Multiple sequence alignment - TraesCS2B01G313100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G313100 chr2B 100.000 2504 0 0 1 2504 448580337 448577834 0.000000e+00 4625.0
1 TraesCS2B01G313100 chr2D 90.173 1333 86 28 452 1770 377109509 377108208 0.000000e+00 1694.0
2 TraesCS2B01G313100 chr2D 94.034 771 34 10 4 765 377110495 377109728 0.000000e+00 1158.0
3 TraesCS2B01G313100 chr2D 80.812 714 66 27 1810 2504 377087564 377086903 6.220000e-136 494.0
4 TraesCS2B01G313100 chr2A 91.781 949 52 11 860 1804 510990697 510989771 0.000000e+00 1297.0
5 TraesCS2B01G313100 chr2A 85.714 476 42 9 2040 2504 510979850 510979390 1.740000e-131 479.0
6 TraesCS2B01G313100 chr5A 84.165 461 53 19 313 764 641314612 641314163 1.780000e-116 429.0
7 TraesCS2B01G313100 chr5A 81.292 449 60 20 319 756 415259679 415259244 2.380000e-90 342.0
8 TraesCS2B01G313100 chr5B 86.318 402 44 11 318 712 565784791 565785188 6.400000e-116 427.0
9 TraesCS2B01G313100 chr5B 84.127 441 52 15 314 745 644460244 644459813 6.450000e-111 411.0
10 TraesCS2B01G313100 chr7D 83.553 456 55 16 320 765 25486524 25486079 2.320000e-110 409.0
11 TraesCS2B01G313100 chr7D 88.060 67 5 3 777 841 36213766 36213831 2.670000e-10 76.8
12 TraesCS2B01G313100 chr7B 82.561 453 58 14 317 756 462247759 462248203 1.820000e-101 379.0
13 TraesCS2B01G313100 chr3D 81.182 457 64 18 317 763 537043714 537044158 5.130000e-92 348.0
14 TraesCS2B01G313100 chr1A 81.236 453 62 18 317 758 556437495 556437055 6.630000e-91 344.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G313100 chr2B 448577834 448580337 2503 True 4625 4625 100.0000 1 2504 1 chr2B.!!$R1 2503
1 TraesCS2B01G313100 chr2D 377108208 377110495 2287 True 1426 1694 92.1035 4 1770 2 chr2D.!!$R2 1766
2 TraesCS2B01G313100 chr2D 377086903 377087564 661 True 494 494 80.8120 1810 2504 1 chr2D.!!$R1 694
3 TraesCS2B01G313100 chr2A 510989771 510990697 926 True 1297 1297 91.7810 860 1804 1 chr2A.!!$R2 944

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
21 22 1.977129 CAAGGCCCTTTTCCATTTCCA 59.023 47.619 0.0 0.0 0.0 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2019 2575 0.038599 ATGCATGGTGCCAGTGAGAA 59.961 50.0 0.0 0.0 44.23 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.977129 CAAGGCCCTTTTCCATTTCCA 59.023 47.619 0.00 0.00 0.00 3.53
34 35 6.590656 TTCCATTTCCAGTATTCCATAGGT 57.409 37.500 0.00 0.00 0.00 3.08
257 262 4.636206 CCATTCTTTCCCTTTTCTACTCCG 59.364 45.833 0.00 0.00 0.00 4.63
858 1396 3.301746 CGGAGGGTTCCTAGTTCCT 57.698 57.895 0.00 0.00 41.67 3.36
865 1403 2.450476 GGTTCCTAGTTCCTACCGTCA 58.550 52.381 0.00 0.00 0.00 4.35
1220 1759 0.530744 TACTTCAAGCGCCGTGAGAT 59.469 50.000 2.29 3.01 0.00 2.75
1363 1902 3.006728 CCTCTACGGCCCACCCAA 61.007 66.667 0.00 0.00 0.00 4.12
1365 1904 2.203877 TCTACGGCCCACCCAAGT 60.204 61.111 0.00 0.00 0.00 3.16
1443 1982 4.266976 CGTTTTGTGAAGAAGTACGTCTGT 59.733 41.667 12.25 3.02 0.00 3.41
1541 2080 7.841915 TTATCATTCGTTTTATGCTCTGTGA 57.158 32.000 0.00 0.00 0.00 3.58
1542 2081 5.784750 TCATTCGTTTTATGCTCTGTGAG 57.215 39.130 0.00 0.00 0.00 3.51
1614 2155 4.495844 CGATAGTCATGTGAAGCTGACGTA 60.496 45.833 0.00 0.00 45.08 3.57
1646 2187 3.766545 AGTTTGTTGCCTGGACACATAT 58.233 40.909 0.00 0.00 0.00 1.78
1716 2257 0.931005 GATTCTCGCCGGCTTGTTAG 59.069 55.000 26.68 13.49 0.00 2.34
1784 2325 1.144057 CGCTCCCTGTGATGGTACC 59.856 63.158 4.43 4.43 0.00 3.34
1804 2345 2.220586 TGGTTCATCCACCCTCGCA 61.221 57.895 0.00 0.00 41.93 5.10
1805 2346 1.002624 GGTTCATCCACCCTCGCAA 60.003 57.895 0.00 0.00 35.97 4.85
1806 2347 0.608035 GGTTCATCCACCCTCGCAAA 60.608 55.000 0.00 0.00 35.97 3.68
1807 2348 1.243902 GTTCATCCACCCTCGCAAAA 58.756 50.000 0.00 0.00 0.00 2.44
1808 2349 1.611491 GTTCATCCACCCTCGCAAAAA 59.389 47.619 0.00 0.00 0.00 1.94
1840 2381 5.668558 AAAATAATTAAGGGCGACGCTAG 57.331 39.130 20.77 0.00 0.00 3.42
1841 2382 2.144482 TAATTAAGGGCGACGCTAGC 57.856 50.000 20.77 4.06 0.00 3.42
1874 2415 1.064621 CGGGCATTTGATCCAAGCG 59.935 57.895 0.00 0.00 0.00 4.68
1875 2416 1.227060 GGGCATTTGATCCAAGCGC 60.227 57.895 0.00 0.00 0.00 5.92
1891 2447 0.249155 GCGCCTGTAGCCGTGTATTA 60.249 55.000 0.00 0.00 38.78 0.98
1896 2452 4.034742 CGCCTGTAGCCGTGTATTATTTTT 59.965 41.667 0.00 0.00 38.78 1.94
1926 2482 0.246360 AATCACATCCGACGAGCACA 59.754 50.000 0.00 0.00 0.00 4.57
1971 2527 0.248661 CTACGCTCACCATGGACGAG 60.249 60.000 21.47 22.79 0.00 4.18
1972 2528 2.279502 TACGCTCACCATGGACGAGC 62.280 60.000 33.08 33.08 46.91 5.03
1994 2550 1.959226 GCGACCAACCTCGAAGCAA 60.959 57.895 0.00 0.00 35.58 3.91
2021 2577 4.766088 CGCCGGCAGCTGCTTTTC 62.766 66.667 35.82 19.55 41.70 2.29
2022 2578 3.368571 GCCGGCAGCTGCTTTTCT 61.369 61.111 35.82 0.00 41.70 2.52
2023 2579 2.873288 CCGGCAGCTGCTTTTCTC 59.127 61.111 35.82 18.44 41.70 2.87
2024 2580 1.968017 CCGGCAGCTGCTTTTCTCA 60.968 57.895 35.82 0.00 41.70 3.27
2025 2581 1.208614 CGGCAGCTGCTTTTCTCAC 59.791 57.895 35.82 16.98 41.70 3.51
2026 2582 1.233285 CGGCAGCTGCTTTTCTCACT 61.233 55.000 35.82 0.00 41.70 3.41
2027 2583 0.240411 GGCAGCTGCTTTTCTCACTG 59.760 55.000 35.82 0.00 41.70 3.66
2028 2584 0.240411 GCAGCTGCTTTTCTCACTGG 59.760 55.000 31.33 0.00 38.21 4.00
2029 2585 0.240411 CAGCTGCTTTTCTCACTGGC 59.760 55.000 0.00 0.00 0.00 4.85
2030 2586 0.179009 AGCTGCTTTTCTCACTGGCA 60.179 50.000 0.00 0.00 0.00 4.92
2034 2590 1.251251 GCTTTTCTCACTGGCACCAT 58.749 50.000 0.00 0.00 0.00 3.55
2045 2601 4.178861 GCACCATGCATGCAACAG 57.821 55.556 26.68 18.09 44.26 3.16
2118 2676 2.592864 TTGCAGGTCAACACCCGT 59.407 55.556 0.00 0.00 45.12 5.28
2120 2678 2.110213 GCAGGTCAACACCCGTCA 59.890 61.111 0.00 0.00 45.12 4.35
2123 2681 1.227438 AGGTCAACACCCGTCAACG 60.227 57.895 0.00 0.00 45.12 4.10
2161 2720 1.363807 GCTTGCCGGTTGAAGCTTT 59.636 52.632 21.02 0.00 41.21 3.51
2192 2751 4.378874 GCTAGTTGCAACAATTCAGGACTC 60.379 45.833 30.11 0.00 42.31 3.36
2193 2752 2.887152 AGTTGCAACAATTCAGGACTCC 59.113 45.455 30.11 0.00 0.00 3.85
2194 2753 1.909700 TGCAACAATTCAGGACTCCC 58.090 50.000 0.00 0.00 0.00 4.30
2195 2754 1.144708 TGCAACAATTCAGGACTCCCA 59.855 47.619 0.00 0.00 33.88 4.37
2196 2755 1.541588 GCAACAATTCAGGACTCCCAC 59.458 52.381 0.00 0.00 33.88 4.61
2197 2756 2.815589 GCAACAATTCAGGACTCCCACT 60.816 50.000 0.00 0.00 33.88 4.00
2198 2757 3.077359 CAACAATTCAGGACTCCCACTC 58.923 50.000 0.00 0.00 33.88 3.51
2199 2758 2.338809 ACAATTCAGGACTCCCACTCA 58.661 47.619 0.00 0.00 33.88 3.41
2200 2759 2.915604 ACAATTCAGGACTCCCACTCAT 59.084 45.455 0.00 0.00 33.88 2.90
2201 2760 3.054802 ACAATTCAGGACTCCCACTCATC 60.055 47.826 0.00 0.00 33.88 2.92
2202 2761 1.186200 TTCAGGACTCCCACTCATCG 58.814 55.000 0.00 0.00 33.88 3.84
2203 2762 1.142748 CAGGACTCCCACTCATCGC 59.857 63.158 0.00 0.00 33.88 4.58
2204 2763 2.060980 AGGACTCCCACTCATCGCC 61.061 63.158 0.00 0.00 33.88 5.54
2205 2764 2.105128 GACTCCCACTCATCGCCG 59.895 66.667 0.00 0.00 0.00 6.46
2208 2767 4.147449 TCCCACTCATCGCCGCAG 62.147 66.667 0.00 0.00 0.00 5.18
2217 2776 1.302511 ATCGCCGCAGAAACCACTT 60.303 52.632 0.00 0.00 0.00 3.16
2228 2787 1.464997 GAAACCACTTCACTCGATGCC 59.535 52.381 0.00 0.00 33.86 4.40
2230 2789 2.456119 CCACTTCACTCGATGCCGC 61.456 63.158 0.00 0.00 35.37 6.53
2261 2820 2.335712 GGTTCTGGCTCGGGCTTTG 61.336 63.158 7.48 0.00 38.73 2.77
2272 2831 2.661537 GGCTTTGCCCGTTGTTGC 60.662 61.111 0.00 0.00 44.06 4.17
2273 2832 2.417097 GCTTTGCCCGTTGTTGCT 59.583 55.556 0.00 0.00 0.00 3.91
2274 2833 1.227234 GCTTTGCCCGTTGTTGCTT 60.227 52.632 0.00 0.00 0.00 3.91
2275 2834 0.809636 GCTTTGCCCGTTGTTGCTTT 60.810 50.000 0.00 0.00 0.00 3.51
2276 2835 0.929615 CTTTGCCCGTTGTTGCTTTG 59.070 50.000 0.00 0.00 0.00 2.77
2277 2836 1.086634 TTTGCCCGTTGTTGCTTTGC 61.087 50.000 0.00 0.00 0.00 3.68
2278 2837 2.661537 GCCCGTTGTTGCTTTGCC 60.662 61.111 0.00 0.00 0.00 4.52
2279 2838 2.354539 CCCGTTGTTGCTTTGCCG 60.355 61.111 0.00 0.00 0.00 5.69
2280 2839 2.354539 CCGTTGTTGCTTTGCCGG 60.355 61.111 0.00 0.00 0.00 6.13
2281 2840 2.411290 CGTTGTTGCTTTGCCGGT 59.589 55.556 1.90 0.00 0.00 5.28
2282 2841 1.226831 CGTTGTTGCTTTGCCGGTT 60.227 52.632 1.90 0.00 0.00 4.44
2283 2842 1.478622 CGTTGTTGCTTTGCCGGTTG 61.479 55.000 1.90 0.00 0.00 3.77
2284 2843 1.520342 TTGTTGCTTTGCCGGTTGC 60.520 52.632 1.90 3.10 41.77 4.17
2296 2855 1.367102 CGGTTGCAGCAAACCCAAT 59.633 52.632 17.80 0.00 45.83 3.16
2322 2881 0.250124 TTCCATCTTGCGTCGGTTGT 60.250 50.000 0.00 0.00 0.00 3.32
2323 2882 0.604073 TCCATCTTGCGTCGGTTGTA 59.396 50.000 0.00 0.00 0.00 2.41
2325 2884 1.671850 CCATCTTGCGTCGGTTGTAGT 60.672 52.381 0.00 0.00 0.00 2.73
2338 2897 3.548014 CGGTTGTAGTGTTCCAGCAAAAG 60.548 47.826 0.00 0.00 0.00 2.27
2350 2910 2.875933 CCAGCAAAAGTCTTGTCCGTTA 59.124 45.455 0.00 0.00 0.00 3.18
2351 2911 3.303791 CCAGCAAAAGTCTTGTCCGTTAC 60.304 47.826 0.00 0.00 0.00 2.50
2375 2935 2.750237 GCCACCCCGTGATTCCAC 60.750 66.667 0.00 0.00 39.86 4.02
2376 2936 3.077907 CCACCCCGTGATTCCACT 58.922 61.111 0.00 0.00 41.06 4.00
2382 2942 1.019278 CCCGTGATTCCACTGTTCCG 61.019 60.000 0.00 0.00 41.06 4.30
2383 2943 0.320421 CCGTGATTCCACTGTTCCGT 60.320 55.000 0.00 0.00 41.06 4.69
2398 2958 1.214325 CCGTCATCCGTGCTACACA 59.786 57.895 0.00 0.00 33.40 3.72
2425 2985 0.798776 CACTCACCGATGCAAGTTCC 59.201 55.000 0.00 0.00 0.00 3.62
2428 2988 0.396435 TCACCGATGCAAGTTCCAGT 59.604 50.000 0.00 0.00 0.00 4.00
2446 3006 4.081697 TCCAGTAGATCTTGATTGTCGCAA 60.082 41.667 0.00 0.00 0.00 4.85
2447 3007 4.631377 CCAGTAGATCTTGATTGTCGCAAA 59.369 41.667 0.00 0.00 0.00 3.68
2451 3011 5.481200 AGATCTTGATTGTCGCAAATCTG 57.519 39.130 10.14 5.06 37.44 2.90
2455 3015 2.412870 TGATTGTCGCAAATCTGTCGT 58.587 42.857 10.14 0.00 37.44 4.34
2459 3019 1.079405 TCGCAAATCTGTCGTCCCC 60.079 57.895 0.00 0.00 0.00 4.81
2460 3020 2.106683 CGCAAATCTGTCGTCCCCC 61.107 63.158 0.00 0.00 0.00 5.40
2467 3027 0.471211 TCTGTCGTCCCCCTGTTTCT 60.471 55.000 0.00 0.00 0.00 2.52
2469 3029 1.621814 CTGTCGTCCCCCTGTTTCTAA 59.378 52.381 0.00 0.00 0.00 2.10
2472 3032 2.038164 GTCGTCCCCCTGTTTCTAACTT 59.962 50.000 0.00 0.00 0.00 2.66
2495 3055 4.996062 TTTATTCGTCGGTTCCAACTTC 57.004 40.909 0.00 0.00 0.00 3.01
2501 3061 2.554370 TCGGTTCCAACTTCCGATTT 57.446 45.000 1.35 0.00 46.54 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.256306 GGAAATGGAAAAGGGCCTTGA 58.744 47.619 21.72 4.73 0.00 3.02
1 2 1.977129 TGGAAATGGAAAAGGGCCTTG 59.023 47.619 21.72 0.00 0.00 3.61
2 3 2.259917 CTGGAAATGGAAAAGGGCCTT 58.740 47.619 14.48 14.48 0.00 4.35
8 9 7.561356 ACCTATGGAATACTGGAAATGGAAAAG 59.439 37.037 0.00 0.00 0.00 2.27
13 14 7.660030 AAAACCTATGGAATACTGGAAATGG 57.340 36.000 0.00 0.00 0.00 3.16
44 45 9.741647 GAAACTGAGAACAGAAATGAAGAAAAT 57.258 29.630 0.00 0.00 46.03 1.82
59 60 8.917415 AGAAAAGAATTTGTGAAACTGAGAAC 57.083 30.769 0.00 0.00 39.02 3.01
419 424 5.060816 GTGCATATGAAAAATGTTGACCACG 59.939 40.000 6.97 0.00 0.00 4.94
784 1322 2.856222 CCACAGCCTTCTCTTTTCTGT 58.144 47.619 0.00 0.00 38.40 3.41
1220 1759 1.676678 GCTCACGTAGGCTGGATCCA 61.677 60.000 15.27 15.27 0.00 3.41
1347 1886 2.240162 GACTTGGGTGGGCCGTAGAG 62.240 65.000 0.00 0.00 34.97 2.43
1443 1982 1.961793 CGACCAAGTCCAAACAAGGA 58.038 50.000 0.00 0.00 34.64 3.36
1614 2155 4.630069 CAGGCAACAAACTACGCTAACTAT 59.370 41.667 0.00 0.00 41.41 2.12
1629 2170 4.854173 ACAATATATGTGTCCAGGCAACA 58.146 39.130 0.00 0.00 41.93 3.33
1703 2244 2.511600 CCCTCTAACAAGCCGGCG 60.512 66.667 23.20 10.77 0.00 6.46
1716 2257 1.332686 ACGCTTTTCAAACGAACCCTC 59.667 47.619 0.00 0.00 0.00 4.30
1814 2355 7.733402 AGCGTCGCCCTTAATTATTTTTATA 57.267 32.000 14.86 0.00 0.00 0.98
1815 2356 6.628919 AGCGTCGCCCTTAATTATTTTTAT 57.371 33.333 14.86 0.00 0.00 1.40
1819 2360 3.497262 GCTAGCGTCGCCCTTAATTATTT 59.503 43.478 14.86 0.00 0.00 1.40
1855 2396 1.227060 GCTTGGATCAAATGCCCGC 60.227 57.895 0.00 0.00 0.00 6.13
1874 2415 5.296035 AGAAAAATAATACACGGCTACAGGC 59.704 40.000 0.00 0.00 40.90 4.85
1875 2416 6.018180 GGAGAAAAATAATACACGGCTACAGG 60.018 42.308 0.00 0.00 0.00 4.00
1960 2516 4.148825 GCCTCGCTCGTCCATGGT 62.149 66.667 12.58 0.00 0.00 3.55
2007 2563 1.208614 GTGAGAAAAGCAGCTGCCG 59.791 57.895 34.39 0.00 43.38 5.69
2011 2567 0.179009 TGCCAGTGAGAAAAGCAGCT 60.179 50.000 0.00 0.00 0.00 4.24
2012 2568 0.039708 GTGCCAGTGAGAAAAGCAGC 60.040 55.000 0.00 0.00 33.37 5.25
2013 2569 0.595095 GGTGCCAGTGAGAAAAGCAG 59.405 55.000 0.00 0.00 33.37 4.24
2014 2570 0.106769 TGGTGCCAGTGAGAAAAGCA 60.107 50.000 0.00 0.00 0.00 3.91
2015 2571 1.068055 CATGGTGCCAGTGAGAAAAGC 60.068 52.381 0.00 0.00 0.00 3.51
2016 2572 1.068055 GCATGGTGCCAGTGAGAAAAG 60.068 52.381 0.00 0.00 37.42 2.27
2017 2573 0.961019 GCATGGTGCCAGTGAGAAAA 59.039 50.000 0.00 0.00 37.42 2.29
2018 2574 0.178995 TGCATGGTGCCAGTGAGAAA 60.179 50.000 0.00 0.00 44.23 2.52
2019 2575 0.038599 ATGCATGGTGCCAGTGAGAA 59.961 50.000 0.00 0.00 44.23 2.87
2020 2576 0.678684 CATGCATGGTGCCAGTGAGA 60.679 55.000 19.40 0.00 44.23 3.27
2021 2577 1.807226 CATGCATGGTGCCAGTGAG 59.193 57.895 19.40 0.00 44.23 3.51
2022 2578 2.344981 GCATGCATGGTGCCAGTGA 61.345 57.895 27.34 0.00 44.23 3.41
2023 2579 2.161078 TTGCATGCATGGTGCCAGTG 62.161 55.000 27.34 0.94 44.23 3.66
2024 2580 1.909287 TTGCATGCATGGTGCCAGT 60.909 52.632 27.34 0.00 44.23 4.00
2025 2581 1.447140 GTTGCATGCATGGTGCCAG 60.447 57.895 27.34 0.91 44.23 4.85
2026 2582 2.161078 CTGTTGCATGCATGGTGCCA 62.161 55.000 27.34 14.12 44.23 4.92
2027 2583 1.447140 CTGTTGCATGCATGGTGCC 60.447 57.895 27.34 11.61 44.23 5.01
2028 2584 2.098233 GCTGTTGCATGCATGGTGC 61.098 57.895 27.34 18.68 40.73 5.01
2029 2585 1.803922 CGCTGTTGCATGCATGGTG 60.804 57.895 27.34 16.30 39.64 4.17
2030 2586 2.270257 ACGCTGTTGCATGCATGGT 61.270 52.632 27.34 12.26 39.64 3.55
2054 2610 3.645975 ACCGAAGTTGCAACCGCG 61.646 61.111 25.62 25.74 42.97 6.46
2055 2611 2.051345 CACCGAAGTTGCAACCGC 60.051 61.111 25.62 16.42 39.24 5.68
2057 2613 2.335011 GCCACCGAAGTTGCAACC 59.665 61.111 25.62 10.71 34.80 3.77
2060 2616 2.970324 GTCGCCACCGAAGTTGCA 60.970 61.111 0.00 0.00 46.34 4.08
2080 2636 2.541120 GCTGCCATCTAAGCTGCGG 61.541 63.158 0.00 0.00 43.71 5.69
2085 2641 1.723870 CAACCGCTGCCATCTAAGC 59.276 57.895 0.00 0.00 36.03 3.09
2105 2661 1.227438 CGTTGACGGGTGTTGACCT 60.227 57.895 0.00 0.00 42.66 3.85
2111 2667 2.338984 GAGCTCGTTGACGGGTGT 59.661 61.111 0.00 0.00 42.89 4.16
2123 2681 2.223135 GCTTTTTGCTACGATGGAGCTC 60.223 50.000 4.71 4.71 40.76 4.09
2149 2708 0.248866 AACCGCAAAAGCTTCAACCG 60.249 50.000 0.00 0.46 0.00 4.44
2172 2731 2.887152 GGAGTCCTGAATTGTTGCAACT 59.113 45.455 28.61 10.38 0.00 3.16
2187 2746 2.501610 GGCGATGAGTGGGAGTCC 59.498 66.667 0.00 0.00 0.00 3.85
2192 2751 3.664025 TTCTGCGGCGATGAGTGGG 62.664 63.158 12.98 0.00 0.00 4.61
2193 2752 1.741401 TTTCTGCGGCGATGAGTGG 60.741 57.895 12.98 0.00 0.00 4.00
2194 2753 1.421485 GTTTCTGCGGCGATGAGTG 59.579 57.895 12.98 0.00 0.00 3.51
2195 2754 1.741770 GGTTTCTGCGGCGATGAGT 60.742 57.895 12.98 0.00 0.00 3.41
2196 2755 1.741401 TGGTTTCTGCGGCGATGAG 60.741 57.895 12.98 2.38 0.00 2.90
2197 2756 2.032634 GTGGTTTCTGCGGCGATGA 61.033 57.895 12.98 4.31 0.00 2.92
2198 2757 1.577328 AAGTGGTTTCTGCGGCGATG 61.577 55.000 12.98 1.33 0.00 3.84
2199 2758 1.298859 GAAGTGGTTTCTGCGGCGAT 61.299 55.000 12.98 0.00 32.83 4.58
2200 2759 1.959226 GAAGTGGTTTCTGCGGCGA 60.959 57.895 12.98 0.00 32.83 5.54
2201 2760 2.250939 TGAAGTGGTTTCTGCGGCG 61.251 57.895 0.51 0.51 36.71 6.46
2202 2761 1.166531 AGTGAAGTGGTTTCTGCGGC 61.167 55.000 0.00 0.00 36.71 6.53
2203 2762 0.868406 GAGTGAAGTGGTTTCTGCGG 59.132 55.000 0.00 0.00 36.71 5.69
2204 2763 0.508641 CGAGTGAAGTGGTTTCTGCG 59.491 55.000 0.00 0.00 36.71 5.18
2205 2764 1.865865 TCGAGTGAAGTGGTTTCTGC 58.134 50.000 0.00 0.00 36.71 4.26
2208 2767 1.464997 GGCATCGAGTGAAGTGGTTTC 59.535 52.381 0.00 0.00 36.29 2.78
2217 2776 2.390599 GCTTTGCGGCATCGAGTGA 61.391 57.895 2.28 0.00 39.00 3.41
2228 2787 1.199624 GAACCAACAACTGCTTTGCG 58.800 50.000 0.00 0.00 39.01 4.85
2230 2789 2.813061 CCAGAACCAACAACTGCTTTG 58.187 47.619 0.00 0.00 41.49 2.77
2261 2820 2.661537 GGCAAAGCAACAACGGGC 60.662 61.111 0.00 0.00 0.00 6.13
2264 2823 1.226831 AACCGGCAAAGCAACAACG 60.227 52.632 0.00 0.00 0.00 4.10
2276 2835 4.662961 GGGTTTGCTGCAACCGGC 62.663 66.667 15.72 5.80 43.83 6.13
2277 2836 2.098426 ATTGGGTTTGCTGCAACCGG 62.098 55.000 15.72 0.00 0.00 5.28
2278 2837 0.945265 CATTGGGTTTGCTGCAACCG 60.945 55.000 15.72 3.89 0.00 4.44
2279 2838 0.392336 TCATTGGGTTTGCTGCAACC 59.608 50.000 15.72 17.95 0.00 3.77
2280 2839 1.069049 AGTCATTGGGTTTGCTGCAAC 59.931 47.619 15.72 10.16 0.00 4.17
2281 2840 1.068895 CAGTCATTGGGTTTGCTGCAA 59.931 47.619 11.69 11.69 0.00 4.08
2282 2841 0.675083 CAGTCATTGGGTTTGCTGCA 59.325 50.000 0.00 0.00 0.00 4.41
2283 2842 0.037975 CCAGTCATTGGGTTTGCTGC 60.038 55.000 0.00 0.00 43.75 5.25
2296 2855 0.396435 ACGCAAGATGGAACCAGTCA 59.604 50.000 0.00 0.00 43.62 3.41
2322 2881 4.523083 ACAAGACTTTTGCTGGAACACTA 58.477 39.130 0.00 0.00 0.00 2.74
2323 2882 3.356290 ACAAGACTTTTGCTGGAACACT 58.644 40.909 0.00 0.00 0.00 3.55
2325 2884 2.687935 GGACAAGACTTTTGCTGGAACA 59.312 45.455 0.00 0.00 0.00 3.18
2338 2897 2.412847 GCAATGCTGTAACGGACAAGAC 60.413 50.000 0.00 0.00 37.70 3.01
2350 2910 4.284550 ACGGGGTGGCAATGCTGT 62.285 61.111 4.82 0.00 0.00 4.40
2351 2911 3.751246 CACGGGGTGGCAATGCTG 61.751 66.667 4.82 0.00 0.00 4.41
2382 2942 1.726791 CAACTGTGTAGCACGGATGAC 59.273 52.381 14.18 0.00 43.22 3.06
2383 2943 1.343142 ACAACTGTGTAGCACGGATGA 59.657 47.619 20.07 0.00 43.22 2.92
2398 2958 1.673033 GCATCGGTGAGTGCTACAACT 60.673 52.381 0.00 0.00 38.30 3.16
2410 2970 2.002586 CTACTGGAACTTGCATCGGTG 58.997 52.381 0.00 0.00 0.00 4.94
2425 2985 5.784750 TTTGCGACAATCAAGATCTACTG 57.215 39.130 0.00 0.00 0.00 2.74
2428 2988 6.108687 ACAGATTTGCGACAATCAAGATCTA 58.891 36.000 0.00 0.00 0.00 1.98
2439 2999 0.669318 GGGACGACAGATTTGCGACA 60.669 55.000 6.98 0.00 0.00 4.35
2446 3006 1.003233 GAAACAGGGGGACGACAGATT 59.997 52.381 0.00 0.00 0.00 2.40
2447 3007 0.613777 GAAACAGGGGGACGACAGAT 59.386 55.000 0.00 0.00 0.00 2.90
2451 3011 1.622312 AGTTAGAAACAGGGGGACGAC 59.378 52.381 0.00 0.00 0.00 4.34
2472 3032 5.277925 GGAAGTTGGAACCGACGAATAAAAA 60.278 40.000 0.00 0.00 35.57 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.