Multiple sequence alignment - TraesCS2B01G313600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G313600 chr2B 100.000 6245 0 0 1 6245 448879889 448873645 0.000000e+00 11533.0
1 TraesCS2B01G313600 chr2B 93.678 174 6 2 1 170 749622330 749622502 8.030000e-64 255.0
2 TraesCS2B01G313600 chr2B 80.078 256 29 5 5847 6086 13814050 13813801 2.990000e-38 171.0
3 TraesCS2B01G313600 chr2D 95.129 5933 182 39 291 6181 377163918 377158051 0.000000e+00 9256.0
4 TraesCS2B01G313600 chr2D 93.605 172 7 1 1 168 275249990 275249819 2.890000e-63 254.0
5 TraesCS2B01G313600 chr2D 100.000 38 0 0 6208 6245 377158050 377158013 3.120000e-08 71.3
6 TraesCS2B01G313600 chr2A 95.291 5713 188 35 512 6188 511122176 511116509 0.000000e+00 8985.0
7 TraesCS2B01G313600 chr2A 90.909 121 8 2 1962 2082 767958563 767958680 6.480000e-35 159.0
8 TraesCS2B01G313600 chr2A 100.000 38 0 0 6208 6245 511116508 511116471 3.120000e-08 71.3
9 TraesCS2B01G313600 chr2A 97.143 35 1 0 2114 2148 767958688 767958722 6.760000e-05 60.2
10 TraesCS2B01G313600 chr3B 96.736 919 27 2 3301 4219 1272376 1271461 0.000000e+00 1528.0
11 TraesCS2B01G313600 chr3B 83.929 56 9 0 217 272 707894355 707894300 3.000000e-03 54.7
12 TraesCS2B01G313600 chr5B 92.818 181 8 2 1 177 308237428 308237249 2.230000e-64 257.0
13 TraesCS2B01G313600 chr5B 93.642 173 6 2 1 169 114421541 114421712 2.890000e-63 254.0
14 TraesCS2B01G313600 chr5B 93.143 175 7 2 1 171 34581470 34581643 1.040000e-62 252.0
15 TraesCS2B01G313600 chr5B 92.697 178 8 2 1 174 503524254 503524430 1.040000e-62 252.0
16 TraesCS2B01G313600 chr5B 93.064 173 7 2 1 169 222031573 222031744 1.340000e-61 248.0
17 TraesCS2B01G313600 chr1D 93.642 173 6 2 1 169 203012626 203012455 2.890000e-63 254.0
18 TraesCS2B01G313600 chr1D 76.125 289 53 11 216 499 104575966 104575689 3.040000e-28 137.0
19 TraesCS2B01G313600 chr1D 78.808 151 30 2 351 501 354466286 354466434 3.980000e-17 100.0
20 TraesCS2B01G313600 chr6B 93.143 175 7 2 1 171 710127375 710127202 1.040000e-62 252.0
21 TraesCS2B01G313600 chr1B 84.667 150 21 2 351 499 161987934 161988082 1.400000e-31 148.0
22 TraesCS2B01G313600 chr7B 80.000 165 32 1 338 501 463234733 463234897 3.060000e-23 121.0
23 TraesCS2B01G313600 chr7B 82.558 86 10 3 338 422 732295138 732295219 3.120000e-08 71.3
24 TraesCS2B01G313600 chr7B 82.558 86 10 3 338 422 732328557 732328638 3.120000e-08 71.3
25 TraesCS2B01G313600 chr6D 82.051 117 20 1 361 476 316112826 316112710 1.430000e-16 99.0
26 TraesCS2B01G313600 chr6D 91.667 60 5 0 401 460 455522728 455522787 4.010000e-12 84.2
27 TraesCS2B01G313600 chr5D 78.873 142 28 2 322 462 406820461 406820321 1.850000e-15 95.3
28 TraesCS2B01G313600 chr4A 82.955 88 13 1 185 272 598677460 598677545 1.870000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G313600 chr2B 448873645 448879889 6244 True 11533.00 11533 100.0000 1 6245 1 chr2B.!!$R2 6244
1 TraesCS2B01G313600 chr2D 377158013 377163918 5905 True 4663.65 9256 97.5645 291 6245 2 chr2D.!!$R2 5954
2 TraesCS2B01G313600 chr2A 511116471 511122176 5705 True 4528.15 8985 97.6455 512 6245 2 chr2A.!!$R1 5733
3 TraesCS2B01G313600 chr3B 1271461 1272376 915 True 1528.00 1528 96.7360 3301 4219 1 chr3B.!!$R1 918

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
248 249 0.037160 TAGGGTTTGGTCCGGAAAGC 59.963 55.000 5.23 6.9 0.00 3.51 F
286 287 0.106149 GTGGGTAGGGTAGATTGGCG 59.894 60.000 0.00 0.0 0.00 5.69 F
1560 1579 0.116342 GAGATTTGGGGTTTGGGGGT 59.884 55.000 0.00 0.0 0.00 4.95 F
1657 1676 0.391263 CTTGTCGGCTTGGGAGGTAC 60.391 60.000 0.00 0.0 0.00 3.34 F
2238 2261 0.905357 ACCTGACACTGGTGCTATCC 59.095 55.000 0.17 0.0 34.44 2.59 F
2591 2615 2.047061 GCAGTCCACATATGACCCCTA 58.953 52.381 10.38 0.0 33.09 3.53 F
3576 3608 2.956333 AGCCTTTTGTGTAACCTTGTCC 59.044 45.455 0.00 0.0 34.36 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1609 1628 0.254178 TCAAGCAGCTGGGAAGGATC 59.746 55.000 17.12 0.0 0.00 3.36 R
2273 2296 0.527565 AAATGGACAGCAATCCGCAC 59.472 50.000 2.15 0.0 46.13 5.34 R
3372 3402 0.721154 CGAGCTTAGCATTTCGCACA 59.279 50.000 7.07 0.0 46.13 4.57 R
3576 3608 4.739046 AGATTTTCAAGTTCTGTCTGCG 57.261 40.909 0.00 0.0 0.00 5.18 R
4047 4084 4.201724 GCAGAACGACAAAGACCATATGAC 60.202 45.833 3.65 0.0 0.00 3.06 R
4322 4375 7.804843 AATGAATATGCCTCAAAGAGAAGAG 57.195 36.000 0.00 0.0 0.00 2.85 R
5473 5537 0.179100 GCTCAAGCGGCAGACTGATA 60.179 55.000 6.65 0.0 0.00 2.15 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.841957 ATTCCTTGAATAGCACATTGGTC 57.158 39.130 0.00 0.00 29.72 4.02
25 26 4.299586 TCCTTGAATAGCACATTGGTCA 57.700 40.909 0.00 0.00 0.00 4.02
26 27 4.858850 TCCTTGAATAGCACATTGGTCAT 58.141 39.130 0.00 0.00 0.00 3.06
27 28 4.883585 TCCTTGAATAGCACATTGGTCATC 59.116 41.667 0.00 0.00 0.00 2.92
28 29 4.641541 CCTTGAATAGCACATTGGTCATCA 59.358 41.667 0.00 0.00 0.00 3.07
29 30 5.449588 CCTTGAATAGCACATTGGTCATCAC 60.450 44.000 0.00 0.00 0.00 3.06
30 31 4.587891 TGAATAGCACATTGGTCATCACA 58.412 39.130 0.00 0.00 0.00 3.58
31 32 5.195185 TGAATAGCACATTGGTCATCACAT 58.805 37.500 0.00 0.00 0.00 3.21
32 33 6.355747 TGAATAGCACATTGGTCATCACATA 58.644 36.000 0.00 0.00 0.00 2.29
33 34 6.827762 TGAATAGCACATTGGTCATCACATAA 59.172 34.615 0.00 0.00 0.00 1.90
34 35 7.338957 TGAATAGCACATTGGTCATCACATAAA 59.661 33.333 0.00 0.00 0.00 1.40
35 36 5.314923 AGCACATTGGTCATCACATAAAC 57.685 39.130 0.00 0.00 0.00 2.01
36 37 5.012239 AGCACATTGGTCATCACATAAACT 58.988 37.500 0.00 0.00 0.00 2.66
37 38 5.124457 AGCACATTGGTCATCACATAAACTC 59.876 40.000 0.00 0.00 0.00 3.01
38 39 5.677091 GCACATTGGTCATCACATAAACTCC 60.677 44.000 0.00 0.00 0.00 3.85
39 40 5.649395 CACATTGGTCATCACATAAACTCCT 59.351 40.000 0.00 0.00 0.00 3.69
40 41 6.151648 CACATTGGTCATCACATAAACTCCTT 59.848 38.462 0.00 0.00 0.00 3.36
41 42 6.151648 ACATTGGTCATCACATAAACTCCTTG 59.848 38.462 0.00 0.00 0.00 3.61
42 43 5.497464 TGGTCATCACATAAACTCCTTGA 57.503 39.130 0.00 0.00 0.00 3.02
43 44 5.875224 TGGTCATCACATAAACTCCTTGAA 58.125 37.500 0.00 0.00 0.00 2.69
44 45 6.303054 TGGTCATCACATAAACTCCTTGAAA 58.697 36.000 0.00 0.00 0.00 2.69
45 46 6.206634 TGGTCATCACATAAACTCCTTGAAAC 59.793 38.462 0.00 0.00 0.00 2.78
46 47 6.349363 GGTCATCACATAAACTCCTTGAAACC 60.349 42.308 0.00 0.00 0.00 3.27
47 48 6.206634 GTCATCACATAAACTCCTTGAAACCA 59.793 38.462 0.00 0.00 0.00 3.67
48 49 6.775142 TCATCACATAAACTCCTTGAAACCAA 59.225 34.615 0.00 0.00 0.00 3.67
49 50 6.385649 TCACATAAACTCCTTGAAACCAAC 57.614 37.500 0.00 0.00 0.00 3.77
50 51 5.888724 TCACATAAACTCCTTGAAACCAACA 59.111 36.000 0.00 0.00 0.00 3.33
51 52 6.549364 TCACATAAACTCCTTGAAACCAACAT 59.451 34.615 0.00 0.00 0.00 2.71
52 53 7.721842 TCACATAAACTCCTTGAAACCAACATA 59.278 33.333 0.00 0.00 0.00 2.29
53 54 8.522830 CACATAAACTCCTTGAAACCAACATAT 58.477 33.333 0.00 0.00 0.00 1.78
54 55 8.522830 ACATAAACTCCTTGAAACCAACATATG 58.477 33.333 0.00 0.00 0.00 1.78
74 75 9.645128 ACATATGGATTTCAAGAAATATGGACA 57.355 29.630 7.80 4.19 40.77 4.02
79 80 8.477256 TGGATTTCAAGAAATATGGACAAATCC 58.523 33.333 7.94 11.52 44.35 3.01
80 81 8.699130 GGATTTCAAGAAATATGGACAAATCCT 58.301 33.333 7.94 0.00 42.09 3.24
83 84 8.648698 TTCAAGAAATATGGACAAATCCTTCA 57.351 30.769 0.00 0.00 46.43 3.02
84 85 8.648698 TCAAGAAATATGGACAAATCCTTCAA 57.351 30.769 0.00 0.00 46.43 2.69
85 86 9.087871 TCAAGAAATATGGACAAATCCTTCAAA 57.912 29.630 0.00 0.00 46.43 2.69
86 87 9.880157 CAAGAAATATGGACAAATCCTTCAAAT 57.120 29.630 0.00 0.00 46.43 2.32
94 95 9.699410 ATGGACAAATCCTTCAAATATAACTCA 57.301 29.630 0.00 0.00 46.43 3.41
95 96 9.527157 TGGACAAATCCTTCAAATATAACTCAA 57.473 29.630 0.00 0.00 46.43 3.02
102 103 9.965902 ATCCTTCAAATATAACTCAAGACAACT 57.034 29.630 0.00 0.00 0.00 3.16
115 116 8.824756 ACTCAAGACAACTATTAGTCCATAGA 57.175 34.615 0.00 0.00 35.38 1.98
116 117 8.908903 ACTCAAGACAACTATTAGTCCATAGAG 58.091 37.037 0.00 4.28 35.38 2.43
117 118 9.126151 CTCAAGACAACTATTAGTCCATAGAGA 57.874 37.037 0.00 0.00 35.38 3.10
118 119 9.647918 TCAAGACAACTATTAGTCCATAGAGAT 57.352 33.333 0.00 0.00 35.38 2.75
121 122 9.427821 AGACAACTATTAGTCCATAGAGATTGT 57.572 33.333 0.00 0.00 35.38 2.71
122 123 9.685828 GACAACTATTAGTCCATAGAGATTGTC 57.314 37.037 0.00 0.00 35.40 3.18
123 124 9.201989 ACAACTATTAGTCCATAGAGATTGTCA 57.798 33.333 0.00 0.00 31.92 3.58
126 127 9.593565 ACTATTAGTCCATAGAGATTGTCATCA 57.406 33.333 0.00 0.00 31.92 3.07
132 133 8.153550 AGTCCATAGAGATTGTCATCAATTACC 58.846 37.037 0.00 0.00 43.33 2.85
133 134 7.933577 GTCCATAGAGATTGTCATCAATTACCA 59.066 37.037 0.00 0.00 43.33 3.25
134 135 8.493607 TCCATAGAGATTGTCATCAATTACCAA 58.506 33.333 0.00 0.00 43.33 3.67
135 136 9.123902 CCATAGAGATTGTCATCAATTACCAAA 57.876 33.333 0.00 0.00 43.33 3.28
138 139 7.830739 AGAGATTGTCATCAATTACCAAAACC 58.169 34.615 0.00 0.00 43.33 3.27
139 140 7.451255 AGAGATTGTCATCAATTACCAAAACCA 59.549 33.333 0.00 0.00 43.33 3.67
140 141 7.961351 AGATTGTCATCAATTACCAAAACCAA 58.039 30.769 0.00 0.00 43.33 3.67
141 142 8.428063 AGATTGTCATCAATTACCAAAACCAAA 58.572 29.630 0.00 0.00 43.33 3.28
142 143 7.778470 TTGTCATCAATTACCAAAACCAAAC 57.222 32.000 0.00 0.00 0.00 2.93
143 144 6.878317 TGTCATCAATTACCAAAACCAAACA 58.122 32.000 0.00 0.00 0.00 2.83
144 145 7.504403 TGTCATCAATTACCAAAACCAAACAT 58.496 30.769 0.00 0.00 0.00 2.71
145 146 7.440556 TGTCATCAATTACCAAAACCAAACATG 59.559 33.333 0.00 0.00 0.00 3.21
146 147 6.933521 TCATCAATTACCAAAACCAAACATGG 59.066 34.615 0.00 0.00 38.91 3.66
147 148 5.615289 TCAATTACCAAAACCAAACATGGG 58.385 37.500 0.00 0.00 37.26 4.00
148 149 4.632327 ATTACCAAAACCAAACATGGGG 57.368 40.909 0.00 0.00 37.26 4.96
149 150 1.135960 ACCAAAACCAAACATGGGGG 58.864 50.000 0.00 0.00 37.26 5.40
150 151 0.250684 CCAAAACCAAACATGGGGGC 60.251 55.000 0.00 0.00 0.00 5.80
151 152 0.471617 CAAAACCAAACATGGGGGCA 59.528 50.000 0.00 0.00 0.00 5.36
152 153 0.472044 AAAACCAAACATGGGGGCAC 59.528 50.000 0.00 0.00 0.00 5.01
167 168 2.422276 GGCACCACATGTTCTTTCAC 57.578 50.000 0.00 0.00 0.00 3.18
168 169 1.000274 GGCACCACATGTTCTTTCACC 60.000 52.381 0.00 0.00 0.00 4.02
169 170 1.334960 GCACCACATGTTCTTTCACCG 60.335 52.381 0.00 0.00 0.00 4.94
170 171 1.266718 CACCACATGTTCTTTCACCGG 59.733 52.381 0.00 0.00 0.00 5.28
171 172 1.142060 ACCACATGTTCTTTCACCGGA 59.858 47.619 9.46 0.00 0.00 5.14
172 173 1.806542 CCACATGTTCTTTCACCGGAG 59.193 52.381 9.46 0.00 0.00 4.63
173 174 2.549992 CCACATGTTCTTTCACCGGAGA 60.550 50.000 9.46 1.33 0.00 3.71
174 175 3.338249 CACATGTTCTTTCACCGGAGAT 58.662 45.455 9.46 0.00 0.00 2.75
175 176 3.372206 CACATGTTCTTTCACCGGAGATC 59.628 47.826 9.46 0.00 0.00 2.75
176 177 2.762535 TGTTCTTTCACCGGAGATCC 57.237 50.000 9.46 0.00 0.00 3.36
177 178 1.278127 TGTTCTTTCACCGGAGATCCC 59.722 52.381 9.46 0.00 0.00 3.85
178 179 1.278127 GTTCTTTCACCGGAGATCCCA 59.722 52.381 9.46 0.00 34.14 4.37
179 180 1.195115 TCTTTCACCGGAGATCCCAG 58.805 55.000 9.46 0.00 34.14 4.45
180 181 0.179000 CTTTCACCGGAGATCCCAGG 59.821 60.000 9.46 0.00 35.58 4.45
181 182 1.910580 TTTCACCGGAGATCCCAGGC 61.911 60.000 9.46 0.00 33.66 4.85
182 183 4.227134 CACCGGAGATCCCAGGCG 62.227 72.222 9.46 0.00 33.66 5.52
199 200 4.120755 GGGAGCTTGGGGGCAGAG 62.121 72.222 0.00 0.00 34.17 3.35
200 201 3.334054 GGAGCTTGGGGGCAGAGT 61.334 66.667 0.00 0.00 34.17 3.24
201 202 2.045536 GAGCTTGGGGGCAGAGTG 60.046 66.667 0.00 0.00 34.17 3.51
202 203 3.635268 GAGCTTGGGGGCAGAGTGG 62.635 68.421 0.00 0.00 34.17 4.00
203 204 3.650950 GCTTGGGGGCAGAGTGGA 61.651 66.667 0.00 0.00 0.00 4.02
204 205 2.988839 GCTTGGGGGCAGAGTGGAT 61.989 63.158 0.00 0.00 0.00 3.41
205 206 1.225704 CTTGGGGGCAGAGTGGATC 59.774 63.158 0.00 0.00 0.00 3.36
206 207 2.599645 CTTGGGGGCAGAGTGGATCG 62.600 65.000 0.00 0.00 0.00 3.69
207 208 3.866582 GGGGGCAGAGTGGATCGG 61.867 72.222 0.00 0.00 0.00 4.18
208 209 2.764128 GGGGCAGAGTGGATCGGA 60.764 66.667 0.00 0.00 0.00 4.55
209 210 2.801631 GGGGCAGAGTGGATCGGAG 61.802 68.421 0.00 0.00 0.00 4.63
210 211 1.758514 GGGCAGAGTGGATCGGAGA 60.759 63.158 0.00 0.00 45.75 3.71
211 212 1.739049 GGCAGAGTGGATCGGAGAG 59.261 63.158 0.00 0.00 43.63 3.20
212 213 1.067250 GCAGAGTGGATCGGAGAGC 59.933 63.158 0.00 0.00 43.63 4.09
221 222 1.863267 GATCGGAGAGCATTGGAGTG 58.137 55.000 0.00 0.00 45.47 3.51
222 223 0.467384 ATCGGAGAGCATTGGAGTGG 59.533 55.000 0.00 0.00 43.63 4.00
223 224 0.614697 TCGGAGAGCATTGGAGTGGA 60.615 55.000 0.00 0.00 0.00 4.02
224 225 0.179089 CGGAGAGCATTGGAGTGGAG 60.179 60.000 0.00 0.00 0.00 3.86
225 226 0.908198 GGAGAGCATTGGAGTGGAGT 59.092 55.000 0.00 0.00 0.00 3.85
226 227 1.406614 GGAGAGCATTGGAGTGGAGTG 60.407 57.143 0.00 0.00 0.00 3.51
227 228 0.617413 AGAGCATTGGAGTGGAGTGG 59.383 55.000 0.00 0.00 0.00 4.00
228 229 0.326264 GAGCATTGGAGTGGAGTGGT 59.674 55.000 0.00 0.00 0.00 4.16
229 230 0.773644 AGCATTGGAGTGGAGTGGTT 59.226 50.000 0.00 0.00 0.00 3.67
230 231 1.985159 AGCATTGGAGTGGAGTGGTTA 59.015 47.619 0.00 0.00 0.00 2.85
231 232 2.026822 AGCATTGGAGTGGAGTGGTTAG 60.027 50.000 0.00 0.00 0.00 2.34
232 233 2.941415 GCATTGGAGTGGAGTGGTTAGG 60.941 54.545 0.00 0.00 0.00 2.69
233 234 1.358152 TTGGAGTGGAGTGGTTAGGG 58.642 55.000 0.00 0.00 0.00 3.53
234 235 0.192566 TGGAGTGGAGTGGTTAGGGT 59.807 55.000 0.00 0.00 0.00 4.34
235 236 1.359168 GGAGTGGAGTGGTTAGGGTT 58.641 55.000 0.00 0.00 0.00 4.11
236 237 1.703513 GGAGTGGAGTGGTTAGGGTTT 59.296 52.381 0.00 0.00 0.00 3.27
237 238 2.552373 GGAGTGGAGTGGTTAGGGTTTG 60.552 54.545 0.00 0.00 0.00 2.93
238 239 1.423921 AGTGGAGTGGTTAGGGTTTGG 59.576 52.381 0.00 0.00 0.00 3.28
239 240 1.144298 GTGGAGTGGTTAGGGTTTGGT 59.856 52.381 0.00 0.00 0.00 3.67
240 241 1.422402 TGGAGTGGTTAGGGTTTGGTC 59.578 52.381 0.00 0.00 0.00 4.02
241 242 1.271762 GGAGTGGTTAGGGTTTGGTCC 60.272 57.143 0.00 0.00 0.00 4.46
242 243 0.399075 AGTGGTTAGGGTTTGGTCCG 59.601 55.000 0.00 0.00 0.00 4.79
243 244 0.607217 GTGGTTAGGGTTTGGTCCGG 60.607 60.000 0.00 0.00 0.00 5.14
244 245 0.767446 TGGTTAGGGTTTGGTCCGGA 60.767 55.000 0.00 0.00 0.00 5.14
245 246 0.401356 GGTTAGGGTTTGGTCCGGAA 59.599 55.000 5.23 0.00 0.00 4.30
246 247 1.202915 GGTTAGGGTTTGGTCCGGAAA 60.203 52.381 5.23 0.00 0.00 3.13
247 248 2.156917 GTTAGGGTTTGGTCCGGAAAG 58.843 52.381 5.23 0.00 0.00 2.62
248 249 0.037160 TAGGGTTTGGTCCGGAAAGC 59.963 55.000 5.23 6.90 0.00 3.51
249 250 2.622962 GGGTTTGGTCCGGAAAGCG 61.623 63.158 5.23 0.00 32.69 4.68
250 251 2.622962 GGTTTGGTCCGGAAAGCGG 61.623 63.158 5.23 0.00 0.00 5.52
251 252 1.598685 GTTTGGTCCGGAAAGCGGA 60.599 57.895 5.23 0.00 0.00 5.54
252 253 0.958876 GTTTGGTCCGGAAAGCGGAT 60.959 55.000 5.23 0.00 37.88 4.18
253 254 0.958382 TTTGGTCCGGAAAGCGGATG 60.958 55.000 5.23 0.00 37.88 3.51
254 255 1.832719 TTGGTCCGGAAAGCGGATGA 61.833 55.000 5.23 0.00 37.88 2.92
255 256 1.146263 GGTCCGGAAAGCGGATGAT 59.854 57.895 5.23 0.00 37.88 2.45
256 257 0.391597 GGTCCGGAAAGCGGATGATA 59.608 55.000 5.23 0.00 37.88 2.15
257 258 1.202604 GGTCCGGAAAGCGGATGATAA 60.203 52.381 5.23 0.00 37.88 1.75
258 259 1.865340 GTCCGGAAAGCGGATGATAAC 59.135 52.381 5.23 0.00 37.88 1.89
259 260 0.859232 CCGGAAAGCGGATGATAACG 59.141 55.000 0.00 0.00 0.00 3.18
260 261 1.537348 CCGGAAAGCGGATGATAACGA 60.537 52.381 0.00 0.00 0.00 3.85
261 262 1.521423 CGGAAAGCGGATGATAACGAC 59.479 52.381 0.00 0.00 0.00 4.34
262 263 1.865340 GGAAAGCGGATGATAACGACC 59.135 52.381 0.00 0.00 0.00 4.79
263 264 2.546778 GAAAGCGGATGATAACGACCA 58.453 47.619 0.00 0.00 0.00 4.02
264 265 2.910688 AAGCGGATGATAACGACCAT 57.089 45.000 0.00 0.00 0.00 3.55
265 266 4.304110 GAAAGCGGATGATAACGACCATA 58.696 43.478 0.00 0.00 0.00 2.74
266 267 4.537135 AAGCGGATGATAACGACCATAT 57.463 40.909 0.00 0.00 0.00 1.78
267 268 3.849911 AGCGGATGATAACGACCATATG 58.150 45.455 0.00 0.00 0.00 1.78
268 269 3.258372 AGCGGATGATAACGACCATATGT 59.742 43.478 1.24 0.00 0.00 2.29
269 270 3.367932 GCGGATGATAACGACCATATGTG 59.632 47.826 1.24 0.00 0.00 3.21
283 284 5.165961 CCATATGTGGGTAGGGTAGATTG 57.834 47.826 0.00 0.00 42.11 2.67
284 285 4.019321 CCATATGTGGGTAGGGTAGATTGG 60.019 50.000 0.00 0.00 42.11 3.16
285 286 1.209621 TGTGGGTAGGGTAGATTGGC 58.790 55.000 0.00 0.00 0.00 4.52
286 287 0.106149 GTGGGTAGGGTAGATTGGCG 59.894 60.000 0.00 0.00 0.00 5.69
287 288 0.325860 TGGGTAGGGTAGATTGGCGT 60.326 55.000 0.00 0.00 0.00 5.68
288 289 1.063038 TGGGTAGGGTAGATTGGCGTA 60.063 52.381 0.00 0.00 0.00 4.42
289 290 1.617357 GGGTAGGGTAGATTGGCGTAG 59.383 57.143 0.00 0.00 0.00 3.51
336 337 4.408821 TTGCGCCCGAGCCATTCT 62.409 61.111 4.18 0.00 36.02 2.40
345 346 1.204704 CCGAGCCATTCTATATCCGCA 59.795 52.381 0.00 0.00 0.00 5.69
354 355 7.124298 AGCCATTCTATATCCGCACTAGATTTA 59.876 37.037 0.00 0.00 0.00 1.40
360 361 1.412710 TCCGCACTAGATTTAGGCTGG 59.587 52.381 0.00 3.02 0.00 4.85
368 369 6.071108 GCACTAGATTTAGGCTGGATATGAGA 60.071 42.308 0.00 0.00 0.00 3.27
381 382 1.043116 TATGAGAGGTGCCGGTCAGG 61.043 60.000 1.90 0.00 44.97 3.86
394 395 2.467566 GGTCAGGCCGAAAGTCTAAA 57.532 50.000 0.00 0.00 0.00 1.85
396 397 1.732809 GTCAGGCCGAAAGTCTAAAGC 59.267 52.381 0.00 0.00 0.00 3.51
402 403 2.148768 CCGAAAGTCTAAAGCCGGTTT 58.851 47.619 1.90 0.00 33.02 3.27
470 472 3.744719 CCGTCTGGGCGTTCGAGA 61.745 66.667 0.00 0.00 0.00 4.04
477 479 1.186917 TGGGCGTTCGAGAGGGTTTA 61.187 55.000 0.00 0.00 0.00 2.01
489 491 3.066190 GGTTTAAGGTGCCCGGCC 61.066 66.667 7.03 0.00 0.00 6.13
490 492 2.035155 GTTTAAGGTGCCCGGCCT 59.965 61.111 7.03 0.00 38.11 5.19
498 500 3.089874 TGCCCGGCCTTAGATGCT 61.090 61.111 7.03 0.00 0.00 3.79
499 501 2.281139 GCCCGGCCTTAGATGCTC 60.281 66.667 0.00 0.00 0.00 4.26
503 505 1.625818 CCCGGCCTTAGATGCTCTTAT 59.374 52.381 0.00 0.00 0.00 1.73
504 506 2.832129 CCCGGCCTTAGATGCTCTTATA 59.168 50.000 0.00 0.00 0.00 0.98
505 507 3.118956 CCCGGCCTTAGATGCTCTTATAG 60.119 52.174 0.00 0.00 0.00 1.31
506 508 3.511934 CCGGCCTTAGATGCTCTTATAGT 59.488 47.826 0.00 0.00 0.00 2.12
507 509 4.021016 CCGGCCTTAGATGCTCTTATAGTT 60.021 45.833 0.00 0.00 0.00 2.24
509 511 6.295123 CCGGCCTTAGATGCTCTTATAGTTTA 60.295 42.308 0.00 0.00 0.00 2.01
510 512 7.324178 CGGCCTTAGATGCTCTTATAGTTTAT 58.676 38.462 0.00 0.00 0.00 1.40
511 513 7.819900 CGGCCTTAGATGCTCTTATAGTTTATT 59.180 37.037 0.00 0.00 0.00 1.40
536 538 4.060038 AGCTCCTAATTACCACATGACG 57.940 45.455 0.00 0.00 0.00 4.35
572 574 6.906678 GCAACCTTCAAAGCAAACAAAAATAG 59.093 34.615 0.00 0.00 0.00 1.73
720 729 3.310501 AGAAATAAAATAACCCCGTCGCG 59.689 43.478 0.00 0.00 0.00 5.87
798 807 1.286248 ACGCTACCAATTTCCCTCCT 58.714 50.000 0.00 0.00 0.00 3.69
851 860 2.660802 CTTAACCCCTCGCACCGT 59.339 61.111 0.00 0.00 0.00 4.83
852 861 1.004200 CTTAACCCCTCGCACCGTT 60.004 57.895 0.00 0.00 0.00 4.44
1200 1209 0.558220 AGGAGGGGATCGTCATCAGA 59.442 55.000 2.66 0.00 0.00 3.27
1380 1392 0.742505 TTCGGTAGAATCGTCGGCAT 59.257 50.000 0.00 0.00 0.00 4.40
1394 1406 3.121279 CGTCGGCATCTTATTACCATTCG 59.879 47.826 0.00 0.00 0.00 3.34
1412 1424 4.712122 TTCGCTGAATAATTTGGGGAAC 57.288 40.909 0.00 0.00 0.00 3.62
1475 1487 7.011773 CGATTTATCTGGTATCGATTGCAAAG 58.988 38.462 1.71 0.32 42.70 2.77
1529 1541 6.600427 TGGAGTAATCTGTGTATGTAGTTCGA 59.400 38.462 0.00 0.00 0.00 3.71
1530 1542 6.911511 GGAGTAATCTGTGTATGTAGTTCGAC 59.088 42.308 0.00 0.00 0.00 4.20
1531 1543 6.484540 AGTAATCTGTGTATGTAGTTCGACG 58.515 40.000 0.00 0.00 0.00 5.12
1532 1544 3.752412 TCTGTGTATGTAGTTCGACGG 57.248 47.619 0.00 0.00 0.00 4.79
1533 1545 3.076621 TCTGTGTATGTAGTTCGACGGT 58.923 45.455 0.00 0.00 0.00 4.83
1534 1546 3.125829 TCTGTGTATGTAGTTCGACGGTC 59.874 47.826 0.00 0.00 0.00 4.79
1535 1547 2.162208 TGTGTATGTAGTTCGACGGTCC 59.838 50.000 1.91 0.00 0.00 4.46
1536 1548 1.398041 TGTATGTAGTTCGACGGTCCG 59.602 52.381 10.48 10.48 0.00 4.79
1560 1579 0.116342 GAGATTTGGGGTTTGGGGGT 59.884 55.000 0.00 0.00 0.00 4.95
1593 1612 4.708909 TGTTTGGATGGCAAATGCTACATA 59.291 37.500 5.25 0.00 41.70 2.29
1596 1615 4.472496 TGGATGGCAAATGCTACATACAT 58.528 39.130 5.25 0.00 41.70 2.29
1609 1628 6.676950 TGCTACATACATGTTGTTTTCCTTG 58.323 36.000 2.30 0.00 41.97 3.61
1655 1674 1.415672 TTCTTGTCGGCTTGGGAGGT 61.416 55.000 0.00 0.00 0.00 3.85
1656 1675 0.543410 TCTTGTCGGCTTGGGAGGTA 60.543 55.000 0.00 0.00 0.00 3.08
1657 1676 0.391263 CTTGTCGGCTTGGGAGGTAC 60.391 60.000 0.00 0.00 0.00 3.34
1659 1678 3.072468 TCGGCTTGGGAGGTACCG 61.072 66.667 6.18 0.00 45.15 4.02
1875 1898 4.769688 CCTGAGGTGTATGTATCTGCAAA 58.230 43.478 0.00 0.00 0.00 3.68
1878 1901 5.804639 TGAGGTGTATGTATCTGCAAAACT 58.195 37.500 0.00 0.00 0.00 2.66
2092 2115 4.037208 ACTTTTCACATTGAAGCTCCACAG 59.963 41.667 0.00 0.00 37.70 3.66
2099 2122 5.178996 CACATTGAAGCTCCACAGATATAGC 59.821 44.000 0.00 0.00 35.16 2.97
2200 2223 7.292713 TCACTGTTTGTGTAGTCATAGGTTA 57.707 36.000 0.00 0.00 46.27 2.85
2238 2261 0.905357 ACCTGACACTGGTGCTATCC 59.095 55.000 0.17 0.00 34.44 2.59
2254 2277 3.939592 GCTATCCGCACTAGGTTTTCTTT 59.060 43.478 0.00 0.00 38.92 2.52
2306 2329 5.346822 GCTGTCCATTTTCATTGTTCATGTC 59.653 40.000 0.00 0.00 34.06 3.06
2401 2424 8.257306 TGATACACTTACTGCATACATGAGAAA 58.743 33.333 0.00 0.00 0.00 2.52
2591 2615 2.047061 GCAGTCCACATATGACCCCTA 58.953 52.381 10.38 0.00 33.09 3.53
2695 2719 3.429207 GCACGTAGAAACCTCTTGTTCTC 59.571 47.826 0.00 0.00 35.67 2.87
2701 2725 7.611079 ACGTAGAAACCTCTTGTTCTCTACTAT 59.389 37.037 16.26 8.61 35.67 2.12
3462 3492 6.549912 AATTTCAGTTTTGGAGGTACGTAC 57.450 37.500 17.56 17.56 0.00 3.67
3501 3533 4.998671 TCTTGCAACCTTGAAATTGTCA 57.001 36.364 0.00 0.00 0.00 3.58
3502 3534 4.681744 TCTTGCAACCTTGAAATTGTCAC 58.318 39.130 0.00 0.00 35.39 3.67
3576 3608 2.956333 AGCCTTTTGTGTAACCTTGTCC 59.044 45.455 0.00 0.00 34.36 4.02
3830 3867 5.828299 TTTGTACTTAATAGCATGCCACC 57.172 39.130 15.66 0.00 0.00 4.61
3993 4030 8.296713 GGTCACTTTATTGCTAATTGTTCAGAA 58.703 33.333 0.00 0.00 0.00 3.02
4047 4084 7.416817 TGTATGGAGATAATTTTGTTGCGATG 58.583 34.615 0.00 0.00 0.00 3.84
4157 4194 9.219603 CTGATGAGGTAATGAAACAGTAAAAGA 57.780 33.333 0.00 0.00 0.00 2.52
4338 4391 2.700371 TGTCACTCTTCTCTTTGAGGCA 59.300 45.455 0.00 0.00 34.84 4.75
4342 4395 6.112058 GTCACTCTTCTCTTTGAGGCATATT 58.888 40.000 0.00 0.00 34.84 1.28
4730 4787 3.576982 TGAAAAGTACACCGGACTCTGAT 59.423 43.478 9.46 0.00 0.00 2.90
4731 4788 4.039973 TGAAAAGTACACCGGACTCTGATT 59.960 41.667 9.46 0.00 0.00 2.57
4839 4900 6.578023 ACTCTTGATCTTTGTACTATCCAGC 58.422 40.000 0.00 0.00 0.00 4.85
4842 4903 5.894298 TGATCTTTGTACTATCCAGCCAT 57.106 39.130 0.00 0.00 0.00 4.40
4843 4904 6.252599 TGATCTTTGTACTATCCAGCCATT 57.747 37.500 0.00 0.00 0.00 3.16
4866 4927 9.341899 CATTTTTCTGGTAGCAATAACAGTAAC 57.658 33.333 0.00 0.00 32.92 2.50
5005 5066 4.642885 GCTGACTACTACCTTCTCACTGAT 59.357 45.833 0.00 0.00 0.00 2.90
5082 5143 8.295288 AGAAATGAATTCACTGTGATCTTGTTC 58.705 33.333 11.07 10.84 40.72 3.18
5119 5180 6.099269 ACCTGACCTCAACTTTGAAGTACTTA 59.901 38.462 8.42 0.00 38.57 2.24
5172 5233 4.802248 CAGTTCTTAGCTGAAGAGGCAACT 60.802 45.833 0.00 0.11 45.05 3.16
5196 5257 3.964875 CGCACACCCCAGCAACAC 61.965 66.667 0.00 0.00 0.00 3.32
5217 5278 1.737793 CCAGCAGTTGTCGGTAAATCC 59.262 52.381 0.00 0.00 0.00 3.01
5252 5313 4.749245 CAACCTGTGGATAGACAACAAC 57.251 45.455 0.00 0.00 0.00 3.32
5261 5322 6.316890 TGTGGATAGACAACAACATGATGATG 59.683 38.462 10.29 10.69 35.49 3.07
5262 5323 5.824097 TGGATAGACAACAACATGATGATGG 59.176 40.000 15.87 5.30 33.39 3.51
5299 5363 0.526211 GTTCGTTTCTTGGGGATGGC 59.474 55.000 0.00 0.00 0.00 4.40
5346 5410 4.273318 GAGGCTGGTGATTTCTACCAAAT 58.727 43.478 0.00 0.00 46.81 2.32
5466 5530 6.737301 CGTATGTACATTGAGTCGCTAGTATC 59.263 42.308 14.77 0.00 0.00 2.24
5473 5537 5.386958 TTGAGTCGCTAGTATCTTGTGTT 57.613 39.130 0.00 0.00 0.00 3.32
5532 5596 3.217626 CAACTGGATTCCCCTGATAAGC 58.782 50.000 0.00 0.00 37.33 3.09
5584 5648 6.014669 TGCAAAAACCTGTAAATATTCTGGCT 60.015 34.615 0.00 0.00 0.00 4.75
5593 5657 6.399743 TGTAAATATTCTGGCTGACGTGTAA 58.600 36.000 0.00 0.00 0.00 2.41
5677 5741 6.743575 TTCTATGCAGAAGAGTTTAAAGGC 57.256 37.500 0.00 0.00 35.82 4.35
5819 5889 6.800543 TGTTTTACAAGAGCAGCAAACATAA 58.199 32.000 0.00 0.00 31.00 1.90
5937 6007 4.913335 TCGATCGAAGTGCCTATACTTT 57.087 40.909 16.99 0.00 40.78 2.66
6085 6155 2.398554 CGCGAATGTCCCCACCTTG 61.399 63.158 0.00 0.00 0.00 3.61
6146 6217 9.197694 GCATTTATATTACAACAAACACAACCA 57.802 29.630 0.00 0.00 0.00 3.67
6154 6225 0.248458 CAAACACAACCACCGTCTGC 60.248 55.000 0.00 0.00 0.00 4.26
6164 6235 2.093658 ACCACCGTCTGCGATTAAGAAT 60.094 45.455 0.00 0.00 41.33 2.40
6188 6259 0.039437 TGACCAGCTCGAGTCGAAAC 60.039 55.000 17.27 11.63 34.74 2.78
6189 6260 0.241481 GACCAGCTCGAGTCGAAACT 59.759 55.000 17.27 13.77 38.88 2.66
6197 6268 2.265096 GAGTCGAAACTCGGGGAGT 58.735 57.895 0.00 0.00 45.64 3.85
6198 6269 0.109226 GAGTCGAAACTCGGGGAGTG 60.109 60.000 0.00 0.00 42.59 3.51
6199 6270 1.080025 GTCGAAACTCGGGGAGTGG 60.080 63.158 0.00 0.00 42.59 4.00
6200 6271 1.532316 TCGAAACTCGGGGAGTGGT 60.532 57.895 0.00 0.00 42.59 4.16
6201 6272 1.117142 TCGAAACTCGGGGAGTGGTT 61.117 55.000 0.00 0.00 42.59 3.67
6202 6273 0.250166 CGAAACTCGGGGAGTGGTTT 60.250 55.000 0.00 0.00 42.59 3.27
6203 6274 1.001181 CGAAACTCGGGGAGTGGTTTA 59.999 52.381 0.00 0.00 42.59 2.01
6204 6275 2.696506 GAAACTCGGGGAGTGGTTTAG 58.303 52.381 0.00 0.00 42.59 1.85
6205 6276 1.725803 AACTCGGGGAGTGGTTTAGT 58.274 50.000 0.00 0.00 42.59 2.24
6206 6277 1.725803 ACTCGGGGAGTGGTTTAGTT 58.274 50.000 0.00 0.00 41.76 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.661222 TGACCAATGTGCTATTCAAGGAA 58.339 39.130 0.00 0.00 0.00 3.36
4 5 4.299586 TGACCAATGTGCTATTCAAGGA 57.700 40.909 0.00 0.00 0.00 3.36
5 6 4.641541 TGATGACCAATGTGCTATTCAAGG 59.358 41.667 0.00 0.00 0.00 3.61
6 7 5.124297 TGTGATGACCAATGTGCTATTCAAG 59.876 40.000 0.00 0.00 0.00 3.02
7 8 5.008980 TGTGATGACCAATGTGCTATTCAA 58.991 37.500 0.00 0.00 0.00 2.69
8 9 4.587891 TGTGATGACCAATGTGCTATTCA 58.412 39.130 0.00 0.00 0.00 2.57
9 10 5.762825 ATGTGATGACCAATGTGCTATTC 57.237 39.130 0.00 0.00 0.00 1.75
10 11 7.340232 AGTTTATGTGATGACCAATGTGCTATT 59.660 33.333 0.00 0.00 0.00 1.73
11 12 6.830324 AGTTTATGTGATGACCAATGTGCTAT 59.170 34.615 0.00 0.00 0.00 2.97
12 13 6.179756 AGTTTATGTGATGACCAATGTGCTA 58.820 36.000 0.00 0.00 0.00 3.49
13 14 5.012239 AGTTTATGTGATGACCAATGTGCT 58.988 37.500 0.00 0.00 0.00 4.40
14 15 5.314923 AGTTTATGTGATGACCAATGTGC 57.685 39.130 0.00 0.00 0.00 4.57
15 16 5.649395 AGGAGTTTATGTGATGACCAATGTG 59.351 40.000 0.00 0.00 0.00 3.21
16 17 5.819991 AGGAGTTTATGTGATGACCAATGT 58.180 37.500 0.00 0.00 0.00 2.71
17 18 6.375174 TCAAGGAGTTTATGTGATGACCAATG 59.625 38.462 0.00 0.00 0.00 2.82
18 19 6.484288 TCAAGGAGTTTATGTGATGACCAAT 58.516 36.000 0.00 0.00 0.00 3.16
19 20 5.875224 TCAAGGAGTTTATGTGATGACCAA 58.125 37.500 0.00 0.00 0.00 3.67
20 21 5.497464 TCAAGGAGTTTATGTGATGACCA 57.503 39.130 0.00 0.00 0.00 4.02
21 22 6.349363 GGTTTCAAGGAGTTTATGTGATGACC 60.349 42.308 0.00 0.00 0.00 4.02
22 23 6.206634 TGGTTTCAAGGAGTTTATGTGATGAC 59.793 38.462 0.00 0.00 0.00 3.06
23 24 6.303054 TGGTTTCAAGGAGTTTATGTGATGA 58.697 36.000 0.00 0.00 0.00 2.92
24 25 6.573664 TGGTTTCAAGGAGTTTATGTGATG 57.426 37.500 0.00 0.00 0.00 3.07
25 26 6.549364 TGTTGGTTTCAAGGAGTTTATGTGAT 59.451 34.615 0.00 0.00 32.92 3.06
26 27 5.888724 TGTTGGTTTCAAGGAGTTTATGTGA 59.111 36.000 0.00 0.00 32.92 3.58
27 28 6.142818 TGTTGGTTTCAAGGAGTTTATGTG 57.857 37.500 0.00 0.00 32.92 3.21
28 29 6.976934 ATGTTGGTTTCAAGGAGTTTATGT 57.023 33.333 0.00 0.00 32.92 2.29
29 30 7.975616 CCATATGTTGGTTTCAAGGAGTTTATG 59.024 37.037 1.24 0.00 40.99 1.90
30 31 7.893302 TCCATATGTTGGTTTCAAGGAGTTTAT 59.107 33.333 1.24 0.00 46.52 1.40
31 32 7.235079 TCCATATGTTGGTTTCAAGGAGTTTA 58.765 34.615 1.24 0.00 46.52 2.01
32 33 6.074648 TCCATATGTTGGTTTCAAGGAGTTT 58.925 36.000 1.24 0.00 46.52 2.66
33 34 5.640147 TCCATATGTTGGTTTCAAGGAGTT 58.360 37.500 1.24 0.00 46.52 3.01
34 35 5.255397 TCCATATGTTGGTTTCAAGGAGT 57.745 39.130 1.24 0.00 46.52 3.85
35 36 6.780457 AATCCATATGTTGGTTTCAAGGAG 57.220 37.500 1.24 0.00 46.52 3.69
36 37 6.723515 TGAAATCCATATGTTGGTTTCAAGGA 59.276 34.615 14.42 0.00 44.01 3.36
37 38 6.934056 TGAAATCCATATGTTGGTTTCAAGG 58.066 36.000 14.42 0.00 44.01 3.61
40 41 7.773489 TCTTGAAATCCATATGTTGGTTTCA 57.227 32.000 13.34 13.34 46.52 2.69
41 42 9.657419 ATTTCTTGAAATCCATATGTTGGTTTC 57.343 29.630 9.54 9.54 46.52 2.78
48 49 9.645128 TGTCCATATTTCTTGAAATCCATATGT 57.355 29.630 11.31 0.00 0.00 2.29
53 54 8.477256 GGATTTGTCCATATTTCTTGAAATCCA 58.523 33.333 11.31 0.00 43.57 3.41
54 55 8.699130 AGGATTTGTCCATATTTCTTGAAATCC 58.301 33.333 11.31 0.00 44.08 3.01
57 58 9.087871 TGAAGGATTTGTCCATATTTCTTGAAA 57.912 29.630 0.00 0.00 0.00 2.69
58 59 8.648698 TGAAGGATTTGTCCATATTTCTTGAA 57.351 30.769 0.00 0.00 0.00 2.69
59 60 8.648698 TTGAAGGATTTGTCCATATTTCTTGA 57.351 30.769 0.00 0.00 0.00 3.02
60 61 9.880157 ATTTGAAGGATTTGTCCATATTTCTTG 57.120 29.630 0.00 0.00 0.00 3.02
68 69 9.699410 TGAGTTATATTTGAAGGATTTGTCCAT 57.301 29.630 0.00 0.00 0.00 3.41
69 70 9.527157 TTGAGTTATATTTGAAGGATTTGTCCA 57.473 29.630 0.00 0.00 0.00 4.02
76 77 9.965902 AGTTGTCTTGAGTTATATTTGAAGGAT 57.034 29.630 0.00 0.00 0.00 3.24
89 90 9.256228 TCTATGGACTAATAGTTGTCTTGAGTT 57.744 33.333 4.85 0.00 32.82 3.01
90 91 8.824756 TCTATGGACTAATAGTTGTCTTGAGT 57.175 34.615 4.85 0.00 32.82 3.41
91 92 9.126151 TCTCTATGGACTAATAGTTGTCTTGAG 57.874 37.037 4.85 7.32 32.82 3.02
92 93 9.647918 ATCTCTATGGACTAATAGTTGTCTTGA 57.352 33.333 4.85 0.00 32.82 3.02
95 96 9.427821 ACAATCTCTATGGACTAATAGTTGTCT 57.572 33.333 4.85 0.00 28.40 3.41
96 97 9.685828 GACAATCTCTATGGACTAATAGTTGTC 57.314 37.037 0.00 0.00 36.97 3.18
97 98 9.201989 TGACAATCTCTATGGACTAATAGTTGT 57.798 33.333 0.00 0.00 33.22 3.32
100 101 9.593565 TGATGACAATCTCTATGGACTAATAGT 57.406 33.333 0.00 0.00 33.61 2.12
106 107 8.153550 GGTAATTGATGACAATCTCTATGGACT 58.846 37.037 0.00 0.00 44.67 3.85
107 108 7.933577 TGGTAATTGATGACAATCTCTATGGAC 59.066 37.037 0.00 0.00 44.67 4.02
108 109 8.033178 TGGTAATTGATGACAATCTCTATGGA 57.967 34.615 0.00 0.00 44.67 3.41
109 110 8.681486 TTGGTAATTGATGACAATCTCTATGG 57.319 34.615 0.00 0.00 44.67 2.74
112 113 8.956426 GGTTTTGGTAATTGATGACAATCTCTA 58.044 33.333 0.00 0.00 44.67 2.43
113 114 7.451255 TGGTTTTGGTAATTGATGACAATCTCT 59.549 33.333 0.00 0.00 44.67 3.10
114 115 7.601856 TGGTTTTGGTAATTGATGACAATCTC 58.398 34.615 0.00 0.00 44.67 2.75
115 116 7.537596 TGGTTTTGGTAATTGATGACAATCT 57.462 32.000 0.00 0.00 44.67 2.40
116 117 8.495148 GTTTGGTTTTGGTAATTGATGACAATC 58.505 33.333 0.00 0.00 44.67 2.67
117 118 7.989741 TGTTTGGTTTTGGTAATTGATGACAAT 59.010 29.630 0.00 0.00 46.99 2.71
118 119 7.331026 TGTTTGGTTTTGGTAATTGATGACAA 58.669 30.769 0.00 0.00 40.42 3.18
119 120 6.878317 TGTTTGGTTTTGGTAATTGATGACA 58.122 32.000 0.00 0.00 0.00 3.58
120 121 7.095271 CCATGTTTGGTTTTGGTAATTGATGAC 60.095 37.037 0.00 0.00 38.30 3.06
121 122 6.933521 CCATGTTTGGTTTTGGTAATTGATGA 59.066 34.615 0.00 0.00 38.30 2.92
122 123 6.149142 CCCATGTTTGGTTTTGGTAATTGATG 59.851 38.462 0.00 0.00 41.91 3.07
123 124 6.237154 CCCATGTTTGGTTTTGGTAATTGAT 58.763 36.000 0.00 0.00 41.91 2.57
124 125 5.455326 CCCCATGTTTGGTTTTGGTAATTGA 60.455 40.000 0.00 0.00 41.91 2.57
125 126 4.759183 CCCCATGTTTGGTTTTGGTAATTG 59.241 41.667 0.00 0.00 41.91 2.32
126 127 4.202514 CCCCCATGTTTGGTTTTGGTAATT 60.203 41.667 0.00 0.00 41.91 1.40
127 128 3.329225 CCCCCATGTTTGGTTTTGGTAAT 59.671 43.478 0.00 0.00 41.91 1.89
128 129 2.706190 CCCCCATGTTTGGTTTTGGTAA 59.294 45.455 0.00 0.00 41.91 2.85
129 130 2.330216 CCCCCATGTTTGGTTTTGGTA 58.670 47.619 0.00 0.00 41.91 3.25
130 131 1.135960 CCCCCATGTTTGGTTTTGGT 58.864 50.000 0.00 0.00 41.91 3.67
131 132 0.250684 GCCCCCATGTTTGGTTTTGG 60.251 55.000 0.00 0.00 41.91 3.28
132 133 0.471617 TGCCCCCATGTTTGGTTTTG 59.528 50.000 0.00 0.00 41.91 2.44
133 134 0.472044 GTGCCCCCATGTTTGGTTTT 59.528 50.000 0.00 0.00 41.91 2.43
134 135 1.414866 GGTGCCCCCATGTTTGGTTT 61.415 55.000 0.00 0.00 41.91 3.27
135 136 1.841103 GGTGCCCCCATGTTTGGTT 60.841 57.895 0.00 0.00 41.91 3.67
136 137 2.203773 GGTGCCCCCATGTTTGGT 60.204 61.111 0.00 0.00 41.91 3.67
137 138 2.203758 TGGTGCCCCCATGTTTGG 60.204 61.111 0.00 0.00 38.72 3.28
144 145 2.017668 AAGAACATGTGGTGCCCCCA 62.018 55.000 0.00 0.00 42.51 4.96
145 146 0.831711 AAAGAACATGTGGTGCCCCC 60.832 55.000 0.00 0.00 0.00 5.40
146 147 0.603065 GAAAGAACATGTGGTGCCCC 59.397 55.000 0.00 0.00 0.00 5.80
147 148 1.000274 GTGAAAGAACATGTGGTGCCC 60.000 52.381 0.00 0.00 0.00 5.36
148 149 1.000274 GGTGAAAGAACATGTGGTGCC 60.000 52.381 0.00 0.00 0.00 5.01
149 150 1.334960 CGGTGAAAGAACATGTGGTGC 60.335 52.381 0.00 0.00 0.00 5.01
150 151 1.266718 CCGGTGAAAGAACATGTGGTG 59.733 52.381 0.00 0.00 0.00 4.17
151 152 1.142060 TCCGGTGAAAGAACATGTGGT 59.858 47.619 0.00 0.00 0.00 4.16
152 153 1.806542 CTCCGGTGAAAGAACATGTGG 59.193 52.381 0.00 0.00 0.00 4.17
153 154 2.766313 TCTCCGGTGAAAGAACATGTG 58.234 47.619 3.14 0.00 0.00 3.21
154 155 3.600388 GATCTCCGGTGAAAGAACATGT 58.400 45.455 10.77 0.00 0.00 3.21
155 156 2.939103 GGATCTCCGGTGAAAGAACATG 59.061 50.000 10.77 0.00 0.00 3.21
156 157 2.092914 GGGATCTCCGGTGAAAGAACAT 60.093 50.000 10.77 0.00 36.71 2.71
157 158 1.278127 GGGATCTCCGGTGAAAGAACA 59.722 52.381 10.77 0.00 36.71 3.18
158 159 1.278127 TGGGATCTCCGGTGAAAGAAC 59.722 52.381 10.77 0.00 38.76 3.01
159 160 1.555075 CTGGGATCTCCGGTGAAAGAA 59.445 52.381 10.77 0.00 38.76 2.52
160 161 1.195115 CTGGGATCTCCGGTGAAAGA 58.805 55.000 10.77 1.05 38.76 2.52
161 162 0.179000 CCTGGGATCTCCGGTGAAAG 59.821 60.000 10.77 6.17 40.38 2.62
162 163 1.910580 GCCTGGGATCTCCGGTGAAA 61.911 60.000 10.77 0.00 40.38 2.69
163 164 2.367202 GCCTGGGATCTCCGGTGAA 61.367 63.158 10.77 0.00 40.38 3.18
164 165 2.764128 GCCTGGGATCTCCGGTGA 60.764 66.667 8.96 8.96 40.38 4.02
165 166 4.227134 CGCCTGGGATCTCCGGTG 62.227 72.222 4.81 3.35 40.38 4.94
182 183 4.120755 CTCTGCCCCCAAGCTCCC 62.121 72.222 0.00 0.00 0.00 4.30
183 184 3.334054 ACTCTGCCCCCAAGCTCC 61.334 66.667 0.00 0.00 0.00 4.70
184 185 2.045536 CACTCTGCCCCCAAGCTC 60.046 66.667 0.00 0.00 0.00 4.09
185 186 3.655211 CCACTCTGCCCCCAAGCT 61.655 66.667 0.00 0.00 0.00 3.74
186 187 2.900671 GATCCACTCTGCCCCCAAGC 62.901 65.000 0.00 0.00 0.00 4.01
187 188 1.225704 GATCCACTCTGCCCCCAAG 59.774 63.158 0.00 0.00 0.00 3.61
188 189 2.669133 CGATCCACTCTGCCCCCAA 61.669 63.158 0.00 0.00 0.00 4.12
189 190 3.083349 CGATCCACTCTGCCCCCA 61.083 66.667 0.00 0.00 0.00 4.96
190 191 3.866582 CCGATCCACTCTGCCCCC 61.867 72.222 0.00 0.00 0.00 5.40
191 192 2.764128 TCCGATCCACTCTGCCCC 60.764 66.667 0.00 0.00 0.00 5.80
192 193 1.743321 CTCTCCGATCCACTCTGCCC 61.743 65.000 0.00 0.00 0.00 5.36
193 194 1.739049 CTCTCCGATCCACTCTGCC 59.261 63.158 0.00 0.00 0.00 4.85
194 195 1.067250 GCTCTCCGATCCACTCTGC 59.933 63.158 0.00 0.00 0.00 4.26
195 196 1.039068 ATGCTCTCCGATCCACTCTG 58.961 55.000 0.00 0.00 0.00 3.35
196 197 1.411977 CAATGCTCTCCGATCCACTCT 59.588 52.381 0.00 0.00 0.00 3.24
197 198 1.539929 CCAATGCTCTCCGATCCACTC 60.540 57.143 0.00 0.00 0.00 3.51
198 199 0.467384 CCAATGCTCTCCGATCCACT 59.533 55.000 0.00 0.00 0.00 4.00
199 200 0.465705 TCCAATGCTCTCCGATCCAC 59.534 55.000 0.00 0.00 0.00 4.02
200 201 0.755079 CTCCAATGCTCTCCGATCCA 59.245 55.000 0.00 0.00 0.00 3.41
201 202 0.755686 ACTCCAATGCTCTCCGATCC 59.244 55.000 0.00 0.00 0.00 3.36
202 203 1.539929 CCACTCCAATGCTCTCCGATC 60.540 57.143 0.00 0.00 0.00 3.69
203 204 0.467384 CCACTCCAATGCTCTCCGAT 59.533 55.000 0.00 0.00 0.00 4.18
204 205 0.614697 TCCACTCCAATGCTCTCCGA 60.615 55.000 0.00 0.00 0.00 4.55
205 206 0.179089 CTCCACTCCAATGCTCTCCG 60.179 60.000 0.00 0.00 0.00 4.63
206 207 0.908198 ACTCCACTCCAATGCTCTCC 59.092 55.000 0.00 0.00 0.00 3.71
207 208 1.406614 CCACTCCACTCCAATGCTCTC 60.407 57.143 0.00 0.00 0.00 3.20
208 209 0.617413 CCACTCCACTCCAATGCTCT 59.383 55.000 0.00 0.00 0.00 4.09
209 210 0.326264 ACCACTCCACTCCAATGCTC 59.674 55.000 0.00 0.00 0.00 4.26
210 211 0.773644 AACCACTCCACTCCAATGCT 59.226 50.000 0.00 0.00 0.00 3.79
211 212 2.359900 CTAACCACTCCACTCCAATGC 58.640 52.381 0.00 0.00 0.00 3.56
212 213 2.356125 CCCTAACCACTCCACTCCAATG 60.356 54.545 0.00 0.00 0.00 2.82
213 214 1.916181 CCCTAACCACTCCACTCCAAT 59.084 52.381 0.00 0.00 0.00 3.16
214 215 1.358152 CCCTAACCACTCCACTCCAA 58.642 55.000 0.00 0.00 0.00 3.53
215 216 0.192566 ACCCTAACCACTCCACTCCA 59.807 55.000 0.00 0.00 0.00 3.86
216 217 1.359168 AACCCTAACCACTCCACTCC 58.641 55.000 0.00 0.00 0.00 3.85
217 218 2.552373 CCAAACCCTAACCACTCCACTC 60.552 54.545 0.00 0.00 0.00 3.51
218 219 1.423921 CCAAACCCTAACCACTCCACT 59.576 52.381 0.00 0.00 0.00 4.00
219 220 1.144298 ACCAAACCCTAACCACTCCAC 59.856 52.381 0.00 0.00 0.00 4.02
220 221 1.422402 GACCAAACCCTAACCACTCCA 59.578 52.381 0.00 0.00 0.00 3.86
221 222 1.271762 GGACCAAACCCTAACCACTCC 60.272 57.143 0.00 0.00 0.00 3.85
222 223 1.609841 CGGACCAAACCCTAACCACTC 60.610 57.143 0.00 0.00 0.00 3.51
223 224 0.399075 CGGACCAAACCCTAACCACT 59.601 55.000 0.00 0.00 0.00 4.00
224 225 0.607217 CCGGACCAAACCCTAACCAC 60.607 60.000 0.00 0.00 0.00 4.16
225 226 0.767446 TCCGGACCAAACCCTAACCA 60.767 55.000 0.00 0.00 0.00 3.67
226 227 0.401356 TTCCGGACCAAACCCTAACC 59.599 55.000 1.83 0.00 0.00 2.85
227 228 2.156917 CTTTCCGGACCAAACCCTAAC 58.843 52.381 1.83 0.00 0.00 2.34
228 229 1.546099 GCTTTCCGGACCAAACCCTAA 60.546 52.381 1.83 0.00 0.00 2.69
229 230 0.037160 GCTTTCCGGACCAAACCCTA 59.963 55.000 1.83 0.00 0.00 3.53
230 231 1.228459 GCTTTCCGGACCAAACCCT 60.228 57.895 1.83 0.00 0.00 4.34
231 232 2.622962 CGCTTTCCGGACCAAACCC 61.623 63.158 1.83 0.00 0.00 4.11
232 233 2.951458 CGCTTTCCGGACCAAACC 59.049 61.111 1.83 0.00 0.00 3.27
241 242 1.521423 GTCGTTATCATCCGCTTTCCG 59.479 52.381 0.00 0.00 0.00 4.30
242 243 1.865340 GGTCGTTATCATCCGCTTTCC 59.135 52.381 0.00 0.00 0.00 3.13
243 244 2.546778 TGGTCGTTATCATCCGCTTTC 58.453 47.619 0.00 0.00 0.00 2.62
244 245 2.684001 TGGTCGTTATCATCCGCTTT 57.316 45.000 0.00 0.00 0.00 3.51
245 246 2.910688 ATGGTCGTTATCATCCGCTT 57.089 45.000 0.00 0.00 0.00 4.68
246 247 3.258372 ACATATGGTCGTTATCATCCGCT 59.742 43.478 7.80 0.00 0.00 5.52
247 248 3.367932 CACATATGGTCGTTATCATCCGC 59.632 47.826 7.80 0.00 0.00 5.54
248 249 3.926527 CCACATATGGTCGTTATCATCCG 59.073 47.826 7.80 0.00 41.64 4.18
249 250 4.253685 CCCACATATGGTCGTTATCATCC 58.746 47.826 7.80 0.00 45.66 3.51
250 251 4.894784 ACCCACATATGGTCGTTATCATC 58.105 43.478 7.80 0.00 45.66 2.92
251 252 4.974645 ACCCACATATGGTCGTTATCAT 57.025 40.909 7.80 0.00 45.66 2.45
252 253 4.282449 CCTACCCACATATGGTCGTTATCA 59.718 45.833 7.80 0.00 45.66 2.15
253 254 4.322499 CCCTACCCACATATGGTCGTTATC 60.322 50.000 7.80 0.00 45.66 1.75
254 255 3.581332 CCCTACCCACATATGGTCGTTAT 59.419 47.826 7.80 0.00 45.66 1.89
255 256 2.967201 CCCTACCCACATATGGTCGTTA 59.033 50.000 7.80 0.00 45.66 3.18
256 257 1.766496 CCCTACCCACATATGGTCGTT 59.234 52.381 7.80 0.00 45.66 3.85
257 258 1.343681 ACCCTACCCACATATGGTCGT 60.344 52.381 7.80 2.10 45.66 4.34
258 259 1.420430 ACCCTACCCACATATGGTCG 58.580 55.000 7.80 0.00 45.66 4.79
259 260 3.853207 TCTACCCTACCCACATATGGTC 58.147 50.000 7.80 0.00 45.66 4.02
260 261 4.503685 ATCTACCCTACCCACATATGGT 57.496 45.455 7.80 0.00 45.66 3.55
261 262 4.019321 CCAATCTACCCTACCCACATATGG 60.019 50.000 7.80 0.00 46.81 2.74
262 263 4.565652 GCCAATCTACCCTACCCACATATG 60.566 50.000 0.00 0.00 0.00 1.78
263 264 3.587506 GCCAATCTACCCTACCCACATAT 59.412 47.826 0.00 0.00 0.00 1.78
264 265 2.976882 GCCAATCTACCCTACCCACATA 59.023 50.000 0.00 0.00 0.00 2.29
265 266 1.774856 GCCAATCTACCCTACCCACAT 59.225 52.381 0.00 0.00 0.00 3.21
266 267 1.209621 GCCAATCTACCCTACCCACA 58.790 55.000 0.00 0.00 0.00 4.17
267 268 0.106149 CGCCAATCTACCCTACCCAC 59.894 60.000 0.00 0.00 0.00 4.61
268 269 0.325860 ACGCCAATCTACCCTACCCA 60.326 55.000 0.00 0.00 0.00 4.51
269 270 1.617357 CTACGCCAATCTACCCTACCC 59.383 57.143 0.00 0.00 0.00 3.69
270 271 1.617357 CCTACGCCAATCTACCCTACC 59.383 57.143 0.00 0.00 0.00 3.18
271 272 1.000618 GCCTACGCCAATCTACCCTAC 59.999 57.143 0.00 0.00 0.00 3.18
272 273 1.335145 GCCTACGCCAATCTACCCTA 58.665 55.000 0.00 0.00 0.00 3.53
273 274 2.134092 GCCTACGCCAATCTACCCT 58.866 57.895 0.00 0.00 0.00 4.34
274 275 4.773209 GCCTACGCCAATCTACCC 57.227 61.111 0.00 0.00 0.00 3.69
284 285 2.585247 GTGTGATCGGGCCTACGC 60.585 66.667 0.84 0.00 0.00 4.42
285 286 2.278596 CGTGTGATCGGGCCTACG 60.279 66.667 0.84 0.00 0.00 3.51
286 287 1.518572 CACGTGTGATCGGGCCTAC 60.519 63.158 7.58 0.00 34.94 3.18
287 288 1.679641 TCACGTGTGATCGGGCCTA 60.680 57.895 16.51 0.00 34.14 3.93
288 289 2.994995 TCACGTGTGATCGGGCCT 60.995 61.111 16.51 0.00 34.14 5.19
289 290 2.813908 GTCACGTGTGATCGGGCC 60.814 66.667 16.51 0.00 42.18 5.80
320 321 1.468506 TATAGAATGGCTCGGGCGCA 61.469 55.000 10.83 0.00 39.81 6.09
321 322 0.108138 ATATAGAATGGCTCGGGCGC 60.108 55.000 0.00 0.00 39.81 6.53
323 324 1.471676 CGGATATAGAATGGCTCGGGC 60.472 57.143 0.00 0.00 37.82 6.13
324 325 1.471676 GCGGATATAGAATGGCTCGGG 60.472 57.143 0.00 0.00 0.00 5.14
325 326 1.204704 TGCGGATATAGAATGGCTCGG 59.795 52.381 0.00 0.00 0.00 4.63
326 327 2.094494 AGTGCGGATATAGAATGGCTCG 60.094 50.000 0.00 0.00 0.00 5.03
327 328 3.601443 AGTGCGGATATAGAATGGCTC 57.399 47.619 0.00 0.00 0.00 4.70
328 329 4.344978 TCTAGTGCGGATATAGAATGGCT 58.655 43.478 0.31 0.00 0.00 4.75
333 334 6.663953 AGCCTAAATCTAGTGCGGATATAGAA 59.336 38.462 6.04 0.00 0.00 2.10
334 335 6.095580 CAGCCTAAATCTAGTGCGGATATAGA 59.904 42.308 4.69 4.69 0.00 1.98
336 337 5.127194 CCAGCCTAAATCTAGTGCGGATATA 59.873 44.000 0.00 0.00 0.00 0.86
345 346 6.667414 CCTCTCATATCCAGCCTAAATCTAGT 59.333 42.308 0.00 0.00 0.00 2.57
354 355 1.055040 GCACCTCTCATATCCAGCCT 58.945 55.000 0.00 0.00 0.00 4.58
360 361 1.000283 CTGACCGGCACCTCTCATATC 60.000 57.143 0.00 0.00 0.00 1.63
381 382 0.672711 ACCGGCTTTAGACTTTCGGC 60.673 55.000 0.00 0.00 40.95 5.54
385 386 3.146847 CCTCAAACCGGCTTTAGACTTT 58.853 45.455 0.00 0.00 0.00 2.66
387 388 1.610886 GCCTCAAACCGGCTTTAGACT 60.611 52.381 0.00 0.00 44.17 3.24
390 391 1.794222 CGCCTCAAACCGGCTTTAG 59.206 57.895 0.00 0.00 45.37 1.85
392 393 3.670377 GCGCCTCAAACCGGCTTT 61.670 61.111 0.00 0.00 45.37 3.51
418 419 4.024641 ACTGACCGGTCAAAAATAAACGAC 60.025 41.667 35.36 5.97 39.39 4.34
456 457 3.068691 CCCTCTCGAACGCCCAGA 61.069 66.667 0.00 0.00 0.00 3.86
458 459 1.186917 TAAACCCTCTCGAACGCCCA 61.187 55.000 0.00 0.00 0.00 5.36
509 511 9.726438 GTCATGTGGTAATTAGGAGCTATTAAT 57.274 33.333 0.00 0.00 0.00 1.40
510 512 7.870954 CGTCATGTGGTAATTAGGAGCTATTAA 59.129 37.037 0.00 0.00 0.00 1.40
511 513 7.014905 ACGTCATGTGGTAATTAGGAGCTATTA 59.985 37.037 0.00 0.00 0.00 0.98
512 514 6.183360 ACGTCATGTGGTAATTAGGAGCTATT 60.183 38.462 0.00 0.00 0.00 1.73
513 515 5.304614 ACGTCATGTGGTAATTAGGAGCTAT 59.695 40.000 0.00 0.00 0.00 2.97
514 516 4.647853 ACGTCATGTGGTAATTAGGAGCTA 59.352 41.667 0.00 0.00 0.00 3.32
515 517 3.451178 ACGTCATGTGGTAATTAGGAGCT 59.549 43.478 0.00 0.00 0.00 4.09
554 556 6.215845 GGAGCTCTATTTTTGTTTGCTTTGA 58.784 36.000 14.64 0.00 0.00 2.69
559 561 4.519540 TGGGAGCTCTATTTTTGTTTGC 57.480 40.909 14.64 0.00 0.00 3.68
603 605 3.933955 CCGTCCGTGTAAACATTATTCCA 59.066 43.478 0.00 0.00 0.00 3.53
720 729 1.137825 CGACGGAGAGAGCTGTTCC 59.862 63.158 0.00 0.00 0.00 3.62
726 735 2.103340 GAAGCCGACGGAGAGAGC 59.897 66.667 20.50 0.00 0.00 4.09
728 737 2.754658 GGGAAGCCGACGGAGAGA 60.755 66.667 20.50 0.00 0.00 3.10
798 807 3.646637 AGGAGAGAAGAAAACGAGGGAAA 59.353 43.478 0.00 0.00 0.00 3.13
963 972 4.314440 GCAGCACCACCGAGTCCA 62.314 66.667 0.00 0.00 0.00 4.02
1394 1406 5.104982 TCAATGGTTCCCCAAATTATTCAGC 60.105 40.000 0.00 0.00 46.04 4.26
1412 1424 4.790766 GCGATGGAAGCTTAACATCAATGG 60.791 45.833 28.73 19.32 40.68 3.16
1529 1541 2.348888 AAATCTCCTCGCGGACCGT 61.349 57.895 16.73 0.00 38.35 4.83
1530 1542 1.878522 CAAATCTCCTCGCGGACCG 60.879 63.158 10.29 10.29 34.92 4.79
1531 1543 1.521681 CCAAATCTCCTCGCGGACC 60.522 63.158 6.13 0.00 34.92 4.46
1532 1544 1.521681 CCCAAATCTCCTCGCGGAC 60.522 63.158 6.13 0.00 34.92 4.79
1533 1545 2.731571 CCCCAAATCTCCTCGCGGA 61.732 63.158 6.13 0.00 37.82 5.54
1534 1546 2.203070 CCCCAAATCTCCTCGCGG 60.203 66.667 6.13 0.00 0.00 6.46
1535 1547 0.676782 AAACCCCAAATCTCCTCGCG 60.677 55.000 0.00 0.00 0.00 5.87
1536 1548 0.811281 CAAACCCCAAATCTCCTCGC 59.189 55.000 0.00 0.00 0.00 5.03
1560 1579 5.122707 TGCCATCCAAACATTACCTATCA 57.877 39.130 0.00 0.00 0.00 2.15
1593 1612 5.011023 GGAAGGATCAAGGAAAACAACATGT 59.989 40.000 0.00 0.00 0.00 3.21
1596 1615 3.895041 GGGAAGGATCAAGGAAAACAACA 59.105 43.478 0.00 0.00 0.00 3.33
1609 1628 0.254178 TCAAGCAGCTGGGAAGGATC 59.746 55.000 17.12 0.00 0.00 3.36
1690 1710 8.993121 CCGATTCTACAAAGTATCAAATGCTAT 58.007 33.333 0.00 0.00 30.94 2.97
1875 1898 4.763793 ACTACATGAGCAGCAATTTCAGTT 59.236 37.500 0.00 0.00 0.00 3.16
1878 1901 7.395190 AATTACTACATGAGCAGCAATTTCA 57.605 32.000 0.00 0.00 0.00 2.69
1999 2022 7.878495 ACTATGGGGAAGTAACCATCATAAAA 58.122 34.615 0.00 0.00 43.84 1.52
2000 2023 7.460214 ACTATGGGGAAGTAACCATCATAAA 57.540 36.000 0.00 0.00 43.84 1.40
2099 2122 9.868277 ACTCAGAATCTCTCTAAAATAACACAG 57.132 33.333 0.00 0.00 31.12 3.66
2238 2261 7.360361 ACAAAGATAAAAGAAAACCTAGTGCG 58.640 34.615 0.00 0.00 0.00 5.34
2254 2277 5.006261 CCGCACGATCACAATACAAAGATAA 59.994 40.000 0.00 0.00 0.00 1.75
2273 2296 0.527565 AAATGGACAGCAATCCGCAC 59.472 50.000 2.15 0.00 46.13 5.34
2401 2424 7.231925 TGGCATATGCAAATAACAGATCTCAAT 59.768 33.333 28.07 0.00 44.36 2.57
2591 2615 3.110705 TCCTAGCAGCTTTTCCAGAGAT 58.889 45.455 0.00 0.00 0.00 2.75
2982 3012 1.279496 TGAATAGGCAGCACTCCTGT 58.721 50.000 0.00 0.00 43.71 4.00
3372 3402 0.721154 CGAGCTTAGCATTTCGCACA 59.279 50.000 7.07 0.00 46.13 4.57
3462 3492 6.902341 TGCAAGAACTAGAAAATTACAGCAG 58.098 36.000 0.00 0.00 0.00 4.24
3539 3571 6.591448 ACAAAAGGCTGCTTAGATTAAAATGC 59.409 34.615 0.00 0.00 0.00 3.56
3576 3608 4.739046 AGATTTTCAAGTTCTGTCTGCG 57.261 40.909 0.00 0.00 0.00 5.18
3741 3773 4.283722 TCTTCAGTTAACTCCCTCACCTTC 59.716 45.833 4.77 0.00 0.00 3.46
4047 4084 4.201724 GCAGAACGACAAAGACCATATGAC 60.202 45.833 3.65 0.00 0.00 3.06
4322 4375 7.804843 AATGAATATGCCTCAAAGAGAAGAG 57.195 36.000 0.00 0.00 0.00 2.85
4383 4436 8.359642 TCCATGTTTTCCTCAAATTTACTGAAG 58.640 33.333 0.00 0.00 0.00 3.02
4386 4439 8.359642 TCTTCCATGTTTTCCTCAAATTTACTG 58.640 33.333 0.00 0.00 0.00 2.74
4627 4683 6.932356 AAGTTCATATCGACTTGCATCAAT 57.068 33.333 0.00 0.00 34.96 2.57
4703 4760 2.473984 GTCCGGTGTACTTTTCAGTTCG 59.526 50.000 0.00 0.00 34.06 3.95
4804 4861 6.429385 ACAAAGATCAAGAGTCCAAGAACATC 59.571 38.462 0.00 0.00 0.00 3.06
4807 4864 6.931840 AGTACAAAGATCAAGAGTCCAAGAAC 59.068 38.462 0.00 0.00 0.00 3.01
4839 4900 6.924111 ACTGTTATTGCTACCAGAAAAATGG 58.076 36.000 0.00 0.00 46.47 3.16
4842 4903 7.722285 AGGTTACTGTTATTGCTACCAGAAAAA 59.278 33.333 0.00 0.00 0.00 1.94
4843 4904 7.228590 AGGTTACTGTTATTGCTACCAGAAAA 58.771 34.615 0.00 0.00 0.00 2.29
5014 5075 4.635223 TCCACATATCTGTAATGCTGCTC 58.365 43.478 0.00 0.00 33.14 4.26
5119 5180 4.136796 TGCACTTCTGCTGTTCATTAGTT 58.863 39.130 0.00 0.00 44.57 2.24
5196 5257 1.737793 GATTTACCGACAACTGCTGGG 59.262 52.381 0.00 0.00 0.00 4.45
5217 5278 1.675641 GGTTGGGCCTACAGCTGTG 60.676 63.158 29.57 17.91 43.05 3.66
5252 5313 3.634910 TGTTCCAGAATGCCATCATCATG 59.365 43.478 0.00 0.00 31.97 3.07
5261 5322 2.508526 ACTCTGTTGTTCCAGAATGCC 58.491 47.619 0.00 0.00 40.78 4.40
5262 5323 3.364366 CGAACTCTGTTGTTCCAGAATGC 60.364 47.826 0.00 0.00 42.22 3.56
5299 5363 4.026356 AGAGTCCCAGGAAGAACATTTG 57.974 45.455 0.00 0.00 0.00 2.32
5346 5410 1.066908 CTGCCAGAAAGGACGCAAAAA 59.933 47.619 0.00 0.00 41.22 1.94
5466 5530 1.394917 GCGGCAGACTGATAACACAAG 59.605 52.381 6.65 0.00 0.00 3.16
5473 5537 0.179100 GCTCAAGCGGCAGACTGATA 60.179 55.000 6.65 0.00 0.00 2.15
5543 5607 1.130054 TGCAGAGGAAGAACCAGGCT 61.130 55.000 0.00 0.00 42.04 4.58
5584 5648 4.817464 AGCCATTGTACTTTTTACACGTCA 59.183 37.500 0.00 0.00 0.00 4.35
5593 5657 7.172342 TGGTATAAGTCAGCCATTGTACTTTT 58.828 34.615 0.00 0.00 32.83 2.27
5657 5721 4.917385 TGGCCTTTAAACTCTTCTGCATA 58.083 39.130 3.32 0.00 0.00 3.14
5673 5737 1.279846 CAATGCTTGGGAAATGGCCTT 59.720 47.619 3.32 0.00 0.00 4.35
5677 5741 2.568509 ACCTTCAATGCTTGGGAAATGG 59.431 45.455 0.00 0.00 0.00 3.16
5744 5811 7.890515 ACAAACTAGTACTAGTAACTGGGAAC 58.109 38.462 30.89 0.00 44.96 3.62
5819 5889 7.034685 AGTACGATTTTGCCTACTTGTTTTT 57.965 32.000 0.00 0.00 0.00 1.94
5883 5953 1.368641 GTAGTTCATGCATCACGCCA 58.631 50.000 0.00 0.00 41.33 5.69
5896 5966 1.593196 TGTGCACTTGCTGGTAGTTC 58.407 50.000 19.41 0.00 42.66 3.01
5897 5967 2.154462 GATGTGCACTTGCTGGTAGTT 58.846 47.619 19.41 0.00 42.66 2.24
6146 6217 4.454504 ACAAAATTCTTAATCGCAGACGGT 59.545 37.500 0.00 0.00 42.51 4.83
6154 6225 5.942872 AGCTGGTCACAAAATTCTTAATCG 58.057 37.500 0.00 0.00 0.00 3.34
6164 6235 1.865865 GACTCGAGCTGGTCACAAAA 58.134 50.000 13.61 0.00 33.19 2.44
6188 6259 2.830321 ACTAACTAAACCACTCCCCGAG 59.170 50.000 0.00 0.00 35.52 4.63
6189 6260 2.893424 ACTAACTAAACCACTCCCCGA 58.107 47.619 0.00 0.00 0.00 5.14
6190 6261 3.429960 GCTACTAACTAAACCACTCCCCG 60.430 52.174 0.00 0.00 0.00 5.73
6191 6262 3.773667 AGCTACTAACTAAACCACTCCCC 59.226 47.826 0.00 0.00 0.00 4.81
6192 6263 4.710865 AGAGCTACTAACTAAACCACTCCC 59.289 45.833 0.00 0.00 0.00 4.30
6193 6264 5.418209 TCAGAGCTACTAACTAAACCACTCC 59.582 44.000 0.00 0.00 0.00 3.85
6194 6265 6.324042 GTCAGAGCTACTAACTAAACCACTC 58.676 44.000 0.00 0.00 0.00 3.51
6195 6266 5.185442 GGTCAGAGCTACTAACTAAACCACT 59.815 44.000 0.00 0.00 0.00 4.00
6196 6267 5.185442 AGGTCAGAGCTACTAACTAAACCAC 59.815 44.000 0.00 0.00 0.00 4.16
6197 6268 5.331069 AGGTCAGAGCTACTAACTAAACCA 58.669 41.667 0.00 0.00 0.00 3.67
6198 6269 5.918426 AGGTCAGAGCTACTAACTAAACC 57.082 43.478 0.00 0.00 0.00 3.27
6199 6270 5.577554 GCAAGGTCAGAGCTACTAACTAAAC 59.422 44.000 1.60 0.00 0.00 2.01
6200 6271 5.337330 GGCAAGGTCAGAGCTACTAACTAAA 60.337 44.000 1.60 0.00 0.00 1.85
6201 6272 4.159879 GGCAAGGTCAGAGCTACTAACTAA 59.840 45.833 1.60 0.00 0.00 2.24
6202 6273 3.700038 GGCAAGGTCAGAGCTACTAACTA 59.300 47.826 1.60 0.00 0.00 2.24
6203 6274 2.498078 GGCAAGGTCAGAGCTACTAACT 59.502 50.000 1.60 0.00 0.00 2.24
6204 6275 2.735762 CGGCAAGGTCAGAGCTACTAAC 60.736 54.545 1.60 0.00 0.00 2.34
6205 6276 1.476891 CGGCAAGGTCAGAGCTACTAA 59.523 52.381 1.60 0.00 0.00 2.24
6206 6277 1.103803 CGGCAAGGTCAGAGCTACTA 58.896 55.000 1.60 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.