Multiple sequence alignment - TraesCS2B01G313700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G313700 chr2B 100.000 5005 0 0 1 5005 448903796 448908800 0.000000e+00 9243.0
1 TraesCS2B01G313700 chr2B 87.042 409 40 10 2331 2737 448905928 448906325 2.750000e-122 449.0
2 TraesCS2B01G313700 chr2B 87.042 409 40 10 2133 2530 448906126 448906532 2.750000e-122 449.0
3 TraesCS2B01G313700 chr2B 94.118 119 7 0 4432 4550 662882256 662882138 1.110000e-41 182.0
4 TraesCS2B01G313700 chr2B 86.508 126 17 0 1923 2048 206754553 206754428 6.760000e-29 139.0
5 TraesCS2B01G313700 chr2B 85.821 134 16 2 631 762 230976299 230976431 6.760000e-29 139.0
6 TraesCS2B01G313700 chr2A 89.940 2157 131 21 764 2889 511473974 511476075 0.000000e+00 2702.0
7 TraesCS2B01G313700 chr2A 94.074 540 18 8 3573 4107 511476727 511477257 0.000000e+00 808.0
8 TraesCS2B01G313700 chr2A 90.363 633 33 10 1 629 687071502 687072110 0.000000e+00 806.0
9 TraesCS2B01G313700 chr2A 89.338 619 41 10 2974 3577 511476077 511476685 0.000000e+00 754.0
10 TraesCS2B01G313700 chr2A 92.144 471 20 7 4546 5004 511477698 511478163 0.000000e+00 649.0
11 TraesCS2B01G313700 chr2A 88.442 398 43 3 2331 2727 511475336 511475731 1.260000e-130 477.0
12 TraesCS2B01G313700 chr2A 90.939 309 14 8 4137 4441 511477380 511477678 2.170000e-108 403.0
13 TraesCS2B01G313700 chr2A 93.388 121 8 0 4430 4550 749091914 749092034 3.980000e-41 180.0
14 TraesCS2B01G313700 chr2A 87.121 132 16 1 631 762 753702076 753702206 1.120000e-31 148.0
15 TraesCS2B01G313700 chr2A 94.681 94 5 0 2887 2980 694455386 694455293 4.040000e-31 147.0
16 TraesCS2B01G313700 chr2A 86.154 130 14 1 1923 2048 155590898 155591027 2.430000e-28 137.0
17 TraesCS2B01G313700 chr2A 91.860 86 7 0 4353 4438 511477380 511477465 2.450000e-23 121.0
18 TraesCS2B01G313700 chr2D 89.378 2137 135 26 783 2890 377303226 377305299 0.000000e+00 2604.0
19 TraesCS2B01G313700 chr2D 89.355 620 42 10 2972 3577 377305298 377305907 0.000000e+00 758.0
20 TraesCS2B01G313700 chr2D 95.137 473 13 4 3639 4107 377306124 377306590 0.000000e+00 737.0
21 TraesCS2B01G313700 chr2D 92.905 451 17 8 4563 5004 377306996 377307440 4.220000e-180 641.0
22 TraesCS2B01G313700 chr2D 89.169 397 42 1 2331 2727 377304559 377304954 1.250000e-135 494.0
23 TraesCS2B01G313700 chr2D 84.712 399 41 9 2133 2530 377304766 377305145 1.020000e-101 381.0
24 TraesCS2B01G313700 chr2D 93.478 138 9 0 4304 4441 377306790 377306927 6.570000e-49 206.0
25 TraesCS2B01G313700 chr2D 93.617 94 6 0 1955 2048 78690802 78690895 1.880000e-29 141.0
26 TraesCS2B01G313700 chr2D 83.333 132 21 1 631 762 29174786 29174916 2.450000e-23 121.0
27 TraesCS2B01G313700 chr1B 92.714 398 24 2 1 394 296477319 296476923 2.020000e-158 569.0
28 TraesCS2B01G313700 chr1B 93.361 241 16 0 391 631 296349622 296349382 1.710000e-94 357.0
29 TraesCS2B01G313700 chr3A 95.238 210 10 0 1 210 726293604 726293395 2.890000e-87 333.0
30 TraesCS2B01G313700 chr3A 95.238 210 10 0 1 210 726295889 726295680 2.890000e-87 333.0
31 TraesCS2B01G313700 chr7B 98.182 110 2 0 4440 4549 622685439 622685548 5.110000e-45 193.0
32 TraesCS2B01G313700 chr3B 98.165 109 2 0 4438 4546 84898790 84898682 1.840000e-44 191.0
33 TraesCS2B01G313700 chr3B 92.784 97 7 0 2889 2985 403459339 403459243 1.880000e-29 141.0
34 TraesCS2B01G313700 chr1D 97.297 111 3 0 4440 4550 169367432 169367542 6.610000e-44 189.0
35 TraesCS2B01G313700 chr1D 87.692 130 15 1 633 762 138561870 138561742 3.120000e-32 150.0
36 TraesCS2B01G313700 chr1D 93.617 94 6 0 2889 2982 302256623 302256716 1.880000e-29 141.0
37 TraesCS2B01G313700 chr4B 96.460 113 4 0 4436 4548 653417899 653417787 2.380000e-43 187.0
38 TraesCS2B01G313700 chr4B 94.737 95 5 0 2887 2981 640017273 640017367 1.120000e-31 148.0
39 TraesCS2B01G313700 chr7A 94.872 117 6 0 4432 4548 713754700 713754816 3.080000e-42 183.0
40 TraesCS2B01G313700 chr7A 92.857 98 5 1 2884 2979 14840564 14840661 1.880000e-29 141.0
41 TraesCS2B01G313700 chr7A 83.704 135 17 4 631 762 77704906 77704774 6.800000e-24 122.0
42 TraesCS2B01G313700 chr6B 94.915 118 4 2 4428 4544 715630443 715630327 3.080000e-42 183.0
43 TraesCS2B01G313700 chr6B 92.857 98 5 1 2884 2979 697663008 697663105 1.880000e-29 141.0
44 TraesCS2B01G313700 chr6B 91.837 98 6 1 2884 2979 270748984 270749081 8.740000e-28 135.0
45 TraesCS2B01G313700 chr6B 91.837 98 6 1 2884 2979 270787956 270788053 8.740000e-28 135.0
46 TraesCS2B01G313700 chr6B 87.500 120 12 2 1931 2048 555341995 555341877 8.740000e-28 135.0
47 TraesCS2B01G313700 chr5B 91.473 129 9 2 4419 4546 473290724 473290851 5.150000e-40 176.0
48 TraesCS2B01G313700 chr5B 92.381 105 8 0 1930 2034 314957215 314957319 3.120000e-32 150.0
49 TraesCS2B01G313700 chr5B 84.848 132 19 1 631 762 700904995 700904865 1.130000e-26 132.0
50 TraesCS2B01G313700 chr3D 89.313 131 13 1 631 761 593799895 593800024 4.010000e-36 163.0
51 TraesCS2B01G313700 chr3D 86.555 119 15 1 1931 2048 210637130 210637248 4.070000e-26 130.0
52 TraesCS2B01G313700 chr5D 91.150 113 9 1 1935 2047 13715210 13715099 8.680000e-33 152.0
53 TraesCS2B01G313700 chr5D 86.364 132 15 3 633 762 377176185 377176055 1.880000e-29 141.0
54 TraesCS2B01G313700 chr5D 84.091 132 20 1 631 762 10751711 10751841 5.260000e-25 126.0
55 TraesCS2B01G313700 chr6D 92.000 100 7 1 2888 2987 427344854 427344952 6.760000e-29 139.0
56 TraesCS2B01G313700 chr4A 77.778 153 34 0 82 234 196570393 196570241 1.480000e-15 95.3
57 TraesCS2B01G313700 chr5A 100.000 40 0 0 939 978 502289476 502289437 1.930000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G313700 chr2B 448903796 448908800 5004 False 3380.333333 9243 91.361333 1 5005 3 chr2B.!!$F2 5004
1 TraesCS2B01G313700 chr2A 511473974 511478163 4189 False 844.857143 2702 90.962429 764 5004 7 chr2A.!!$F5 4240
2 TraesCS2B01G313700 chr2A 687071502 687072110 608 False 806.000000 806 90.363000 1 629 1 chr2A.!!$F2 628
3 TraesCS2B01G313700 chr2D 377303226 377307440 4214 False 831.571429 2604 90.590571 783 5004 7 chr2D.!!$F3 4221
4 TraesCS2B01G313700 chr3A 726293395 726295889 2494 True 333.000000 333 95.238000 1 210 2 chr3A.!!$R1 209

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
657 662 0.107165 TTCGATCCCTCTCTCGAGCA 60.107 55.0 7.81 0.0 43.94 4.26 F
860 865 0.319900 CCGTGGCCTAGAATGGATCG 60.320 60.0 3.32 0.0 0.00 3.69 F
1267 1276 0.398696 TTTGCCATGGTACGTCCTGT 59.601 50.0 14.67 0.0 37.07 4.00 F
2217 2243 1.191096 GCAACAGAAATTATGCCGCG 58.809 50.0 0.00 0.0 32.73 6.46 F
3426 3469 0.111639 ACAACCTTGGTATTGGCCGT 59.888 50.0 0.00 0.0 0.00 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1966 1991 0.469331 TATCCCTACTCAGCACCCGG 60.469 60.000 0.00 0.0 0.00 5.73 R
2792 2829 0.321671 CCAGTCGCTCCTTTTCTGGA 59.678 55.000 3.76 0.0 45.76 3.86 R
3133 3173 1.480954 ACGTCAGAAACCAGCGGATAT 59.519 47.619 1.50 0.0 0.00 1.63 R
3824 4037 0.236711 CAGCGAGTGCAAAGGACAAG 59.763 55.000 0.00 0.0 46.23 3.16 R
4412 4728 0.255890 GCACCTTCCCATCAGGCTTA 59.744 55.000 0.00 0.0 34.32 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 2.106511 AGCTAGCCTCCAAACAAAGACA 59.893 45.455 12.13 0.00 0.00 3.41
93 94 1.066573 AGCTCGGTCCATGACTTCTTG 60.067 52.381 0.00 0.00 32.47 3.02
135 136 1.069090 AGAACGACGCTCAAGCCAA 59.931 52.632 0.52 0.00 37.91 4.52
160 161 1.597195 CACGCTGTGTCTTTACTGCAA 59.403 47.619 0.00 0.00 43.20 4.08
195 196 1.202428 GCTGACCTGACCGAGAATACC 60.202 57.143 0.00 0.00 0.00 2.73
239 240 2.029838 CAGAAATCTTCCTGGACCCG 57.970 55.000 0.00 0.00 0.00 5.28
240 241 1.555075 CAGAAATCTTCCTGGACCCGA 59.445 52.381 0.00 0.00 0.00 5.14
241 242 1.834263 AGAAATCTTCCTGGACCCGAG 59.166 52.381 0.00 0.00 0.00 4.63
242 243 1.831736 GAAATCTTCCTGGACCCGAGA 59.168 52.381 0.00 0.00 0.00 4.04
243 244 1.952621 AATCTTCCTGGACCCGAGAA 58.047 50.000 0.00 0.00 0.00 2.87
244 245 1.196012 ATCTTCCTGGACCCGAGAAC 58.804 55.000 0.00 0.00 0.00 3.01
245 246 0.114560 TCTTCCTGGACCCGAGAACT 59.885 55.000 0.00 0.00 0.00 3.01
246 247 0.533032 CTTCCTGGACCCGAGAACTC 59.467 60.000 0.00 0.00 0.00 3.01
247 248 0.178944 TTCCTGGACCCGAGAACTCA 60.179 55.000 0.00 0.00 0.00 3.41
248 249 0.612174 TCCTGGACCCGAGAACTCAG 60.612 60.000 0.00 0.00 0.00 3.35
249 250 1.216710 CTGGACCCGAGAACTCAGC 59.783 63.158 2.78 0.00 0.00 4.26
250 251 2.182030 GGACCCGAGAACTCAGCG 59.818 66.667 2.78 0.00 0.00 5.18
251 252 2.182030 GACCCGAGAACTCAGCGG 59.818 66.667 0.00 0.00 44.42 5.52
256 257 3.425578 CGAGAACTCAGCGGAATGT 57.574 52.632 2.78 0.00 0.00 2.71
257 258 1.714794 CGAGAACTCAGCGGAATGTT 58.285 50.000 2.78 0.00 0.00 2.71
258 259 2.876091 CGAGAACTCAGCGGAATGTTA 58.124 47.619 2.78 0.00 0.00 2.41
259 260 3.250744 CGAGAACTCAGCGGAATGTTAA 58.749 45.455 2.78 0.00 0.00 2.01
260 261 3.304559 CGAGAACTCAGCGGAATGTTAAG 59.695 47.826 2.78 0.00 0.00 1.85
261 262 3.600388 AGAACTCAGCGGAATGTTAAGG 58.400 45.455 0.00 0.00 0.00 2.69
267 268 2.073816 AGCGGAATGTTAAGGACAACG 58.926 47.619 0.00 0.00 42.62 4.10
293 294 4.940046 CACATCAGGAGCTATCAAGTGTTT 59.060 41.667 0.00 0.00 0.00 2.83
296 297 4.825422 TCAGGAGCTATCAAGTGTTTCTG 58.175 43.478 0.00 0.00 0.00 3.02
324 325 0.462047 GCCTATCCCACGTTCTGGTG 60.462 60.000 0.00 0.00 38.60 4.17
325 326 0.462047 CCTATCCCACGTTCTGGTGC 60.462 60.000 0.00 0.00 38.60 5.01
360 365 8.867112 TTAGTTCAGATACATGTACGGATTTC 57.133 34.615 7.96 0.54 0.00 2.17
373 378 0.179108 GGATTTCCAGACCTCGGACG 60.179 60.000 0.00 0.00 35.64 4.79
407 412 5.596763 AGTTTGTAGTCCCTAGGTATCCAA 58.403 41.667 8.29 1.26 0.00 3.53
412 417 6.895782 TGTAGTCCCTAGGTATCCAATTTTG 58.104 40.000 8.29 0.00 0.00 2.44
457 462 4.891756 ACCATTGCCAATCCTCTTGATTAG 59.108 41.667 0.00 0.00 41.85 1.73
503 508 3.069980 GAGGATCGAGCGCCACACT 62.070 63.158 2.29 0.00 0.00 3.55
515 520 1.374758 CCACACTTGAGACGGAGCC 60.375 63.158 0.00 0.00 0.00 4.70
519 524 2.202676 CTTGAGACGGAGCCGAGC 60.203 66.667 16.83 7.15 42.83 5.03
521 526 4.742649 TGAGACGGAGCCGAGCCT 62.743 66.667 16.83 9.16 42.83 4.58
535 540 2.093658 CCGAGCCTAAAGTAGCTTCCAA 60.094 50.000 0.00 0.00 40.11 3.53
557 562 9.184523 TCCAATAAATGACAGTTTGGGTAATAG 57.815 33.333 6.53 0.00 37.89 1.73
569 574 5.347620 TTGGGTAATAGCTCGCTTTAAGA 57.652 39.130 0.00 0.00 0.00 2.10
614 619 0.178998 CCTGCATTAGCCTCCATGCT 60.179 55.000 9.52 0.00 45.21 3.79
622 627 2.671070 CCTCCATGCTTGACGGGT 59.329 61.111 0.22 0.00 0.00 5.28
629 634 2.093658 CCATGCTTGACGGGTTAGTAGT 60.094 50.000 0.22 0.00 0.00 2.73
630 635 2.736144 TGCTTGACGGGTTAGTAGTG 57.264 50.000 0.00 0.00 0.00 2.74
631 636 1.965643 TGCTTGACGGGTTAGTAGTGT 59.034 47.619 0.00 0.00 0.00 3.55
632 637 2.029649 TGCTTGACGGGTTAGTAGTGTC 60.030 50.000 0.00 0.00 0.00 3.67
633 638 2.673326 GCTTGACGGGTTAGTAGTGTCC 60.673 54.545 0.00 0.00 0.00 4.02
634 639 1.549203 TGACGGGTTAGTAGTGTCCC 58.451 55.000 0.00 0.00 36.82 4.46
635 640 1.076024 TGACGGGTTAGTAGTGTCCCT 59.924 52.381 9.29 0.00 37.92 4.20
636 641 2.174360 GACGGGTTAGTAGTGTCCCTT 58.826 52.381 9.29 1.79 37.92 3.95
637 642 1.897802 ACGGGTTAGTAGTGTCCCTTG 59.102 52.381 9.29 0.24 37.92 3.61
638 643 1.897802 CGGGTTAGTAGTGTCCCTTGT 59.102 52.381 9.29 0.00 37.92 3.16
639 644 2.301009 CGGGTTAGTAGTGTCCCTTGTT 59.699 50.000 9.29 0.00 37.92 2.83
640 645 3.615834 CGGGTTAGTAGTGTCCCTTGTTC 60.616 52.174 9.29 0.00 37.92 3.18
641 646 3.582780 GGTTAGTAGTGTCCCTTGTTCG 58.417 50.000 0.00 0.00 0.00 3.95
642 647 3.256631 GGTTAGTAGTGTCCCTTGTTCGA 59.743 47.826 0.00 0.00 0.00 3.71
643 648 4.081807 GGTTAGTAGTGTCCCTTGTTCGAT 60.082 45.833 0.00 0.00 0.00 3.59
644 649 3.870633 AGTAGTGTCCCTTGTTCGATC 57.129 47.619 0.00 0.00 0.00 3.69
645 650 2.496470 AGTAGTGTCCCTTGTTCGATCC 59.504 50.000 0.00 0.00 0.00 3.36
646 651 0.613777 AGTGTCCCTTGTTCGATCCC 59.386 55.000 0.00 0.00 0.00 3.85
647 652 0.613777 GTGTCCCTTGTTCGATCCCT 59.386 55.000 0.00 0.00 0.00 4.20
648 653 0.902531 TGTCCCTTGTTCGATCCCTC 59.097 55.000 0.00 0.00 0.00 4.30
649 654 1.196012 GTCCCTTGTTCGATCCCTCT 58.804 55.000 0.00 0.00 0.00 3.69
650 655 1.137282 GTCCCTTGTTCGATCCCTCTC 59.863 57.143 0.00 0.00 0.00 3.20
651 656 1.007238 TCCCTTGTTCGATCCCTCTCT 59.993 52.381 0.00 0.00 0.00 3.10
652 657 1.410882 CCCTTGTTCGATCCCTCTCTC 59.589 57.143 0.00 0.00 0.00 3.20
653 658 1.066303 CCTTGTTCGATCCCTCTCTCG 59.934 57.143 0.00 0.00 36.25 4.04
654 659 2.017782 CTTGTTCGATCCCTCTCTCGA 58.982 52.381 0.00 0.00 41.76 4.04
655 660 1.669604 TGTTCGATCCCTCTCTCGAG 58.330 55.000 5.93 5.93 43.94 4.04
656 661 0.309612 GTTCGATCCCTCTCTCGAGC 59.690 60.000 7.81 0.00 43.94 5.03
657 662 0.107165 TTCGATCCCTCTCTCGAGCA 60.107 55.000 7.81 0.00 43.94 4.26
658 663 0.816018 TCGATCCCTCTCTCGAGCAC 60.816 60.000 7.81 0.00 38.86 4.40
659 664 0.817634 CGATCCCTCTCTCGAGCACT 60.818 60.000 7.81 0.00 37.05 4.40
660 665 0.951558 GATCCCTCTCTCGAGCACTC 59.048 60.000 7.81 0.00 35.90 3.51
661 666 0.550914 ATCCCTCTCTCGAGCACTCT 59.449 55.000 7.81 0.00 35.90 3.24
662 667 0.329931 TCCCTCTCTCGAGCACTCTT 59.670 55.000 7.81 0.00 35.90 2.85
663 668 1.181786 CCCTCTCTCGAGCACTCTTT 58.818 55.000 7.81 0.00 35.90 2.52
664 669 1.548269 CCCTCTCTCGAGCACTCTTTT 59.452 52.381 7.81 0.00 35.90 2.27
665 670 2.028567 CCCTCTCTCGAGCACTCTTTTT 60.029 50.000 7.81 0.00 35.90 1.94
684 689 4.993029 TTTTCGGGATTTTTCACTGTGT 57.007 36.364 7.79 0.00 0.00 3.72
685 690 4.993029 TTTCGGGATTTTTCACTGTGTT 57.007 36.364 7.79 0.00 0.00 3.32
686 691 3.980646 TCGGGATTTTTCACTGTGTTG 57.019 42.857 7.79 0.00 0.00 3.33
687 692 2.034053 TCGGGATTTTTCACTGTGTTGC 59.966 45.455 7.79 0.00 0.00 4.17
688 693 2.223688 CGGGATTTTTCACTGTGTTGCA 60.224 45.455 7.79 0.00 0.00 4.08
689 694 3.736433 CGGGATTTTTCACTGTGTTGCAA 60.736 43.478 7.79 0.00 0.00 4.08
690 695 4.379652 GGGATTTTTCACTGTGTTGCAAT 58.620 39.130 0.59 2.84 0.00 3.56
691 696 5.537188 GGGATTTTTCACTGTGTTGCAATA 58.463 37.500 0.59 0.00 0.00 1.90
692 697 5.988561 GGGATTTTTCACTGTGTTGCAATAA 59.011 36.000 0.59 0.00 0.00 1.40
693 698 6.650390 GGGATTTTTCACTGTGTTGCAATAAT 59.350 34.615 0.59 2.15 0.00 1.28
694 699 7.173047 GGGATTTTTCACTGTGTTGCAATAATT 59.827 33.333 0.59 0.00 0.00 1.40
695 700 8.011106 GGATTTTTCACTGTGTTGCAATAATTG 58.989 33.333 0.59 0.00 0.00 2.32
696 701 6.841443 TTTTCACTGTGTTGCAATAATTGG 57.159 33.333 0.59 0.00 0.00 3.16
697 702 3.911868 TCACTGTGTTGCAATAATTGGC 58.088 40.909 0.59 0.00 0.00 4.52
698 703 2.995258 CACTGTGTTGCAATAATTGGCC 59.005 45.455 0.59 0.00 0.00 5.36
699 704 2.261345 CTGTGTTGCAATAATTGGCCG 58.739 47.619 0.59 0.00 0.00 6.13
700 705 1.067283 TGTGTTGCAATAATTGGCCGG 60.067 47.619 0.59 0.00 0.00 6.13
701 706 1.067213 GTGTTGCAATAATTGGCCGGT 60.067 47.619 0.59 0.00 0.00 5.28
702 707 1.203523 TGTTGCAATAATTGGCCGGTC 59.796 47.619 0.59 0.00 0.00 4.79
703 708 0.820871 TTGCAATAATTGGCCGGTCC 59.179 50.000 2.12 5.67 0.00 4.46
704 709 0.323816 TGCAATAATTGGCCGGTCCA 60.324 50.000 12.86 12.86 44.85 4.02
713 718 4.459089 GCCGGTCCAGCTGGAGTC 62.459 72.222 35.92 26.96 46.49 3.36
714 719 4.135153 CCGGTCCAGCTGGAGTCG 62.135 72.222 35.92 34.80 46.49 4.18
715 720 4.135153 CGGTCCAGCTGGAGTCGG 62.135 72.222 35.92 23.45 46.49 4.79
716 721 3.775654 GGTCCAGCTGGAGTCGGG 61.776 72.222 35.92 6.69 46.49 5.14
717 722 4.459089 GTCCAGCTGGAGTCGGGC 62.459 72.222 35.92 18.94 46.49 6.13
720 725 4.463879 CAGCTGGAGTCGGGCCTG 62.464 72.222 4.71 4.71 0.00 4.85
722 727 4.767255 GCTGGAGTCGGGCCTGTG 62.767 72.222 12.43 0.00 0.00 3.66
723 728 4.767255 CTGGAGTCGGGCCTGTGC 62.767 72.222 12.43 6.12 0.00 4.57
750 755 2.574212 GCAATTCGCCGCAACGAG 60.574 61.111 0.00 0.00 44.00 4.18
751 756 2.574212 CAATTCGCCGCAACGAGC 60.574 61.111 0.00 0.00 44.00 5.03
760 765 4.285149 GCAACGAGCGGCGCATAG 62.285 66.667 35.02 24.98 46.04 2.23
761 766 3.630148 CAACGAGCGGCGCATAGG 61.630 66.667 35.02 20.82 46.04 2.57
762 767 4.891727 AACGAGCGGCGCATAGGG 62.892 66.667 35.02 19.01 46.04 3.53
832 837 4.759516 AAACTACATACACGGGCTTTTG 57.240 40.909 0.00 0.00 0.00 2.44
860 865 0.319900 CCGTGGCCTAGAATGGATCG 60.320 60.000 3.32 0.00 0.00 3.69
873 878 3.634397 ATGGATCGAAGAAGCTTCCAA 57.366 42.857 22.81 6.50 43.58 3.53
879 884 5.124617 GGATCGAAGAAGCTTCCAAAATTCT 59.875 40.000 22.81 5.05 43.58 2.40
1232 1241 2.644992 GGAGGTTTGTTGCGCCTG 59.355 61.111 4.18 0.00 31.89 4.85
1265 1274 1.883926 GTTTTTGCCATGGTACGTCCT 59.116 47.619 14.67 0.00 37.07 3.85
1267 1276 0.398696 TTTGCCATGGTACGTCCTGT 59.601 50.000 14.67 0.00 37.07 4.00
1292 1302 4.766373 AGTGGAATTTCATGTGTGTATGCA 59.234 37.500 0.00 0.00 0.00 3.96
1294 1304 6.602803 AGTGGAATTTCATGTGTGTATGCATA 59.397 34.615 1.16 1.16 0.00 3.14
1296 1306 7.922278 GTGGAATTTCATGTGTGTATGCATATT 59.078 33.333 10.16 0.00 0.00 1.28
1304 1314 5.006386 TGTGTGTATGCATATTTGTGTCCA 58.994 37.500 10.16 0.00 0.00 4.02
1337 1347 1.832167 GCTGGTGGGGAACAAAGCA 60.832 57.895 0.00 0.00 39.59 3.91
1349 1359 2.668550 AAAGCACCGGACTTCGCC 60.669 61.111 9.46 0.00 37.59 5.54
1412 1422 1.398692 AACCAACTGCATTGTCCGTT 58.601 45.000 0.00 0.00 36.47 4.44
1413 1423 1.398692 ACCAACTGCATTGTCCGTTT 58.601 45.000 0.00 0.00 36.47 3.60
1527 1549 2.817258 TCGGGGATGTGATGTTTTTGAC 59.183 45.455 0.00 0.00 0.00 3.18
1850 1873 4.694509 CACATAGCTGCTCTCTTGAAACTT 59.305 41.667 4.91 0.00 0.00 2.66
1852 1875 5.411053 ACATAGCTGCTCTCTTGAAACTTTC 59.589 40.000 4.91 0.00 0.00 2.62
1853 1876 3.813443 AGCTGCTCTCTTGAAACTTTCA 58.187 40.909 0.00 0.00 38.04 2.69
1934 1958 7.950512 TCTGTTTGTGTCAATGAATACCAATT 58.049 30.769 0.00 0.00 0.00 2.32
1942 1966 8.253113 GTGTCAATGAATACCAATTTTCAGGAT 58.747 33.333 0.00 0.00 35.47 3.24
1963 1988 8.470805 CAGGATATCAGTAACTGGTACCATATC 58.529 40.741 16.75 15.75 36.18 1.63
1966 1991 3.319972 TCAGTAACTGGTACCATATCGGC 59.680 47.826 16.75 4.26 32.62 5.54
2001 2026 7.746703 AGTAGGGATAAATAGGCGAATTTTCT 58.253 34.615 6.24 3.74 31.63 2.52
2013 2038 5.652452 AGGCGAATTTTCTAGTTAATTGGCT 59.348 36.000 23.66 19.37 41.91 4.75
2014 2039 5.743872 GGCGAATTTTCTAGTTAATTGGCTG 59.256 40.000 23.66 9.93 41.91 4.85
2071 2096 6.038271 ACACTATCAACTGAAACACCAAGTTC 59.962 38.462 0.00 0.00 40.26 3.01
2091 2116 2.095692 TCGGATTGTGTCAATGAATGCG 59.904 45.455 0.00 0.00 40.86 4.73
2097 2122 2.031245 TGTGTCAATGAATGCGTGTTCC 60.031 45.455 0.00 0.00 0.00 3.62
2122 2147 8.301720 CCTTCTTCATGTGAAAATTGAATCTGA 58.698 33.333 0.00 0.00 33.07 3.27
2129 2154 4.848299 GTGAAAATTGAATCTGAGCACGTC 59.152 41.667 0.00 0.00 0.00 4.34
2146 2171 4.737946 GCACGTCTGGAGCATAAGAGTTAT 60.738 45.833 0.00 0.00 0.00 1.89
2148 2173 4.222886 CGTCTGGAGCATAAGAGTTATCG 58.777 47.826 0.00 0.00 0.00 2.92
2157 2182 4.317418 GCATAAGAGTTATCGTTGCAGTCG 60.317 45.833 6.98 6.98 0.00 4.18
2191 2217 8.579850 TGAGCTTTGTTATATCTTTTGGATGT 57.420 30.769 0.00 0.00 35.98 3.06
2204 2230 7.087409 TCTTTTGGATGTATGTATGCAACAG 57.913 36.000 0.00 0.00 42.70 3.16
2215 2241 4.919206 TGTATGCAACAGAAATTATGCCG 58.081 39.130 0.00 0.00 38.00 5.69
2216 2242 2.276472 TGCAACAGAAATTATGCCGC 57.724 45.000 0.00 0.00 38.00 6.53
2217 2243 1.191096 GCAACAGAAATTATGCCGCG 58.809 50.000 0.00 0.00 32.73 6.46
2219 2245 2.223157 GCAACAGAAATTATGCCGCGTA 60.223 45.455 4.92 0.00 32.73 4.42
2220 2246 3.548014 GCAACAGAAATTATGCCGCGTAT 60.548 43.478 4.92 1.33 32.73 3.06
2308 2334 7.657354 CCATGTGCTAAATATGCTCACTAACTA 59.343 37.037 0.00 0.00 36.88 2.24
2312 2338 8.704234 GTGCTAAATATGCTCACTAACTACATC 58.296 37.037 0.00 0.00 0.00 3.06
2319 2345 5.374071 TGCTCACTAACTACATCGAGGATA 58.626 41.667 3.06 0.00 0.00 2.59
2338 2374 7.385205 CGAGGATAAATGTAGGGTGAACATAAG 59.615 40.741 0.00 0.00 36.56 1.73
2369 2405 1.975407 AGTGGCACAATGCTGGAGC 60.975 57.895 21.41 0.00 44.16 4.70
2435 2471 5.880332 GCCATGTGTGAATAGGAGAGTAAAA 59.120 40.000 0.00 0.00 0.00 1.52
2485 2521 6.765989 TGGATCTAGATTTTTGTATTCCACGG 59.234 38.462 6.70 0.00 0.00 4.94
2526 2562 4.712051 TCCATTGAGGATGAATGTAGGG 57.288 45.455 0.00 0.00 43.07 3.53
2527 2563 3.152341 CCATTGAGGATGAATGTAGGGC 58.848 50.000 0.00 0.00 38.05 5.19
2528 2564 3.181436 CCATTGAGGATGAATGTAGGGCT 60.181 47.826 0.00 0.00 38.05 5.19
2529 2565 4.042062 CCATTGAGGATGAATGTAGGGCTA 59.958 45.833 0.00 0.00 38.05 3.93
2530 2566 5.280882 CCATTGAGGATGAATGTAGGGCTAT 60.281 44.000 0.00 0.00 38.05 2.97
2531 2567 5.912149 TTGAGGATGAATGTAGGGCTATT 57.088 39.130 0.00 0.00 0.00 1.73
2532 2568 5.233083 TGAGGATGAATGTAGGGCTATTG 57.767 43.478 0.00 0.00 0.00 1.90
2533 2569 4.907269 TGAGGATGAATGTAGGGCTATTGA 59.093 41.667 0.00 0.00 0.00 2.57
2534 2570 5.012458 TGAGGATGAATGTAGGGCTATTGAG 59.988 44.000 0.00 0.00 0.00 3.02
2535 2571 4.288105 AGGATGAATGTAGGGCTATTGAGG 59.712 45.833 0.00 0.00 0.00 3.86
2536 2572 4.287067 GGATGAATGTAGGGCTATTGAGGA 59.713 45.833 0.00 0.00 0.00 3.71
2537 2573 5.045286 GGATGAATGTAGGGCTATTGAGGAT 60.045 44.000 0.00 0.00 0.00 3.24
2538 2574 5.233083 TGAATGTAGGGCTATTGAGGATG 57.767 43.478 0.00 0.00 0.00 3.51
2539 2575 4.907269 TGAATGTAGGGCTATTGAGGATGA 59.093 41.667 0.00 0.00 0.00 2.92
2540 2576 5.369404 TGAATGTAGGGCTATTGAGGATGAA 59.631 40.000 0.00 0.00 0.00 2.57
2561 2597 7.144722 TGAACATAAGAGTTAACATTGCAGG 57.855 36.000 8.61 0.00 0.00 4.85
2563 2599 5.570320 ACATAAGAGTTAACATTGCAGGGT 58.430 37.500 8.61 0.00 0.00 4.34
2564 2600 5.648092 ACATAAGAGTTAACATTGCAGGGTC 59.352 40.000 8.61 0.00 0.00 4.46
2565 2601 2.699954 AGAGTTAACATTGCAGGGTCG 58.300 47.619 8.61 0.00 0.00 4.79
2600 2636 9.508567 GAGCTTTGTTATATCTTTTGGATGAAC 57.491 33.333 0.00 0.00 35.98 3.18
2698 2734 9.357652 TCTAGATTTTTGTATACCACGTGTTAC 57.642 33.333 15.65 13.11 0.00 2.50
2748 2784 9.502091 GATGATGTAGGGCTAACACATTTATTA 57.498 33.333 0.00 0.00 33.16 0.98
2773 2810 6.180472 TCTTGTATCCCTTCTGCTTAAAAGG 58.820 40.000 0.00 0.00 41.48 3.11
2801 2838 9.204570 CACCGTTATTACCTATATCCAGAAAAG 57.795 37.037 0.00 0.00 0.00 2.27
2802 2839 8.373220 ACCGTTATTACCTATATCCAGAAAAGG 58.627 37.037 0.00 0.00 0.00 3.11
2805 2842 9.438228 GTTATTACCTATATCCAGAAAAGGAGC 57.562 37.037 0.00 0.00 41.90 4.70
2807 2844 4.223953 ACCTATATCCAGAAAAGGAGCGA 58.776 43.478 0.00 0.00 41.90 4.93
2844 2881 3.806949 ATTGCTACCCTGTCCTTTTCA 57.193 42.857 0.00 0.00 0.00 2.69
2849 2886 5.636123 TGCTACCCTGTCCTTTTCATTTTA 58.364 37.500 0.00 0.00 0.00 1.52
2897 2934 8.974292 TCATTTTATAGCCTTATACTCCCTCT 57.026 34.615 0.00 0.00 0.00 3.69
2898 2935 8.816894 TCATTTTATAGCCTTATACTCCCTCTG 58.183 37.037 0.00 0.00 0.00 3.35
2899 2936 8.598041 CATTTTATAGCCTTATACTCCCTCTGT 58.402 37.037 0.00 0.00 0.00 3.41
2900 2937 9.839185 ATTTTATAGCCTTATACTCCCTCTGTA 57.161 33.333 0.00 0.00 0.00 2.74
2901 2938 9.664777 TTTTATAGCCTTATACTCCCTCTGTAA 57.335 33.333 0.00 0.00 0.00 2.41
2902 2939 9.664777 TTTATAGCCTTATACTCCCTCTGTAAA 57.335 33.333 0.00 0.00 0.00 2.01
2903 2940 7.784470 ATAGCCTTATACTCCCTCTGTAAAG 57.216 40.000 0.00 0.00 0.00 1.85
2904 2941 5.778542 AGCCTTATACTCCCTCTGTAAAGA 58.221 41.667 0.00 0.00 0.00 2.52
2905 2942 6.203072 AGCCTTATACTCCCTCTGTAAAGAA 58.797 40.000 0.00 0.00 0.00 2.52
2906 2943 6.672657 AGCCTTATACTCCCTCTGTAAAGAAA 59.327 38.462 0.00 0.00 0.00 2.52
2907 2944 7.348537 AGCCTTATACTCCCTCTGTAAAGAAAT 59.651 37.037 0.00 0.00 0.00 2.17
2908 2945 8.648693 GCCTTATACTCCCTCTGTAAAGAAATA 58.351 37.037 0.00 0.00 0.00 1.40
2915 2952 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
2916 2953 7.434492 TCCCTCTGTAAAGAAATATAAGAGCG 58.566 38.462 0.00 0.00 0.00 5.03
2917 2954 7.069578 TCCCTCTGTAAAGAAATATAAGAGCGT 59.930 37.037 0.00 0.00 0.00 5.07
2918 2955 7.711339 CCCTCTGTAAAGAAATATAAGAGCGTT 59.289 37.037 0.00 0.00 0.00 4.84
2919 2956 9.099454 CCTCTGTAAAGAAATATAAGAGCGTTT 57.901 33.333 0.00 0.00 0.00 3.60
2936 2973 9.570488 AAGAGCGTTTAGATAACTACTTTAGTG 57.430 33.333 0.00 0.00 39.39 2.74
2937 2974 8.954350 AGAGCGTTTAGATAACTACTTTAGTGA 58.046 33.333 0.00 0.00 39.39 3.41
2938 2975 9.733219 GAGCGTTTAGATAACTACTTTAGTGAT 57.267 33.333 0.00 0.00 39.39 3.06
2939 2976 9.733219 AGCGTTTAGATAACTACTTTAGTGATC 57.267 33.333 3.29 3.29 44.00 2.92
2947 2984 9.733219 GATAACTACTTTAGTGATCTAAACGCT 57.267 33.333 4.09 0.00 41.55 5.07
2948 2985 9.733219 ATAACTACTTTAGTGATCTAAACGCTC 57.267 33.333 0.00 0.00 40.05 5.03
2949 2986 7.393841 ACTACTTTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 40.05 4.09
2950 2987 7.828712 ACTACTTTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 40.05 2.85
2951 2988 8.954350 ACTACTTTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 40.05 2.10
2952 2989 9.224058 CTACTTTAGTGATCTAAACGCTCTTAC 57.776 37.037 0.00 0.00 40.05 2.34
2953 2990 7.600065 ACTTTAGTGATCTAAACGCTCTTACA 58.400 34.615 0.00 0.00 40.05 2.41
2954 2991 8.251721 ACTTTAGTGATCTAAACGCTCTTACAT 58.748 33.333 0.00 0.00 40.05 2.29
2955 2992 8.997621 TTTAGTGATCTAAACGCTCTTACATT 57.002 30.769 0.00 0.00 40.05 2.71
2956 2993 8.997621 TTAGTGATCTAAACGCTCTTACATTT 57.002 30.769 0.00 0.00 33.79 2.32
2957 2994 7.527084 AGTGATCTAAACGCTCTTACATTTC 57.473 36.000 0.00 0.00 0.00 2.17
2958 2995 7.324178 AGTGATCTAAACGCTCTTACATTTCT 58.676 34.615 0.00 0.00 0.00 2.52
2959 2996 7.819900 AGTGATCTAAACGCTCTTACATTTCTT 59.180 33.333 0.00 0.00 0.00 2.52
2960 2997 8.443937 GTGATCTAAACGCTCTTACATTTCTTT 58.556 33.333 0.00 0.00 0.00 2.52
2961 2998 9.647797 TGATCTAAACGCTCTTACATTTCTTTA 57.352 29.630 0.00 0.00 0.00 1.85
2962 2999 9.903185 GATCTAAACGCTCTTACATTTCTTTAC 57.097 33.333 0.00 0.00 0.00 2.01
2963 3000 8.821147 TCTAAACGCTCTTACATTTCTTTACA 57.179 30.769 0.00 0.00 0.00 2.41
2964 3001 8.922676 TCTAAACGCTCTTACATTTCTTTACAG 58.077 33.333 0.00 0.00 0.00 2.74
2965 3002 7.724305 AAACGCTCTTACATTTCTTTACAGA 57.276 32.000 0.00 0.00 0.00 3.41
2966 3003 6.952935 ACGCTCTTACATTTCTTTACAGAG 57.047 37.500 0.00 0.00 0.00 3.35
2967 3004 5.869888 ACGCTCTTACATTTCTTTACAGAGG 59.130 40.000 0.00 0.00 0.00 3.69
2968 3005 5.292101 CGCTCTTACATTTCTTTACAGAGGG 59.708 44.000 0.00 0.00 34.68 4.30
2969 3006 6.407202 GCTCTTACATTTCTTTACAGAGGGA 58.593 40.000 0.00 0.00 0.00 4.20
2970 3007 6.536941 GCTCTTACATTTCTTTACAGAGGGAG 59.463 42.308 0.00 0.00 0.00 4.30
2971 3008 7.554959 TCTTACATTTCTTTACAGAGGGAGT 57.445 36.000 0.00 0.00 0.00 3.85
2972 3009 8.660295 TCTTACATTTCTTTACAGAGGGAGTA 57.340 34.615 0.00 0.00 0.00 2.59
2973 3010 8.750298 TCTTACATTTCTTTACAGAGGGAGTAG 58.250 37.037 0.00 0.00 0.00 2.57
2974 3011 6.936968 ACATTTCTTTACAGAGGGAGTAGT 57.063 37.500 0.00 0.00 0.00 2.73
2975 3012 7.317722 ACATTTCTTTACAGAGGGAGTAGTT 57.682 36.000 0.00 0.00 0.00 2.24
2976 3013 8.431910 ACATTTCTTTACAGAGGGAGTAGTTA 57.568 34.615 0.00 0.00 0.00 2.24
2977 3014 9.047947 ACATTTCTTTACAGAGGGAGTAGTTAT 57.952 33.333 0.00 0.00 0.00 1.89
2978 3015 9.892130 CATTTCTTTACAGAGGGAGTAGTTATT 57.108 33.333 0.00 0.00 0.00 1.40
2981 3018 9.765295 TTCTTTACAGAGGGAGTAGTTATTAGT 57.235 33.333 0.00 0.00 0.00 2.24
2982 3019 9.406113 TCTTTACAGAGGGAGTAGTTATTAGTC 57.594 37.037 0.00 0.00 0.00 2.59
2983 3020 9.186837 CTTTACAGAGGGAGTAGTTATTAGTCA 57.813 37.037 0.00 0.00 34.01 3.41
2984 3021 8.517062 TTACAGAGGGAGTAGTTATTAGTCAC 57.483 38.462 0.00 0.00 35.66 3.67
2985 3022 6.733509 ACAGAGGGAGTAGTTATTAGTCACT 58.266 40.000 0.00 0.00 46.08 3.41
2986 3023 6.603997 ACAGAGGGAGTAGTTATTAGTCACTG 59.396 42.308 0.00 4.75 43.95 3.66
3035 3072 6.638168 ACTGCGACATATATTTCATCGATG 57.362 37.500 19.61 19.61 34.77 3.84
3043 3080 9.809096 GACATATATTTCATCGATGTCACCTAT 57.191 33.333 24.09 15.92 43.75 2.57
3055 3095 6.071560 TCGATGTCACCTATTAAGACACTTGT 60.072 38.462 0.00 0.00 44.15 3.16
3068 3108 3.503748 AGACACTTGTAATGCTTTCTGCC 59.496 43.478 0.00 0.00 42.00 4.85
3130 3170 1.625315 TCTGGTGGACTTGGTGATCTG 59.375 52.381 0.00 0.00 0.00 2.90
3133 3173 2.441375 TGGTGGACTTGGTGATCTGAAA 59.559 45.455 0.00 0.00 0.00 2.69
3151 3191 3.938963 TGAAATATCCGCTGGTTTCTGAC 59.061 43.478 0.00 0.00 33.06 3.51
3244 3284 3.091545 ACCACCTGCTTGTTTCATATGG 58.908 45.455 2.13 0.00 0.00 2.74
3245 3285 2.159198 CCACCTGCTTGTTTCATATGGC 60.159 50.000 2.13 0.00 0.00 4.40
3254 3294 3.216800 TGTTTCATATGGCCTGCTCATC 58.783 45.455 3.32 0.00 0.00 2.92
3286 3327 9.034544 GGATATTTTGCTTTTAGTATGCCTTTG 57.965 33.333 0.00 0.00 0.00 2.77
3287 3328 9.586435 GATATTTTGCTTTTAGTATGCCTTTGT 57.414 29.630 0.00 0.00 0.00 2.83
3288 3329 7.656707 ATTTTGCTTTTAGTATGCCTTTGTG 57.343 32.000 0.00 0.00 0.00 3.33
3289 3330 4.173036 TGCTTTTAGTATGCCTTTGTGC 57.827 40.909 0.00 0.00 0.00 4.57
3290 3331 3.056891 TGCTTTTAGTATGCCTTTGTGCC 60.057 43.478 0.00 0.00 0.00 5.01
3291 3332 3.193479 GCTTTTAGTATGCCTTTGTGCCT 59.807 43.478 0.00 0.00 0.00 4.75
3292 3333 4.321974 GCTTTTAGTATGCCTTTGTGCCTT 60.322 41.667 0.00 0.00 0.00 4.35
3293 3334 5.783111 CTTTTAGTATGCCTTTGTGCCTTT 58.217 37.500 0.00 0.00 0.00 3.11
3314 3355 6.035975 CCTTTCCTTGTTTGTTGTGATGTTTC 59.964 38.462 0.00 0.00 0.00 2.78
3317 3358 6.041511 TCCTTGTTTGTTGTGATGTTTCATG 58.958 36.000 0.00 0.00 33.56 3.07
3321 3362 4.852134 TTGTTGTGATGTTTCATGAGGG 57.148 40.909 0.00 0.00 33.56 4.30
3325 3366 3.942829 TGTGATGTTTCATGAGGGTCTC 58.057 45.455 0.00 0.00 33.56 3.36
3328 3369 3.452264 TGATGTTTCATGAGGGTCTCGAT 59.548 43.478 0.00 0.00 32.35 3.59
3332 3373 4.221924 TGTTTCATGAGGGTCTCGATGTTA 59.778 41.667 0.00 0.00 32.35 2.41
3426 3469 0.111639 ACAACCTTGGTATTGGCCGT 59.888 50.000 0.00 0.00 0.00 5.68
3474 3517 6.819146 CCCTTCAGGTAGAATAACAAGAGAAC 59.181 42.308 0.00 0.00 35.25 3.01
3478 3521 8.603242 TCAGGTAGAATAACAAGAGAACAAAC 57.397 34.615 0.00 0.00 0.00 2.93
3480 3523 9.003658 CAGGTAGAATAACAAGAGAACAAACAT 57.996 33.333 0.00 0.00 0.00 2.71
3482 3525 9.220767 GGTAGAATAACAAGAGAACAAACATCT 57.779 33.333 0.00 0.00 0.00 2.90
3486 3529 9.548208 GAATAACAAGAGAACAAACATCTTAGC 57.452 33.333 0.00 0.00 32.16 3.09
3487 3530 5.597813 ACAAGAGAACAAACATCTTAGCG 57.402 39.130 0.00 0.00 32.16 4.26
3488 3531 5.057149 ACAAGAGAACAAACATCTTAGCGT 58.943 37.500 0.00 0.00 32.16 5.07
3489 3532 5.050091 ACAAGAGAACAAACATCTTAGCGTG 60.050 40.000 0.00 0.00 32.16 5.34
3490 3533 3.433615 AGAGAACAAACATCTTAGCGTGC 59.566 43.478 0.00 0.00 0.00 5.34
3491 3534 3.138304 AGAACAAACATCTTAGCGTGCA 58.862 40.909 0.00 0.00 0.00 4.57
3492 3535 3.187227 AGAACAAACATCTTAGCGTGCAG 59.813 43.478 0.00 0.00 0.00 4.41
3499 3550 3.753272 ACATCTTAGCGTGCAGTTTCATT 59.247 39.130 0.00 0.00 0.00 2.57
3501 3552 5.586243 ACATCTTAGCGTGCAGTTTCATTAT 59.414 36.000 0.00 0.00 0.00 1.28
3615 3713 1.531149 CAACGAAGCAGGTACCTGTTG 59.469 52.381 36.31 28.21 45.24 3.33
3616 3714 0.756903 ACGAAGCAGGTACCTGTTGT 59.243 50.000 36.31 26.00 45.24 3.32
3617 3715 1.140252 ACGAAGCAGGTACCTGTTGTT 59.860 47.619 36.31 27.59 45.24 2.83
3618 3716 2.366266 ACGAAGCAGGTACCTGTTGTTA 59.634 45.455 36.31 0.00 45.24 2.41
3619 3717 2.993899 CGAAGCAGGTACCTGTTGTTAG 59.006 50.000 36.31 24.16 45.24 2.34
3620 3718 2.474410 AGCAGGTACCTGTTGTTAGC 57.526 50.000 36.31 23.38 45.24 3.09
3621 3719 1.978580 AGCAGGTACCTGTTGTTAGCT 59.021 47.619 36.31 25.05 45.24 3.32
3622 3720 3.170717 AGCAGGTACCTGTTGTTAGCTA 58.829 45.455 36.31 0.00 45.24 3.32
3632 3730 7.645058 ACCTGTTGTTAGCTATAATGCAAAT 57.355 32.000 0.00 0.00 34.99 2.32
3783 3996 1.153349 GTCGATGAAGCCTGACCCC 60.153 63.158 0.00 0.00 0.00 4.95
3810 4023 0.390472 GCAAGGAGTACTTCGCTGCT 60.390 55.000 18.92 0.00 37.29 4.24
3820 4033 5.067273 AGTACTTCGCTGCTATCTAGATGT 58.933 41.667 15.79 3.86 0.00 3.06
3821 4034 4.235939 ACTTCGCTGCTATCTAGATGTG 57.764 45.455 15.79 9.05 0.00 3.21
3822 4035 3.634448 ACTTCGCTGCTATCTAGATGTGT 59.366 43.478 15.79 0.00 0.00 3.72
3823 4036 3.906014 TCGCTGCTATCTAGATGTGTC 57.094 47.619 15.79 2.48 0.00 3.67
3824 4037 2.554462 TCGCTGCTATCTAGATGTGTCC 59.446 50.000 15.79 0.61 0.00 4.02
3825 4038 2.556189 CGCTGCTATCTAGATGTGTCCT 59.444 50.000 15.79 0.00 0.00 3.85
3826 4039 3.005261 CGCTGCTATCTAGATGTGTCCTT 59.995 47.826 15.79 0.00 0.00 3.36
3867 4081 2.693074 AGTTTTGTCATGGCCGTTTCTT 59.307 40.909 0.00 0.00 0.00 2.52
3932 4146 6.955963 GCGTACAATTGACTCTGTAATTTCTG 59.044 38.462 13.59 0.00 30.11 3.02
3959 4173 2.091885 AGGGTTTGTCTGTGTGTGGATT 60.092 45.455 0.00 0.00 0.00 3.01
4053 4267 6.703165 GCTTTATTTGGAATTGATCATGGTCC 59.297 38.462 2.86 11.23 0.00 4.46
4054 4268 7.633334 GCTTTATTTGGAATTGATCATGGTCCA 60.633 37.037 15.17 15.17 36.59 4.02
4070 4284 8.131847 TCATGGTCCATTACAAATTTTGATGA 57.868 30.769 15.81 7.90 0.00 2.92
4172 4484 0.302890 GGACATGCTCATCGCTTTCG 59.697 55.000 0.00 0.00 40.11 3.46
4183 4495 1.374758 CGCTTTCGGTCAGCTCCTT 60.375 57.895 0.00 0.00 34.88 3.36
4184 4496 0.108804 CGCTTTCGGTCAGCTCCTTA 60.109 55.000 0.00 0.00 34.88 2.69
4185 4497 1.646189 GCTTTCGGTCAGCTCCTTAG 58.354 55.000 0.00 0.00 34.15 2.18
4225 4537 1.076485 ATGCCTGATGGGAAGGTGC 60.076 57.895 0.00 0.00 37.19 5.01
4248 4560 3.947910 ACATTCAGCCCAAATGACTTG 57.052 42.857 9.53 0.00 37.51 3.16
4252 4564 1.074405 TCAGCCCAAATGACTTGCTCT 59.926 47.619 0.00 0.00 33.27 4.09
4259 4571 4.083110 CCCAAATGACTTGCTCTGTAAGTG 60.083 45.833 5.83 0.00 38.49 3.16
4272 4584 1.985159 TGTAAGTGTCATGCCCCTTCT 59.015 47.619 0.00 0.00 0.00 2.85
4279 4591 2.171237 TGTCATGCCCCTTCTATCTGTG 59.829 50.000 0.00 0.00 0.00 3.66
4281 4593 2.846206 TCATGCCCCTTCTATCTGTGTT 59.154 45.455 0.00 0.00 0.00 3.32
4354 4666 6.828785 AGAATACATAGTGGTGGGAAATGTTC 59.171 38.462 0.00 0.00 33.15 3.18
4441 4757 3.343941 TGGGAAGGTGCTAACATGTAC 57.656 47.619 0.00 0.00 0.00 2.90
4442 4758 2.910319 TGGGAAGGTGCTAACATGTACT 59.090 45.455 0.00 0.00 0.00 2.73
4445 4761 3.532542 GAAGGTGCTAACATGTACTCCC 58.467 50.000 0.00 0.00 0.00 4.30
4446 4762 2.834113 AGGTGCTAACATGTACTCCCT 58.166 47.619 0.00 0.00 0.00 4.20
4447 4763 3.182152 AGGTGCTAACATGTACTCCCTT 58.818 45.455 0.00 0.00 0.00 3.95
4448 4764 3.197983 AGGTGCTAACATGTACTCCCTTC 59.802 47.826 0.00 0.00 0.00 3.46
4449 4765 3.187700 GTGCTAACATGTACTCCCTTCG 58.812 50.000 0.00 0.00 0.00 3.79
4450 4766 2.829720 TGCTAACATGTACTCCCTTCGT 59.170 45.455 0.00 0.00 0.00 3.85
4451 4767 3.259876 TGCTAACATGTACTCCCTTCGTT 59.740 43.478 0.00 0.00 0.00 3.85
4452 4768 3.864003 GCTAACATGTACTCCCTTCGTTC 59.136 47.826 0.00 0.00 0.00 3.95
4453 4769 2.649331 ACATGTACTCCCTTCGTTCG 57.351 50.000 0.00 0.00 0.00 3.95
4455 4771 1.475280 CATGTACTCCCTTCGTTCGGA 59.525 52.381 0.00 0.00 0.00 4.55
4456 4772 1.619654 TGTACTCCCTTCGTTCGGAA 58.380 50.000 0.00 0.00 0.00 4.30
4457 4773 2.173519 TGTACTCCCTTCGTTCGGAAT 58.826 47.619 0.00 0.00 33.26 3.01
4460 4776 3.242549 ACTCCCTTCGTTCGGAATTAC 57.757 47.619 0.00 0.00 33.26 1.89
4461 4777 2.830321 ACTCCCTTCGTTCGGAATTACT 59.170 45.455 0.00 0.00 33.26 2.24
4462 4778 3.260128 ACTCCCTTCGTTCGGAATTACTT 59.740 43.478 0.00 0.00 33.26 2.24
4463 4779 3.592059 TCCCTTCGTTCGGAATTACTTG 58.408 45.455 0.00 0.00 33.26 3.16
4464 4780 3.007182 TCCCTTCGTTCGGAATTACTTGT 59.993 43.478 0.00 0.00 33.26 3.16
4465 4781 3.370061 CCCTTCGTTCGGAATTACTTGTC 59.630 47.826 0.00 0.00 33.26 3.18
4466 4782 4.243270 CCTTCGTTCGGAATTACTTGTCT 58.757 43.478 0.00 0.00 33.26 3.41
4467 4783 4.326548 CCTTCGTTCGGAATTACTTGTCTC 59.673 45.833 0.00 0.00 33.26 3.36
4468 4784 3.495193 TCGTTCGGAATTACTTGTCTCG 58.505 45.455 0.00 0.00 0.00 4.04
4469 4785 2.597305 CGTTCGGAATTACTTGTCTCGG 59.403 50.000 0.00 0.00 0.00 4.63
4470 4786 3.671433 CGTTCGGAATTACTTGTCTCGGA 60.671 47.826 0.00 0.00 0.00 4.55
4471 4787 4.240096 GTTCGGAATTACTTGTCTCGGAA 58.760 43.478 0.00 0.00 0.00 4.30
4472 4788 4.524316 TCGGAATTACTTGTCTCGGAAA 57.476 40.909 0.00 0.00 0.00 3.13
4473 4789 5.080969 TCGGAATTACTTGTCTCGGAAAT 57.919 39.130 0.00 0.00 0.00 2.17
4474 4790 4.868171 TCGGAATTACTTGTCTCGGAAATG 59.132 41.667 0.00 0.00 0.00 2.32
4475 4791 4.034048 CGGAATTACTTGTCTCGGAAATGG 59.966 45.833 0.00 0.00 0.00 3.16
4476 4792 5.183228 GGAATTACTTGTCTCGGAAATGGA 58.817 41.667 0.00 0.00 0.00 3.41
4477 4793 5.823045 GGAATTACTTGTCTCGGAAATGGAT 59.177 40.000 0.00 0.00 0.00 3.41
4478 4794 6.238484 GGAATTACTTGTCTCGGAAATGGATG 60.238 42.308 0.00 0.00 0.00 3.51
4479 4795 3.703001 ACTTGTCTCGGAAATGGATGT 57.297 42.857 0.00 0.00 0.00 3.06
4480 4796 4.819105 ACTTGTCTCGGAAATGGATGTA 57.181 40.909 0.00 0.00 0.00 2.29
4481 4797 5.359194 ACTTGTCTCGGAAATGGATGTAT 57.641 39.130 0.00 0.00 0.00 2.29
4482 4798 5.360591 ACTTGTCTCGGAAATGGATGTATC 58.639 41.667 0.00 0.00 0.00 2.24
4483 4799 5.129485 ACTTGTCTCGGAAATGGATGTATCT 59.871 40.000 0.00 0.00 0.00 1.98
4484 4800 6.323996 ACTTGTCTCGGAAATGGATGTATCTA 59.676 38.462 0.00 0.00 0.00 1.98
4485 4801 6.332735 TGTCTCGGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
4486 4802 6.068670 TGTCTCGGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 0.00 2.43
4487 4803 6.549736 TGTCTCGGAAATGGATGTATCTAGAA 59.450 38.462 0.00 0.00 0.00 2.10
4488 4804 6.864165 GTCTCGGAAATGGATGTATCTAGAAC 59.136 42.308 0.00 0.00 0.00 3.01
4489 4805 6.778069 TCTCGGAAATGGATGTATCTAGAACT 59.222 38.462 0.00 0.00 0.00 3.01
4490 4806 7.942894 TCTCGGAAATGGATGTATCTAGAACTA 59.057 37.037 0.00 0.00 0.00 2.24
4491 4807 8.473358 TCGGAAATGGATGTATCTAGAACTAA 57.527 34.615 0.00 0.00 0.00 2.24
4492 4808 8.920174 TCGGAAATGGATGTATCTAGAACTAAA 58.080 33.333 0.00 0.00 0.00 1.85
4493 4809 9.542462 CGGAAATGGATGTATCTAGAACTAAAA 57.458 33.333 0.00 0.00 0.00 1.52
4517 4833 8.744008 AATACGTCTAGATACATCCATTTTCG 57.256 34.615 0.00 0.00 0.00 3.46
4518 4834 4.982916 ACGTCTAGATACATCCATTTTCGC 59.017 41.667 0.00 0.00 0.00 4.70
4519 4835 4.088638 CGTCTAGATACATCCATTTTCGCG 59.911 45.833 0.00 0.00 0.00 5.87
4520 4836 5.220381 GTCTAGATACATCCATTTTCGCGA 58.780 41.667 3.71 3.71 0.00 5.87
4521 4837 5.117287 GTCTAGATACATCCATTTTCGCGAC 59.883 44.000 9.15 0.00 0.00 5.19
4522 4838 2.794910 AGATACATCCATTTTCGCGACG 59.205 45.455 9.15 0.00 0.00 5.12
4523 4839 2.281140 TACATCCATTTTCGCGACGA 57.719 45.000 9.15 0.00 0.00 4.20
4524 4840 0.999406 ACATCCATTTTCGCGACGAG 59.001 50.000 9.15 0.00 37.14 4.18
4525 4841 0.999406 CATCCATTTTCGCGACGAGT 59.001 50.000 9.15 0.00 37.14 4.18
4526 4842 2.190161 CATCCATTTTCGCGACGAGTA 58.810 47.619 9.15 0.00 37.14 2.59
4527 4843 2.350899 TCCATTTTCGCGACGAGTAA 57.649 45.000 9.15 0.00 37.14 2.24
4528 4844 2.883574 TCCATTTTCGCGACGAGTAAT 58.116 42.857 9.15 0.88 37.14 1.89
4529 4845 3.255725 TCCATTTTCGCGACGAGTAATT 58.744 40.909 9.15 0.00 37.14 1.40
4530 4846 3.305094 TCCATTTTCGCGACGAGTAATTC 59.695 43.478 9.15 0.00 37.14 2.17
4531 4847 3.543460 CCATTTTCGCGACGAGTAATTCC 60.543 47.826 9.15 0.00 37.14 3.01
4532 4848 1.261989 TTTCGCGACGAGTAATTCCG 58.738 50.000 9.15 0.00 37.14 4.30
4533 4849 0.447406 TTCGCGACGAGTAATTCCGA 59.553 50.000 9.15 0.00 37.14 4.55
4534 4850 0.447406 TCGCGACGAGTAATTCCGAA 59.553 50.000 3.71 0.00 0.00 4.30
4535 4851 0.564767 CGCGACGAGTAATTCCGAAC 59.435 55.000 0.00 0.00 0.00 3.95
4536 4852 1.621107 GCGACGAGTAATTCCGAACA 58.379 50.000 0.00 0.00 0.00 3.18
4537 4853 1.582502 GCGACGAGTAATTCCGAACAG 59.417 52.381 0.00 0.00 0.00 3.16
4538 4854 2.730090 GCGACGAGTAATTCCGAACAGA 60.730 50.000 0.00 0.00 0.00 3.41
4539 4855 3.099362 CGACGAGTAATTCCGAACAGAG 58.901 50.000 0.00 0.00 0.00 3.35
4540 4856 3.436496 GACGAGTAATTCCGAACAGAGG 58.564 50.000 0.00 0.00 0.00 3.69
4541 4857 2.165845 ACGAGTAATTCCGAACAGAGGG 59.834 50.000 0.00 0.00 0.00 4.30
4542 4858 2.426024 CGAGTAATTCCGAACAGAGGGA 59.574 50.000 0.00 0.00 0.00 4.20
4543 4859 3.489398 CGAGTAATTCCGAACAGAGGGAG 60.489 52.174 0.00 0.00 33.01 4.30
4544 4860 3.442076 AGTAATTCCGAACAGAGGGAGT 58.558 45.455 0.00 0.00 33.01 3.85
4556 4872 3.116939 ACAGAGGGAGTAGTATCATGCCT 60.117 47.826 0.00 0.00 37.50 4.75
4589 4937 8.840321 TCTGTTTCTATCATAAAGCTAAATGGC 58.160 33.333 8.03 0.00 0.00 4.40
4694 5050 0.468029 CTGCCTCTTGTTTGTGGGGT 60.468 55.000 0.00 0.00 0.00 4.95
4695 5051 0.032615 TGCCTCTTGTTTGTGGGGTT 60.033 50.000 0.00 0.00 0.00 4.11
4881 6367 9.467258 TTTAAAGCAAGCTGAATAATGCATATC 57.533 29.630 0.00 0.00 41.18 1.63
4901 6387 3.706698 TCGTGTTCTTGTCTCAAGAGTG 58.293 45.455 11.17 4.87 0.00 3.51
4975 6611 5.477510 CAGTGCTATCTATCCACCATCTTC 58.522 45.833 0.00 0.00 0.00 2.87
4977 6613 5.843421 AGTGCTATCTATCCACCATCTTCTT 59.157 40.000 0.00 0.00 0.00 2.52
4978 6614 7.013220 AGTGCTATCTATCCACCATCTTCTTA 58.987 38.462 0.00 0.00 0.00 2.10
4979 6615 7.510685 AGTGCTATCTATCCACCATCTTCTTAA 59.489 37.037 0.00 0.00 0.00 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 4.642445 AAAAATTCCGTCAAAGGTTCGT 57.358 36.364 0.00 0.00 0.00 3.85
71 72 1.078848 AAGTCATGGACCGAGCTGC 60.079 57.895 0.00 0.00 32.18 5.25
93 94 2.005451 CACTCCAACATAGCAGCTGAC 58.995 52.381 20.43 9.11 0.00 3.51
123 124 1.160137 GTGAAGATTGGCTTGAGCGT 58.840 50.000 0.00 0.00 43.26 5.07
135 136 3.990469 CAGTAAAGACACAGCGTGAAGAT 59.010 43.478 14.18 2.77 36.96 2.40
160 161 4.159321 CAGGTCAGCGTATAGGATGATCAT 59.841 45.833 22.00 8.25 35.94 2.45
195 196 1.271871 TGGCATTATGATAAGCGGGGG 60.272 52.381 0.00 0.00 0.00 5.40
237 238 0.108615 ACATTCCGCTGAGTTCTCGG 60.109 55.000 4.45 4.45 44.16 4.63
238 239 1.714794 AACATTCCGCTGAGTTCTCG 58.285 50.000 0.00 0.00 0.00 4.04
239 240 3.619038 CCTTAACATTCCGCTGAGTTCTC 59.381 47.826 0.00 0.00 0.00 2.87
240 241 3.260884 TCCTTAACATTCCGCTGAGTTCT 59.739 43.478 0.00 0.00 0.00 3.01
241 242 3.371285 GTCCTTAACATTCCGCTGAGTTC 59.629 47.826 0.00 0.00 0.00 3.01
242 243 3.244422 TGTCCTTAACATTCCGCTGAGTT 60.244 43.478 0.00 0.00 31.20 3.01
243 244 2.301870 TGTCCTTAACATTCCGCTGAGT 59.698 45.455 0.00 0.00 31.20 3.41
244 245 2.972625 TGTCCTTAACATTCCGCTGAG 58.027 47.619 0.00 0.00 31.20 3.35
245 246 3.071479 GTTGTCCTTAACATTCCGCTGA 58.929 45.455 0.00 0.00 37.82 4.26
246 247 2.159707 CGTTGTCCTTAACATTCCGCTG 60.160 50.000 0.00 0.00 37.82 5.18
247 248 2.073816 CGTTGTCCTTAACATTCCGCT 58.926 47.619 0.00 0.00 37.82 5.52
248 249 1.802365 ACGTTGTCCTTAACATTCCGC 59.198 47.619 0.00 0.00 37.82 5.54
249 250 3.717350 GACGTTGTCCTTAACATTCCG 57.283 47.619 0.00 0.00 37.82 4.30
261 262 1.714794 CTCCTGATGTGGACGTTGTC 58.285 55.000 0.00 0.00 31.94 3.18
267 268 3.133721 ACTTGATAGCTCCTGATGTGGAC 59.866 47.826 0.00 0.00 31.94 4.02
293 294 1.443407 GATAGGCAGCGGCTTCAGA 59.557 57.895 9.17 0.00 39.70 3.27
296 297 2.281139 GGGATAGGCAGCGGCTTC 60.281 66.667 9.17 0.00 39.70 3.86
324 325 6.291377 TGTATCTGAACTAATTGATCCCAGC 58.709 40.000 0.00 0.00 0.00 4.85
325 326 7.935755 ACATGTATCTGAACTAATTGATCCCAG 59.064 37.037 0.00 0.00 0.00 4.45
360 365 1.141881 CAATCCGTCCGAGGTCTGG 59.858 63.158 0.00 0.00 0.00 3.86
373 378 3.010420 GACTACAAACTCAGGCCAATCC 58.990 50.000 5.01 0.00 0.00 3.01
457 462 0.528017 GGAAGTGCTTGCTTTAGGGC 59.472 55.000 0.00 0.00 0.00 5.19
503 508 2.831894 TAGGCTCGGCTCCGTCTCAA 62.832 60.000 8.28 0.00 40.74 3.02
515 520 2.961526 TGGAAGCTACTTTAGGCTCG 57.038 50.000 0.00 0.00 37.87 5.03
519 524 8.506168 TGTCATTTATTGGAAGCTACTTTAGG 57.494 34.615 0.00 0.00 0.00 2.69
521 526 9.515226 AACTGTCATTTATTGGAAGCTACTTTA 57.485 29.630 0.00 0.00 0.00 1.85
535 540 7.226720 CGAGCTATTACCCAAACTGTCATTTAT 59.773 37.037 0.00 0.00 0.00 1.40
569 574 4.872691 CCAGATTCACTTAGTGCTCGAATT 59.127 41.667 7.61 0.00 32.98 2.17
614 619 1.895131 GGGACACTACTAACCCGTCAA 59.105 52.381 0.00 0.00 32.73 3.18
622 627 4.159135 GGATCGAACAAGGGACACTACTAA 59.841 45.833 0.00 0.00 0.00 2.24
629 634 0.902531 GAGGGATCGAACAAGGGACA 59.097 55.000 0.00 0.00 0.00 4.02
630 635 1.137282 GAGAGGGATCGAACAAGGGAC 59.863 57.143 0.00 0.00 0.00 4.46
631 636 1.007238 AGAGAGGGATCGAACAAGGGA 59.993 52.381 0.00 0.00 0.00 4.20
632 637 1.410882 GAGAGAGGGATCGAACAAGGG 59.589 57.143 0.00 0.00 0.00 3.95
633 638 1.066303 CGAGAGAGGGATCGAACAAGG 59.934 57.143 0.00 0.00 41.40 3.61
634 639 2.017782 TCGAGAGAGGGATCGAACAAG 58.982 52.381 0.00 0.00 44.36 3.16
635 640 2.124277 TCGAGAGAGGGATCGAACAA 57.876 50.000 0.00 0.00 44.36 2.83
636 641 3.875865 TCGAGAGAGGGATCGAACA 57.124 52.632 0.00 0.00 44.36 3.18
662 667 5.331876 ACACAGTGAAAAATCCCGAAAAA 57.668 34.783 7.81 0.00 0.00 1.94
663 668 4.993029 ACACAGTGAAAAATCCCGAAAA 57.007 36.364 7.81 0.00 0.00 2.29
664 669 4.677584 CAACACAGTGAAAAATCCCGAAA 58.322 39.130 7.81 0.00 0.00 3.46
665 670 3.490078 GCAACACAGTGAAAAATCCCGAA 60.490 43.478 7.81 0.00 0.00 4.30
666 671 2.034053 GCAACACAGTGAAAAATCCCGA 59.966 45.455 7.81 0.00 0.00 5.14
667 672 2.223688 TGCAACACAGTGAAAAATCCCG 60.224 45.455 7.81 0.00 0.00 5.14
668 673 3.451141 TGCAACACAGTGAAAAATCCC 57.549 42.857 7.81 0.00 0.00 3.85
669 674 7.656707 ATTATTGCAACACAGTGAAAAATCC 57.343 32.000 7.81 0.00 0.00 3.01
670 675 8.011106 CCAATTATTGCAACACAGTGAAAAATC 58.989 33.333 7.81 0.00 0.00 2.17
671 676 7.520292 GCCAATTATTGCAACACAGTGAAAAAT 60.520 33.333 7.81 4.44 0.00 1.82
672 677 6.238320 GCCAATTATTGCAACACAGTGAAAAA 60.238 34.615 7.81 0.00 0.00 1.94
673 678 5.236047 GCCAATTATTGCAACACAGTGAAAA 59.764 36.000 7.81 0.00 0.00 2.29
674 679 4.749099 GCCAATTATTGCAACACAGTGAAA 59.251 37.500 7.81 0.00 0.00 2.69
675 680 4.305769 GCCAATTATTGCAACACAGTGAA 58.694 39.130 7.81 0.00 0.00 3.18
676 681 3.305950 GGCCAATTATTGCAACACAGTGA 60.306 43.478 7.81 0.00 0.00 3.41
677 682 2.995258 GGCCAATTATTGCAACACAGTG 59.005 45.455 0.00 0.00 0.00 3.66
678 683 2.352617 CGGCCAATTATTGCAACACAGT 60.353 45.455 0.00 0.00 0.00 3.55
679 684 2.261345 CGGCCAATTATTGCAACACAG 58.739 47.619 0.00 0.00 0.00 3.66
680 685 1.067283 CCGGCCAATTATTGCAACACA 60.067 47.619 0.00 0.00 0.00 3.72
681 686 1.067213 ACCGGCCAATTATTGCAACAC 60.067 47.619 0.00 0.00 0.00 3.32
682 687 1.203523 GACCGGCCAATTATTGCAACA 59.796 47.619 0.00 0.00 0.00 3.33
683 688 1.470805 GGACCGGCCAATTATTGCAAC 60.471 52.381 0.00 0.00 36.34 4.17
684 689 0.820871 GGACCGGCCAATTATTGCAA 59.179 50.000 0.00 0.00 36.34 4.08
685 690 0.323816 TGGACCGGCCAATTATTGCA 60.324 50.000 14.27 0.00 45.87 4.08
686 691 2.499214 TGGACCGGCCAATTATTGC 58.501 52.632 14.27 0.00 45.87 3.56
696 701 4.459089 GACTCCAGCTGGACCGGC 62.459 72.222 32.00 21.57 39.78 6.13
697 702 4.135153 CGACTCCAGCTGGACCGG 62.135 72.222 32.00 23.58 39.78 5.28
698 703 4.135153 CCGACTCCAGCTGGACCG 62.135 72.222 32.00 31.47 39.78 4.79
699 704 3.775654 CCCGACTCCAGCTGGACC 61.776 72.222 32.00 23.11 39.78 4.46
700 705 4.459089 GCCCGACTCCAGCTGGAC 62.459 72.222 32.00 21.33 39.78 4.02
703 708 4.463879 CAGGCCCGACTCCAGCTG 62.464 72.222 6.78 6.78 0.00 4.24
705 710 4.767255 CACAGGCCCGACTCCAGC 62.767 72.222 0.00 0.00 0.00 4.85
706 711 4.767255 GCACAGGCCCGACTCCAG 62.767 72.222 0.00 0.00 0.00 3.86
733 738 2.574212 CTCGTTGCGGCGAATTGC 60.574 61.111 12.98 0.00 40.57 3.56
734 739 2.574212 GCTCGTTGCGGCGAATTG 60.574 61.111 12.98 0.00 40.57 2.32
743 748 4.285149 CTATGCGCCGCTCGTTGC 62.285 66.667 11.67 0.00 41.07 4.17
744 749 3.630148 CCTATGCGCCGCTCGTTG 61.630 66.667 11.67 0.00 41.07 4.10
745 750 4.891727 CCCTATGCGCCGCTCGTT 62.892 66.667 11.67 0.00 41.07 3.85
755 760 2.159653 CGAATATTCTTGCGCCCTATGC 60.160 50.000 13.45 0.00 0.00 3.14
756 761 2.416547 CCGAATATTCTTGCGCCCTATG 59.583 50.000 13.45 0.00 0.00 2.23
757 762 2.699954 CCGAATATTCTTGCGCCCTAT 58.300 47.619 13.45 0.00 0.00 2.57
758 763 1.876416 GCCGAATATTCTTGCGCCCTA 60.876 52.381 13.45 0.00 0.00 3.53
759 764 1.166531 GCCGAATATTCTTGCGCCCT 61.167 55.000 13.45 0.00 0.00 5.19
760 765 1.282875 GCCGAATATTCTTGCGCCC 59.717 57.895 13.45 0.00 0.00 6.13
761 766 0.593128 ATGCCGAATATTCTTGCGCC 59.407 50.000 13.45 0.00 0.00 6.53
762 767 1.722751 CGATGCCGAATATTCTTGCGC 60.723 52.381 13.45 0.00 38.22 6.09
860 865 4.727475 CCGAGAATTTTGGAAGCTTCTTC 58.273 43.478 25.05 19.11 31.06 2.87
873 878 0.678048 GTGAGCTGGGCCGAGAATTT 60.678 55.000 20.35 0.00 0.00 1.82
899 905 4.154347 GCCAGTGGCTCTCCTCGG 62.154 72.222 27.48 0.00 46.69 4.63
978 987 0.485988 CGGGGAGGGGATTAGGTAGA 59.514 60.000 0.00 0.00 0.00 2.59
1210 1219 2.250939 CGCAACAAACCTCCGCTGA 61.251 57.895 0.00 0.00 0.00 4.26
1215 1224 2.644992 CAGGCGCAACAAACCTCC 59.355 61.111 10.83 0.00 0.00 4.30
1232 1241 4.561105 TGGCAAAAACAAATACCGAATCC 58.439 39.130 0.00 0.00 0.00 3.01
1265 1274 4.206375 ACACACATGAAATTCCACTCACA 58.794 39.130 0.00 0.00 0.00 3.58
1267 1276 5.106197 GCATACACACATGAAATTCCACTCA 60.106 40.000 0.00 0.00 0.00 3.41
1292 1302 4.222145 AGGTCGTACTGTGGACACAAATAT 59.778 41.667 6.60 0.00 41.33 1.28
1294 1304 2.367567 AGGTCGTACTGTGGACACAAAT 59.632 45.455 6.60 0.85 41.33 2.32
1296 1306 1.067974 CAGGTCGTACTGTGGACACAA 59.932 52.381 6.60 0.00 41.33 3.33
1304 1314 2.989824 AGCGGCAGGTCGTACTGT 60.990 61.111 1.45 0.00 40.59 3.55
1412 1422 3.552604 GCTCGTGTAAGCAAATTGGAA 57.447 42.857 0.00 0.00 42.05 3.53
1527 1549 2.567985 AGTTACACCAAAAGGACACCG 58.432 47.619 0.00 0.00 0.00 4.94
1651 1673 1.673920 GTTTCCTTCACGGAGCACAAA 59.326 47.619 0.00 0.00 44.28 2.83
1850 1873 4.684484 ATGCATGTCAGAGCTAGATGAA 57.316 40.909 0.00 0.00 0.00 2.57
1852 1875 5.990386 ACTTAATGCATGTCAGAGCTAGATG 59.010 40.000 0.00 0.00 0.00 2.90
1853 1876 5.990386 CACTTAATGCATGTCAGAGCTAGAT 59.010 40.000 0.00 0.00 0.00 1.98
1897 1921 7.015226 TGACACAAACAGATGAACACTTAAG 57.985 36.000 0.00 0.00 0.00 1.85
1899 1923 6.993786 TTGACACAAACAGATGAACACTTA 57.006 33.333 0.00 0.00 0.00 2.24
1904 1928 7.538678 GGTATTCATTGACACAAACAGATGAAC 59.461 37.037 0.00 0.00 36.63 3.18
1934 1958 6.670464 TGGTACCAGTTACTGATATCCTGAAA 59.330 38.462 11.60 0.00 32.44 2.69
1942 1966 5.184479 GCCGATATGGTACCAGTTACTGATA 59.816 44.000 21.41 5.38 41.21 2.15
1946 1970 2.631545 GGCCGATATGGTACCAGTTACT 59.368 50.000 21.41 5.39 41.21 2.24
1947 1971 2.608752 CGGCCGATATGGTACCAGTTAC 60.609 54.545 24.07 10.40 41.21 2.50
1963 1988 4.514577 CTACTCAGCACCCGGCCG 62.515 72.222 21.04 21.04 46.50 6.13
1966 1991 0.469331 TATCCCTACTCAGCACCCGG 60.469 60.000 0.00 0.00 0.00 5.73
2013 2038 7.819415 CCGGATAGCTGATTAACTGATTTATCA 59.181 37.037 0.00 0.00 35.16 2.15
2014 2039 7.819900 ACCGGATAGCTGATTAACTGATTTATC 59.180 37.037 9.46 0.00 0.00 1.75
2043 2068 4.141597 TGGTGTTTCAGTTGATAGTGTGGA 60.142 41.667 0.00 0.00 0.00 4.02
2071 2096 2.159531 ACGCATTCATTGACACAATCCG 60.160 45.455 0.00 0.00 0.00 4.18
2091 2116 7.202526 TCAATTTTCACATGAAGAAGGAACAC 58.797 34.615 0.00 0.00 35.21 3.32
2097 2122 9.343103 CTCAGATTCAATTTTCACATGAAGAAG 57.657 33.333 0.00 0.00 36.59 2.85
2122 2147 1.135915 CTCTTATGCTCCAGACGTGCT 59.864 52.381 0.00 0.00 32.04 4.40
2129 2154 4.210120 GCAACGATAACTCTTATGCTCCAG 59.790 45.833 0.00 0.00 0.00 3.86
2157 2182 3.879912 ACAAAGCTCAGCATTGTGC 57.120 47.368 19.17 0.00 46.26 4.57
2165 2190 8.680903 ACATCCAAAAGATATAACAAAGCTCAG 58.319 33.333 0.00 0.00 32.37 3.35
2182 2208 7.459795 TTCTGTTGCATACATACATCCAAAA 57.540 32.000 0.00 0.00 35.85 2.44
2191 2217 6.667370 CGGCATAATTTCTGTTGCATACATA 58.333 36.000 0.00 0.00 35.85 2.29
2193 2219 4.733230 GCGGCATAATTTCTGTTGCATACA 60.733 41.667 0.00 0.00 36.82 2.29
2195 2221 3.547813 CGCGGCATAATTTCTGTTGCATA 60.548 43.478 0.00 0.00 36.82 3.14
2285 2311 7.552459 TGTAGTTAGTGAGCATATTTAGCACA 58.448 34.615 0.00 0.00 32.16 4.57
2308 2334 4.899457 TCACCCTACATTTATCCTCGATGT 59.101 41.667 0.00 0.00 37.70 3.06
2312 2338 5.018539 TGTTCACCCTACATTTATCCTCG 57.981 43.478 0.00 0.00 0.00 4.63
2319 2345 9.227777 GTTAACTCTTATGTTCACCCTACATTT 57.772 33.333 0.00 0.00 37.42 2.32
2328 2354 7.535258 CACTGCAATGTTAACTCTTATGTTCAC 59.465 37.037 7.22 0.00 0.00 3.18
2408 2444 3.812262 TCTCCTATTCACACATGGCATG 58.188 45.455 25.31 25.31 0.00 4.06
2476 2512 3.681593 GGCATATTTAGCCCGTGGAATA 58.318 45.455 0.00 0.00 46.50 1.75
2520 2556 4.037222 TGTTCATCCTCAATAGCCCTACA 58.963 43.478 0.00 0.00 0.00 2.74
2521 2557 4.689612 TGTTCATCCTCAATAGCCCTAC 57.310 45.455 0.00 0.00 0.00 3.18
2522 2558 6.787458 TCTTATGTTCATCCTCAATAGCCCTA 59.213 38.462 0.00 0.00 0.00 3.53
2523 2559 5.608437 TCTTATGTTCATCCTCAATAGCCCT 59.392 40.000 0.00 0.00 0.00 5.19
2524 2560 5.869579 TCTTATGTTCATCCTCAATAGCCC 58.130 41.667 0.00 0.00 0.00 5.19
2525 2561 6.529220 ACTCTTATGTTCATCCTCAATAGCC 58.471 40.000 0.00 0.00 0.00 3.93
2526 2562 9.547753 TTAACTCTTATGTTCATCCTCAATAGC 57.452 33.333 0.00 0.00 0.00 2.97
2529 2565 9.911788 ATGTTAACTCTTATGTTCATCCTCAAT 57.088 29.630 7.22 0.00 0.00 2.57
2530 2566 9.739276 AATGTTAACTCTTATGTTCATCCTCAA 57.261 29.630 7.22 0.00 0.00 3.02
2531 2567 9.166173 CAATGTTAACTCTTATGTTCATCCTCA 57.834 33.333 7.22 0.00 0.00 3.86
2532 2568 8.125448 GCAATGTTAACTCTTATGTTCATCCTC 58.875 37.037 7.22 0.00 0.00 3.71
2533 2569 7.611467 TGCAATGTTAACTCTTATGTTCATCCT 59.389 33.333 7.22 0.00 0.00 3.24
2534 2570 7.761409 TGCAATGTTAACTCTTATGTTCATCC 58.239 34.615 7.22 0.00 0.00 3.51
2535 2571 7.912250 CCTGCAATGTTAACTCTTATGTTCATC 59.088 37.037 7.22 0.00 0.00 2.92
2536 2572 7.148018 CCCTGCAATGTTAACTCTTATGTTCAT 60.148 37.037 7.22 0.00 0.00 2.57
2537 2573 6.150976 CCCTGCAATGTTAACTCTTATGTTCA 59.849 38.462 7.22 0.00 0.00 3.18
2538 2574 6.151144 ACCCTGCAATGTTAACTCTTATGTTC 59.849 38.462 7.22 0.00 0.00 3.18
2539 2575 6.010219 ACCCTGCAATGTTAACTCTTATGTT 58.990 36.000 7.22 0.00 0.00 2.71
2540 2576 5.570320 ACCCTGCAATGTTAACTCTTATGT 58.430 37.500 7.22 0.00 0.00 2.29
2561 2597 1.589716 AAAGCTCCAGCATTGCGACC 61.590 55.000 2.38 0.00 45.16 4.79
2563 2599 1.878070 CAAAGCTCCAGCATTGCGA 59.122 52.632 2.38 0.00 41.73 5.10
2564 2600 4.470876 CAAAGCTCCAGCATTGCG 57.529 55.556 2.38 0.00 41.73 4.85
2571 2607 7.630242 TCCAAAAGATATAACAAAGCTCCAG 57.370 36.000 0.00 0.00 0.00 3.86
2584 2620 9.923143 CATTGCATATGTTCATCCAAAAGATAT 57.077 29.630 4.29 0.00 32.37 1.63
2585 2621 8.916062 ACATTGCATATGTTCATCCAAAAGATA 58.084 29.630 4.29 0.00 32.37 1.98
2586 2622 7.788026 ACATTGCATATGTTCATCCAAAAGAT 58.212 30.769 4.29 0.00 34.66 2.40
2600 2636 8.705134 CACAAGGCATAATTTACATTGCATATG 58.295 33.333 0.00 0.00 36.82 1.78
2607 2643 5.574891 TCGCACAAGGCATAATTTACATT 57.425 34.783 0.00 0.00 45.17 2.71
2687 2723 1.279558 TGGGCATATGTAACACGTGGT 59.720 47.619 21.57 17.39 0.00 4.16
2698 2734 4.717877 TCAATGGAGTTAGTGGGCATATG 58.282 43.478 0.00 0.00 0.00 1.78
2728 2764 9.338622 ACAAGATAATAAATGTGTTAGCCCTAC 57.661 33.333 0.00 0.00 0.00 3.18
2748 2784 6.830838 CCTTTTAAGCAGAAGGGATACAAGAT 59.169 38.462 0.00 0.00 38.98 2.40
2773 2810 5.186409 TCTGGATATAGGTAATAACGGTGCC 59.814 44.000 0.00 0.00 0.00 5.01
2782 2819 6.497259 TCGCTCCTTTTCTGGATATAGGTAAT 59.503 38.462 0.00 0.00 35.30 1.89
2784 2821 5.243283 GTCGCTCCTTTTCTGGATATAGGTA 59.757 44.000 0.00 0.00 35.30 3.08
2792 2829 0.321671 CCAGTCGCTCCTTTTCTGGA 59.678 55.000 3.76 0.00 45.76 3.86
2807 2844 2.469465 AATACTGCCTGCGCACCAGT 62.469 55.000 30.26 30.26 41.12 4.00
2890 2927 7.596995 CGCTCTTATATTTCTTTACAGAGGGAG 59.403 40.741 4.76 0.00 40.49 4.30
2893 2930 8.649973 AACGCTCTTATATTTCTTTACAGAGG 57.350 34.615 0.00 0.00 0.00 3.69
2910 2947 9.570488 CACTAAAGTAGTTATCTAAACGCTCTT 57.430 33.333 0.00 0.00 36.76 2.85
2911 2948 8.954350 TCACTAAAGTAGTTATCTAAACGCTCT 58.046 33.333 0.00 0.00 36.76 4.09
2912 2949 9.733219 ATCACTAAAGTAGTTATCTAAACGCTC 57.267 33.333 0.00 0.00 36.76 5.03
2913 2950 9.733219 GATCACTAAAGTAGTTATCTAAACGCT 57.267 33.333 3.42 0.00 36.79 5.07
2914 2951 9.733219 AGATCACTAAAGTAGTTATCTAAACGC 57.267 33.333 9.38 0.00 43.99 4.84
2920 2957 9.733219 GCGTTTAGATCACTAAAGTAGTTATCT 57.267 33.333 13.75 13.75 46.18 1.98
2921 2958 9.733219 AGCGTTTAGATCACTAAAGTAGTTATC 57.267 33.333 0.00 2.65 45.42 1.75
2922 2959 9.733219 GAGCGTTTAGATCACTAAAGTAGTTAT 57.267 33.333 0.00 0.00 45.42 1.89
2923 2960 8.954350 AGAGCGTTTAGATCACTAAAGTAGTTA 58.046 33.333 0.00 0.00 45.42 2.24
2924 2961 7.828712 AGAGCGTTTAGATCACTAAAGTAGTT 58.171 34.615 0.00 0.00 45.42 2.24
2925 2962 7.393841 AGAGCGTTTAGATCACTAAAGTAGT 57.606 36.000 0.00 0.00 45.42 2.73
2926 2963 9.224058 GTAAGAGCGTTTAGATCACTAAAGTAG 57.776 37.037 0.00 0.00 45.42 2.57
2927 2964 8.733458 TGTAAGAGCGTTTAGATCACTAAAGTA 58.267 33.333 0.00 0.00 45.42 2.24
2928 2965 7.600065 TGTAAGAGCGTTTAGATCACTAAAGT 58.400 34.615 0.00 0.00 45.42 2.66
2929 2966 8.635877 ATGTAAGAGCGTTTAGATCACTAAAG 57.364 34.615 0.00 0.00 45.42 1.85
2930 2967 8.997621 AATGTAAGAGCGTTTAGATCACTAAA 57.002 30.769 0.00 0.00 43.52 1.85
2931 2968 8.997621 AAATGTAAGAGCGTTTAGATCACTAA 57.002 30.769 0.00 0.00 37.82 2.24
2932 2969 8.467598 AGAAATGTAAGAGCGTTTAGATCACTA 58.532 33.333 0.00 0.00 37.82 2.74
2933 2970 7.324178 AGAAATGTAAGAGCGTTTAGATCACT 58.676 34.615 0.00 0.00 37.82 3.41
2934 2971 7.527084 AGAAATGTAAGAGCGTTTAGATCAC 57.473 36.000 0.00 0.00 37.82 3.06
2935 2972 8.547967 AAAGAAATGTAAGAGCGTTTAGATCA 57.452 30.769 0.00 0.00 37.82 2.92
2936 2973 9.903185 GTAAAGAAATGTAAGAGCGTTTAGATC 57.097 33.333 0.00 0.00 35.01 2.75
2937 2974 9.431887 TGTAAAGAAATGTAAGAGCGTTTAGAT 57.568 29.630 0.00 0.00 0.00 1.98
2938 2975 8.821147 TGTAAAGAAATGTAAGAGCGTTTAGA 57.179 30.769 0.00 0.00 0.00 2.10
2939 2976 8.922676 TCTGTAAAGAAATGTAAGAGCGTTTAG 58.077 33.333 0.00 0.00 0.00 1.85
2940 2977 8.821147 TCTGTAAAGAAATGTAAGAGCGTTTA 57.179 30.769 0.00 0.00 0.00 2.01
2941 2978 7.095187 CCTCTGTAAAGAAATGTAAGAGCGTTT 60.095 37.037 0.00 0.00 0.00 3.60
2942 2979 6.369065 CCTCTGTAAAGAAATGTAAGAGCGTT 59.631 38.462 0.00 0.00 0.00 4.84
2943 2980 5.869888 CCTCTGTAAAGAAATGTAAGAGCGT 59.130 40.000 0.00 0.00 0.00 5.07
2944 2981 5.292101 CCCTCTGTAAAGAAATGTAAGAGCG 59.708 44.000 0.00 0.00 0.00 5.03
2945 2982 6.407202 TCCCTCTGTAAAGAAATGTAAGAGC 58.593 40.000 0.00 0.00 0.00 4.09
2946 2983 7.616313 ACTCCCTCTGTAAAGAAATGTAAGAG 58.384 38.462 0.00 0.00 0.00 2.85
2947 2984 7.554959 ACTCCCTCTGTAAAGAAATGTAAGA 57.445 36.000 0.00 0.00 0.00 2.10
2948 2985 8.532819 ACTACTCCCTCTGTAAAGAAATGTAAG 58.467 37.037 0.00 0.00 0.00 2.34
2949 2986 8.431910 ACTACTCCCTCTGTAAAGAAATGTAA 57.568 34.615 0.00 0.00 0.00 2.41
2950 2987 8.431910 AACTACTCCCTCTGTAAAGAAATGTA 57.568 34.615 0.00 0.00 0.00 2.29
2951 2988 6.936968 ACTACTCCCTCTGTAAAGAAATGT 57.063 37.500 0.00 0.00 0.00 2.71
2952 2989 9.892130 AATAACTACTCCCTCTGTAAAGAAATG 57.108 33.333 0.00 0.00 0.00 2.32
2955 2992 9.765295 ACTAATAACTACTCCCTCTGTAAAGAA 57.235 33.333 0.00 0.00 0.00 2.52
2956 2993 9.406113 GACTAATAACTACTCCCTCTGTAAAGA 57.594 37.037 0.00 0.00 0.00 2.52
2957 2994 9.186837 TGACTAATAACTACTCCCTCTGTAAAG 57.813 37.037 0.00 0.00 0.00 1.85
2958 2995 8.964772 GTGACTAATAACTACTCCCTCTGTAAA 58.035 37.037 0.00 0.00 0.00 2.01
2959 2996 8.334734 AGTGACTAATAACTACTCCCTCTGTAA 58.665 37.037 0.00 0.00 0.00 2.41
2960 2997 7.774157 CAGTGACTAATAACTACTCCCTCTGTA 59.226 40.741 0.00 0.00 0.00 2.74
2961 2998 6.603997 CAGTGACTAATAACTACTCCCTCTGT 59.396 42.308 0.00 0.00 0.00 3.41
2962 2999 6.603997 ACAGTGACTAATAACTACTCCCTCTG 59.396 42.308 0.00 0.00 0.00 3.35
2963 3000 6.733509 ACAGTGACTAATAACTACTCCCTCT 58.266 40.000 0.00 0.00 0.00 3.69
2964 3001 8.517062 TTACAGTGACTAATAACTACTCCCTC 57.483 38.462 0.00 0.00 0.00 4.30
2965 3002 9.490083 AATTACAGTGACTAATAACTACTCCCT 57.510 33.333 0.00 0.00 0.00 4.20
3016 3053 6.808704 AGGTGACATCGATGAAATATATGTCG 59.191 38.462 31.33 0.47 44.93 4.35
3027 3064 6.321435 AGTGTCTTAATAGGTGACATCGATGA 59.679 38.462 31.33 7.62 41.78 2.92
3028 3065 6.507900 AGTGTCTTAATAGGTGACATCGATG 58.492 40.000 23.68 23.68 41.78 3.84
3035 3072 7.549488 AGCATTACAAGTGTCTTAATAGGTGAC 59.451 37.037 0.00 0.00 0.00 3.67
3043 3080 6.668323 GCAGAAAGCATTACAAGTGTCTTAA 58.332 36.000 0.00 0.00 44.79 1.85
3068 3108 1.614903 TGCAAGATGGGAAAACTGCAG 59.385 47.619 13.48 13.48 0.00 4.41
3130 3170 3.001330 CGTCAGAAACCAGCGGATATTTC 59.999 47.826 1.50 1.67 0.00 2.17
3133 3173 1.480954 ACGTCAGAAACCAGCGGATAT 59.519 47.619 1.50 0.00 0.00 1.63
3151 3191 5.180117 AGACTTTGAGATTGATTTGGTGACG 59.820 40.000 0.00 0.00 0.00 4.35
3233 3273 2.804986 TGAGCAGGCCATATGAAACA 57.195 45.000 5.01 0.00 0.00 2.83
3244 3284 2.068821 TCCAGGAGGATGAGCAGGC 61.069 63.158 0.00 0.00 39.61 4.85
3245 3285 4.388465 TCCAGGAGGATGAGCAGG 57.612 61.111 0.00 0.00 39.61 4.85
3254 3294 8.571336 CATACTAAAAGCAAAATATCCAGGAGG 58.429 37.037 0.00 0.00 0.00 4.30
3286 3327 2.929398 CACAACAAACAAGGAAAGGCAC 59.071 45.455 0.00 0.00 0.00 5.01
3287 3328 2.828520 TCACAACAAACAAGGAAAGGCA 59.171 40.909 0.00 0.00 0.00 4.75
3288 3329 3.518634 TCACAACAAACAAGGAAAGGC 57.481 42.857 0.00 0.00 0.00 4.35
3289 3330 5.009854 ACATCACAACAAACAAGGAAAGG 57.990 39.130 0.00 0.00 0.00 3.11
3290 3331 6.589523 TGAAACATCACAACAAACAAGGAAAG 59.410 34.615 0.00 0.00 0.00 2.62
3291 3332 6.459066 TGAAACATCACAACAAACAAGGAAA 58.541 32.000 0.00 0.00 0.00 3.13
3292 3333 6.030548 TGAAACATCACAACAAACAAGGAA 57.969 33.333 0.00 0.00 0.00 3.36
3293 3334 5.651387 TGAAACATCACAACAAACAAGGA 57.349 34.783 0.00 0.00 0.00 3.36
3314 3355 6.683974 AAAAATAACATCGAGACCCTCATG 57.316 37.500 0.00 0.00 0.00 3.07
3317 3358 6.110707 TGGTAAAAATAACATCGAGACCCTC 58.889 40.000 0.00 0.00 0.00 4.30
3321 3362 6.110707 TCCCTGGTAAAAATAACATCGAGAC 58.889 40.000 0.00 0.00 0.00 3.36
3325 3366 6.475402 GCAATTCCCTGGTAAAAATAACATCG 59.525 38.462 0.00 0.00 0.00 3.84
3328 3369 6.723977 AGAGCAATTCCCTGGTAAAAATAACA 59.276 34.615 0.00 0.00 0.00 2.41
3332 3373 5.332743 TCAGAGCAATTCCCTGGTAAAAAT 58.667 37.500 0.00 0.00 0.00 1.82
3426 3469 4.047627 TCTCAAGGTCTCATCCACACTA 57.952 45.455 0.00 0.00 0.00 2.74
3474 3517 3.542712 AACTGCACGCTAAGATGTTTG 57.457 42.857 0.00 0.00 0.00 2.93
3478 3521 4.346734 AATGAAACTGCACGCTAAGATG 57.653 40.909 0.00 0.00 0.00 2.90
3480 3523 7.786178 AATATAATGAAACTGCACGCTAAGA 57.214 32.000 0.00 0.00 0.00 2.10
3482 3525 8.208718 AGAAATATAATGAAACTGCACGCTAA 57.791 30.769 0.00 0.00 0.00 3.09
3483 3526 7.786178 AGAAATATAATGAAACTGCACGCTA 57.214 32.000 0.00 0.00 0.00 4.26
3484 3527 6.683974 AGAAATATAATGAAACTGCACGCT 57.316 33.333 0.00 0.00 0.00 5.07
3485 3528 7.740519 AAAGAAATATAATGAAACTGCACGC 57.259 32.000 0.00 0.00 0.00 5.34
3532 3583 6.860080 ACAGAAATTGCATGAATCCTAACAG 58.140 36.000 0.00 0.00 0.00 3.16
3533 3584 6.839124 ACAGAAATTGCATGAATCCTAACA 57.161 33.333 0.00 0.00 0.00 2.41
3605 3703 6.053005 TGCATTATAGCTAACAACAGGTACC 58.947 40.000 2.73 2.73 31.70 3.34
3744 3957 0.411848 TTTCCCCAGGTTTCCATCCC 59.588 55.000 0.00 0.00 0.00 3.85
3783 3996 0.326264 AGTACTCCTTGCTGCCCTTG 59.674 55.000 0.00 0.00 0.00 3.61
3810 4023 6.630413 GCAAAGGACAAGGACACATCTAGATA 60.630 42.308 4.54 0.00 0.00 1.98
3820 4033 1.810031 CGAGTGCAAAGGACAAGGACA 60.810 52.381 0.00 0.00 0.00 4.02
3821 4034 0.868406 CGAGTGCAAAGGACAAGGAC 59.132 55.000 0.00 0.00 0.00 3.85
3822 4035 0.884704 GCGAGTGCAAAGGACAAGGA 60.885 55.000 0.00 0.00 42.15 3.36
3823 4036 0.886490 AGCGAGTGCAAAGGACAAGG 60.886 55.000 0.00 0.00 46.23 3.61
3824 4037 0.236711 CAGCGAGTGCAAAGGACAAG 59.763 55.000 0.00 0.00 46.23 3.16
3825 4038 0.463654 ACAGCGAGTGCAAAGGACAA 60.464 50.000 0.00 0.00 46.23 3.18
3826 4039 0.880278 GACAGCGAGTGCAAAGGACA 60.880 55.000 0.00 0.00 46.23 4.02
3867 4081 4.142138 GGGTCACAAAAACACATGTAACCA 60.142 41.667 0.00 0.00 39.26 3.67
3932 4146 3.317993 ACACACAGACAAACCCTTATTGC 59.682 43.478 0.00 0.00 0.00 3.56
3959 4173 2.692709 TCCAAATTGGAGCAGGGAAA 57.307 45.000 11.23 0.00 42.67 3.13
4053 4267 9.146984 AGCTTCACATCATCAAAATTTGTAATG 57.853 29.630 5.56 9.92 0.00 1.90
4127 4344 9.871238 CACCACTAAGAGTACTAACATTAACAT 57.129 33.333 0.00 0.00 0.00 2.71
4129 4346 8.526147 TCCACCACTAAGAGTACTAACATTAAC 58.474 37.037 0.00 0.00 0.00 2.01
4130 4347 8.526147 GTCCACCACTAAGAGTACTAACATTAA 58.474 37.037 0.00 0.00 0.00 1.40
4131 4348 7.670979 TGTCCACCACTAAGAGTACTAACATTA 59.329 37.037 0.00 0.00 0.00 1.90
4133 4350 6.014647 TGTCCACCACTAAGAGTACTAACAT 58.985 40.000 0.00 0.00 0.00 2.71
4138 4355 3.195825 GCATGTCCACCACTAAGAGTACT 59.804 47.826 0.00 0.00 0.00 2.73
4139 4356 3.195825 AGCATGTCCACCACTAAGAGTAC 59.804 47.826 0.00 0.00 0.00 2.73
4140 4357 3.441101 AGCATGTCCACCACTAAGAGTA 58.559 45.455 0.00 0.00 0.00 2.59
4141 4358 2.234908 GAGCATGTCCACCACTAAGAGT 59.765 50.000 0.00 0.00 0.00 3.24
4199 4511 2.203167 CATCAGGCATGCTCGGCT 60.203 61.111 18.92 2.59 43.72 5.52
4203 4515 0.822532 CCTTCCCATCAGGCATGCTC 60.823 60.000 18.92 7.89 34.51 4.26
4208 4520 0.913934 TAGCACCTTCCCATCAGGCA 60.914 55.000 0.00 0.00 34.32 4.75
4225 4537 5.404946 CAAGTCATTTGGGCTGAATGTTAG 58.595 41.667 11.25 0.00 36.23 2.34
4248 4560 1.373570 GGGCATGACACTTACAGAGC 58.626 55.000 0.00 0.00 0.00 4.09
4252 4564 1.985159 AGAAGGGGCATGACACTTACA 59.015 47.619 18.28 0.00 0.00 2.41
4259 4571 2.171448 ACACAGATAGAAGGGGCATGAC 59.829 50.000 0.00 0.00 0.00 3.06
4272 4584 3.599343 AGCTTTGCGATGAACACAGATA 58.401 40.909 0.00 0.00 0.00 1.98
4279 4591 2.095919 ACCGTTTAGCTTTGCGATGAAC 60.096 45.455 0.00 0.00 0.00 3.18
4281 4593 1.463056 CACCGTTTAGCTTTGCGATGA 59.537 47.619 0.00 0.00 0.00 2.92
4354 4666 3.706698 CATGTCCACCACTATGAGTACG 58.293 50.000 0.00 0.00 0.00 3.67
4412 4728 0.255890 GCACCTTCCCATCAGGCTTA 59.744 55.000 0.00 0.00 34.32 3.09
4441 4757 3.521947 AGTAATTCCGAACGAAGGGAG 57.478 47.619 0.00 0.00 32.78 4.30
4442 4758 3.007182 ACAAGTAATTCCGAACGAAGGGA 59.993 43.478 0.00 0.00 32.78 4.20
4445 4761 4.030306 CGAGACAAGTAATTCCGAACGAAG 59.970 45.833 0.00 0.00 32.78 3.79
4446 4762 3.916172 CGAGACAAGTAATTCCGAACGAA 59.084 43.478 0.00 0.00 34.14 3.85
4447 4763 3.495193 CGAGACAAGTAATTCCGAACGA 58.505 45.455 0.00 0.00 0.00 3.85
4448 4764 2.597305 CCGAGACAAGTAATTCCGAACG 59.403 50.000 0.00 0.00 0.00 3.95
4449 4765 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
4450 4766 4.524316 TTCCGAGACAAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
4451 4767 4.524316 TTTCCGAGACAAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
4452 4768 4.034048 CCATTTCCGAGACAAGTAATTCCG 59.966 45.833 0.00 0.00 0.00 4.30
4453 4769 5.183228 TCCATTTCCGAGACAAGTAATTCC 58.817 41.667 0.00 0.00 0.00 3.01
4455 4771 6.180472 ACATCCATTTCCGAGACAAGTAATT 58.820 36.000 0.00 0.00 0.00 1.40
4456 4772 5.745227 ACATCCATTTCCGAGACAAGTAAT 58.255 37.500 0.00 0.00 0.00 1.89
4457 4773 5.160607 ACATCCATTTCCGAGACAAGTAA 57.839 39.130 0.00 0.00 0.00 2.24
4460 4776 5.605534 AGATACATCCATTTCCGAGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
4461 4777 5.614324 AGATACATCCATTTCCGAGACAA 57.386 39.130 0.00 0.00 0.00 3.18
4462 4778 6.068670 TCTAGATACATCCATTTCCGAGACA 58.931 40.000 0.00 0.00 0.00 3.41
4463 4779 6.576662 TCTAGATACATCCATTTCCGAGAC 57.423 41.667 0.00 0.00 0.00 3.36
4464 4780 6.778069 AGTTCTAGATACATCCATTTCCGAGA 59.222 38.462 0.00 0.00 0.00 4.04
4465 4781 6.987386 AGTTCTAGATACATCCATTTCCGAG 58.013 40.000 0.00 0.00 0.00 4.63
4466 4782 6.978674 AGTTCTAGATACATCCATTTCCGA 57.021 37.500 0.00 0.00 0.00 4.55
4467 4783 9.542462 TTTTAGTTCTAGATACATCCATTTCCG 57.458 33.333 0.00 0.00 0.00 4.30
4491 4807 9.193133 CGAAAATGGATGTATCTAGACGTATTT 57.807 33.333 0.00 0.00 0.00 1.40
4492 4808 7.328737 GCGAAAATGGATGTATCTAGACGTATT 59.671 37.037 0.00 0.00 0.00 1.89
4493 4809 6.807230 GCGAAAATGGATGTATCTAGACGTAT 59.193 38.462 0.00 0.00 0.00 3.06
4494 4810 6.147581 GCGAAAATGGATGTATCTAGACGTA 58.852 40.000 0.00 0.00 0.00 3.57
4495 4811 4.982916 GCGAAAATGGATGTATCTAGACGT 59.017 41.667 0.00 0.00 0.00 4.34
4496 4812 4.088638 CGCGAAAATGGATGTATCTAGACG 59.911 45.833 0.00 0.00 0.00 4.18
4497 4813 5.117287 GTCGCGAAAATGGATGTATCTAGAC 59.883 44.000 12.06 0.00 0.00 2.59
4498 4814 5.220381 GTCGCGAAAATGGATGTATCTAGA 58.780 41.667 12.06 0.00 0.00 2.43
4499 4815 4.088638 CGTCGCGAAAATGGATGTATCTAG 59.911 45.833 12.06 0.00 0.00 2.43
4500 4816 3.978855 CGTCGCGAAAATGGATGTATCTA 59.021 43.478 12.06 0.00 0.00 1.98
4501 4817 2.794910 CGTCGCGAAAATGGATGTATCT 59.205 45.455 12.06 0.00 0.00 1.98
4502 4818 2.792674 TCGTCGCGAAAATGGATGTATC 59.207 45.455 12.06 0.00 31.06 2.24
4503 4819 2.794910 CTCGTCGCGAAAATGGATGTAT 59.205 45.455 12.06 0.00 34.74 2.29
4504 4820 2.190161 CTCGTCGCGAAAATGGATGTA 58.810 47.619 12.06 0.00 34.74 2.29
4505 4821 0.999406 CTCGTCGCGAAAATGGATGT 59.001 50.000 12.06 0.00 34.74 3.06
4506 4822 0.999406 ACTCGTCGCGAAAATGGATG 59.001 50.000 12.06 0.00 34.74 3.51
4507 4823 2.572191 TACTCGTCGCGAAAATGGAT 57.428 45.000 12.06 0.00 34.74 3.41
4508 4824 2.350899 TTACTCGTCGCGAAAATGGA 57.649 45.000 12.06 2.49 34.74 3.41
4509 4825 3.543460 GGAATTACTCGTCGCGAAAATGG 60.543 47.826 12.06 2.10 34.74 3.16
4510 4826 3.594312 GGAATTACTCGTCGCGAAAATG 58.406 45.455 12.06 4.08 34.74 2.32
4511 4827 2.280708 CGGAATTACTCGTCGCGAAAAT 59.719 45.455 12.06 3.17 34.74 1.82
4512 4828 1.650153 CGGAATTACTCGTCGCGAAAA 59.350 47.619 12.06 0.00 34.74 2.29
4513 4829 1.135717 TCGGAATTACTCGTCGCGAAA 60.136 47.619 12.06 0.17 34.74 3.46
4514 4830 0.447406 TCGGAATTACTCGTCGCGAA 59.553 50.000 12.06 0.00 34.74 4.70
4515 4831 0.447406 TTCGGAATTACTCGTCGCGA 59.553 50.000 3.71 3.71 0.00 5.87
4516 4832 0.564767 GTTCGGAATTACTCGTCGCG 59.435 55.000 0.00 0.00 0.00 5.87
4517 4833 1.582502 CTGTTCGGAATTACTCGTCGC 59.417 52.381 0.00 0.00 0.00 5.19
4518 4834 3.099362 CTCTGTTCGGAATTACTCGTCG 58.901 50.000 0.00 0.00 0.00 5.12
4519 4835 3.436496 CCTCTGTTCGGAATTACTCGTC 58.564 50.000 0.00 0.00 0.00 4.20
4520 4836 2.165845 CCCTCTGTTCGGAATTACTCGT 59.834 50.000 0.00 0.00 0.00 4.18
4521 4837 2.426024 TCCCTCTGTTCGGAATTACTCG 59.574 50.000 0.00 0.00 0.00 4.18
4522 4838 3.447944 ACTCCCTCTGTTCGGAATTACTC 59.552 47.826 0.00 0.00 0.00 2.59
4523 4839 3.442076 ACTCCCTCTGTTCGGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
4524 4840 3.889520 ACTCCCTCTGTTCGGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
4525 4841 4.607239 ACTACTCCCTCTGTTCGGAATTA 58.393 43.478 0.00 0.00 0.00 1.40
4526 4842 3.442076 ACTACTCCCTCTGTTCGGAATT 58.558 45.455 0.00 0.00 0.00 2.17
4527 4843 3.103080 ACTACTCCCTCTGTTCGGAAT 57.897 47.619 0.00 0.00 0.00 3.01
4528 4844 2.599408 ACTACTCCCTCTGTTCGGAA 57.401 50.000 0.00 0.00 0.00 4.30
4529 4845 3.201487 TGATACTACTCCCTCTGTTCGGA 59.799 47.826 0.00 0.00 0.00 4.55
4530 4846 3.552875 TGATACTACTCCCTCTGTTCGG 58.447 50.000 0.00 0.00 0.00 4.30
4531 4847 4.557695 GCATGATACTACTCCCTCTGTTCG 60.558 50.000 0.00 0.00 0.00 3.95
4532 4848 4.262249 GGCATGATACTACTCCCTCTGTTC 60.262 50.000 0.00 0.00 0.00 3.18
4533 4849 3.643792 GGCATGATACTACTCCCTCTGTT 59.356 47.826 0.00 0.00 0.00 3.16
4534 4850 3.116939 AGGCATGATACTACTCCCTCTGT 60.117 47.826 0.00 0.00 0.00 3.41
4535 4851 3.505386 AGGCATGATACTACTCCCTCTG 58.495 50.000 0.00 0.00 0.00 3.35
4536 4852 3.401002 AGAGGCATGATACTACTCCCTCT 59.599 47.826 0.00 1.59 42.00 3.69
4537 4853 3.773560 AGAGGCATGATACTACTCCCTC 58.226 50.000 0.00 0.00 38.08 4.30
4538 4854 3.913370 AGAGGCATGATACTACTCCCT 57.087 47.619 0.00 0.00 0.00 4.20
4539 4855 4.965200 AAAGAGGCATGATACTACTCCC 57.035 45.455 0.00 0.00 0.00 4.30
4540 4856 7.816995 CAGATAAAAGAGGCATGATACTACTCC 59.183 40.741 0.00 0.00 0.00 3.85
4541 4857 8.364142 ACAGATAAAAGAGGCATGATACTACTC 58.636 37.037 0.00 0.00 0.00 2.59
4542 4858 8.256356 ACAGATAAAAGAGGCATGATACTACT 57.744 34.615 0.00 0.00 0.00 2.57
4543 4859 8.894768 AACAGATAAAAGAGGCATGATACTAC 57.105 34.615 0.00 0.00 0.00 2.73
4544 4860 9.547753 GAAACAGATAAAAGAGGCATGATACTA 57.452 33.333 0.00 0.00 0.00 1.82
4589 4937 6.238049 CGCAAGAGAACCAAGAAGATTCATAG 60.238 42.308 0.00 0.00 43.02 2.23
4649 5005 4.090642 GCATATAAGAACGAGCTTGATCGG 59.909 45.833 8.31 0.00 46.91 4.18
4694 5050 1.144093 TCCTTCTTTTTGCCCGAGGAA 59.856 47.619 0.00 0.00 0.00 3.36
4695 5051 0.768622 TCCTTCTTTTTGCCCGAGGA 59.231 50.000 0.00 0.00 0.00 3.71
4881 6367 3.706698 TCACTCTTGAGACAAGAACACG 58.293 45.455 13.78 6.37 0.00 4.49
4901 6387 8.368668 AGGCTGTATTACACTATTACCTGATTC 58.631 37.037 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.