Multiple sequence alignment - TraesCS2B01G312900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G312900 chr2B 100.000 3067 0 0 1 3067 448322503 448325569 0.000000e+00 5664.0
1 TraesCS2B01G312900 chr2A 94.643 2128 70 20 730 2834 510855296 510857402 0.000000e+00 3258.0
2 TraesCS2B01G312900 chr2A 88.174 482 54 3 162 643 510854813 510855291 3.430000e-159 571.0
3 TraesCS2B01G312900 chr2A 97.333 75 2 0 638 712 43395350 43395424 8.930000e-26 128.0
4 TraesCS2B01G312900 chr2D 93.431 2116 85 17 730 2832 376938402 376940476 0.000000e+00 3088.0
5 TraesCS2B01G312900 chr6B 92.258 465 30 5 2372 2833 471099936 471099475 0.000000e+00 654.0
6 TraesCS2B01G312900 chr6B 92.077 467 30 5 2372 2834 460540098 460539635 0.000000e+00 651.0
7 TraesCS2B01G312900 chr6B 89.076 238 21 4 2832 3067 477748782 477748548 1.080000e-74 291.0
8 TraesCS2B01G312900 chr6B 89.820 167 10 1 2167 2333 460540257 460540098 1.110000e-49 207.0
9 TraesCS2B01G312900 chr5D 92.060 466 30 6 2372 2834 511597585 511598046 0.000000e+00 649.0
10 TraesCS2B01G312900 chr5D 91.716 169 5 2 2167 2333 511597424 511597585 3.080000e-55 226.0
11 TraesCS2B01G312900 chr7B 97.297 74 2 0 639 712 582708858 582708785 3.210000e-25 126.0
12 TraesCS2B01G312900 chr6A 97.297 74 2 0 639 712 595646983 595647056 3.210000e-25 126.0
13 TraesCS2B01G312900 chr5B 94.937 79 3 1 634 712 445557937 445557860 4.150000e-24 122.0
14 TraesCS2B01G312900 chr4B 96.000 75 3 0 638 712 505208016 505207942 4.150000e-24 122.0
15 TraesCS2B01G312900 chr4B 94.118 51 2 1 2835 2885 640435936 640435887 3.280000e-10 76.8
16 TraesCS2B01G312900 chr1B 94.937 79 3 1 635 712 323632427 323632505 4.150000e-24 122.0
17 TraesCS2B01G312900 chr1B 94.872 78 4 0 635 712 378645908 378645831 4.150000e-24 122.0
18 TraesCS2B01G312900 chr1B 94.872 78 4 0 635 712 497751371 497751294 4.150000e-24 122.0
19 TraesCS2B01G312900 chr7A 91.765 85 7 0 628 712 66408370 66408286 5.370000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G312900 chr2B 448322503 448325569 3066 False 5664.0 5664 100.0000 1 3067 1 chr2B.!!$F1 3066
1 TraesCS2B01G312900 chr2A 510854813 510857402 2589 False 1914.5 3258 91.4085 162 2834 2 chr2A.!!$F2 2672
2 TraesCS2B01G312900 chr2D 376938402 376940476 2074 False 3088.0 3088 93.4310 730 2832 1 chr2D.!!$F1 2102
3 TraesCS2B01G312900 chr6B 460539635 460540257 622 True 429.0 651 90.9485 2167 2834 2 chr6B.!!$R3 667
4 TraesCS2B01G312900 chr5D 511597424 511598046 622 False 437.5 649 91.8880 2167 2834 2 chr5D.!!$F1 667


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
184 185 0.042581 TAGGTGACCATCAGGAGGCA 59.957 55.0 3.63 0.0 38.69 4.75 F
405 406 0.251916 CAATCTACGAACCTGGCCCA 59.748 55.0 0.00 0.0 0.00 5.36 F
911 912 0.253347 AGGCCCCATCTTCTTCTCCA 60.253 55.0 0.00 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1314 1329 0.595567 TGTCGTACACTGTGTTCGCC 60.596 55.0 27.81 20.78 40.25 5.54 R
1655 1677 0.976641 TGATGTCTTCGGTCTTGCCT 59.023 50.0 0.00 0.00 34.25 4.75 R
2840 2876 0.037160 GGCCTAAACCGGGTCTTTCA 59.963 55.0 6.32 0.00 0.00 2.69 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.728845 TGTCCCGCTTCATAGATAAAGC 58.271 45.455 0.00 0.00 43.49 3.51
22 23 3.133901 TGTCCCGCTTCATAGATAAAGCA 59.866 43.478 7.74 0.00 46.49 3.91
23 24 4.127171 GTCCCGCTTCATAGATAAAGCAA 58.873 43.478 7.74 0.00 46.49 3.91
24 25 4.024809 GTCCCGCTTCATAGATAAAGCAAC 60.025 45.833 7.74 0.00 46.49 4.17
25 26 3.876914 CCCGCTTCATAGATAAAGCAACA 59.123 43.478 7.74 0.00 46.49 3.33
26 27 4.516698 CCCGCTTCATAGATAAAGCAACAT 59.483 41.667 7.74 0.00 46.49 2.71
27 28 5.334414 CCCGCTTCATAGATAAAGCAACATC 60.334 44.000 7.74 0.00 46.49 3.06
28 29 5.237127 CCGCTTCATAGATAAAGCAACATCA 59.763 40.000 7.74 0.00 46.49 3.07
29 30 6.238456 CCGCTTCATAGATAAAGCAACATCAA 60.238 38.462 7.74 0.00 46.49 2.57
30 31 7.358066 CGCTTCATAGATAAAGCAACATCAAT 58.642 34.615 7.74 0.00 46.49 2.57
31 32 8.498358 CGCTTCATAGATAAAGCAACATCAATA 58.502 33.333 7.74 0.00 46.49 1.90
32 33 9.604626 GCTTCATAGATAAAGCAACATCAATAC 57.395 33.333 2.41 0.00 45.67 1.89
36 37 9.669353 CATAGATAAAGCAACATCAATACAACC 57.331 33.333 0.00 0.00 0.00 3.77
37 38 7.701539 AGATAAAGCAACATCAATACAACCA 57.298 32.000 0.00 0.00 0.00 3.67
38 39 8.121305 AGATAAAGCAACATCAATACAACCAA 57.879 30.769 0.00 0.00 0.00 3.67
39 40 8.584157 AGATAAAGCAACATCAATACAACCAAA 58.416 29.630 0.00 0.00 0.00 3.28
40 41 6.843069 AAAGCAACATCAATACAACCAAAC 57.157 33.333 0.00 0.00 0.00 2.93
41 42 5.789643 AGCAACATCAATACAACCAAACT 57.210 34.783 0.00 0.00 0.00 2.66
42 43 5.531634 AGCAACATCAATACAACCAAACTG 58.468 37.500 0.00 0.00 0.00 3.16
43 44 4.685628 GCAACATCAATACAACCAAACTGG 59.314 41.667 0.00 0.00 45.02 4.00
57 58 4.003648 CCAAACTGGTCAACTAGATGTCC 58.996 47.826 8.95 8.95 31.35 4.02
58 59 4.504864 CCAAACTGGTCAACTAGATGTCCA 60.505 45.833 16.00 16.00 36.39 4.02
59 60 4.974645 AACTGGTCAACTAGATGTCCAA 57.025 40.909 17.18 4.93 37.91 3.53
60 61 4.974645 ACTGGTCAACTAGATGTCCAAA 57.025 40.909 17.18 0.00 37.91 3.28
61 62 5.505181 ACTGGTCAACTAGATGTCCAAAT 57.495 39.130 17.18 8.15 37.91 2.32
62 63 5.880901 ACTGGTCAACTAGATGTCCAAATT 58.119 37.500 17.18 5.14 37.91 1.82
63 64 7.016153 ACTGGTCAACTAGATGTCCAAATTA 57.984 36.000 17.18 0.00 37.91 1.40
64 65 7.458397 ACTGGTCAACTAGATGTCCAAATTAA 58.542 34.615 17.18 0.00 37.91 1.40
65 66 7.942341 ACTGGTCAACTAGATGTCCAAATTAAA 59.058 33.333 17.18 0.00 37.91 1.52
66 67 8.698973 TGGTCAACTAGATGTCCAAATTAAAA 57.301 30.769 14.87 0.00 35.92 1.52
67 68 9.137459 TGGTCAACTAGATGTCCAAATTAAAAA 57.863 29.630 14.87 0.00 35.92 1.94
68 69 9.406828 GGTCAACTAGATGTCCAAATTAAAAAC 57.593 33.333 10.64 0.00 0.00 2.43
69 70 9.959749 GTCAACTAGATGTCCAAATTAAAAACA 57.040 29.630 0.00 0.00 0.00 2.83
79 80 9.712305 TGTCCAAATTAAAAACAAAAACAGAGA 57.288 25.926 0.00 0.00 0.00 3.10
87 88 9.680315 TTAAAAACAAAAACAGAGAAAACGAGA 57.320 25.926 0.00 0.00 0.00 4.04
88 89 7.796958 AAAACAAAAACAGAGAAAACGAGAG 57.203 32.000 0.00 0.00 0.00 3.20
89 90 5.485662 ACAAAAACAGAGAAAACGAGAGG 57.514 39.130 0.00 0.00 0.00 3.69
90 91 5.183228 ACAAAAACAGAGAAAACGAGAGGA 58.817 37.500 0.00 0.00 0.00 3.71
91 92 5.294552 ACAAAAACAGAGAAAACGAGAGGAG 59.705 40.000 0.00 0.00 0.00 3.69
92 93 4.939052 AAACAGAGAAAACGAGAGGAGA 57.061 40.909 0.00 0.00 0.00 3.71
93 94 4.513198 AACAGAGAAAACGAGAGGAGAG 57.487 45.455 0.00 0.00 0.00 3.20
94 95 3.757270 ACAGAGAAAACGAGAGGAGAGA 58.243 45.455 0.00 0.00 0.00 3.10
95 96 4.145807 ACAGAGAAAACGAGAGGAGAGAA 58.854 43.478 0.00 0.00 0.00 2.87
96 97 4.770010 ACAGAGAAAACGAGAGGAGAGAAT 59.230 41.667 0.00 0.00 0.00 2.40
97 98 5.101628 CAGAGAAAACGAGAGGAGAGAATG 58.898 45.833 0.00 0.00 0.00 2.67
98 99 5.013547 AGAGAAAACGAGAGGAGAGAATGA 58.986 41.667 0.00 0.00 0.00 2.57
99 100 5.478679 AGAGAAAACGAGAGGAGAGAATGAA 59.521 40.000 0.00 0.00 0.00 2.57
100 101 5.719173 AGAAAACGAGAGGAGAGAATGAAG 58.281 41.667 0.00 0.00 0.00 3.02
101 102 5.245075 AGAAAACGAGAGGAGAGAATGAAGT 59.755 40.000 0.00 0.00 0.00 3.01
102 103 4.712122 AACGAGAGGAGAGAATGAAGTC 57.288 45.455 0.00 0.00 0.00 3.01
103 104 3.963129 ACGAGAGGAGAGAATGAAGTCT 58.037 45.455 0.00 0.00 0.00 3.24
104 105 3.945285 ACGAGAGGAGAGAATGAAGTCTC 59.055 47.826 0.00 0.00 43.80 3.36
110 111 1.285578 GAGAATGAAGTCTCGGCTGC 58.714 55.000 0.00 0.00 35.04 5.25
111 112 0.459237 AGAATGAAGTCTCGGCTGCG 60.459 55.000 0.00 0.00 0.00 5.18
112 113 1.424493 GAATGAAGTCTCGGCTGCGG 61.424 60.000 0.11 0.11 0.00 5.69
113 114 2.859273 AATGAAGTCTCGGCTGCGGG 62.859 60.000 7.38 0.00 0.00 6.13
122 123 4.645921 GGCTGCGGGCACAACAAC 62.646 66.667 15.36 0.00 44.01 3.32
123 124 3.898509 GCTGCGGGCACAACAACA 61.899 61.111 0.00 0.00 41.35 3.33
124 125 2.026014 CTGCGGGCACAACAACAC 59.974 61.111 0.00 0.00 0.00 3.32
125 126 2.751837 TGCGGGCACAACAACACA 60.752 55.556 0.00 0.00 0.00 3.72
126 127 2.074230 CTGCGGGCACAACAACACAT 62.074 55.000 0.00 0.00 0.00 3.21
127 128 0.819666 TGCGGGCACAACAACACATA 60.820 50.000 0.00 0.00 0.00 2.29
128 129 0.312416 GCGGGCACAACAACACATAA 59.688 50.000 0.00 0.00 0.00 1.90
129 130 1.665735 GCGGGCACAACAACACATAAG 60.666 52.381 0.00 0.00 0.00 1.73
130 131 1.665735 CGGGCACAACAACACATAAGC 60.666 52.381 0.00 0.00 0.00 3.09
131 132 1.336795 GGGCACAACAACACATAAGCC 60.337 52.381 0.00 0.00 40.08 4.35
132 133 1.339610 GGCACAACAACACATAAGCCA 59.660 47.619 0.00 0.00 40.50 4.75
133 134 2.607771 GGCACAACAACACATAAGCCAG 60.608 50.000 0.00 0.00 40.50 4.85
134 135 2.293122 GCACAACAACACATAAGCCAGA 59.707 45.455 0.00 0.00 0.00 3.86
135 136 3.610114 GCACAACAACACATAAGCCAGAG 60.610 47.826 0.00 0.00 0.00 3.35
136 137 2.554032 ACAACAACACATAAGCCAGAGC 59.446 45.455 0.00 0.00 40.32 4.09
137 138 2.553602 CAACAACACATAAGCCAGAGCA 59.446 45.455 0.00 0.00 43.56 4.26
138 139 2.862541 ACAACACATAAGCCAGAGCAA 58.137 42.857 0.00 0.00 43.56 3.91
139 140 3.221771 ACAACACATAAGCCAGAGCAAA 58.778 40.909 0.00 0.00 43.56 3.68
140 141 3.636300 ACAACACATAAGCCAGAGCAAAA 59.364 39.130 0.00 0.00 43.56 2.44
141 142 4.281688 ACAACACATAAGCCAGAGCAAAAT 59.718 37.500 0.00 0.00 43.56 1.82
142 143 5.476599 ACAACACATAAGCCAGAGCAAAATA 59.523 36.000 0.00 0.00 43.56 1.40
143 144 5.567138 ACACATAAGCCAGAGCAAAATAC 57.433 39.130 0.00 0.00 43.56 1.89
144 145 5.009631 ACACATAAGCCAGAGCAAAATACA 58.990 37.500 0.00 0.00 43.56 2.29
145 146 5.476599 ACACATAAGCCAGAGCAAAATACAA 59.523 36.000 0.00 0.00 43.56 2.41
146 147 6.032094 CACATAAGCCAGAGCAAAATACAAG 58.968 40.000 0.00 0.00 43.56 3.16
147 148 5.945784 ACATAAGCCAGAGCAAAATACAAGA 59.054 36.000 0.00 0.00 43.56 3.02
148 149 6.604795 ACATAAGCCAGAGCAAAATACAAGAT 59.395 34.615 0.00 0.00 43.56 2.40
149 150 7.775093 ACATAAGCCAGAGCAAAATACAAGATA 59.225 33.333 0.00 0.00 43.56 1.98
150 151 6.442513 AAGCCAGAGCAAAATACAAGATAC 57.557 37.500 0.00 0.00 43.56 2.24
151 152 5.500234 AGCCAGAGCAAAATACAAGATACA 58.500 37.500 0.00 0.00 43.56 2.29
152 153 6.125029 AGCCAGAGCAAAATACAAGATACAT 58.875 36.000 0.00 0.00 43.56 2.29
153 154 6.261826 AGCCAGAGCAAAATACAAGATACATC 59.738 38.462 0.00 0.00 43.56 3.06
154 155 6.514048 GCCAGAGCAAAATACAAGATACATCC 60.514 42.308 0.00 0.00 39.53 3.51
155 156 6.769822 CCAGAGCAAAATACAAGATACATCCT 59.230 38.462 0.00 0.00 0.00 3.24
156 157 7.041508 CCAGAGCAAAATACAAGATACATCCTC 60.042 40.741 0.00 0.00 0.00 3.71
157 158 7.496920 CAGAGCAAAATACAAGATACATCCTCA 59.503 37.037 0.00 0.00 0.00 3.86
158 159 8.049117 AGAGCAAAATACAAGATACATCCTCAA 58.951 33.333 0.00 0.00 0.00 3.02
159 160 8.218338 AGCAAAATACAAGATACATCCTCAAG 57.782 34.615 0.00 0.00 0.00 3.02
160 161 7.284034 AGCAAAATACAAGATACATCCTCAAGG 59.716 37.037 0.00 0.00 0.00 3.61
183 184 0.466124 GTAGGTGACCATCAGGAGGC 59.534 60.000 3.63 0.00 38.69 4.70
184 185 0.042581 TAGGTGACCATCAGGAGGCA 59.957 55.000 3.63 0.00 38.69 4.75
214 215 6.520272 CCAGTTCCTTATATCTCCTTGTCAG 58.480 44.000 0.00 0.00 0.00 3.51
217 218 7.708752 CAGTTCCTTATATCTCCTTGTCAGTTC 59.291 40.741 0.00 0.00 0.00 3.01
228 229 4.351938 TCAGTTCGTCCACCGCCG 62.352 66.667 0.00 0.00 36.19 6.46
234 235 4.554363 CGTCCACCGCCGCTCTAG 62.554 72.222 0.00 0.00 0.00 2.43
260 261 1.303643 CTTGGACAAGGGCCTCCAC 60.304 63.158 12.26 4.11 36.24 4.02
264 265 3.607370 GACAAGGGCCTCCACGGTC 62.607 68.421 6.46 6.51 36.34 4.79
273 274 1.641577 CCTCCACGGTCGAAAGAATC 58.358 55.000 0.00 0.00 45.01 2.52
276 277 1.076332 CCACGGTCGAAAGAATCCAC 58.924 55.000 0.00 0.00 45.01 4.02
278 279 2.346803 CACGGTCGAAAGAATCCACAT 58.653 47.619 0.00 0.00 45.01 3.21
300 301 7.753580 CACATATTTTATAGATAGCGTCGGTGA 59.246 37.037 7.30 0.00 0.00 4.02
301 302 8.467598 ACATATTTTATAGATAGCGTCGGTGAT 58.532 33.333 7.30 0.00 0.00 3.06
315 316 5.286438 CGTCGGTGATCATGTTAGGAAATA 58.714 41.667 0.00 0.00 0.00 1.40
335 336 8.449397 GGAAATATATGCTCAATCACTAGCTTG 58.551 37.037 0.00 0.00 39.53 4.01
350 351 5.581085 CACTAGCTTGTTCCTAATACACCAC 59.419 44.000 0.00 0.00 0.00 4.16
352 353 4.980573 AGCTTGTTCCTAATACACCACAA 58.019 39.130 0.00 0.00 0.00 3.33
359 360 2.997986 CCTAATACACCACAACGACCAC 59.002 50.000 0.00 0.00 0.00 4.16
360 361 2.623878 AATACACCACAACGACCACA 57.376 45.000 0.00 0.00 0.00 4.17
361 362 2.851263 ATACACCACAACGACCACAT 57.149 45.000 0.00 0.00 0.00 3.21
366 367 0.874390 CCACAACGACCACATCAAGG 59.126 55.000 0.00 0.00 0.00 3.61
405 406 0.251916 CAATCTACGAACCTGGCCCA 59.748 55.000 0.00 0.00 0.00 5.36
414 415 2.037687 CCTGGCCCAAGCATCCAA 59.962 61.111 0.00 0.00 42.56 3.53
421 422 1.344114 GCCCAAGCATCCAAACAAGAA 59.656 47.619 0.00 0.00 39.53 2.52
422 423 2.027837 GCCCAAGCATCCAAACAAGAAT 60.028 45.455 0.00 0.00 39.53 2.40
469 470 1.152830 ACCACCCATTGTCCCACAC 59.847 57.895 0.00 0.00 0.00 3.82
470 471 1.360393 ACCACCCATTGTCCCACACT 61.360 55.000 0.00 0.00 0.00 3.55
472 473 1.247567 CACCCATTGTCCCACACTTC 58.752 55.000 0.00 0.00 0.00 3.01
478 479 0.768622 TTGTCCCACACTTCCCGAAT 59.231 50.000 0.00 0.00 0.00 3.34
480 481 0.323629 GTCCCACACTTCCCGAATGA 59.676 55.000 0.00 0.00 0.00 2.57
502 503 9.905713 AATGACAGTTTTAGTGTATCCATATGT 57.094 29.630 1.24 0.00 30.64 2.29
513 514 8.370493 AGTGTATCCATATGTTCTGAAATTCG 57.630 34.615 1.24 0.00 0.00 3.34
514 515 8.204160 AGTGTATCCATATGTTCTGAAATTCGA 58.796 33.333 1.24 0.00 0.00 3.71
519 520 7.735917 TCCATATGTTCTGAAATTCGATAGGT 58.264 34.615 1.24 0.00 0.00 3.08
565 566 9.342308 TGAATTCCTCCAATGTTTCTATATCAC 57.658 33.333 2.27 0.00 0.00 3.06
588 589 4.527509 TTTTGAGTTGCTGTGTTCCAAA 57.472 36.364 0.00 0.00 0.00 3.28
593 594 0.459489 TTGCTGTGTTCCAAACTGGC 59.541 50.000 0.00 0.00 37.47 4.85
594 595 1.363807 GCTGTGTTCCAAACTGGCC 59.636 57.895 0.00 0.00 37.47 5.36
606 607 3.306019 CCAAACTGGCCCTTATGTTTGTC 60.306 47.826 21.97 0.00 44.26 3.18
611 612 1.448985 GCCCTTATGTTTGTCTGCGA 58.551 50.000 0.00 0.00 0.00 5.10
650 651 7.829378 AAAAACTCAATGTACTATCTCCGTC 57.171 36.000 0.00 0.00 0.00 4.79
651 652 6.777213 AAACTCAATGTACTATCTCCGTCT 57.223 37.500 0.00 0.00 0.00 4.18
652 653 7.876936 AAACTCAATGTACTATCTCCGTCTA 57.123 36.000 0.00 0.00 0.00 2.59
653 654 7.499321 AACTCAATGTACTATCTCCGTCTAG 57.501 40.000 0.00 0.00 0.00 2.43
654 655 5.998981 ACTCAATGTACTATCTCCGTCTAGG 59.001 44.000 0.00 0.00 42.97 3.02
655 656 5.938279 TCAATGTACTATCTCCGTCTAGGT 58.062 41.667 0.00 0.00 41.99 3.08
656 657 5.763698 TCAATGTACTATCTCCGTCTAGGTG 59.236 44.000 0.00 0.00 41.99 4.00
657 658 5.563876 ATGTACTATCTCCGTCTAGGTGA 57.436 43.478 0.00 0.00 45.47 4.02
658 659 5.363562 TGTACTATCTCCGTCTAGGTGAA 57.636 43.478 0.00 0.00 44.67 3.18
659 660 5.938279 TGTACTATCTCCGTCTAGGTGAAT 58.062 41.667 0.00 0.00 44.67 2.57
660 661 7.071069 TGTACTATCTCCGTCTAGGTGAATA 57.929 40.000 0.00 0.00 44.67 1.75
661 662 7.512130 TGTACTATCTCCGTCTAGGTGAATAA 58.488 38.462 0.00 0.00 44.67 1.40
662 663 7.660617 TGTACTATCTCCGTCTAGGTGAATAAG 59.339 40.741 0.00 0.00 44.67 1.73
663 664 6.603224 ACTATCTCCGTCTAGGTGAATAAGT 58.397 40.000 0.00 0.00 44.67 2.24
664 665 6.711645 ACTATCTCCGTCTAGGTGAATAAGTC 59.288 42.308 0.00 0.00 44.67 3.01
665 666 4.851843 TCTCCGTCTAGGTGAATAAGTCA 58.148 43.478 0.00 0.00 39.36 3.41
666 667 5.446860 TCTCCGTCTAGGTGAATAAGTCAT 58.553 41.667 0.00 0.00 39.36 3.06
667 668 5.892119 TCTCCGTCTAGGTGAATAAGTCATT 59.108 40.000 0.00 0.00 39.36 2.57
668 669 6.039493 TCTCCGTCTAGGTGAATAAGTCATTC 59.961 42.308 0.00 0.00 39.36 2.67
669 670 4.976731 CCGTCTAGGTGAATAAGTCATTCG 59.023 45.833 0.00 0.00 45.25 3.34
676 677 5.697848 GTGAATAAGTCATTCGCGTAGTT 57.302 39.130 5.77 2.59 45.25 2.24
677 678 6.091123 GTGAATAAGTCATTCGCGTAGTTT 57.909 37.500 5.77 0.00 45.25 2.66
678 679 6.531439 GTGAATAAGTCATTCGCGTAGTTTT 58.469 36.000 5.77 0.00 45.25 2.43
679 680 7.669098 GTGAATAAGTCATTCGCGTAGTTTTA 58.331 34.615 5.77 0.20 45.25 1.52
680 681 7.839837 GTGAATAAGTCATTCGCGTAGTTTTAG 59.160 37.037 5.77 0.00 45.25 1.85
681 682 6.823678 ATAAGTCATTCGCGTAGTTTTAGG 57.176 37.500 5.77 0.00 0.00 2.69
682 683 4.184079 AGTCATTCGCGTAGTTTTAGGT 57.816 40.909 5.77 0.00 0.00 3.08
683 684 4.563061 AGTCATTCGCGTAGTTTTAGGTT 58.437 39.130 5.77 0.00 0.00 3.50
684 685 4.387862 AGTCATTCGCGTAGTTTTAGGTTG 59.612 41.667 5.77 0.00 0.00 3.77
685 686 4.386652 GTCATTCGCGTAGTTTTAGGTTGA 59.613 41.667 5.77 0.00 0.00 3.18
686 687 4.386652 TCATTCGCGTAGTTTTAGGTTGAC 59.613 41.667 5.77 0.00 0.00 3.18
687 688 2.318578 TCGCGTAGTTTTAGGTTGACG 58.681 47.619 5.77 0.00 0.00 4.35
688 689 2.031245 TCGCGTAGTTTTAGGTTGACGA 60.031 45.455 5.77 0.00 32.20 4.20
689 690 2.919229 CGCGTAGTTTTAGGTTGACGAT 59.081 45.455 0.00 0.00 32.20 3.73
690 691 3.365820 CGCGTAGTTTTAGGTTGACGATT 59.634 43.478 0.00 0.00 32.20 3.34
691 692 4.143263 CGCGTAGTTTTAGGTTGACGATTT 60.143 41.667 0.00 0.00 32.20 2.17
692 693 5.060816 CGCGTAGTTTTAGGTTGACGATTTA 59.939 40.000 0.00 0.00 32.20 1.40
693 694 6.399880 CGCGTAGTTTTAGGTTGACGATTTAA 60.400 38.462 0.00 0.00 32.20 1.52
694 695 6.733725 GCGTAGTTTTAGGTTGACGATTTAAC 59.266 38.462 0.00 0.00 32.20 2.01
695 696 7.359514 GCGTAGTTTTAGGTTGACGATTTAACT 60.360 37.037 0.00 0.00 32.20 2.24
696 697 9.128107 CGTAGTTTTAGGTTGACGATTTAACTA 57.872 33.333 0.00 0.00 32.20 2.24
699 700 9.939802 AGTTTTAGGTTGACGATTTAACTATCT 57.060 29.630 0.00 0.00 0.00 1.98
756 757 6.585695 TTCTCGTTCCTACAGTTCTGTAAT 57.414 37.500 12.71 0.00 0.00 1.89
802 803 3.228188 TCTCATTTCTTGTGGTTGCCT 57.772 42.857 0.00 0.00 0.00 4.75
911 912 0.253347 AGGCCCCATCTTCTTCTCCA 60.253 55.000 0.00 0.00 0.00 3.86
923 926 8.654997 CCATCTTCTTCTCCATCCTCTATAAAA 58.345 37.037 0.00 0.00 0.00 1.52
939 942 9.092876 CCTCTATAAAACAAGCAAAACAAACAA 57.907 29.630 0.00 0.00 0.00 2.83
1351 1366 2.432628 CACGGTCGGAGCACTTCC 60.433 66.667 8.06 0.00 43.04 3.46
1353 1368 1.303888 ACGGTCGGAGCACTTCCTA 60.304 57.895 8.06 0.00 44.41 2.94
1460 1475 1.608717 GCGGAGGAGAGAAAGGAGCA 61.609 60.000 0.00 0.00 0.00 4.26
1463 1478 0.901124 GAGGAGAGAAAGGAGCAGCA 59.099 55.000 0.00 0.00 0.00 4.41
1596 1611 9.225436 TGTAGTATTACTATCTGAGCAGATGAG 57.775 37.037 20.26 15.32 46.80 2.90
1650 1672 2.352225 CGAGAGATATTTCAGGCGGAGG 60.352 54.545 0.00 0.00 0.00 4.30
1708 1730 1.211969 CCGAGGACGAAGAAGCGAA 59.788 57.895 0.00 0.00 42.66 4.70
2089 2111 4.315803 TCAGGAACTCGTTTTGATTCCTC 58.684 43.478 1.36 0.00 46.45 3.71
2092 2114 3.685272 GGAACTCGTTTTGATTCCTCCTC 59.315 47.826 0.00 0.00 38.08 3.71
2212 2235 0.249489 ACTAATCGATGCTGACCCGC 60.249 55.000 0.00 0.00 0.00 6.13
2229 2252 2.099592 CCCGCTACTCCATTAACGTGTA 59.900 50.000 0.00 0.00 0.00 2.90
2230 2253 3.111098 CCGCTACTCCATTAACGTGTAC 58.889 50.000 0.00 0.00 0.00 2.90
2231 2254 3.181493 CCGCTACTCCATTAACGTGTACT 60.181 47.826 0.00 0.00 0.00 2.73
2232 2255 4.033684 CGCTACTCCATTAACGTGTACTC 58.966 47.826 0.00 0.00 0.00 2.59
2233 2256 4.357996 GCTACTCCATTAACGTGTACTCC 58.642 47.826 0.00 0.00 0.00 3.85
2234 2257 4.097589 GCTACTCCATTAACGTGTACTCCT 59.902 45.833 0.00 0.00 0.00 3.69
2235 2258 5.297776 GCTACTCCATTAACGTGTACTCCTA 59.702 44.000 0.00 0.00 0.00 2.94
2285 2308 8.199449 CCATTGACCATACTTGCATATTCTTTT 58.801 33.333 0.00 0.00 0.00 2.27
2317 2349 1.547820 TGTGCTCTCTCTGTTGCTAGG 59.452 52.381 0.00 0.00 0.00 3.02
2324 2356 0.173481 CTCTGTTGCTAGGCTGCGTA 59.827 55.000 0.00 1.79 35.36 4.42
2340 2372 5.449862 GGCTGCGTATTCATGGATTGTAAAA 60.450 40.000 0.00 0.00 0.00 1.52
2341 2373 6.208644 GCTGCGTATTCATGGATTGTAAAAT 58.791 36.000 0.00 0.00 0.00 1.82
2342 2374 7.359595 GCTGCGTATTCATGGATTGTAAAATA 58.640 34.615 0.00 0.00 0.00 1.40
2343 2375 8.023128 GCTGCGTATTCATGGATTGTAAAATAT 58.977 33.333 0.00 0.00 0.00 1.28
2360 2392 7.552687 TGTAAAATATAAGTGAGCCAACTCTGG 59.447 37.037 0.00 0.00 46.65 3.86
2370 2402 4.534500 TGAGCCAACTCTGGTTAATCCTTA 59.466 41.667 0.00 0.00 45.53 2.69
2383 2415 9.354673 CTGGTTAATCCTTAACATATTCATGGT 57.645 33.333 10.85 0.00 45.63 3.55
2389 2421 8.691661 ATCCTTAACATATTCATGGTGGTTAC 57.308 34.615 0.00 0.00 36.39 2.50
2392 2424 9.052759 CCTTAACATATTCATGGTGGTTACTAC 57.947 37.037 0.00 0.00 36.39 2.73
2439 2471 1.291588 CAAGAGCTGCGTCTCCAGT 59.708 57.895 0.00 0.00 35.28 4.00
2461 2493 2.873094 TCTTGAGTAGGTCCAGACGA 57.127 50.000 0.00 0.00 0.00 4.20
2491 2526 0.035176 CAAACCATTGCCCCTTGTGG 59.965 55.000 0.00 0.00 37.74 4.17
2550 2585 1.181786 CCGGCTTCCCTTTAATGCAA 58.818 50.000 0.00 0.00 0.00 4.08
2727 2763 4.084693 GCTAGTAATTCCGACCGTAATTGC 60.085 45.833 3.72 2.65 0.00 3.56
2857 2893 4.922471 TTTTTGAAAGACCCGGTTTAGG 57.078 40.909 0.00 0.00 0.00 2.69
2858 2894 1.900245 TTGAAAGACCCGGTTTAGGC 58.100 50.000 0.00 0.00 0.00 3.93
2859 2895 0.037160 TGAAAGACCCGGTTTAGGCC 59.963 55.000 0.00 0.00 0.00 5.19
2869 2905 2.647529 GGTTTAGGCCGGTTTCATTG 57.352 50.000 1.90 0.00 0.00 2.82
2870 2906 2.164338 GGTTTAGGCCGGTTTCATTGA 58.836 47.619 1.90 0.00 0.00 2.57
2871 2907 2.758423 GGTTTAGGCCGGTTTCATTGAT 59.242 45.455 1.90 0.00 0.00 2.57
2872 2908 3.194755 GGTTTAGGCCGGTTTCATTGATT 59.805 43.478 1.90 0.00 0.00 2.57
2873 2909 4.322424 GGTTTAGGCCGGTTTCATTGATTT 60.322 41.667 1.90 0.00 0.00 2.17
2874 2910 5.105675 GGTTTAGGCCGGTTTCATTGATTTA 60.106 40.000 1.90 0.00 0.00 1.40
2875 2911 5.828299 TTAGGCCGGTTTCATTGATTTAG 57.172 39.130 1.90 0.00 0.00 1.85
2876 2912 3.023832 AGGCCGGTTTCATTGATTTAGG 58.976 45.455 1.90 0.00 0.00 2.69
2877 2913 3.020984 GGCCGGTTTCATTGATTTAGGA 58.979 45.455 1.90 0.00 0.00 2.94
2878 2914 3.066760 GGCCGGTTTCATTGATTTAGGAG 59.933 47.826 1.90 0.00 0.00 3.69
2879 2915 3.945285 GCCGGTTTCATTGATTTAGGAGA 59.055 43.478 1.90 0.00 0.00 3.71
2880 2916 4.398044 GCCGGTTTCATTGATTTAGGAGAA 59.602 41.667 1.90 0.00 0.00 2.87
2881 2917 5.105917 GCCGGTTTCATTGATTTAGGAGAAA 60.106 40.000 1.90 0.00 0.00 2.52
2882 2918 6.555315 CCGGTTTCATTGATTTAGGAGAAAG 58.445 40.000 0.00 0.00 0.00 2.62
2883 2919 6.030228 CGGTTTCATTGATTTAGGAGAAAGC 58.970 40.000 0.00 0.00 39.03 3.51
2884 2920 6.349280 CGGTTTCATTGATTTAGGAGAAAGCA 60.349 38.462 13.12 0.00 41.11 3.91
2885 2921 7.550712 GGTTTCATTGATTTAGGAGAAAGCAT 58.449 34.615 0.00 0.00 40.89 3.79
2886 2922 8.686334 GGTTTCATTGATTTAGGAGAAAGCATA 58.314 33.333 0.00 0.00 40.89 3.14
2887 2923 9.508567 GTTTCATTGATTTAGGAGAAAGCATAC 57.491 33.333 0.00 0.00 0.00 2.39
2888 2924 7.482654 TCATTGATTTAGGAGAAAGCATACG 57.517 36.000 0.00 0.00 0.00 3.06
2889 2925 7.272244 TCATTGATTTAGGAGAAAGCATACGA 58.728 34.615 0.00 0.00 0.00 3.43
2890 2926 7.768582 TCATTGATTTAGGAGAAAGCATACGAA 59.231 33.333 0.00 0.00 0.00 3.85
2891 2927 7.915293 TTGATTTAGGAGAAAGCATACGAAA 57.085 32.000 0.00 0.00 0.00 3.46
2892 2928 7.915293 TGATTTAGGAGAAAGCATACGAAAA 57.085 32.000 0.00 0.00 0.00 2.29
2893 2929 8.330466 TGATTTAGGAGAAAGCATACGAAAAA 57.670 30.769 0.00 0.00 0.00 1.94
2894 2930 8.234546 TGATTTAGGAGAAAGCATACGAAAAAC 58.765 33.333 0.00 0.00 0.00 2.43
2895 2931 7.499321 TTTAGGAGAAAGCATACGAAAAACA 57.501 32.000 0.00 0.00 0.00 2.83
2896 2932 7.499321 TTAGGAGAAAGCATACGAAAAACAA 57.501 32.000 0.00 0.00 0.00 2.83
2897 2933 6.002062 AGGAGAAAGCATACGAAAAACAAG 57.998 37.500 0.00 0.00 0.00 3.16
2898 2934 4.617223 GGAGAAAGCATACGAAAAACAAGC 59.383 41.667 0.00 0.00 0.00 4.01
2899 2935 4.219033 AGAAAGCATACGAAAAACAAGCG 58.781 39.130 0.00 0.00 0.00 4.68
2900 2936 2.611974 AGCATACGAAAAACAAGCGG 57.388 45.000 0.00 0.00 0.00 5.52
2901 2937 1.199097 AGCATACGAAAAACAAGCGGG 59.801 47.619 0.00 0.00 0.00 6.13
2902 2938 1.731098 GCATACGAAAAACAAGCGGGG 60.731 52.381 0.00 0.00 0.00 5.73
2903 2939 1.807742 CATACGAAAAACAAGCGGGGA 59.192 47.619 0.00 0.00 0.00 4.81
2904 2940 2.188062 TACGAAAAACAAGCGGGGAT 57.812 45.000 0.00 0.00 0.00 3.85
2905 2941 0.879090 ACGAAAAACAAGCGGGGATC 59.121 50.000 0.00 0.00 0.00 3.36
2906 2942 0.878416 CGAAAAACAAGCGGGGATCA 59.122 50.000 0.00 0.00 0.00 2.92
2907 2943 1.268352 CGAAAAACAAGCGGGGATCAA 59.732 47.619 0.00 0.00 0.00 2.57
2908 2944 2.668279 CGAAAAACAAGCGGGGATCAAG 60.668 50.000 0.00 0.00 0.00 3.02
2909 2945 1.995376 AAAACAAGCGGGGATCAAGT 58.005 45.000 0.00 0.00 0.00 3.16
2910 2946 1.247567 AAACAAGCGGGGATCAAGTG 58.752 50.000 0.00 0.00 0.00 3.16
2911 2947 0.400213 AACAAGCGGGGATCAAGTGA 59.600 50.000 0.00 0.00 0.00 3.41
2912 2948 0.620556 ACAAGCGGGGATCAAGTGAT 59.379 50.000 0.00 0.00 37.51 3.06
2923 2959 3.770263 ATCAAGTGATCATGGCAAACG 57.230 42.857 0.00 0.00 0.00 3.60
2924 2960 1.811965 TCAAGTGATCATGGCAAACGG 59.188 47.619 0.00 0.00 0.00 4.44
2925 2961 1.811965 CAAGTGATCATGGCAAACGGA 59.188 47.619 0.00 0.00 0.00 4.69
2926 2962 2.198827 AGTGATCATGGCAAACGGAA 57.801 45.000 0.00 0.00 0.00 4.30
2927 2963 2.513753 AGTGATCATGGCAAACGGAAA 58.486 42.857 0.00 0.00 0.00 3.13
2928 2964 2.890311 AGTGATCATGGCAAACGGAAAA 59.110 40.909 0.00 0.00 0.00 2.29
2929 2965 3.320541 AGTGATCATGGCAAACGGAAAAA 59.679 39.130 0.00 0.00 0.00 1.94
2930 2966 3.674753 GTGATCATGGCAAACGGAAAAAG 59.325 43.478 0.00 0.00 0.00 2.27
2931 2967 2.147436 TCATGGCAAACGGAAAAAGC 57.853 45.000 0.00 0.00 0.00 3.51
2932 2968 1.686052 TCATGGCAAACGGAAAAAGCT 59.314 42.857 0.00 0.00 0.00 3.74
2933 2969 2.061028 CATGGCAAACGGAAAAAGCTC 58.939 47.619 0.00 0.00 0.00 4.09
2934 2970 1.107114 TGGCAAACGGAAAAAGCTCA 58.893 45.000 0.00 0.00 0.00 4.26
2935 2971 1.202359 TGGCAAACGGAAAAAGCTCAC 60.202 47.619 0.00 0.00 0.00 3.51
2936 2972 1.202359 GGCAAACGGAAAAAGCTCACA 60.202 47.619 0.00 0.00 0.00 3.58
2937 2973 2.535331 GCAAACGGAAAAAGCTCACAA 58.465 42.857 0.00 0.00 0.00 3.33
2938 2974 2.535574 GCAAACGGAAAAAGCTCACAAG 59.464 45.455 0.00 0.00 0.00 3.16
2939 2975 3.733684 GCAAACGGAAAAAGCTCACAAGA 60.734 43.478 0.00 0.00 0.00 3.02
2940 2976 3.971032 AACGGAAAAAGCTCACAAGAG 57.029 42.857 0.00 0.00 44.96 2.85
2953 2989 5.947228 CTCACAAGAGCATGGAAACTAAA 57.053 39.130 0.00 0.00 34.61 1.85
2954 2990 6.317789 CTCACAAGAGCATGGAAACTAAAA 57.682 37.500 0.00 0.00 34.61 1.52
2955 2991 6.707440 TCACAAGAGCATGGAAACTAAAAA 57.293 33.333 0.00 0.00 0.00 1.94
2956 2992 6.738114 TCACAAGAGCATGGAAACTAAAAAG 58.262 36.000 0.00 0.00 0.00 2.27
2957 2993 6.545666 TCACAAGAGCATGGAAACTAAAAAGA 59.454 34.615 0.00 0.00 0.00 2.52
2958 2994 7.068103 TCACAAGAGCATGGAAACTAAAAAGAA 59.932 33.333 0.00 0.00 0.00 2.52
2959 2995 7.706179 CACAAGAGCATGGAAACTAAAAAGAAA 59.294 33.333 0.00 0.00 0.00 2.52
2960 2996 8.257306 ACAAGAGCATGGAAACTAAAAAGAAAA 58.743 29.630 0.00 0.00 0.00 2.29
2961 2997 8.542953 CAAGAGCATGGAAACTAAAAAGAAAAC 58.457 33.333 0.00 0.00 0.00 2.43
2962 2998 6.918022 AGAGCATGGAAACTAAAAAGAAAACG 59.082 34.615 0.00 0.00 0.00 3.60
2963 2999 5.983118 AGCATGGAAACTAAAAAGAAAACGG 59.017 36.000 0.00 0.00 0.00 4.44
2964 3000 5.333035 GCATGGAAACTAAAAAGAAAACGGC 60.333 40.000 0.00 0.00 0.00 5.68
2965 3001 4.352887 TGGAAACTAAAAAGAAAACGGCG 58.647 39.130 4.80 4.80 0.00 6.46
2966 3002 4.096081 TGGAAACTAAAAAGAAAACGGCGA 59.904 37.500 16.62 0.00 0.00 5.54
2967 3003 5.217393 GGAAACTAAAAAGAAAACGGCGAT 58.783 37.500 16.62 0.00 0.00 4.58
2968 3004 5.116528 GGAAACTAAAAAGAAAACGGCGATG 59.883 40.000 16.62 0.00 0.00 3.84
2969 3005 5.427036 AACTAAAAAGAAAACGGCGATGA 57.573 34.783 16.62 0.00 0.00 2.92
2970 3006 5.622770 ACTAAAAAGAAAACGGCGATGAT 57.377 34.783 16.62 0.00 0.00 2.45
2971 3007 5.390613 ACTAAAAAGAAAACGGCGATGATG 58.609 37.500 16.62 0.00 0.00 3.07
2972 3008 2.919666 AAAGAAAACGGCGATGATGG 57.080 45.000 16.62 0.00 0.00 3.51
2973 3009 0.451783 AAGAAAACGGCGATGATGGC 59.548 50.000 16.62 0.00 0.00 4.40
2980 3016 1.005037 GGCGATGATGGCGTCCATA 60.005 57.895 10.74 2.26 45.26 2.74
2981 3017 1.016130 GGCGATGATGGCGTCCATAG 61.016 60.000 10.74 0.00 45.26 2.23
2982 3018 0.038251 GCGATGATGGCGTCCATAGA 60.038 55.000 10.74 2.85 45.26 1.98
2983 3019 1.702886 CGATGATGGCGTCCATAGAC 58.297 55.000 10.74 5.43 45.26 2.59
2991 3027 4.655527 GTCCATAGACGCCCATCG 57.344 61.111 0.00 0.00 45.38 3.84
3001 3037 3.967886 CGCCCATCGTGATCTTACT 57.032 52.632 0.00 0.00 0.00 2.24
3002 3038 1.491670 CGCCCATCGTGATCTTACTG 58.508 55.000 0.00 0.00 0.00 2.74
3003 3039 1.221414 GCCCATCGTGATCTTACTGC 58.779 55.000 0.00 0.00 0.00 4.40
3004 3040 1.871080 CCCATCGTGATCTTACTGCC 58.129 55.000 0.00 0.00 0.00 4.85
3005 3041 1.414181 CCCATCGTGATCTTACTGCCT 59.586 52.381 0.00 0.00 0.00 4.75
3006 3042 2.158900 CCCATCGTGATCTTACTGCCTT 60.159 50.000 0.00 0.00 0.00 4.35
3007 3043 2.868583 CCATCGTGATCTTACTGCCTTG 59.131 50.000 0.00 0.00 0.00 3.61
3008 3044 2.010145 TCGTGATCTTACTGCCTTGC 57.990 50.000 0.00 0.00 0.00 4.01
3009 3045 1.550524 TCGTGATCTTACTGCCTTGCT 59.449 47.619 0.00 0.00 0.00 3.91
3010 3046 1.662629 CGTGATCTTACTGCCTTGCTG 59.337 52.381 0.00 0.00 0.00 4.41
3011 3047 1.399791 GTGATCTTACTGCCTTGCTGC 59.600 52.381 0.00 0.00 0.00 5.25
3012 3048 1.280133 TGATCTTACTGCCTTGCTGCT 59.720 47.619 0.00 0.00 0.00 4.24
3013 3049 1.669779 GATCTTACTGCCTTGCTGCTG 59.330 52.381 0.00 0.00 36.39 4.41
3014 3050 0.397941 TCTTACTGCCTTGCTGCTGT 59.602 50.000 0.00 9.88 44.29 4.40
3015 3051 0.520404 CTTACTGCCTTGCTGCTGTG 59.480 55.000 13.30 0.00 42.43 3.66
3016 3052 0.179020 TTACTGCCTTGCTGCTGTGT 60.179 50.000 13.30 0.00 42.43 3.72
3017 3053 0.603707 TACTGCCTTGCTGCTGTGTC 60.604 55.000 13.30 0.00 42.43 3.67
3018 3054 2.595463 TGCCTTGCTGCTGTGTCC 60.595 61.111 0.00 0.00 0.00 4.02
3019 3055 3.368571 GCCTTGCTGCTGTGTCCC 61.369 66.667 0.00 0.00 0.00 4.46
3020 3056 2.674380 CCTTGCTGCTGTGTCCCC 60.674 66.667 0.00 0.00 0.00 4.81
3021 3057 3.052082 CTTGCTGCTGTGTCCCCG 61.052 66.667 0.00 0.00 0.00 5.73
3022 3058 3.535629 CTTGCTGCTGTGTCCCCGA 62.536 63.158 0.00 0.00 0.00 5.14
3023 3059 3.113514 TTGCTGCTGTGTCCCCGAA 62.114 57.895 0.00 0.00 0.00 4.30
3024 3060 3.050275 GCTGCTGTGTCCCCGAAC 61.050 66.667 0.00 0.00 0.00 3.95
3025 3061 2.738521 CTGCTGTGTCCCCGAACG 60.739 66.667 0.00 0.00 0.00 3.95
3026 3062 4.308458 TGCTGTGTCCCCGAACGG 62.308 66.667 6.25 6.25 0.00 4.44
3037 3073 2.452767 CCGAACGGGTGCTCTAAAC 58.547 57.895 5.25 0.00 0.00 2.01
3038 3074 0.320073 CCGAACGGGTGCTCTAAACA 60.320 55.000 5.25 0.00 0.00 2.83
3039 3075 1.674817 CCGAACGGGTGCTCTAAACAT 60.675 52.381 5.25 0.00 0.00 2.71
3040 3076 1.393539 CGAACGGGTGCTCTAAACATG 59.606 52.381 0.00 0.00 0.00 3.21
3041 3077 1.130561 GAACGGGTGCTCTAAACATGC 59.869 52.381 0.00 0.00 0.00 4.06
3042 3078 1.019278 ACGGGTGCTCTAAACATGCG 61.019 55.000 0.00 0.00 0.00 4.73
3043 3079 0.739462 CGGGTGCTCTAAACATGCGA 60.739 55.000 0.00 0.00 0.00 5.10
3044 3080 0.727398 GGGTGCTCTAAACATGCGAC 59.273 55.000 0.00 0.00 0.00 5.19
3045 3081 1.676014 GGGTGCTCTAAACATGCGACT 60.676 52.381 0.00 0.00 0.00 4.18
3046 3082 1.661112 GGTGCTCTAAACATGCGACTC 59.339 52.381 0.00 0.00 0.00 3.36
3047 3083 1.661112 GTGCTCTAAACATGCGACTCC 59.339 52.381 0.00 0.00 0.00 3.85
3048 3084 1.275010 TGCTCTAAACATGCGACTCCA 59.725 47.619 0.00 0.00 0.00 3.86
3049 3085 1.929836 GCTCTAAACATGCGACTCCAG 59.070 52.381 0.00 0.00 0.00 3.86
3050 3086 1.929836 CTCTAAACATGCGACTCCAGC 59.070 52.381 0.00 0.00 0.00 4.85
3056 3092 4.024717 TGCGACTCCAGCAGATCT 57.975 55.556 0.00 0.00 40.01 2.75
3057 3093 1.812525 TGCGACTCCAGCAGATCTC 59.187 57.895 0.00 0.00 40.01 2.75
3058 3094 1.067250 GCGACTCCAGCAGATCTCC 59.933 63.158 0.00 0.00 34.19 3.71
3059 3095 1.670949 GCGACTCCAGCAGATCTCCA 61.671 60.000 0.00 0.00 34.19 3.86
3060 3096 0.820226 CGACTCCAGCAGATCTCCAA 59.180 55.000 0.00 0.00 0.00 3.53
3061 3097 1.202394 CGACTCCAGCAGATCTCCAAG 60.202 57.143 0.00 0.00 0.00 3.61
3062 3098 2.106566 GACTCCAGCAGATCTCCAAGA 58.893 52.381 0.00 0.00 0.00 3.02
3063 3099 1.830477 ACTCCAGCAGATCTCCAAGAC 59.170 52.381 0.00 0.00 0.00 3.01
3064 3100 0.820226 TCCAGCAGATCTCCAAGACG 59.180 55.000 0.00 0.00 0.00 4.18
3065 3101 0.809241 CCAGCAGATCTCCAAGACGC 60.809 60.000 0.00 0.00 0.00 5.19
3066 3102 0.108472 CAGCAGATCTCCAAGACGCA 60.108 55.000 0.00 0.00 0.00 5.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.728845 GCTTTATCTATGAAGCGGGACA 58.271 45.455 4.01 0.00 39.16 4.02
6 7 9.604626 GTATTGATGTTGCTTTATCTATGAAGC 57.395 33.333 11.40 11.40 46.08 3.86
10 11 9.669353 GGTTGTATTGATGTTGCTTTATCTATG 57.331 33.333 0.00 0.00 0.00 2.23
11 12 9.407380 TGGTTGTATTGATGTTGCTTTATCTAT 57.593 29.630 0.00 0.00 0.00 1.98
12 13 8.800370 TGGTTGTATTGATGTTGCTTTATCTA 57.200 30.769 0.00 0.00 0.00 1.98
13 14 7.701539 TGGTTGTATTGATGTTGCTTTATCT 57.298 32.000 0.00 0.00 0.00 1.98
14 15 8.647226 GTTTGGTTGTATTGATGTTGCTTTATC 58.353 33.333 0.00 0.00 0.00 1.75
15 16 8.367156 AGTTTGGTTGTATTGATGTTGCTTTAT 58.633 29.630 0.00 0.00 0.00 1.40
16 17 7.651304 CAGTTTGGTTGTATTGATGTTGCTTTA 59.349 33.333 0.00 0.00 0.00 1.85
17 18 6.479660 CAGTTTGGTTGTATTGATGTTGCTTT 59.520 34.615 0.00 0.00 0.00 3.51
18 19 5.984926 CAGTTTGGTTGTATTGATGTTGCTT 59.015 36.000 0.00 0.00 0.00 3.91
19 20 5.509501 CCAGTTTGGTTGTATTGATGTTGCT 60.510 40.000 0.00 0.00 31.35 3.91
20 21 4.685628 CCAGTTTGGTTGTATTGATGTTGC 59.314 41.667 0.00 0.00 31.35 4.17
35 36 4.003648 GGACATCTAGTTGACCAGTTTGG 58.996 47.826 14.90 0.00 45.02 3.28
36 37 4.641396 TGGACATCTAGTTGACCAGTTTG 58.359 43.478 17.56 0.00 36.69 2.93
37 38 4.974645 TGGACATCTAGTTGACCAGTTT 57.025 40.909 17.56 0.00 36.69 2.66
38 39 4.974645 TTGGACATCTAGTTGACCAGTT 57.025 40.909 19.62 0.00 41.33 3.16
39 40 4.974645 TTTGGACATCTAGTTGACCAGT 57.025 40.909 19.62 0.00 41.33 4.00
40 41 7.921786 TTAATTTGGACATCTAGTTGACCAG 57.078 36.000 19.62 0.00 41.33 4.00
41 42 8.698973 TTTTAATTTGGACATCTAGTTGACCA 57.301 30.769 17.56 17.56 39.20 4.02
42 43 9.406828 GTTTTTAATTTGGACATCTAGTTGACC 57.593 33.333 13.43 13.43 32.88 4.02
43 44 9.959749 TGTTTTTAATTTGGACATCTAGTTGAC 57.040 29.630 7.81 1.48 0.00 3.18
53 54 9.712305 TCTCTGTTTTTGTTTTTAATTTGGACA 57.288 25.926 0.00 0.00 0.00 4.02
61 62 9.680315 TCTCGTTTTCTCTGTTTTTGTTTTTAA 57.320 25.926 0.00 0.00 0.00 1.52
62 63 9.337091 CTCTCGTTTTCTCTGTTTTTGTTTTTA 57.663 29.630 0.00 0.00 0.00 1.52
63 64 7.328493 CCTCTCGTTTTCTCTGTTTTTGTTTTT 59.672 33.333 0.00 0.00 0.00 1.94
64 65 6.806739 CCTCTCGTTTTCTCTGTTTTTGTTTT 59.193 34.615 0.00 0.00 0.00 2.43
65 66 6.150474 TCCTCTCGTTTTCTCTGTTTTTGTTT 59.850 34.615 0.00 0.00 0.00 2.83
66 67 5.646360 TCCTCTCGTTTTCTCTGTTTTTGTT 59.354 36.000 0.00 0.00 0.00 2.83
67 68 5.183228 TCCTCTCGTTTTCTCTGTTTTTGT 58.817 37.500 0.00 0.00 0.00 2.83
68 69 5.523916 TCTCCTCTCGTTTTCTCTGTTTTTG 59.476 40.000 0.00 0.00 0.00 2.44
69 70 5.671493 TCTCCTCTCGTTTTCTCTGTTTTT 58.329 37.500 0.00 0.00 0.00 1.94
70 71 5.069251 TCTCTCCTCTCGTTTTCTCTGTTTT 59.931 40.000 0.00 0.00 0.00 2.43
71 72 4.585162 TCTCTCCTCTCGTTTTCTCTGTTT 59.415 41.667 0.00 0.00 0.00 2.83
72 73 4.145807 TCTCTCCTCTCGTTTTCTCTGTT 58.854 43.478 0.00 0.00 0.00 3.16
73 74 3.757270 TCTCTCCTCTCGTTTTCTCTGT 58.243 45.455 0.00 0.00 0.00 3.41
74 75 4.775058 TTCTCTCCTCTCGTTTTCTCTG 57.225 45.455 0.00 0.00 0.00 3.35
75 76 5.013547 TCATTCTCTCCTCTCGTTTTCTCT 58.986 41.667 0.00 0.00 0.00 3.10
76 77 5.317733 TCATTCTCTCCTCTCGTTTTCTC 57.682 43.478 0.00 0.00 0.00 2.87
77 78 5.245075 ACTTCATTCTCTCCTCTCGTTTTCT 59.755 40.000 0.00 0.00 0.00 2.52
78 79 5.474825 ACTTCATTCTCTCCTCTCGTTTTC 58.525 41.667 0.00 0.00 0.00 2.29
79 80 5.245075 AGACTTCATTCTCTCCTCTCGTTTT 59.755 40.000 0.00 0.00 0.00 2.43
80 81 4.770010 AGACTTCATTCTCTCCTCTCGTTT 59.230 41.667 0.00 0.00 0.00 3.60
81 82 4.340617 AGACTTCATTCTCTCCTCTCGTT 58.659 43.478 0.00 0.00 0.00 3.85
82 83 3.945285 GAGACTTCATTCTCTCCTCTCGT 59.055 47.826 0.00 0.00 39.26 4.18
83 84 3.002246 CGAGACTTCATTCTCTCCTCTCG 59.998 52.174 0.00 0.00 40.07 4.04
84 85 3.315191 CCGAGACTTCATTCTCTCCTCTC 59.685 52.174 0.00 0.00 40.07 3.20
85 86 3.287222 CCGAGACTTCATTCTCTCCTCT 58.713 50.000 0.00 0.00 40.07 3.69
86 87 2.223711 GCCGAGACTTCATTCTCTCCTC 60.224 54.545 0.00 0.00 40.07 3.71
87 88 1.754226 GCCGAGACTTCATTCTCTCCT 59.246 52.381 0.00 0.00 40.07 3.69
88 89 1.754226 AGCCGAGACTTCATTCTCTCC 59.246 52.381 0.00 0.00 40.07 3.71
89 90 2.808244 CAGCCGAGACTTCATTCTCTC 58.192 52.381 0.00 0.00 40.07 3.20
90 91 1.134848 GCAGCCGAGACTTCATTCTCT 60.135 52.381 0.00 0.00 40.07 3.10
91 92 1.285578 GCAGCCGAGACTTCATTCTC 58.714 55.000 0.00 0.00 39.01 2.87
92 93 0.459237 CGCAGCCGAGACTTCATTCT 60.459 55.000 0.00 0.00 36.29 2.40
93 94 1.424493 CCGCAGCCGAGACTTCATTC 61.424 60.000 0.00 0.00 36.29 2.67
94 95 1.448540 CCGCAGCCGAGACTTCATT 60.449 57.895 0.00 0.00 36.29 2.57
95 96 2.185350 CCGCAGCCGAGACTTCAT 59.815 61.111 0.00 0.00 36.29 2.57
96 97 4.069232 CCCGCAGCCGAGACTTCA 62.069 66.667 0.00 0.00 36.29 3.02
105 106 4.645921 GTTGTTGTGCCCGCAGCC 62.646 66.667 0.00 0.00 42.71 4.85
106 107 3.898509 TGTTGTTGTGCCCGCAGC 61.899 61.111 0.00 0.00 44.14 5.25
107 108 2.026014 GTGTTGTTGTGCCCGCAG 59.974 61.111 0.00 0.00 0.00 5.18
108 109 0.819666 TATGTGTTGTTGTGCCCGCA 60.820 50.000 0.00 0.00 0.00 5.69
109 110 0.312416 TTATGTGTTGTTGTGCCCGC 59.688 50.000 0.00 0.00 0.00 6.13
110 111 1.665735 GCTTATGTGTTGTTGTGCCCG 60.666 52.381 0.00 0.00 0.00 6.13
111 112 1.336795 GGCTTATGTGTTGTTGTGCCC 60.337 52.381 0.00 0.00 33.66 5.36
112 113 1.339610 TGGCTTATGTGTTGTTGTGCC 59.660 47.619 0.00 0.00 39.53 5.01
113 114 2.293122 TCTGGCTTATGTGTTGTTGTGC 59.707 45.455 0.00 0.00 0.00 4.57
114 115 3.610114 GCTCTGGCTTATGTGTTGTTGTG 60.610 47.826 0.00 0.00 35.22 3.33
115 116 2.554032 GCTCTGGCTTATGTGTTGTTGT 59.446 45.455 0.00 0.00 35.22 3.32
116 117 2.553602 TGCTCTGGCTTATGTGTTGTTG 59.446 45.455 0.00 0.00 39.59 3.33
117 118 2.862541 TGCTCTGGCTTATGTGTTGTT 58.137 42.857 0.00 0.00 39.59 2.83
118 119 2.566833 TGCTCTGGCTTATGTGTTGT 57.433 45.000 0.00 0.00 39.59 3.32
119 120 3.921119 TTTGCTCTGGCTTATGTGTTG 57.079 42.857 0.00 0.00 39.59 3.33
120 121 5.476599 TGTATTTTGCTCTGGCTTATGTGTT 59.523 36.000 0.00 0.00 39.59 3.32
121 122 5.009631 TGTATTTTGCTCTGGCTTATGTGT 58.990 37.500 0.00 0.00 39.59 3.72
122 123 5.565592 TGTATTTTGCTCTGGCTTATGTG 57.434 39.130 0.00 0.00 39.59 3.21
123 124 5.945784 TCTTGTATTTTGCTCTGGCTTATGT 59.054 36.000 0.00 0.00 39.59 2.29
124 125 6.441093 TCTTGTATTTTGCTCTGGCTTATG 57.559 37.500 0.00 0.00 39.59 1.90
125 126 7.775093 TGTATCTTGTATTTTGCTCTGGCTTAT 59.225 33.333 0.00 0.00 39.59 1.73
126 127 7.109501 TGTATCTTGTATTTTGCTCTGGCTTA 58.890 34.615 0.00 0.00 39.59 3.09
127 128 5.945784 TGTATCTTGTATTTTGCTCTGGCTT 59.054 36.000 0.00 0.00 39.59 4.35
128 129 5.500234 TGTATCTTGTATTTTGCTCTGGCT 58.500 37.500 0.00 0.00 39.59 4.75
129 130 5.818136 TGTATCTTGTATTTTGCTCTGGC 57.182 39.130 0.00 0.00 39.26 4.85
130 131 6.769822 AGGATGTATCTTGTATTTTGCTCTGG 59.230 38.462 0.00 0.00 0.00 3.86
131 132 7.496920 TGAGGATGTATCTTGTATTTTGCTCTG 59.503 37.037 0.00 0.00 0.00 3.35
132 133 7.568349 TGAGGATGTATCTTGTATTTTGCTCT 58.432 34.615 0.00 0.00 0.00 4.09
133 134 7.792374 TGAGGATGTATCTTGTATTTTGCTC 57.208 36.000 0.00 0.00 0.00 4.26
134 135 7.284034 CCTTGAGGATGTATCTTGTATTTTGCT 59.716 37.037 0.00 0.00 37.39 3.91
135 136 7.420800 CCTTGAGGATGTATCTTGTATTTTGC 58.579 38.462 0.00 0.00 37.39 3.68
136 137 7.013655 CCCCTTGAGGATGTATCTTGTATTTTG 59.986 40.741 0.00 0.00 38.24 2.44
137 138 7.062957 CCCCTTGAGGATGTATCTTGTATTTT 58.937 38.462 0.00 0.00 38.24 1.82
138 139 6.410853 CCCCCTTGAGGATGTATCTTGTATTT 60.411 42.308 0.00 0.00 38.24 1.40
139 140 5.073691 CCCCCTTGAGGATGTATCTTGTATT 59.926 44.000 0.00 0.00 38.24 1.89
140 141 4.599241 CCCCCTTGAGGATGTATCTTGTAT 59.401 45.833 0.00 0.00 38.24 2.29
141 142 3.973973 CCCCCTTGAGGATGTATCTTGTA 59.026 47.826 0.00 0.00 38.24 2.41
142 143 2.780010 CCCCCTTGAGGATGTATCTTGT 59.220 50.000 0.00 0.00 38.24 3.16
143 144 3.498774 CCCCCTTGAGGATGTATCTTG 57.501 52.381 0.00 0.00 38.24 3.02
164 165 0.466124 GCCTCCTGATGGTCACCTAC 59.534 60.000 0.00 0.00 34.23 3.18
171 172 2.679716 GGCTTGCCTCCTGATGGT 59.320 61.111 4.11 0.00 34.23 3.55
183 184 2.325583 TATAAGGAACTGGCGGCTTG 57.674 50.000 11.43 5.73 40.86 4.01
184 185 2.706190 AGATATAAGGAACTGGCGGCTT 59.294 45.455 11.43 0.00 40.86 4.35
191 192 7.118496 ACTGACAAGGAGATATAAGGAACTG 57.882 40.000 0.00 0.00 40.86 3.16
228 229 2.103042 CCAAGTGGCGTGCTAGAGC 61.103 63.158 0.00 0.00 42.50 4.09
234 235 2.639286 CTTGTCCAAGTGGCGTGC 59.361 61.111 0.00 0.00 33.87 5.34
236 237 2.113139 CCCTTGTCCAAGTGGCGT 59.887 61.111 6.31 0.00 36.72 5.68
241 242 1.774217 TGGAGGCCCTTGTCCAAGT 60.774 57.895 8.96 0.00 40.01 3.16
260 261 5.734855 AAATATGTGGATTCTTTCGACCG 57.265 39.130 0.00 0.00 32.47 4.79
273 274 7.009265 CACCGACGCTATCTATAAAATATGTGG 59.991 40.741 0.00 0.00 0.00 4.17
276 277 8.858003 ATCACCGACGCTATCTATAAAATATG 57.142 34.615 0.00 0.00 0.00 1.78
278 279 8.047413 TGATCACCGACGCTATCTATAAAATA 57.953 34.615 0.00 0.00 0.00 1.40
293 294 8.873830 CATATATTTCCTAACATGATCACCGAC 58.126 37.037 0.00 0.00 0.00 4.79
315 316 5.762218 GGAACAAGCTAGTGATTGAGCATAT 59.238 40.000 10.27 0.00 41.64 1.78
329 330 5.748670 TGTGGTGTATTAGGAACAAGCTA 57.251 39.130 0.00 0.00 0.00 3.32
335 336 3.681417 GGTCGTTGTGGTGTATTAGGAAC 59.319 47.826 0.00 0.00 0.00 3.62
350 351 2.073816 GGTACCTTGATGTGGTCGTTG 58.926 52.381 4.06 0.00 38.88 4.10
352 353 1.344065 TGGTACCTTGATGTGGTCGT 58.656 50.000 14.36 0.00 38.88 4.34
359 360 4.526262 TGGGTCAATTTTGGTACCTTGATG 59.474 41.667 14.36 6.23 30.97 3.07
360 361 4.746466 TGGGTCAATTTTGGTACCTTGAT 58.254 39.130 14.36 1.04 30.97 2.57
361 362 4.186077 TGGGTCAATTTTGGTACCTTGA 57.814 40.909 14.36 11.62 32.38 3.02
414 415 3.412386 CCGAGTTCCTCCAATTCTTGTT 58.588 45.455 0.00 0.00 0.00 2.83
421 422 1.985895 ACTTTCCCGAGTTCCTCCAAT 59.014 47.619 0.00 0.00 0.00 3.16
422 423 1.430992 ACTTTCCCGAGTTCCTCCAA 58.569 50.000 0.00 0.00 0.00 3.53
427 428 3.072211 CCAACTAACTTTCCCGAGTTCC 58.928 50.000 0.00 0.00 40.24 3.62
434 435 1.254026 GGTGCCCAACTAACTTTCCC 58.746 55.000 0.00 0.00 0.00 3.97
437 438 1.699730 GGTGGTGCCCAACTAACTTT 58.300 50.000 2.29 0.00 38.38 2.66
469 470 4.755123 ACACTAAAACTGTCATTCGGGAAG 59.245 41.667 0.00 0.00 0.00 3.46
470 471 4.710324 ACACTAAAACTGTCATTCGGGAA 58.290 39.130 0.00 0.00 0.00 3.97
472 473 5.293569 GGATACACTAAAACTGTCATTCGGG 59.706 44.000 0.00 0.00 0.00 5.14
532 533 5.183530 ACATTGGAGGAATTCAGATGTCA 57.816 39.130 7.93 0.00 31.28 3.58
565 566 4.108699 TGGAACACAGCAACTCAAAAAG 57.891 40.909 0.00 0.00 0.00 2.27
575 576 1.391157 GGCCAGTTTGGAACACAGCA 61.391 55.000 0.00 0.00 40.96 4.41
576 577 1.363807 GGCCAGTTTGGAACACAGC 59.636 57.895 0.00 0.00 40.96 4.40
588 589 2.795329 CAGACAAACATAAGGGCCAGT 58.205 47.619 6.18 0.00 0.00 4.00
593 594 4.497473 TTTTCGCAGACAAACATAAGGG 57.503 40.909 0.00 0.00 34.32 3.95
594 595 6.148948 TGAATTTTCGCAGACAAACATAAGG 58.851 36.000 0.00 0.00 34.32 2.69
630 631 5.998981 CCTAGACGGAGATAGTACATTGAGT 59.001 44.000 0.00 0.00 33.16 3.41
631 632 5.998981 ACCTAGACGGAGATAGTACATTGAG 59.001 44.000 0.00 0.00 36.31 3.02
632 633 5.763698 CACCTAGACGGAGATAGTACATTGA 59.236 44.000 0.00 0.00 36.31 2.57
633 634 5.763698 TCACCTAGACGGAGATAGTACATTG 59.236 44.000 0.00 0.00 36.31 2.82
635 636 5.563876 TCACCTAGACGGAGATAGTACAT 57.436 43.478 0.00 0.00 36.31 2.29
636 637 5.363562 TTCACCTAGACGGAGATAGTACA 57.636 43.478 0.00 0.00 32.16 2.90
637 638 7.661027 ACTTATTCACCTAGACGGAGATAGTAC 59.339 40.741 0.00 0.00 32.16 2.73
638 639 7.743749 ACTTATTCACCTAGACGGAGATAGTA 58.256 38.462 0.00 0.00 32.16 1.82
639 640 6.603224 ACTTATTCACCTAGACGGAGATAGT 58.397 40.000 0.00 0.00 32.16 2.12
640 641 6.711194 TGACTTATTCACCTAGACGGAGATAG 59.289 42.308 0.00 0.00 32.16 2.08
641 642 6.598503 TGACTTATTCACCTAGACGGAGATA 58.401 40.000 0.00 0.00 32.16 1.98
642 643 5.446860 TGACTTATTCACCTAGACGGAGAT 58.553 41.667 0.00 0.00 32.16 2.75
643 644 4.851843 TGACTTATTCACCTAGACGGAGA 58.148 43.478 0.00 0.00 36.31 3.71
644 645 5.776173 ATGACTTATTCACCTAGACGGAG 57.224 43.478 0.00 0.00 36.92 4.63
645 646 5.220989 CGAATGACTTATTCACCTAGACGGA 60.221 44.000 0.00 0.00 44.42 4.69
646 647 4.976731 CGAATGACTTATTCACCTAGACGG 59.023 45.833 0.00 0.00 44.42 4.79
647 648 4.441415 GCGAATGACTTATTCACCTAGACG 59.559 45.833 0.00 0.00 44.42 4.18
648 649 4.441415 CGCGAATGACTTATTCACCTAGAC 59.559 45.833 0.00 0.00 44.42 2.59
649 650 4.097437 ACGCGAATGACTTATTCACCTAGA 59.903 41.667 15.93 0.00 44.42 2.43
650 651 4.360563 ACGCGAATGACTTATTCACCTAG 58.639 43.478 15.93 0.00 44.42 3.02
651 652 4.380841 ACGCGAATGACTTATTCACCTA 57.619 40.909 15.93 0.00 44.42 3.08
652 653 3.247006 ACGCGAATGACTTATTCACCT 57.753 42.857 15.93 0.00 44.42 4.00
653 654 4.110482 ACTACGCGAATGACTTATTCACC 58.890 43.478 15.93 0.00 44.42 4.02
654 655 5.697848 AACTACGCGAATGACTTATTCAC 57.302 39.130 15.93 0.00 44.42 3.18
655 656 6.715344 AAAACTACGCGAATGACTTATTCA 57.285 33.333 15.93 0.00 44.42 2.57
656 657 7.009907 ACCTAAAACTACGCGAATGACTTATTC 59.990 37.037 15.93 0.00 41.46 1.75
657 658 6.815142 ACCTAAAACTACGCGAATGACTTATT 59.185 34.615 15.93 0.00 0.00 1.40
658 659 6.335777 ACCTAAAACTACGCGAATGACTTAT 58.664 36.000 15.93 0.00 0.00 1.73
659 660 5.713025 ACCTAAAACTACGCGAATGACTTA 58.287 37.500 15.93 2.18 0.00 2.24
660 661 4.563061 ACCTAAAACTACGCGAATGACTT 58.437 39.130 15.93 0.94 0.00 3.01
661 662 4.184079 ACCTAAAACTACGCGAATGACT 57.816 40.909 15.93 0.00 0.00 3.41
662 663 4.386652 TCAACCTAAAACTACGCGAATGAC 59.613 41.667 15.93 0.00 0.00 3.06
663 664 4.386652 GTCAACCTAAAACTACGCGAATGA 59.613 41.667 15.93 0.00 0.00 2.57
664 665 4.634991 GTCAACCTAAAACTACGCGAATG 58.365 43.478 15.93 4.47 0.00 2.67
665 666 3.365820 CGTCAACCTAAAACTACGCGAAT 59.634 43.478 15.93 0.00 0.00 3.34
666 667 2.725723 CGTCAACCTAAAACTACGCGAA 59.274 45.455 15.93 0.00 0.00 4.70
667 668 2.031245 TCGTCAACCTAAAACTACGCGA 60.031 45.455 15.93 0.00 0.00 5.87
668 669 2.318578 TCGTCAACCTAAAACTACGCG 58.681 47.619 3.53 3.53 0.00 6.01
669 670 4.916099 AATCGTCAACCTAAAACTACGC 57.084 40.909 0.00 0.00 0.00 4.42
670 671 8.011067 AGTTAAATCGTCAACCTAAAACTACG 57.989 34.615 0.00 0.00 0.00 3.51
673 674 9.939802 AGATAGTTAAATCGTCAACCTAAAACT 57.060 29.630 0.00 0.00 0.00 2.66
704 705 9.138596 GACTCCTAGAAAAGACTCCTAATACAT 57.861 37.037 0.00 0.00 0.00 2.29
705 706 8.337739 AGACTCCTAGAAAAGACTCCTAATACA 58.662 37.037 0.00 0.00 0.00 2.29
706 707 8.756486 AGACTCCTAGAAAAGACTCCTAATAC 57.244 38.462 0.00 0.00 0.00 1.89
707 708 9.771140 AAAGACTCCTAGAAAAGACTCCTAATA 57.229 33.333 0.00 0.00 0.00 0.98
708 709 8.673456 AAAGACTCCTAGAAAAGACTCCTAAT 57.327 34.615 0.00 0.00 0.00 1.73
709 710 8.493787 AAAAGACTCCTAGAAAAGACTCCTAA 57.506 34.615 0.00 0.00 0.00 2.69
710 711 7.951245 AGAAAAGACTCCTAGAAAAGACTCCTA 59.049 37.037 0.00 0.00 0.00 2.94
711 712 6.785466 AGAAAAGACTCCTAGAAAAGACTCCT 59.215 38.462 0.00 0.00 0.00 3.69
712 713 6.999950 AGAAAAGACTCCTAGAAAAGACTCC 58.000 40.000 0.00 0.00 0.00 3.85
713 714 6.804783 CGAGAAAAGACTCCTAGAAAAGACTC 59.195 42.308 0.00 0.00 33.83 3.36
714 715 6.265876 ACGAGAAAAGACTCCTAGAAAAGACT 59.734 38.462 0.00 0.00 33.83 3.24
715 716 6.448852 ACGAGAAAAGACTCCTAGAAAAGAC 58.551 40.000 0.00 0.00 33.83 3.01
716 717 6.651975 ACGAGAAAAGACTCCTAGAAAAGA 57.348 37.500 0.00 0.00 33.83 2.52
717 718 6.366604 GGAACGAGAAAAGACTCCTAGAAAAG 59.633 42.308 0.00 0.00 33.83 2.27
718 719 6.041751 AGGAACGAGAAAAGACTCCTAGAAAA 59.958 38.462 0.00 0.00 31.46 2.29
719 720 5.539193 AGGAACGAGAAAAGACTCCTAGAAA 59.461 40.000 0.00 0.00 31.46 2.52
720 721 5.078256 AGGAACGAGAAAAGACTCCTAGAA 58.922 41.667 0.00 0.00 31.46 2.10
721 722 4.664392 AGGAACGAGAAAAGACTCCTAGA 58.336 43.478 0.00 0.00 31.46 2.43
722 723 5.415077 TGTAGGAACGAGAAAAGACTCCTAG 59.585 44.000 0.00 0.00 36.47 3.02
723 724 5.319453 TGTAGGAACGAGAAAAGACTCCTA 58.681 41.667 0.00 0.00 35.04 2.94
724 725 4.150359 TGTAGGAACGAGAAAAGACTCCT 58.850 43.478 0.00 0.00 37.14 3.69
725 726 4.022155 ACTGTAGGAACGAGAAAAGACTCC 60.022 45.833 0.00 0.00 33.83 3.85
726 727 5.123805 ACTGTAGGAACGAGAAAAGACTC 57.876 43.478 0.00 0.00 0.00 3.36
727 728 5.302313 AGAACTGTAGGAACGAGAAAAGACT 59.698 40.000 0.00 0.00 0.00 3.24
728 729 5.402867 CAGAACTGTAGGAACGAGAAAAGAC 59.597 44.000 0.00 0.00 0.00 3.01
802 803 5.588246 TGAATGTTATATTCGCTCAGCCAAA 59.412 36.000 0.00 0.00 0.00 3.28
808 809 5.530543 TGCCATTGAATGTTATATTCGCTCA 59.469 36.000 4.27 0.00 0.00 4.26
911 912 9.476202 GTTTGTTTTGCTTGTTTTATAGAGGAT 57.524 29.630 0.00 0.00 0.00 3.24
923 926 3.924144 TGCTCTTGTTTGTTTTGCTTGT 58.076 36.364 0.00 0.00 0.00 3.16
939 942 4.093291 CCGCTTCTGCCCTGCTCT 62.093 66.667 0.00 0.00 35.36 4.09
1314 1329 0.595567 TGTCGTACACTGTGTTCGCC 60.596 55.000 27.81 20.78 40.25 5.54
1460 1475 2.048409 CTGTCTCACGCAGCTGCT 60.048 61.111 34.22 19.58 39.32 4.24
1596 1611 6.540189 AGTGCTTCAACTGGTATCATTATCAC 59.460 38.462 0.00 0.00 0.00 3.06
1650 1672 2.125673 TTCGGTCTTGCCTAGCGC 60.126 61.111 0.00 0.00 37.73 5.92
1655 1677 0.976641 TGATGTCTTCGGTCTTGCCT 59.023 50.000 0.00 0.00 34.25 4.75
2140 2163 7.377766 TCTCACCAGCTCACAAATATTTAAC 57.622 36.000 0.00 0.00 0.00 2.01
2141 2164 6.599244 CCTCTCACCAGCTCACAAATATTTAA 59.401 38.462 0.00 0.00 0.00 1.52
2142 2165 6.115446 CCTCTCACCAGCTCACAAATATTTA 58.885 40.000 0.00 0.00 0.00 1.40
2143 2166 4.946157 CCTCTCACCAGCTCACAAATATTT 59.054 41.667 0.00 0.00 0.00 1.40
2212 2235 5.831702 AGGAGTACACGTTAATGGAGTAG 57.168 43.478 0.00 0.00 0.00 2.57
2229 2252 8.079211 TCTCAGCAACAAATATACTTAGGAGT 57.921 34.615 0.00 0.00 39.97 3.85
2230 2253 8.986847 CATCTCAGCAACAAATATACTTAGGAG 58.013 37.037 0.00 0.00 0.00 3.69
2231 2254 8.704668 TCATCTCAGCAACAAATATACTTAGGA 58.295 33.333 0.00 0.00 0.00 2.94
2232 2255 8.893219 TCATCTCAGCAACAAATATACTTAGG 57.107 34.615 0.00 0.00 0.00 2.69
2234 2257 9.494271 GGATCATCTCAGCAACAAATATACTTA 57.506 33.333 0.00 0.00 0.00 2.24
2235 2258 7.994911 TGGATCATCTCAGCAACAAATATACTT 59.005 33.333 0.00 0.00 0.00 2.24
2259 2282 6.889301 AGAATATGCAAGTATGGTCAATGG 57.111 37.500 0.00 0.00 0.00 3.16
2317 2349 4.811555 TTACAATCCATGAATACGCAGC 57.188 40.909 0.00 0.00 0.00 5.25
2389 2421 2.254546 TGTGAAGCAACCACAGGTAG 57.745 50.000 0.00 0.00 39.36 3.18
2392 2424 2.957491 TTTTGTGAAGCAACCACAGG 57.043 45.000 6.07 0.00 44.22 4.00
2439 2471 3.893200 TCGTCTGGACCTACTCAAGAAAA 59.107 43.478 0.00 0.00 0.00 2.29
2491 2526 0.676466 TGGTGTCCGATCCATTGCAC 60.676 55.000 0.00 0.00 0.00 4.57
2535 2570 3.091545 TGAGGCTTGCATTAAAGGGAAG 58.908 45.455 7.20 7.20 36.85 3.46
2550 2585 0.979709 TATGAGCAGCTGGTGAGGCT 60.980 55.000 25.60 8.70 41.07 4.58
2727 2763 5.883661 ACCATTTCTAATTTCGTCATGCAG 58.116 37.500 0.00 0.00 0.00 4.41
2836 2872 3.068448 GCCTAAACCGGGTCTTTCAAAAA 59.932 43.478 6.32 0.00 0.00 1.94
2837 2873 2.624364 GCCTAAACCGGGTCTTTCAAAA 59.376 45.455 6.32 0.00 0.00 2.44
2838 2874 2.232399 GCCTAAACCGGGTCTTTCAAA 58.768 47.619 6.32 0.00 0.00 2.69
2839 2875 1.546099 GGCCTAAACCGGGTCTTTCAA 60.546 52.381 6.32 0.00 0.00 2.69
2840 2876 0.037160 GGCCTAAACCGGGTCTTTCA 59.963 55.000 6.32 0.00 0.00 2.69
2841 2877 2.864114 GGCCTAAACCGGGTCTTTC 58.136 57.895 6.32 0.00 0.00 2.62
2850 2886 2.164338 TCAATGAAACCGGCCTAAACC 58.836 47.619 0.00 0.00 0.00 3.27
2851 2887 4.450082 AATCAATGAAACCGGCCTAAAC 57.550 40.909 0.00 0.00 0.00 2.01
2852 2888 5.126384 CCTAAATCAATGAAACCGGCCTAAA 59.874 40.000 0.00 0.00 0.00 1.85
2853 2889 4.642885 CCTAAATCAATGAAACCGGCCTAA 59.357 41.667 0.00 0.00 0.00 2.69
2854 2890 4.080243 TCCTAAATCAATGAAACCGGCCTA 60.080 41.667 0.00 0.00 0.00 3.93
2855 2891 3.023832 CCTAAATCAATGAAACCGGCCT 58.976 45.455 0.00 0.00 0.00 5.19
2856 2892 3.020984 TCCTAAATCAATGAAACCGGCC 58.979 45.455 0.00 0.00 0.00 6.13
2857 2893 3.945285 TCTCCTAAATCAATGAAACCGGC 59.055 43.478 0.00 0.00 0.00 6.13
2858 2894 6.509418 TTTCTCCTAAATCAATGAAACCGG 57.491 37.500 0.00 0.00 0.00 5.28
2859 2895 6.030228 GCTTTCTCCTAAATCAATGAAACCG 58.970 40.000 0.00 0.00 0.00 4.44
2860 2896 6.924111 TGCTTTCTCCTAAATCAATGAAACC 58.076 36.000 0.00 0.00 0.00 3.27
2861 2897 9.508567 GTATGCTTTCTCCTAAATCAATGAAAC 57.491 33.333 0.00 0.00 0.00 2.78
2862 2898 8.397906 CGTATGCTTTCTCCTAAATCAATGAAA 58.602 33.333 0.00 0.00 0.00 2.69
2863 2899 7.768582 TCGTATGCTTTCTCCTAAATCAATGAA 59.231 33.333 0.00 0.00 0.00 2.57
2864 2900 7.272244 TCGTATGCTTTCTCCTAAATCAATGA 58.728 34.615 0.00 0.00 0.00 2.57
2865 2901 7.482654 TCGTATGCTTTCTCCTAAATCAATG 57.517 36.000 0.00 0.00 0.00 2.82
2866 2902 8.506168 TTTCGTATGCTTTCTCCTAAATCAAT 57.494 30.769 0.00 0.00 0.00 2.57
2867 2903 7.915293 TTTCGTATGCTTTCTCCTAAATCAA 57.085 32.000 0.00 0.00 0.00 2.57
2868 2904 7.915293 TTTTCGTATGCTTTCTCCTAAATCA 57.085 32.000 0.00 0.00 0.00 2.57
2869 2905 8.234546 TGTTTTTCGTATGCTTTCTCCTAAATC 58.765 33.333 0.00 0.00 0.00 2.17
2870 2906 8.106247 TGTTTTTCGTATGCTTTCTCCTAAAT 57.894 30.769 0.00 0.00 0.00 1.40
2871 2907 7.499321 TGTTTTTCGTATGCTTTCTCCTAAA 57.501 32.000 0.00 0.00 0.00 1.85
2872 2908 7.499321 TTGTTTTTCGTATGCTTTCTCCTAA 57.501 32.000 0.00 0.00 0.00 2.69
2873 2909 6.348213 GCTTGTTTTTCGTATGCTTTCTCCTA 60.348 38.462 0.00 0.00 0.00 2.94
2874 2910 5.562890 GCTTGTTTTTCGTATGCTTTCTCCT 60.563 40.000 0.00 0.00 0.00 3.69
2875 2911 4.617223 GCTTGTTTTTCGTATGCTTTCTCC 59.383 41.667 0.00 0.00 0.00 3.71
2876 2912 4.318332 CGCTTGTTTTTCGTATGCTTTCTC 59.682 41.667 0.00 0.00 0.00 2.87
2877 2913 4.219033 CGCTTGTTTTTCGTATGCTTTCT 58.781 39.130 0.00 0.00 0.00 2.52
2878 2914 3.360758 CCGCTTGTTTTTCGTATGCTTTC 59.639 43.478 0.00 0.00 0.00 2.62
2879 2915 3.305110 CCGCTTGTTTTTCGTATGCTTT 58.695 40.909 0.00 0.00 0.00 3.51
2880 2916 2.351350 CCCGCTTGTTTTTCGTATGCTT 60.351 45.455 0.00 0.00 0.00 3.91
2881 2917 1.199097 CCCGCTTGTTTTTCGTATGCT 59.801 47.619 0.00 0.00 0.00 3.79
2882 2918 1.613270 CCCGCTTGTTTTTCGTATGC 58.387 50.000 0.00 0.00 0.00 3.14
2883 2919 1.807742 TCCCCGCTTGTTTTTCGTATG 59.192 47.619 0.00 0.00 0.00 2.39
2884 2920 2.188062 TCCCCGCTTGTTTTTCGTAT 57.812 45.000 0.00 0.00 0.00 3.06
2885 2921 2.078392 GATCCCCGCTTGTTTTTCGTA 58.922 47.619 0.00 0.00 0.00 3.43
2886 2922 0.879090 GATCCCCGCTTGTTTTTCGT 59.121 50.000 0.00 0.00 0.00 3.85
2887 2923 0.878416 TGATCCCCGCTTGTTTTTCG 59.122 50.000 0.00 0.00 0.00 3.46
2888 2924 2.296190 ACTTGATCCCCGCTTGTTTTTC 59.704 45.455 0.00 0.00 0.00 2.29
2889 2925 2.035832 CACTTGATCCCCGCTTGTTTTT 59.964 45.455 0.00 0.00 0.00 1.94
2890 2926 1.613437 CACTTGATCCCCGCTTGTTTT 59.387 47.619 0.00 0.00 0.00 2.43
2891 2927 1.202879 TCACTTGATCCCCGCTTGTTT 60.203 47.619 0.00 0.00 0.00 2.83
2892 2928 0.400213 TCACTTGATCCCCGCTTGTT 59.600 50.000 0.00 0.00 0.00 2.83
2893 2929 0.620556 ATCACTTGATCCCCGCTTGT 59.379 50.000 0.00 0.00 0.00 3.16
2894 2930 1.303309 GATCACTTGATCCCCGCTTG 58.697 55.000 7.87 0.00 43.85 4.01
2895 2931 3.788672 GATCACTTGATCCCCGCTT 57.211 52.632 7.87 0.00 43.85 4.68
2903 2939 2.424601 CCGTTTGCCATGATCACTTGAT 59.575 45.455 0.00 0.00 37.51 2.57
2904 2940 1.811965 CCGTTTGCCATGATCACTTGA 59.188 47.619 0.00 0.00 0.00 3.02
2905 2941 1.811965 TCCGTTTGCCATGATCACTTG 59.188 47.619 0.00 0.00 0.00 3.16
2906 2942 2.198827 TCCGTTTGCCATGATCACTT 57.801 45.000 0.00 0.00 0.00 3.16
2907 2943 2.198827 TTCCGTTTGCCATGATCACT 57.801 45.000 0.00 0.00 0.00 3.41
2908 2944 3.296322 TTTTCCGTTTGCCATGATCAC 57.704 42.857 0.00 0.00 0.00 3.06
2909 2945 3.860378 GCTTTTTCCGTTTGCCATGATCA 60.860 43.478 0.00 0.00 0.00 2.92
2910 2946 2.667969 GCTTTTTCCGTTTGCCATGATC 59.332 45.455 0.00 0.00 0.00 2.92
2911 2947 2.299867 AGCTTTTTCCGTTTGCCATGAT 59.700 40.909 0.00 0.00 0.00 2.45
2912 2948 1.686052 AGCTTTTTCCGTTTGCCATGA 59.314 42.857 0.00 0.00 0.00 3.07
2913 2949 2.061028 GAGCTTTTTCCGTTTGCCATG 58.939 47.619 0.00 0.00 0.00 3.66
2914 2950 1.686052 TGAGCTTTTTCCGTTTGCCAT 59.314 42.857 0.00 0.00 0.00 4.40
2915 2951 1.107114 TGAGCTTTTTCCGTTTGCCA 58.893 45.000 0.00 0.00 0.00 4.92
2916 2952 1.202359 TGTGAGCTTTTTCCGTTTGCC 60.202 47.619 0.00 0.00 0.00 4.52
2917 2953 2.202295 TGTGAGCTTTTTCCGTTTGC 57.798 45.000 0.00 0.00 0.00 3.68
2918 2954 4.027572 TCTTGTGAGCTTTTTCCGTTTG 57.972 40.909 0.00 0.00 0.00 2.93
2919 2955 4.292977 CTCTTGTGAGCTTTTTCCGTTT 57.707 40.909 0.00 0.00 33.12 3.60
2920 2956 3.971032 CTCTTGTGAGCTTTTTCCGTT 57.029 42.857 0.00 0.00 33.12 4.44
2931 2967 5.947228 TTTAGTTTCCATGCTCTTGTGAG 57.053 39.130 0.00 0.00 42.96 3.51
2932 2968 6.545666 TCTTTTTAGTTTCCATGCTCTTGTGA 59.454 34.615 0.00 0.00 0.00 3.58
2933 2969 6.738114 TCTTTTTAGTTTCCATGCTCTTGTG 58.262 36.000 0.00 0.00 0.00 3.33
2934 2970 6.959639 TCTTTTTAGTTTCCATGCTCTTGT 57.040 33.333 0.00 0.00 0.00 3.16
2935 2971 8.542953 GTTTTCTTTTTAGTTTCCATGCTCTTG 58.457 33.333 0.00 0.00 0.00 3.02
2936 2972 7.435192 CGTTTTCTTTTTAGTTTCCATGCTCTT 59.565 33.333 0.00 0.00 0.00 2.85
2937 2973 6.918022 CGTTTTCTTTTTAGTTTCCATGCTCT 59.082 34.615 0.00 0.00 0.00 4.09
2938 2974 6.143919 CCGTTTTCTTTTTAGTTTCCATGCTC 59.856 38.462 0.00 0.00 0.00 4.26
2939 2975 5.983118 CCGTTTTCTTTTTAGTTTCCATGCT 59.017 36.000 0.00 0.00 0.00 3.79
2940 2976 5.333035 GCCGTTTTCTTTTTAGTTTCCATGC 60.333 40.000 0.00 0.00 0.00 4.06
2941 2977 5.108027 CGCCGTTTTCTTTTTAGTTTCCATG 60.108 40.000 0.00 0.00 0.00 3.66
2942 2978 4.979815 CGCCGTTTTCTTTTTAGTTTCCAT 59.020 37.500 0.00 0.00 0.00 3.41
2943 2979 4.096081 TCGCCGTTTTCTTTTTAGTTTCCA 59.904 37.500 0.00 0.00 0.00 3.53
2944 2980 4.600032 TCGCCGTTTTCTTTTTAGTTTCC 58.400 39.130 0.00 0.00 0.00 3.13
2945 2981 5.910723 TCATCGCCGTTTTCTTTTTAGTTTC 59.089 36.000 0.00 0.00 0.00 2.78
2946 2982 5.823353 TCATCGCCGTTTTCTTTTTAGTTT 58.177 33.333 0.00 0.00 0.00 2.66
2947 2983 5.427036 TCATCGCCGTTTTCTTTTTAGTT 57.573 34.783 0.00 0.00 0.00 2.24
2948 2984 5.390613 CATCATCGCCGTTTTCTTTTTAGT 58.609 37.500 0.00 0.00 0.00 2.24
2949 2985 4.793216 CCATCATCGCCGTTTTCTTTTTAG 59.207 41.667 0.00 0.00 0.00 1.85
2950 2986 4.728534 CCATCATCGCCGTTTTCTTTTTA 58.271 39.130 0.00 0.00 0.00 1.52
2951 2987 3.574614 CCATCATCGCCGTTTTCTTTTT 58.425 40.909 0.00 0.00 0.00 1.94
2952 2988 2.671070 GCCATCATCGCCGTTTTCTTTT 60.671 45.455 0.00 0.00 0.00 2.27
2953 2989 1.135402 GCCATCATCGCCGTTTTCTTT 60.135 47.619 0.00 0.00 0.00 2.52
2954 2990 0.451783 GCCATCATCGCCGTTTTCTT 59.548 50.000 0.00 0.00 0.00 2.52
2955 2991 1.705337 CGCCATCATCGCCGTTTTCT 61.705 55.000 0.00 0.00 0.00 2.52
2956 2992 1.297598 CGCCATCATCGCCGTTTTC 60.298 57.895 0.00 0.00 0.00 2.29
2957 2993 1.977594 GACGCCATCATCGCCGTTTT 61.978 55.000 0.00 0.00 33.63 2.43
2958 2994 2.435938 ACGCCATCATCGCCGTTT 60.436 55.556 0.00 0.00 0.00 3.60
2959 2995 2.890474 GACGCCATCATCGCCGTT 60.890 61.111 0.00 0.00 33.63 4.44
2960 2996 4.891727 GGACGCCATCATCGCCGT 62.892 66.667 0.00 0.00 36.53 5.68
2961 2997 2.763627 TATGGACGCCATCATCGCCG 62.764 60.000 13.58 0.00 40.74 6.46
2962 2998 1.005037 TATGGACGCCATCATCGCC 60.005 57.895 13.58 0.00 40.74 5.54
2963 2999 0.038251 TCTATGGACGCCATCATCGC 60.038 55.000 13.58 0.00 40.74 4.58
2964 3000 1.702886 GTCTATGGACGCCATCATCG 58.297 55.000 13.58 3.82 40.74 3.84
2974 3010 4.655527 CGATGGGCGTCTATGGAC 57.344 61.111 0.00 0.00 38.97 4.02
2984 3020 1.221414 GCAGTAAGATCACGATGGGC 58.779 55.000 0.00 0.00 0.00 5.36
2985 3021 1.414181 AGGCAGTAAGATCACGATGGG 59.586 52.381 0.00 0.00 0.00 4.00
2986 3022 2.868583 CAAGGCAGTAAGATCACGATGG 59.131 50.000 0.00 0.00 0.00 3.51
2987 3023 2.286294 GCAAGGCAGTAAGATCACGATG 59.714 50.000 0.00 0.00 0.00 3.84
2988 3024 2.169352 AGCAAGGCAGTAAGATCACGAT 59.831 45.455 0.00 0.00 0.00 3.73
2989 3025 1.550524 AGCAAGGCAGTAAGATCACGA 59.449 47.619 0.00 0.00 0.00 4.35
2990 3026 1.662629 CAGCAAGGCAGTAAGATCACG 59.337 52.381 0.00 0.00 0.00 4.35
2991 3027 1.399791 GCAGCAAGGCAGTAAGATCAC 59.600 52.381 0.00 0.00 0.00 3.06
2992 3028 1.280133 AGCAGCAAGGCAGTAAGATCA 59.720 47.619 0.00 0.00 35.83 2.92
2993 3029 1.669779 CAGCAGCAAGGCAGTAAGATC 59.330 52.381 0.00 0.00 35.83 2.75
2994 3030 1.004044 ACAGCAGCAAGGCAGTAAGAT 59.996 47.619 0.00 0.00 31.25 2.40
2995 3031 0.397941 ACAGCAGCAAGGCAGTAAGA 59.602 50.000 0.00 0.00 31.25 2.10
2996 3032 0.520404 CACAGCAGCAAGGCAGTAAG 59.480 55.000 0.00 0.00 31.86 2.34
2997 3033 0.179020 ACACAGCAGCAAGGCAGTAA 60.179 50.000 0.00 0.00 31.86 2.24
2998 3034 0.603707 GACACAGCAGCAAGGCAGTA 60.604 55.000 0.00 0.00 31.86 2.74
2999 3035 1.895707 GACACAGCAGCAAGGCAGT 60.896 57.895 0.00 0.00 33.44 4.40
3000 3036 2.623915 GGACACAGCAGCAAGGCAG 61.624 63.158 0.00 0.00 35.83 4.85
3001 3037 2.595463 GGACACAGCAGCAAGGCA 60.595 61.111 0.00 0.00 35.83 4.75
3002 3038 3.368571 GGGACACAGCAGCAAGGC 61.369 66.667 0.00 0.00 0.00 4.35
3003 3039 2.674380 GGGGACACAGCAGCAAGG 60.674 66.667 0.00 0.00 0.00 3.61
3004 3040 3.052082 CGGGGACACAGCAGCAAG 61.052 66.667 0.00 0.00 0.00 4.01
3005 3041 3.113514 TTCGGGGACACAGCAGCAA 62.114 57.895 0.00 0.00 0.00 3.91
3006 3042 3.555324 TTCGGGGACACAGCAGCA 61.555 61.111 0.00 0.00 0.00 4.41
3007 3043 3.050275 GTTCGGGGACACAGCAGC 61.050 66.667 0.00 0.00 0.00 5.25
3008 3044 2.738521 CGTTCGGGGACACAGCAG 60.739 66.667 0.00 0.00 0.00 4.24
3009 3045 4.308458 CCGTTCGGGGACACAGCA 62.308 66.667 3.04 0.00 0.00 4.41
3019 3055 0.320073 TGTTTAGAGCACCCGTTCGG 60.320 55.000 4.08 4.08 37.81 4.30
3020 3056 1.393539 CATGTTTAGAGCACCCGTTCG 59.606 52.381 0.00 0.00 0.00 3.95
3021 3057 1.130561 GCATGTTTAGAGCACCCGTTC 59.869 52.381 0.00 0.00 0.00 3.95
3022 3058 1.165270 GCATGTTTAGAGCACCCGTT 58.835 50.000 0.00 0.00 0.00 4.44
3023 3059 1.019278 CGCATGTTTAGAGCACCCGT 61.019 55.000 0.00 0.00 0.00 5.28
3024 3060 0.739462 TCGCATGTTTAGAGCACCCG 60.739 55.000 0.00 0.00 0.00 5.28
3025 3061 0.727398 GTCGCATGTTTAGAGCACCC 59.273 55.000 0.00 0.00 0.00 4.61
3026 3062 1.661112 GAGTCGCATGTTTAGAGCACC 59.339 52.381 0.00 0.00 0.00 5.01
3027 3063 1.661112 GGAGTCGCATGTTTAGAGCAC 59.339 52.381 0.00 0.00 0.00 4.40
3028 3064 1.275010 TGGAGTCGCATGTTTAGAGCA 59.725 47.619 0.00 0.00 0.00 4.26
3029 3065 1.929836 CTGGAGTCGCATGTTTAGAGC 59.070 52.381 0.00 0.00 0.00 4.09
3030 3066 1.929836 GCTGGAGTCGCATGTTTAGAG 59.070 52.381 0.00 0.00 0.00 2.43
3031 3067 1.275010 TGCTGGAGTCGCATGTTTAGA 59.725 47.619 0.00 0.00 31.40 2.10
3032 3068 1.662629 CTGCTGGAGTCGCATGTTTAG 59.337 52.381 0.00 0.00 36.70 1.85
3033 3069 1.275010 TCTGCTGGAGTCGCATGTTTA 59.725 47.619 0.00 0.00 36.70 2.01
3034 3070 0.035317 TCTGCTGGAGTCGCATGTTT 59.965 50.000 0.00 0.00 36.70 2.83
3035 3071 0.251354 ATCTGCTGGAGTCGCATGTT 59.749 50.000 0.00 0.00 36.70 2.71
3036 3072 0.179089 GATCTGCTGGAGTCGCATGT 60.179 55.000 0.00 0.00 36.70 3.21
3037 3073 0.104487 AGATCTGCTGGAGTCGCATG 59.896 55.000 0.00 0.00 36.70 4.06
3038 3074 0.388659 GAGATCTGCTGGAGTCGCAT 59.611 55.000 0.00 0.00 36.70 4.73
3039 3075 1.670949 GGAGATCTGCTGGAGTCGCA 61.671 60.000 7.03 0.00 35.80 5.10
3040 3076 1.067250 GGAGATCTGCTGGAGTCGC 59.933 63.158 7.03 0.00 0.00 5.19
3041 3077 0.820226 TTGGAGATCTGCTGGAGTCG 59.180 55.000 15.82 0.00 0.00 4.18
3042 3078 2.106566 TCTTGGAGATCTGCTGGAGTC 58.893 52.381 15.82 0.00 0.00 3.36
3043 3079 1.830477 GTCTTGGAGATCTGCTGGAGT 59.170 52.381 15.82 0.00 0.00 3.85
3044 3080 1.202394 CGTCTTGGAGATCTGCTGGAG 60.202 57.143 15.82 10.43 0.00 3.86
3045 3081 0.820226 CGTCTTGGAGATCTGCTGGA 59.180 55.000 15.82 10.18 0.00 3.86
3046 3082 0.809241 GCGTCTTGGAGATCTGCTGG 60.809 60.000 15.82 8.05 0.00 4.85
3047 3083 0.108472 TGCGTCTTGGAGATCTGCTG 60.108 55.000 15.82 8.42 0.00 4.41
3048 3084 2.280835 TGCGTCTTGGAGATCTGCT 58.719 52.632 15.82 0.00 0.00 4.24
3049 3085 4.919653 TGCGTCTTGGAGATCTGC 57.080 55.556 7.39 7.39 0.00 4.26



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.