AutoCloner

Multiple sequence alignment - TraesCS2B01G313500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G313500	chr2B	100.000	2794	0	0	1	2794	448872140	448874933	0.000000e+00	5160.0
1	TraesCS2B01G313500	chr2B	80.078	256	29	5	1665	1904	13813801	13814050	1.330000e-38	171.0
2	TraesCS2B01G313500	chr2A	93.082	2096	90	12	730	2794	511115678	511117749	0.000000e+00	3016.0
3	TraesCS2B01G313500	chr2D	92.568	2126	78	16	700	2794	377157180	377159256	0.000000e+00	2977.0
4	TraesCS2B01G313500	chr2D	91.165	532	45	2	1	531	54200476	54199946	0.000000e+00	721.0
5	TraesCS2B01G313500	chr2D	96.429	112	4	0	569	680	54199955	54199844	4.750000e-43	185.0
6	TraesCS2B01G313500	chr3B	95.685	533	19	4	1	531	558516062	558515532	0.000000e+00	854.0
7	TraesCS2B01G313500	chr3B	97.414	116	3	0	565	680	558515545	558515430	6.100000e-47	198.0
8	TraesCS2B01G313500	chr3B	97.368	38	0	1	532	568	661557566	661557603	2.320000e-06	63.9
9	TraesCS2B01G313500	chr7B	95.076	528	23	3	4	531	64784147	64783623	0.000000e+00	828.0
10	TraesCS2B01G313500	chr7B	94.737	114	6	0	565	678	64783636	64783523	7.950000e-41	178.0
11	TraesCS2B01G313500	chr6B	93.797	532	31	2	1	531	478457786	478458316	0.000000e+00	798.0
12	TraesCS2B01G313500	chr6B	99.130	115	1	0	565	679	478458303	478458417	1.010000e-49	207.0
13	TraesCS2B01G313500	chr5B	93.797	532	30	3	1	531	496514970	496515499	0.000000e+00	797.0
14	TraesCS2B01G313500	chr5B	99.138	116	1	0	565	680	496515486	496515601	2.820000e-50	209.0
15	TraesCS2B01G313500	chr5B	100.000	37	0	0	532	568	575247147	575247111	4.990000e-08	69.4
16	TraesCS2B01G313500	chr4A	93.246	533	32	4	1	531	660237825	660237295	0.000000e+00	782.0
17	TraesCS2B01G313500	chr4A	99.130	115	1	0	565	679	660237308	660237194	1.010000e-49	207.0
18	TraesCS2B01G313500	chr6A	92.105	532	40	2	1	531	102875315	102874785	0.000000e+00	749.0
19	TraesCS2B01G313500	chr6A	98.214	112	2	0	569	680	102874794	102874683	2.200000e-46	196.0
20	TraesCS2B01G313500	chr1A	91.871	529	41	2	1	528	237708138	237708665	0.000000e+00	737.0
21	TraesCS2B01G313500	chr1A	94.783	115	6	0	566	680	237708656	237708770	2.210000e-41	180.0
22	TraesCS2B01G313500	chr6D	90.114	526	50	2	1	525	221537522	221538046	0.000000e+00	682.0
23	TraesCS2B01G313500	chr7D	98.077	104	2	0	577	680	227555721	227555618	6.150000e-42	182.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G313500	chr2B	448872140	448874933	2793	False	5160.0	5160	100.0000	1	2794	1	chr2B.!!$F2	2793
1	TraesCS2B01G313500	chr2A	511115678	511117749	2071	False	3016.0	3016	93.0820	730	2794	1	chr2A.!!$F1	2064
2	TraesCS2B01G313500	chr2D	377157180	377159256	2076	False	2977.0	2977	92.5680	700	2794	1	chr2D.!!$F1	2094
3	TraesCS2B01G313500	chr2D	54199844	54200476	632	True	453.0	721	93.7970	1	680	2	chr2D.!!$R1	679
4	TraesCS2B01G313500	chr3B	558515430	558516062	632	True	526.0	854	96.5495	1	680	2	chr3B.!!$R1	679
5	TraesCS2B01G313500	chr7B	64783523	64784147	624	True	503.0	828	94.9065	4	678	2	chr7B.!!$R1	674
6	TraesCS2B01G313500	chr6B	478457786	478458417	631	False	502.5	798	96.4635	1	679	2	chr6B.!!$F1	678
7	TraesCS2B01G313500	chr5B	496514970	496515601	631	False	503.0	797	96.4675	1	680	2	chr5B.!!$F1	679
8	TraesCS2B01G313500	chr4A	660237194	660237825	631	True	494.5	782	96.1880	1	679	2	chr4A.!!$R1	678
9	TraesCS2B01G313500	chr6A	102874683	102875315	632	True	472.5	749	95.1595	1	680	2	chr6A.!!$R1	679
10	TraesCS2B01G313500	chr1A	237708138	237708770	632	False	458.5	737	93.3270	1	680	2	chr1A.!!$F1	679
11	TraesCS2B01G313500	chr6D	221537522	221538046	524	False	682.0	682	90.1140	1	525	1	chr6D.!!$F1	524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
524	527	0.034616	CTGAGCATCCCGATCCCTTC	59.965	60.0	0.0	0.0	0.0	3.46	F
1500	1542	0.175760	GCTACCTCCTCATCAACGCA	59.824	55.0	0.0	0.0	0.0	5.24	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1561	1603	0.039437	TGACCAGCTCGAGTCGAAAC	60.039	55.0	17.27	11.63	34.74	2.78	R
2450	2499	0.526211	GTTCGTTTCTTGGGGATGGC	59.474	55.0	0.00	0.00	0.00	4.40	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
52	54	2.254152	TCATCTGGCTAGTCACCCTT	57.746	50.000	0.00	0.00	0.00	3.95
125	128	2.520069	CTACCTGTGTCCTCTGTGACT	58.480	52.381	0.00	0.00	36.21	3.41
134	137	1.993301	TCCTCTGTGACTAGACCCTCA	59.007	52.381	0.00	0.00	0.00	3.86
371	374	2.676822	TGCTCTTCGACTCCGCCT	60.677	61.111	0.00	0.00	35.37	5.52
446	449	2.041508	TGGCTGGGGCTAGAGGAG	60.042	66.667	0.00	0.00	38.73	3.69
472	475	0.740737	CGATCACCCAATTTGAGCCC	59.259	55.000	0.00	0.00	0.00	5.19
520	523	2.031768	GGCTGAGCATCCCGATCC	59.968	66.667	6.82	0.00	0.00	3.36
521	524	2.031768	GCTGAGCATCCCGATCCC	59.968	66.667	0.00	0.00	0.00	3.85
522	525	2.515071	GCTGAGCATCCCGATCCCT	61.515	63.158	0.00	0.00	0.00	4.20
523	526	2.049627	GCTGAGCATCCCGATCCCTT	62.050	60.000	0.00	0.00	0.00	3.95
524	527	0.034616	CTGAGCATCCCGATCCCTTC	59.965	60.000	0.00	0.00	0.00	3.46
525	528	1.373059	GAGCATCCCGATCCCTTCC	59.627	63.158	0.00	0.00	0.00	3.46
526	529	1.074167	AGCATCCCGATCCCTTCCT	60.074	57.895	0.00	0.00	0.00	3.36
527	530	0.191064	AGCATCCCGATCCCTTCCTA	59.809	55.000	0.00	0.00	0.00	2.94
528	531	1.203364	AGCATCCCGATCCCTTCCTAT	60.203	52.381	0.00	0.00	0.00	2.57
529	532	1.630878	GCATCCCGATCCCTTCCTATT	59.369	52.381	0.00	0.00	0.00	1.73
530	533	2.355209	GCATCCCGATCCCTTCCTATTC	60.355	54.545	0.00	0.00	0.00	1.75
531	534	3.177228	CATCCCGATCCCTTCCTATTCT	58.823	50.000	0.00	0.00	0.00	2.40
532	535	3.346146	TCCCGATCCCTTCCTATTCTT	57.654	47.619	0.00	0.00	0.00	2.52
533	536	3.665443	TCCCGATCCCTTCCTATTCTTT	58.335	45.455	0.00	0.00	0.00	2.52
534	537	4.045022	TCCCGATCCCTTCCTATTCTTTT	58.955	43.478	0.00	0.00	0.00	2.27
535	538	4.477213	TCCCGATCCCTTCCTATTCTTTTT	59.523	41.667	0.00	0.00	0.00	1.94
561	564	9.877178	TTTTAGACAAACCAAGCTTTTTATTCA	57.123	25.926	0.00	0.00	0.00	2.57
623	626	2.897326	GTTGGAGTTTGTAATTGGGCCT	59.103	45.455	4.53	0.00	0.00	5.19
692	695	5.261370	CGTATTCGCGTAGACATACTAGT	57.739	43.478	11.03	0.00	0.00	2.57
693	696	6.381465	CGTATTCGCGTAGACATACTAGTA	57.619	41.667	11.03	4.77	0.00	1.82
694	697	6.229945	CGTATTCGCGTAGACATACTAGTAC	58.770	44.000	11.03	0.00	0.00	2.73
695	698	4.698947	TTCGCGTAGACATACTAGTACG	57.301	45.455	5.77	7.00	33.08	3.67
696	699	3.706698	TCGCGTAGACATACTAGTACGT	58.293	45.455	5.77	2.26	32.68	3.57
697	700	4.855531	TCGCGTAGACATACTAGTACGTA	58.144	43.478	5.77	0.00	32.68	3.57
698	701	4.675565	TCGCGTAGACATACTAGTACGTAC	59.324	45.833	18.10	18.10	32.68	3.67
739	742	1.730547	GCAATGAGCAACACACCGC	60.731	57.895	0.00	0.00	44.79	5.68
833	839	3.818787	GCACATCAGCCCAAGCCG	61.819	66.667	0.00	0.00	41.25	5.52
874	880	3.620427	TCGCATACAACACCCAGTAAT	57.380	42.857	0.00	0.00	0.00	1.89
914	920	3.235200	CCCGATTCCTATCTCTTCCTGT	58.765	50.000	0.00	0.00	0.00	4.00
916	922	3.891977	CCGATTCCTATCTCTTCCTGTCA	59.108	47.826	0.00	0.00	0.00	3.58
997	1003	1.811266	CCAATCGTCCGTGCTCCAG	60.811	63.158	0.00	0.00	0.00	3.86
1079	1085	3.286751	CCACCGCAACCACCAGTG	61.287	66.667	0.00	0.00	0.00	3.66
1173	1188	0.250513	CGGAAACCAAGGAGGAGGAG	59.749	60.000	0.00	0.00	41.22	3.69
1243	1258	2.492484	CTCTGGAAGGTAAGCACGTACT	59.508	50.000	0.00	0.00	0.00	2.73
1313	1331	0.859232	ACGTGAACTGAATCGTGTGC	59.141	50.000	0.00	0.00	35.24	4.57
1316	1334	0.948623	TGAACTGAATCGTGTGCCGG	60.949	55.000	0.00	0.00	37.11	6.13
1500	1542	0.175760	GCTACCTCCTCATCAACGCA	59.824	55.000	0.00	0.00	0.00	5.24
1543	1585	1.103803	CGGCAAGGTCAGAGCTACTA	58.896	55.000	1.60	0.00	0.00	1.82
1544	1586	1.476891	CGGCAAGGTCAGAGCTACTAA	59.523	52.381	1.60	0.00	0.00	2.24
1545	1587	2.735762	CGGCAAGGTCAGAGCTACTAAC	60.736	54.545	1.60	0.00	0.00	2.34
1546	1588	2.498078	GGCAAGGTCAGAGCTACTAACT	59.502	50.000	1.60	0.00	0.00	2.24
1547	1589	3.700038	GGCAAGGTCAGAGCTACTAACTA	59.300	47.826	1.60	0.00	0.00	2.24
1548	1590	4.159879	GGCAAGGTCAGAGCTACTAACTAA	59.840	45.833	1.60	0.00	0.00	2.24
1549	1591	5.337330	GGCAAGGTCAGAGCTACTAACTAAA	60.337	44.000	1.60	0.00	0.00	1.85
1550	1592	5.577554	GCAAGGTCAGAGCTACTAACTAAAC	59.422	44.000	1.60	0.00	0.00	2.01
1551	1593	5.918426	AGGTCAGAGCTACTAACTAAACC	57.082	43.478	0.00	0.00	0.00	3.27
1552	1594	5.331069	AGGTCAGAGCTACTAACTAAACCA	58.669	41.667	0.00	0.00	0.00	3.67
1553	1595	5.185442	AGGTCAGAGCTACTAACTAAACCAC	59.815	44.000	0.00	0.00	0.00	4.16
1554	1596	5.185442	GGTCAGAGCTACTAACTAAACCACT	59.815	44.000	0.00	0.00	0.00	4.00
1555	1597	6.324042	GTCAGAGCTACTAACTAAACCACTC	58.676	44.000	0.00	0.00	0.00	3.51
1556	1598	5.418209	TCAGAGCTACTAACTAAACCACTCC	59.582	44.000	0.00	0.00	0.00	3.85
1557	1599	4.710865	AGAGCTACTAACTAAACCACTCCC	59.289	45.833	0.00	0.00	0.00	4.30
1558	1600	3.773667	AGCTACTAACTAAACCACTCCCC	59.226	47.826	0.00	0.00	0.00	4.81
1559	1601	3.429960	GCTACTAACTAAACCACTCCCCG	60.430	52.174	0.00	0.00	0.00	5.73
1560	1602	2.893424	ACTAACTAAACCACTCCCCGA	58.107	47.619	0.00	0.00	0.00	5.14
1561	1603	2.830321	ACTAACTAAACCACTCCCCGAG	59.170	50.000	0.00	0.00	35.52	4.63
1585	1627	1.865865	GACTCGAGCTGGTCACAAAA	58.134	50.000	13.61	0.00	33.19	2.44
1595	1637	5.942872	AGCTGGTCACAAAATTCTTAATCG	58.057	37.500	0.00	0.00	0.00	3.34
1603	1645	4.454504	ACAAAATTCTTAATCGCAGACGGT	59.545	37.500	0.00	0.00	42.51	4.83
1852	1895	2.154462	GATGTGCACTTGCTGGTAGTT	58.846	47.619	19.41	0.00	42.66	2.24
1853	1896	1.593196	TGTGCACTTGCTGGTAGTTC	58.407	50.000	19.41	0.00	42.66	3.01
1866	1909	1.368641	GTAGTTCATGCATCACGCCA	58.631	50.000	0.00	0.00	41.33	5.69
1930	1973	7.034685	AGTACGATTTTGCCTACTTGTTTTT	57.965	32.000	0.00	0.00	0.00	1.94
2005	2051	7.890515	ACAAACTAGTACTAGTAACTGGGAAC	58.109	38.462	30.89	0.00	44.96	3.62
2072	2121	2.568509	ACCTTCAATGCTTGGGAAATGG	59.431	45.455	0.00	0.00	0.00	3.16
2076	2125	1.279846	CAATGCTTGGGAAATGGCCTT	59.720	47.619	3.32	0.00	0.00	4.35
2092	2141	4.917385	TGGCCTTTAAACTCTTCTGCATA	58.083	39.130	3.32	0.00	0.00	3.14
2156	2205	7.172342	TGGTATAAGTCAGCCATTGTACTTTT	58.828	34.615	0.00	0.00	32.83	2.27
2165	2214	4.817464	AGCCATTGTACTTTTTACACGTCA	59.183	37.500	0.00	0.00	0.00	4.35
2206	2255	1.130054	TGCAGAGGAAGAACCAGGCT	61.130	55.000	0.00	0.00	42.04	4.58
2276	2325	0.179100	GCTCAAGCGGCAGACTGATA	60.179	55.000	6.65	0.00	0.00	2.15
2283	2332	1.394917	GCGGCAGACTGATAACACAAG	59.605	52.381	6.65	0.00	0.00	3.16
2401	2450	0.465460	ACTGCCAGAAAGGACGCAAA	60.465	50.000	0.00	0.00	41.22	3.68
2450	2499	4.026356	AGAGTCCCAGGAAGAACATTTG	57.974	45.455	0.00	0.00	0.00	2.32
2487	2536	3.364366	CGAACTCTGTTGTTCCAGAATGC	60.364	47.826	0.00	0.00	42.22	3.56
2497	2549	3.634910	TGTTCCAGAATGCCATCATCATG	59.365	43.478	0.00	0.00	31.97	3.07
2532	2584	1.675641	GGTTGGGCCTACAGCTGTG	60.676	63.158	29.57	17.91	43.05	3.66
2553	2605	1.737793	GATTTACCGACAACTGCTGGG	59.262	52.381	0.00	0.00	0.00	4.45
2630	2682	4.136796	TGCACTTCTGCTGTTCATTAGTT	58.863	39.130	0.00	0.00	44.57	2.24
2735	2787	4.635223	TCCACATATCTGTAATGCTGCTC	58.365	43.478	0.00	0.00	33.14	4.26

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
52	54	4.980805	GCGGTCCAGCAACGGTCA	62.981	66.667	1.46	0.00	37.05	4.02
125	128	2.286872	GTCGATCGTCTTGAGGGTCTA	58.713	52.381	15.94	0.00	0.00	2.59
134	137	0.323542	AGGAGGTGGTCGATCGTCTT	60.324	55.000	15.94	0.00	0.00	3.01
446	449	0.814010	AATTGGGTGATCGCGGCTAC	60.814	55.000	6.13	2.34	0.00	3.58
535	538	9.877178	TGAATAAAAAGCTTGGTTTGTCTAAAA	57.123	25.926	0.00	0.00	0.00	1.52
541	544	9.435688	GGATTATGAATAAAAAGCTTGGTTTGT	57.564	29.630	0.00	0.00	0.00	2.83
542	545	8.882736	GGGATTATGAATAAAAAGCTTGGTTTG	58.117	33.333	0.00	0.00	0.00	2.93
543	546	8.825774	AGGGATTATGAATAAAAAGCTTGGTTT	58.174	29.630	0.00	0.00	0.00	3.27
544	547	8.379428	AGGGATTATGAATAAAAAGCTTGGTT	57.621	30.769	0.00	0.00	0.00	3.67
545	548	7.978099	AGGGATTATGAATAAAAAGCTTGGT	57.022	32.000	0.00	0.00	0.00	3.67
546	549	7.928167	GGAAGGGATTATGAATAAAAAGCTTGG	59.072	37.037	0.00	0.00	0.00	3.61
547	550	8.699130	AGGAAGGGATTATGAATAAAAAGCTTG	58.301	33.333	0.00	0.00	0.00	4.01
548	551	8.844865	AGGAAGGGATTATGAATAAAAAGCTT	57.155	30.769	0.00	0.00	0.00	3.74
557	560	8.997301	ACTAGGAATAGGAAGGGATTATGAAT	57.003	34.615	0.00	0.00	0.00	2.57
558	561	8.660435	CAACTAGGAATAGGAAGGGATTATGAA	58.340	37.037	0.00	0.00	0.00	2.57
559	562	7.256691	GCAACTAGGAATAGGAAGGGATTATGA	60.257	40.741	0.00	0.00	0.00	2.15
560	563	6.881602	GCAACTAGGAATAGGAAGGGATTATG	59.118	42.308	0.00	0.00	0.00	1.90
561	564	6.562608	TGCAACTAGGAATAGGAAGGGATTAT	59.437	38.462	0.00	0.00	0.00	1.28
562	565	5.908831	TGCAACTAGGAATAGGAAGGGATTA	59.091	40.000	0.00	0.00	0.00	1.75
563	566	4.726825	TGCAACTAGGAATAGGAAGGGATT	59.273	41.667	0.00	0.00	0.00	3.01
623	626	7.396339	TGATAGGTAGAAAGCAAGAGTTACAGA	59.604	37.037	0.00	0.00	0.00	3.41
689	692	8.017373	CACTTTTGTTGCTACTAGTACGTACTA	58.983	37.037	28.76	28.76	37.73	1.82
690	693	6.860023	CACTTTTGTTGCTACTAGTACGTACT	59.140	38.462	29.62	29.62	40.24	2.73
691	694	6.638468	ACACTTTTGTTGCTACTAGTACGTAC	59.362	38.462	18.10	18.10	28.43	3.67
692	695	6.738114	ACACTTTTGTTGCTACTAGTACGTA	58.262	36.000	0.00	0.00	28.43	3.57
693	696	5.594926	ACACTTTTGTTGCTACTAGTACGT	58.405	37.500	0.00	0.00	28.43	3.57
694	697	7.627585	TTACACTTTTGTTGCTACTAGTACG	57.372	36.000	0.00	0.00	37.15	3.67
695	698	9.859692	CTTTTACACTTTTGTTGCTACTAGTAC	57.140	33.333	0.00	0.00	37.15	2.73
696	699	8.553696	GCTTTTACACTTTTGTTGCTACTAGTA	58.446	33.333	1.89	1.89	37.15	1.82
697	700	7.066525	TGCTTTTACACTTTTGTTGCTACTAGT	59.933	33.333	0.00	0.00	37.15	2.57
698	701	7.414436	TGCTTTTACACTTTTGTTGCTACTAG	58.586	34.615	0.00	0.00	37.15	2.57
701	704	6.879188	TTGCTTTTACACTTTTGTTGCTAC	57.121	33.333	0.00	0.00	37.15	3.58
705	708	6.035866	TGCTCATTGCTTTTACACTTTTGTTG	59.964	34.615	0.00	0.00	43.37	3.33
833	839	1.663074	GACGGCTGAGATCGATGCC	60.663	63.158	13.17	13.17	41.76	4.40
874	880	1.222387	GCCGCCAGGTGGTACAATA	59.778	57.895	20.87	0.00	44.16	1.90
972	978	1.144057	ACGGACGATTGGATGGAGC	59.856	57.895	0.00	0.00	0.00	4.70
1243	1258	2.820728	TACTAGTAGGCTGCAGTGGA	57.179	50.000	16.64	0.00	0.00	4.02
1313	1331	2.542907	AAGCAAACACGTCAGCCGG	61.543	57.895	0.00	0.00	42.24	6.13
1316	1334	0.248621	AAGCAAGCAAACACGTCAGC	60.249	50.000	0.00	0.00	0.00	4.26
1543	1585	1.725803	ACTCGGGGAGTGGTTTAGTT	58.274	50.000	0.00	0.00	41.76	2.24
1544	1586	1.725803	AACTCGGGGAGTGGTTTAGT	58.274	50.000	0.00	0.00	42.59	2.24
1545	1587	2.696506	GAAACTCGGGGAGTGGTTTAG	58.303	52.381	0.00	0.00	42.59	1.85
1546	1588	1.001181	CGAAACTCGGGGAGTGGTTTA	59.999	52.381	0.00	0.00	42.59	2.01
1547	1589	0.250166	CGAAACTCGGGGAGTGGTTT	60.250	55.000	0.00	0.00	42.59	3.27
1548	1590	1.117142	TCGAAACTCGGGGAGTGGTT	61.117	55.000	0.00	0.00	42.59	3.67
1549	1591	1.532316	TCGAAACTCGGGGAGTGGT	60.532	57.895	0.00	0.00	42.59	4.16
1550	1592	1.080025	GTCGAAACTCGGGGAGTGG	60.080	63.158	0.00	0.00	42.59	4.00
1551	1593	0.109226	GAGTCGAAACTCGGGGAGTG	60.109	60.000	0.00	0.00	42.59	3.51
1552	1594	2.265096	GAGTCGAAACTCGGGGAGT	58.735	57.895	0.00	0.00	45.64	3.85
1560	1602	0.241481	GACCAGCTCGAGTCGAAACT	59.759	55.000	17.27	13.77	38.88	2.66
1561	1603	0.039437	TGACCAGCTCGAGTCGAAAC	60.039	55.000	17.27	11.63	34.74	2.78
1585	1627	2.093658	ACCACCGTCTGCGATTAAGAAT	60.094	45.455	0.00	0.00	41.33	2.40
1595	1637	0.248458	CAAACACAACCACCGTCTGC	60.248	55.000	0.00	0.00	0.00	4.26
1603	1645	9.197694	GCATTTATATTACAACAAACACAACCA	57.802	29.630	0.00	0.00	0.00	3.67
1664	1707	2.398554	CGCGAATGTCCCCACCTTG	61.399	63.158	0.00	0.00	0.00	3.61
1812	1855	4.913335	TCGATCGAAGTGCCTATACTTT	57.087	40.909	16.99	0.00	40.78	2.66
1930	1973	6.800543	TGTTTTACAAGAGCAGCAAACATAA	58.199	32.000	0.00	0.00	31.00	1.90
2072	2121	6.743575	TTCTATGCAGAAGAGTTTAAAGGC	57.256	37.500	0.00	0.00	35.82	4.35
2156	2205	6.399743	TGTAAATATTCTGGCTGACGTGTAA	58.600	36.000	0.00	0.00	0.00	2.41
2165	2214	6.014669	TGCAAAAACCTGTAAATATTCTGGCT	60.015	34.615	0.00	0.00	0.00	4.75
2217	2266	3.217626	CAACTGGATTCCCCTGATAAGC	58.782	50.000	0.00	0.00	37.33	3.09
2276	2325	5.386958	TTGAGTCGCTAGTATCTTGTGTT	57.613	39.130	0.00	0.00	0.00	3.32
2283	2332	6.737301	CGTATGTACATTGAGTCGCTAGTATC	59.263	42.308	14.77	0.00	0.00	2.24
2401	2450	5.086621	AGGCTGGTGATTTCTACCAAATTT	58.913	37.500	0.00	0.00	46.81	1.82
2450	2499	0.526211	GTTCGTTTCTTGGGGATGGC	59.474	55.000	0.00	0.00	0.00	4.40
2487	2536	5.824097	TGGATAGACAACAACATGATGATGG	59.176	40.000	15.87	5.30	33.39	3.51
2497	2549	4.749245	CAACCTGTGGATAGACAACAAC	57.251	45.455	0.00	0.00	0.00	3.32
2532	2584	1.737793	CCAGCAGTTGTCGGTAAATCC	59.262	52.381	0.00	0.00	0.00	3.01
2553	2605	3.964875	CGCACACCCCAGCAACAC	61.965	66.667	0.00	0.00	0.00	3.32
2577	2629	4.802248	CAGTTCTTAGCTGAAGAGGCAACT	60.802	45.833	0.00	0.11	45.05	3.16
2630	2682	6.099269	ACCTGACCTCAACTTTGAAGTACTTA	59.901	38.462	8.42	0.00	38.57	2.24
2667	2719	8.295288	AGAAATGAATTCACTGTGATCTTGTTC	58.705	33.333	11.07	10.84	40.72	3.18
2744	2796	4.642885	GCTGACTACTACCTTCTCACTGAT	59.357	45.833	0.00	0.00	0.00	2.90

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.