGACGCCAACGCTAACTAC 59.288 55.000 0.00 0.00 45.53 2.73
284 323 3.386486 CAGTGAGCAATGCACATTTGTT 58.614 40.909 8.81 0.00 38.70 2.83
298 337 6.183360 TGCACATTTGTTACTTGTCCAAATCT 60.183 34.615 7.76 0.00 36.84 2.40
306 345 6.262273 TGTTACTTGTCCAAATCTTTCCAGAC 59.738 38.462 0.00 0.00 0.00 3.51
392 432 3.539604 CCTGGTCATTCTTTAGAGGCAG 58.460 50.000 0.00 0.00 0.00 4.85
393 433 2.941720 CTGGTCATTCTTTAGAGGCAGC 59.058 50.000 0.00 0.00 0.00 5.25
412 452 5.039333 GCAGCTGATGACATACAAAATTCC 58.961 41.667 20.43 0.00 0.00 3.01
413 453 5.393352 GCAGCTGATGACATACAAAATTCCA 60.393 40.000 20.43 0.00 0.00 3.53
517 559 1.296715 GGAGGAAAAGCTGAGGCGA 59.703 57.895 0.00 0.00 44.37 5.54
751 794 0.837940 CTTCACCCCTAACCCCTAGC 59.162 60.000 0.00 0.00 0.00 3.42
761 810 3.245346 CCCCTAGCCTGCTAGCCC 61.245 72.222 18.61 0.25 43.35 5.19
851 900 5.392165 GGCACCTCGTCTATATCTACACATC 60.392 48.000 0.00 0.00 0.00 3.06
852 901 5.413213 GCACCTCGTCTATATCTACACATCT 59.587 44.000 0.00 0.00 0.00 2.90
853 902 6.402766 GCACCTCGTCTATATCTACACATCTC 60.403 46.154 0.00 0.00 0.00 2.75
854 903 5.870433 ACCTCGTCTATATCTACACATCTCG 59.130 44.000 0.00 0.00 0.00 4.04
898 951 3.075134 TCCTCTGAGCTAGATATCAGCCA 59.925 47.826 17.94 15.05 42.20 4.75
953 1009 0.610174 TAGCTGCATCCATCGGATCC 59.390 55.000 0.00 0.00 40.98 3.36
981 1037 2.506472 GCTAGGTAGCTGGGTGGC 59.494 66.667 4.27 0.00 45.62 5.01
982 1038 2.066999 GCTAGGTAGCTGGGTGGCT 61.067 63.158 4.27 0.00 45.62 4.75
990 1046 1.207488 AGCTGGGTGGCTATTGGTGA 61.207 55.000 0.00 0.00 41.16 4.02
1224 1280 1.159713 TGGAGCTGTGCTTCAACGTG 61.160 55.000 0.00 0.00 41.71 4.49
1539 1595 4.120755 TGCAGCACCACCACCACA 62.121 61.111 0.00 0.00 0.00 4.17
1582 1641 0.252197 AAACCCTAACCCTAGCAGCG 59.748 55.000 0.00 0.00 0.00 5.18
1629 1688 3.984193 CTCCAAGGCCAAGCTCCCG 62.984 68.421 5.01 0.00 0.00 5.14
2500 2562 0.318955 CTTTTGCGTGCTTTCCTGGG 60.319 55.000 0.00 0.00 0.00 4.45
2705 2779 3.128242 CAGTCAATCAGTCCATGAAAGCC 59.872 47.826 0.00 0.00 42.53 4.35
2861 2935 1.068083 CTCGTCCACCATCCCATCG 59.932 63.158 0.00 0.00 0.00 3.84
3126 3216 0.811616 CGGCTTCCTCCATTTCCTCG 60.812 60.000 0.00 0.00 0.00 4.63
3507 3597 2.856000 AGGGTGGCCAGTGAGCTT 60.856 61.111 5.11 0.00 0.00 3.74
3609 3699 2.047844 GAGCACAGGAGCAAGCGA 60.048 61.111 0.00 0.00 36.85 4.93
3678 3768 2.202453 GACGCCGTCTCCGAGAAC 60.202 66.667 10.56 0.00 35.63 3.01
3708 3798 3.624861 GCGTCATTCTCATGGATGACTTT 59.375 43.478 23.09 0.00 40.71 2.66
3718 3808 0.322816 GGATGACTTTGAGCAGGCCA 60.323 55.000 5.01 0.00 0.00 5.36
3720 3810 1.200948 GATGACTTTGAGCAGGCCAAC 59.799 52.381 5.01 0.00 0.00 3.77
3725 3815 0.823356 TTTGAGCAGGCCAACCAGTC 60.823 55.000 5.01 0.00 39.06 3.51
4029 4119 2.804090 GTCGACCGGACGCTGTTC 60.804 66.667 21.57 0.00 35.61 3.18
4040 4130 2.545952 GGACGCTGTTCTTCAGAAGACA 60.546 50.000 12.75 12.44 46.27 3.41
4512 4603 8.255206 TGTATGATTAGCTCTTCTTTCCGTTTA 58.745 33.333 0.00 0.00 0.00 2.01
4748 4842 0.535335 GGAAGGCATAGTGTCGGTCA 59.465 55.000 0.00 0.00 0.00 4.02
4778 4872 6.593770 TGACTTTATTGTTGCTGATATGTCGT 59.406 34.615 0.00 0.00 0.00 4.34
4779 4873 7.119116 TGACTTTATTGTTGCTGATATGTCGTT 59.881 33.333 0.00 0.00 0.00 3.85
4782 4876 9.128107 CTTTATTGTTGCTGATATGTCGTTTTT 57.872 29.630 0.00 0.00 0.00 1.94
4787 4881 9.469807 TTGTTGCTGATATGTCGTTTTTAAAAT 57.530 25.926 0.55 0.00 0.00 1.82
4788 4882 9.469807 TGTTGCTGATATGTCGTTTTTAAAATT 57.530 25.926 0.55 0.00 0.00 1.82
4789 4883 9.937577 GTTGCTGATATGTCGTTTTTAAAATTC 57.062 29.630 0.55 0.00 0.00 2.17
4797 4891 7.596749 TGTCGTTTTTAAAATTCTTTTGCCA 57.403 28.000 0.55 0.00 34.19 4.92
4798 4892 7.680062 TGTCGTTTTTAAAATTCTTTTGCCAG 58.320 30.769 0.55 0.00 34.19 4.85
4799 4893 7.332182 TGTCGTTTTTAAAATTCTTTTGCCAGT 59.668 29.630 0.55 0.00 34.19 4.00
4807 4918 1.024271 TCTTTTGCCAGTCTGTGTGC 58.976 50.000 0.00 0.00 0.00 4.57
4815 4926 2.613977 GCCAGTCTGTGTGCATCTTAGT 60.614 50.000 0.00 0.00 0.00 2.24
4835 4946 0.035152 TATGCAGAGGCTGGGTGTTG 60.035 55.000 0.00 0.00 41.91 3.33
4844 4955 1.328279 GCTGGGTGTTGCCTTTAGTT 58.672 50.000 0.00 0.00 37.43 2.24
4856 4967 6.262273 TGTTGCCTTTAGTTCTTCTACCTTTG 59.738 38.462 0.00 0.00 0.00 2.77
4860 4971 6.004574 CCTTTAGTTCTTCTACCTTTGCCTT 58.995 40.000 0.00 0.00 0.00 4.35
4866 4977 7.004691 AGTTCTTCTACCTTTGCCTTACAATT 58.995 34.615 0.00 0.00 38.31 2.32
4872 4983 8.506168 TCTACCTTTGCCTTACAATTCTATTG 57.494 34.615 0.00 0.00 38.31 1.90
4875 4986 5.393027 CCTTTGCCTTACAATTCTATTGCGT 60.393 40.000 0.00 0.00 38.31 5.24
4878 4989 3.303132 GCCTTACAATTCTATTGCGTCGG 60.303 47.826 0.00 0.00 0.00 4.79
4916 5027 4.381505 CCTCCAAACTGAGAAGCTAGACTC 60.382 50.000 0.00 8.07 34.11 3.36
4944 5055 6.857451 GGATCATCCAAAAACAACAAAAATGC 59.143 34.615 0.00 0.00 36.28 3.56
4945 5056 5.804173 TCATCCAAAAACAACAAAAATGCG 58.196 33.333 0.00 0.00 0.00 4.73
4946 5057 4.606457 TCCAAAAACAACAAAAATGCGG 57.394 36.364 0.00 0.00 0.00 5.69
4947 5058 3.375299 TCCAAAAACAACAAAAATGCGGG 59.625 39.130 0.00 0.00 0.00 6.13
4948 5059 3.488216 CCAAAAACAACAAAAATGCGGGG 60.488 43.478 0.00 0.00 0.00 5.73
4949 5060 1.304254 AAACAACAAAAATGCGGGGC 58.696 45.000 0.00 0.00 0.00 5.80
4950 5061 0.179000 AACAACAAAAATGCGGGGCA 59.821 45.000 0.00 0.00 44.86 5.36
4951 5062 0.249826 ACAACAAAAATGCGGGGCAG 60.250 50.000 0.00 0.00 43.65 4.85
4952 5063 0.950071 CAACAAAAATGCGGGGCAGG 60.950 55.000 0.00 0.00 43.65 4.85
4953 5064 2.434709 CAAAAATGCGGGGCAGGC 60.435 61.111 0.00 0.00 43.65 4.85
4954 5065 2.921972 AAAAATGCGGGGCAGGCA 60.922 55.556 4.15 4.15 43.65 4.75
4955 5066 2.515071 AAAAATGCGGGGCAGGCAA 61.515 52.632 5.80 0.00 43.65 4.52
4956 5067 2.730066 AAAAATGCGGGGCAGGCAAC 62.730 55.000 5.80 0.00 43.65 4.17
4957 5068 4.992740 AATGCGGGGCAGGCAACA 62.993 61.111 5.80 0.00 43.65 3.33
4958 5069 4.764771 ATGCGGGGCAGGCAACAT 62.765 61.111 5.80 0.00 43.65 2.71
4961 5072 4.738998 CGGGGCAGGCAACATGGA 62.739 66.667 0.00 0.00 41.41 3.41
4962 5073 2.042639 GGGGCAGGCAACATGGAT 60.043 61.111 0.00 0.00 41.41 3.41
4963 5074 1.686800 GGGGCAGGCAACATGGATT 60.687 57.895 0.00 0.00 41.41 3.01
4964 5075 1.266867 GGGGCAGGCAACATGGATTT 61.267 55.000 0.00 0.00 41.41 2.17
4965 5076 0.614812 GGGCAGGCAACATGGATTTT 59.385 50.000 0.00 0.00 41.41 1.82
4966 5077 1.003464 GGGCAGGCAACATGGATTTTT 59.997 47.619 0.00 0.00 41.41 1.94
4988 5099 3.590466 GAGGGGGCAGGCAACATGT 62.590 63.158 0.00 0.00 41.41 3.21
5009 5120 8.113462 ACATGTATTTTGTAGGTAATGGAAGGT 58.887 33.333 0.00 0.00 0.00 3.50
5013 5124 7.645058 ATTTTGTAGGTAATGGAAGGTCATG 57.355 36.000 0.00 0.00 0.00 3.07
5052 5163 8.777413 GCATCTTGCAATGTTAGAAGATATACA 58.223 33.333 0.00 0.00 44.26 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 5.453158 TGTGATGGTAATCATTATGGCCAA 58.547 37.500 10.96 0.00 44.54 4.52
16 17 9.241919 TGTTTATGAGTTGTGATGGTAATCATT 57.758 29.630 0.00 0.00 44.54 2.57
99 133 3.430895 CGTTGGCGTCACAACTAACTTAT 59.569 43.478 14.53 0.00 46.47 1.73
107 141 0.383860 GTTAGCGTTGGCGTCACAAC 60.384 55.000 0.00 0.00 46.35 3.32
129 163 2.486918 TGATGATATCCAGCACGCAAG 58.513 47.619 0.00 0.00 36.07 4.01
208 243 9.353999 AGAGTTTAAACATCAACTTTGTGAAAC 57.646 29.630 20.06 0.00 35.75 2.78
284 323 5.313712 GGTCTGGAAAGATTTGGACAAGTA 58.686 41.667 0.00 0.00 0.00 2.24
298 337 3.521937 AGATTTATCACCCGGTCTGGAAA 59.478 43.478 0.00 0.83 42.00 3.13
306 345 4.821805 ACAAGCATAAGATTTATCACCCGG 59.178 41.667 0.00 0.00 0.00 5.73
392 432 5.039333 GCTGGAATTTTGTATGTCATCAGC 58.961 41.667 0.00 0.00 0.00 4.26
393 433 5.125900 TGGCTGGAATTTTGTATGTCATCAG 59.874 40.000 0.00 0.00 0.00 2.90
412 452 1.442769 ACGCAGTATCTTTGTGGCTG 58.557 50.000 0.00 0.00 41.94 4.85
413 453 3.935993 ACGCAGTATCTTTGTGGCT 57.064 47.368 0.00 0.00 41.94 4.75
517 559 5.173774 CTGACAAAGCACATACACAAAGT 57.826 39.130 0.00 0.00 0.00 2.66
751 794 1.372087 CTTTTGAGCGGGCTAGCAGG 61.372 60.000 18.24 8.52 40.15 4.85
761 810 4.675190 ATGAGTGTTCATCTTTTGAGCG 57.325 40.909 0.00 0.00 39.94 5.03
851 900 2.430921 ACAAAGACGGCGAGCGAG 60.431 61.111 16.62 2.57 0.00 5.03
852 901 2.430244 GACAAAGACGGCGAGCGA 60.430 61.111 16.62 0.00 0.00 4.93
853 902 3.479269 GGACAAAGACGGCGAGCG 61.479 66.667 16.62 0.00 0.00 5.03
854 903 3.479269 CGGACAAAGACGGCGAGC 61.479 66.667 16.62 4.95 0.00 5.03
953 1009 1.001158 GCTACCTAGCTAGCTCCAACG 60.001 57.143 23.26 9.57 45.62 4.10
981 1037 5.126396 TCATGTCGAGCTATCACCAATAG 57.874 43.478 0.00 0.00 40.42 1.73
982 1038 4.021981 CCTCATGTCGAGCTATCACCAATA 60.022 45.833 0.00 0.00 40.78 1.90
990 1046 1.810606 CGGCCCTCATGTCGAGCTAT 61.811 60.000 0.00 0.00 40.78 2.97
1539 1595 2.676471 GGATTGTTGGTGGCCGCT 60.676 61.111 17.49 0.00 0.00 5.52
1582 1641 3.188786 CTTGCTCGTAGTGGCCGC 61.189 66.667 8.71 8.71 0.00 6.53
1590 1649 2.742053 GGTTTCTTGATGCTTGCTCGTA 59.258 45.455 0.00 0.00 0.00 3.43
1593 1652 2.163211 GGAGGTTTCTTGATGCTTGCTC 59.837 50.000 0.00 0.00 0.00 4.26
1684 1743 2.344203 CGACCCTCGTCTTGCTCCT 61.344 63.158 0.00 0.00 36.82 3.69
2500 2562 1.400846 GCTACGGCCCTAAAGCTTTTC 59.599 52.381 18.47 4.61 32.18 2.29
2678 2752 1.078848 GGACTGATTGACTGCGCCT 60.079 57.895 4.18 0.00 0.00 5.52
3126 3216 1.815421 CTGGTGGCCATGCTCGTAC 60.815 63.158 9.72 0.00 30.82 3.67
3507 3597 2.342279 CCGAAGACGAGGTTGGCA 59.658 61.111 0.00 0.00 42.66 4.92
3648 3738 4.175489 GCGTCGTAGAGCCGCTCA 62.175 66.667 22.29 5.84 46.26 4.26
3687 3777 4.872124 TCAAAGTCATCCATGAGAATGACG 59.128 41.667 20.48 12.43 45.68 4.35
3708 3798 2.431683 GACTGGTTGGCCTGCTCA 59.568 61.111 3.32 0.00 37.23 4.26
3718 3808 2.883828 CGACCTGGCAGGACTGGTT 61.884 63.158 38.99 16.59 41.96 3.67
3720 3810 4.087892 CCGACCTGGCAGGACTGG 62.088 72.222 38.99 29.54 37.67 4.00
4029 4119 3.323403 ACAAGTCCTCCTGTCTTCTGAAG 59.677 47.826 11.18 11.18 0.00 3.02
4040 4130 1.421268 TGCACAATCACAAGTCCTCCT 59.579 47.619 0.00 0.00 0.00 3.69
4474 4565 9.148879 AGAGCTAATCATACATGTAGTTAACCT 57.851 33.333 11.91 8.93 0.00 3.50
4475 4566 9.765795 AAGAGCTAATCATACATGTAGTTAACC 57.234 33.333 11.91 5.21 0.00 2.85
4716 4810 3.492102 TGCCTTCCAACTCCATATAGC 57.508 47.619 0.00 0.00 0.00 2.97
4784 4878 4.685924 CACACAGACTGGCAAAAGAATTT 58.314 39.130 7.51 0.00 42.41 1.82
4785 4879 3.491447 GCACACAGACTGGCAAAAGAATT 60.491 43.478 7.51 0.00 0.00 2.17
4787 4881 1.405105 GCACACAGACTGGCAAAAGAA 59.595 47.619 7.51 0.00 0.00 2.52
4788 4882 1.024271 GCACACAGACTGGCAAAAGA 58.976 50.000 7.51 0.00 0.00 2.52
4789 4883 0.740149 TGCACACAGACTGGCAAAAG 59.260 50.000 7.51 0.00 32.54 2.27
4794 4888 2.005451 CTAAGATGCACACAGACTGGC 58.995 52.381 7.51 1.18 0.00 4.85
4807 4918 4.063689 CCAGCCTCTGCATAACTAAGATG 58.936 47.826 0.00 0.00 41.13 2.90
4815 4926 0.698238 AACACCCAGCCTCTGCATAA 59.302 50.000 0.00 0.00 41.13 1.90
4827 4938 3.117663 AGAAGAACTAAAGGCAACACCCA 60.118 43.478 0.00 0.00 40.58 4.51
4835 4946 4.156190 GGCAAAGGTAGAAGAACTAAAGGC 59.844 45.833 0.00 0.00 32.49 4.35
4844 4955 6.779860 AGAATTGTAAGGCAAAGGTAGAAGA 58.220 36.000 0.00 0.00 40.91 2.87
4856 4967 3.303132 CCGACGCAATAGAATTGTAAGGC 60.303 47.826 1.94 0.00 0.00 4.35
4860 4971 5.653507 ACTTACCGACGCAATAGAATTGTA 58.346 37.500 1.94 0.00 0.00 2.41
4866 4977 4.194640 AGTCTACTTACCGACGCAATAGA 58.805 43.478 0.00 0.00 35.38 1.98
4916 5027 7.551035 TTTTGTTGTTTTTGGATGATCCTTG 57.449 32.000 13.44 0.00 37.46 3.61
4944 5055 4.738998 TCCATGTTGCCTGCCCCG 62.739 66.667 0.00 0.00 0.00 5.73
4945 5056 1.266867 AAATCCATGTTGCCTGCCCC 61.267 55.000 0.00 0.00 0.00 5.80
4946 5057 0.614812 AAAATCCATGTTGCCTGCCC 59.385 50.000 0.00 0.00 0.00 5.36
4947 5058 2.477845 AAAAATCCATGTTGCCTGCC 57.522 45.000 0.00 0.00 0.00 4.85
4965 5076 1.074926 TTGCCTGCCCCCTCAAAAA 60.075 52.632 0.00 0.00 0.00 1.94
4966 5077 1.836604 GTTGCCTGCCCCCTCAAAA 60.837 57.895 0.00 0.00 0.00 2.44
4967 5078 2.203625 GTTGCCTGCCCCCTCAAA 60.204 61.111 0.00 0.00 0.00 2.69
4968 5079 2.855770 ATGTTGCCTGCCCCCTCAA 61.856 57.895 0.00 0.00 0.00 3.02
4969 5080 3.267233 ATGTTGCCTGCCCCCTCA 61.267 61.111 0.00 0.00 0.00 3.86
4970 5081 2.210144 TACATGTTGCCTGCCCCCTC 62.210 60.000 2.30 0.00 0.00 4.30
4971 5082 1.583784 ATACATGTTGCCTGCCCCCT 61.584 55.000 2.30 0.00 0.00 4.79
4988 5099 7.284489 GCATGACCTTCCATTACCTACAAAATA 59.716 37.037 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.