Multiple sequence alignment - TraesCS2B01G312400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G312400 chr2B 100.000 4162 0 0 1 4162 447818235 447822396 0.000000e+00 7686.0
1 TraesCS2B01G312400 chr2B 88.088 638 70 4 2436 3067 270743285 270742648 0.000000e+00 752.0
2 TraesCS2B01G312400 chr2B 87.420 628 68 8 2449 3067 406111502 406110877 0.000000e+00 712.0
3 TraesCS2B01G312400 chr2D 90.796 1521 92 25 820 2321 376349664 376351155 0.000000e+00 1989.0
4 TraesCS2B01G312400 chr2D 91.961 1443 69 17 2326 3736 376351243 376352670 0.000000e+00 1978.0
5 TraesCS2B01G312400 chr2D 87.286 409 20 13 3774 4162 376352853 376353249 4.940000e-119 438.0
6 TraesCS2B01G312400 chr2A 92.136 1348 82 10 789 2134 509546117 509547442 0.000000e+00 1881.0
7 TraesCS2B01G312400 chr2A 93.599 828 33 7 2731 3556 509548167 509548976 0.000000e+00 1218.0
8 TraesCS2B01G312400 chr2A 86.061 660 66 11 2 639 509078233 509078888 0.000000e+00 686.0
9 TraesCS2B01G312400 chr2A 88.395 517 37 13 813 1319 509937399 509937902 5.950000e-168 601.0
10 TraesCS2B01G312400 chr2A 90.850 306 15 8 3868 4162 509577291 509577594 8.380000e-107 398.0
11 TraesCS2B01G312400 chr2A 87.671 146 16 2 2176 2321 509547443 509547586 7.160000e-38 169.0
12 TraesCS2B01G312400 chr2A 94.545 110 4 2 3652 3761 509548982 509549089 7.160000e-38 169.0
13 TraesCS2B01G312400 chr7A 88.959 634 63 5 2440 3067 213101074 213101706 0.000000e+00 776.0
14 TraesCS2B01G312400 chr6D 91.023 557 46 4 2451 3003 420229836 420229280 0.000000e+00 749.0
15 TraesCS2B01G312400 chr5A 90.351 570 49 4 2438 3003 611979763 611979196 0.000000e+00 743.0
16 TraesCS2B01G312400 chr5A 78.595 911 129 44 1125 2015 570936155 570935291 3.660000e-150 542.0
17 TraesCS2B01G312400 chr5A 78.345 411 63 20 2769 3162 570934668 570934267 4.160000e-60 243.0
18 TraesCS2B01G312400 chr5A 96.875 32 1 0 30 61 402546017 402546048 2.000000e-03 54.7
19 TraesCS2B01G312400 chr4A 90.860 558 46 4 2451 3003 581494432 581493875 0.000000e+00 743.0
20 TraesCS2B01G312400 chr7B 87.719 627 71 4 2446 3067 433800374 433800999 0.000000e+00 726.0
21 TraesCS2B01G312400 chr1B 87.879 627 65 10 2449 3065 299550804 299550179 0.000000e+00 726.0
22 TraesCS2B01G312400 chr5D 78.095 945 138 48 1089 2013 451978238 451977343 6.120000e-148 534.0
23 TraesCS2B01G312400 chr5D 84.167 120 16 1 3046 3162 451976431 451976312 3.400000e-21 113.0
24 TraesCS2B01G312400 chr5D 84.167 120 16 1 3046 3162 452213886 452213767 3.400000e-21 113.0
25 TraesCS2B01G312400 chr5B 78.180 912 136 50 1125 2019 552292226 552291361 1.330000e-144 523.0
26 TraesCS2B01G312400 chr5B 78.194 908 127 49 1125 2013 551807294 551806439 7.980000e-142 514.0
27 TraesCS2B01G312400 chr5B 83.333 120 17 1 3046 3162 551805516 551805397 1.580000e-19 108.0
28 TraesCS2B01G312400 chr6A 78.510 577 79 31 1110 1665 204398453 204399005 1.850000e-88 337.0
29 TraesCS2B01G312400 chr1A 77.108 664 96 39 1110 1750 191561154 191561784 2.400000e-87 333.0
30 TraesCS2B01G312400 chr4B 76.357 571 92 32 1109 1665 509510900 509511441 2.470000e-67 267.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G312400 chr2B 447818235 447822396 4161 False 7686.000000 7686 100.000000 1 4162 1 chr2B.!!$F1 4161
1 TraesCS2B01G312400 chr2B 270742648 270743285 637 True 752.000000 752 88.088000 2436 3067 1 chr2B.!!$R1 631
2 TraesCS2B01G312400 chr2B 406110877 406111502 625 True 712.000000 712 87.420000 2449 3067 1 chr2B.!!$R2 618
3 TraesCS2B01G312400 chr2D 376349664 376353249 3585 False 1468.333333 1989 90.014333 820 4162 3 chr2D.!!$F1 3342
4 TraesCS2B01G312400 chr2A 509546117 509549089 2972 False 859.250000 1881 91.987750 789 3761 4 chr2A.!!$F4 2972
5 TraesCS2B01G312400 chr2A 509078233 509078888 655 False 686.000000 686 86.061000 2 639 1 chr2A.!!$F1 637
6 TraesCS2B01G312400 chr2A 509937399 509937902 503 False 601.000000 601 88.395000 813 1319 1 chr2A.!!$F3 506
7 TraesCS2B01G312400 chr7A 213101074 213101706 632 False 776.000000 776 88.959000 2440 3067 1 chr7A.!!$F1 627
8 TraesCS2B01G312400 chr6D 420229280 420229836 556 True 749.000000 749 91.023000 2451 3003 1 chr6D.!!$R1 552
9 TraesCS2B01G312400 chr5A 611979196 611979763 567 True 743.000000 743 90.351000 2438 3003 1 chr5A.!!$R1 565
10 TraesCS2B01G312400 chr5A 570934267 570936155 1888 True 392.500000 542 78.470000 1125 3162 2 chr5A.!!$R2 2037
11 TraesCS2B01G312400 chr4A 581493875 581494432 557 True 743.000000 743 90.860000 2451 3003 1 chr4A.!!$R1 552
12 TraesCS2B01G312400 chr7B 433800374 433800999 625 False 726.000000 726 87.719000 2446 3067 1 chr7B.!!$F1 621
13 TraesCS2B01G312400 chr1B 299550179 299550804 625 True 726.000000 726 87.879000 2449 3065 1 chr1B.!!$R1 616
14 TraesCS2B01G312400 chr5D 451976312 451978238 1926 True 323.500000 534 81.131000 1089 3162 2 chr5D.!!$R2 2073
15 TraesCS2B01G312400 chr5B 552291361 552292226 865 True 523.000000 523 78.180000 1125 2019 1 chr5B.!!$R1 894
16 TraesCS2B01G312400 chr5B 551805397 551807294 1897 True 311.000000 514 80.763500 1125 3162 2 chr5B.!!$R2 2037
17 TraesCS2B01G312400 chr6A 204398453 204399005 552 False 337.000000 337 78.510000 1110 1665 1 chr6A.!!$F1 555
18 TraesCS2B01G312400 chr1A 191561154 191561784 630 False 333.000000 333 77.108000 1110 1750 1 chr1A.!!$F1 640
19 TraesCS2B01G312400 chr4B 509510900 509511441 541 False 267.000000 267 76.357000 1109 1665 1 chr4B.!!$F1 556

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
45 46 0.040067 CCGAGCTGGTTTTGTGAAGC 60.040 55.000 0.00 0.00 35.86 3.86 F
873 874 0.178992 AGCAAACCCTAGCTGCAACA 60.179 50.000 1.02 0.00 40.13 3.33 F
888 889 0.322098 CAACACCCAAGTCCCGCATA 60.322 55.000 0.00 0.00 0.00 3.14 F
1021 1031 0.393448 GGTAAGATCCGGAAGCCTCC 59.607 60.000 9.01 5.36 38.52 4.30 F
2297 2586 1.485066 CCCAGGTATAGTGTGACCCAC 59.515 57.143 0.00 0.00 44.89 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1731 1953 0.251165 GGGCCAAAAGCAGACCAGTA 60.251 55.000 4.39 0.00 46.50 2.74 R
2443 2866 0.541296 AAGCTCCCTGCAGCAACAAT 60.541 50.000 8.66 0.00 45.94 2.71 R
2780 3324 1.745653 GCCAGTGACTGAAATAAGGGC 59.254 52.381 15.33 1.98 32.44 5.19 R
2804 3348 2.168496 TGGTACTTCTCAGGTTCCTCG 58.832 52.381 0.00 0.00 0.00 4.63 R
4132 4933 0.526662 CCAGTTCGTCGCTAGGTCTT 59.473 55.000 0.00 0.00 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 0.040067 CCGAGCTGGTTTTGTGAAGC 60.040 55.000 0.00 0.00 35.86 3.86
70 71 3.515602 AGAAGCTTCCAAATGGTCAGT 57.484 42.857 22.81 0.00 36.34 3.41
80 81 3.640967 CCAAATGGTCAGTTTTGGGAAGA 59.359 43.478 6.54 0.00 45.27 2.87
81 82 4.100808 CCAAATGGTCAGTTTTGGGAAGAA 59.899 41.667 6.54 0.00 45.27 2.52
86 87 5.560724 TGGTCAGTTTTGGGAAGAATCTAG 58.439 41.667 0.00 0.00 0.00 2.43
93 94 6.657117 AGTTTTGGGAAGAATCTAGAAGCTTC 59.343 38.462 19.11 19.11 36.81 3.86
96 97 3.723260 GGAAGAATCTAGAAGCTTCCGG 58.277 50.000 27.50 15.25 44.69 5.14
98 99 4.364860 GAAGAATCTAGAAGCTTCCGGAC 58.635 47.826 22.81 10.00 32.63 4.79
126 127 3.573967 TGGGAAGCTTCTGACCAATTTTC 59.426 43.478 25.05 4.55 0.00 2.29
128 129 4.281941 GGGAAGCTTCTGACCAATTTTCTT 59.718 41.667 25.05 0.00 0.00 2.52
129 130 5.221521 GGGAAGCTTCTGACCAATTTTCTTT 60.222 40.000 25.05 0.00 0.00 2.52
130 131 6.283694 GGAAGCTTCTGACCAATTTTCTTTT 58.716 36.000 25.05 0.00 0.00 2.27
131 132 6.763135 GGAAGCTTCTGACCAATTTTCTTTTT 59.237 34.615 25.05 0.00 0.00 1.94
153 154 7.583860 TTTTTCCTTTTTGGTTTTCTGTACG 57.416 32.000 0.00 0.00 37.07 3.67
154 155 4.295857 TCCTTTTTGGTTTTCTGTACGC 57.704 40.909 0.00 0.00 37.07 4.42
155 156 3.067040 TCCTTTTTGGTTTTCTGTACGCC 59.933 43.478 0.00 0.00 37.07 5.68
156 157 3.067601 CCTTTTTGGTTTTCTGTACGCCT 59.932 43.478 0.00 0.00 0.00 5.52
157 158 4.440940 CCTTTTTGGTTTTCTGTACGCCTT 60.441 41.667 0.00 0.00 0.00 4.35
158 159 4.722361 TTTTGGTTTTCTGTACGCCTTT 57.278 36.364 0.00 0.00 0.00 3.11
159 160 4.722361 TTTGGTTTTCTGTACGCCTTTT 57.278 36.364 0.00 0.00 0.00 2.27
160 161 5.831702 TTTGGTTTTCTGTACGCCTTTTA 57.168 34.783 0.00 0.00 0.00 1.52
161 162 6.394025 TTTGGTTTTCTGTACGCCTTTTAT 57.606 33.333 0.00 0.00 0.00 1.40
162 163 6.394025 TTGGTTTTCTGTACGCCTTTTATT 57.606 33.333 0.00 0.00 0.00 1.40
163 164 6.394025 TGGTTTTCTGTACGCCTTTTATTT 57.606 33.333 0.00 0.00 0.00 1.40
164 165 6.210078 TGGTTTTCTGTACGCCTTTTATTTG 58.790 36.000 0.00 0.00 0.00 2.32
165 166 5.631929 GGTTTTCTGTACGCCTTTTATTTGG 59.368 40.000 0.00 0.00 0.00 3.28
166 167 6.210796 GTTTTCTGTACGCCTTTTATTTGGT 58.789 36.000 0.00 0.00 0.00 3.67
167 168 6.394025 TTTCTGTACGCCTTTTATTTGGTT 57.606 33.333 0.00 0.00 0.00 3.67
168 169 6.394025 TTCTGTACGCCTTTTATTTGGTTT 57.606 33.333 0.00 0.00 0.00 3.27
169 170 6.394025 TCTGTACGCCTTTTATTTGGTTTT 57.606 33.333 0.00 0.00 0.00 2.43
170 171 6.440436 TCTGTACGCCTTTTATTTGGTTTTC 58.560 36.000 0.00 0.00 0.00 2.29
171 172 5.530712 TGTACGCCTTTTATTTGGTTTTCC 58.469 37.500 0.00 0.00 41.14 3.13
172 173 4.948341 ACGCCTTTTATTTGGTTTTCCT 57.052 36.364 0.00 0.00 41.38 3.36
173 174 5.284861 ACGCCTTTTATTTGGTTTTCCTT 57.715 34.783 0.00 0.00 41.38 3.36
174 175 5.676552 ACGCCTTTTATTTGGTTTTCCTTT 58.323 33.333 0.00 0.00 41.38 3.11
175 176 6.116806 ACGCCTTTTATTTGGTTTTCCTTTT 58.883 32.000 0.00 0.00 41.38 2.27
176 177 7.273712 ACGCCTTTTATTTGGTTTTCCTTTTA 58.726 30.769 0.00 0.00 41.38 1.52
177 178 7.934665 ACGCCTTTTATTTGGTTTTCCTTTTAT 59.065 29.630 0.00 0.00 41.38 1.40
178 179 9.425577 CGCCTTTTATTTGGTTTTCCTTTTATA 57.574 29.630 0.00 0.00 41.38 0.98
185 186 8.840833 ATTTGGTTTTCCTTTTATAAATGCGT 57.159 26.923 0.00 0.00 41.38 5.24
186 187 7.644986 TTGGTTTTCCTTTTATAAATGCGTG 57.355 32.000 0.00 0.00 41.38 5.34
187 188 6.982852 TGGTTTTCCTTTTATAAATGCGTGA 58.017 32.000 0.00 0.00 41.38 4.35
188 189 6.864165 TGGTTTTCCTTTTATAAATGCGTGAC 59.136 34.615 0.00 0.00 41.38 3.67
211 212 2.559698 TTTTCGTGATCTTCTGCCCA 57.440 45.000 0.00 0.00 0.00 5.36
212 213 2.559698 TTTCGTGATCTTCTGCCCAA 57.440 45.000 0.00 0.00 0.00 4.12
213 214 2.559698 TTCGTGATCTTCTGCCCAAA 57.440 45.000 0.00 0.00 0.00 3.28
214 215 2.787473 TCGTGATCTTCTGCCCAAAT 57.213 45.000 0.00 0.00 0.00 2.32
215 216 3.071874 TCGTGATCTTCTGCCCAAATT 57.928 42.857 0.00 0.00 0.00 1.82
216 217 3.009723 TCGTGATCTTCTGCCCAAATTC 58.990 45.455 0.00 0.00 0.00 2.17
217 218 2.749076 CGTGATCTTCTGCCCAAATTCA 59.251 45.455 0.00 0.00 0.00 2.57
218 219 3.379372 CGTGATCTTCTGCCCAAATTCAT 59.621 43.478 0.00 0.00 0.00 2.57
219 220 4.679662 GTGATCTTCTGCCCAAATTCATG 58.320 43.478 0.00 0.00 0.00 3.07
220 221 4.400251 GTGATCTTCTGCCCAAATTCATGA 59.600 41.667 0.00 0.00 0.00 3.07
221 222 4.400251 TGATCTTCTGCCCAAATTCATGAC 59.600 41.667 0.00 0.00 0.00 3.06
222 223 3.091545 TCTTCTGCCCAAATTCATGACC 58.908 45.455 0.00 0.00 0.00 4.02
223 224 2.905415 TCTGCCCAAATTCATGACCT 57.095 45.000 0.00 0.00 0.00 3.85
224 225 3.173953 TCTGCCCAAATTCATGACCTT 57.826 42.857 0.00 0.00 0.00 3.50
225 226 3.509442 TCTGCCCAAATTCATGACCTTT 58.491 40.909 0.00 0.00 0.00 3.11
226 227 3.903090 TCTGCCCAAATTCATGACCTTTT 59.097 39.130 0.00 0.00 0.00 2.27
227 228 4.021192 TCTGCCCAAATTCATGACCTTTTC 60.021 41.667 0.00 0.00 0.00 2.29
228 229 3.903090 TGCCCAAATTCATGACCTTTTCT 59.097 39.130 0.00 0.00 0.00 2.52
229 230 4.021192 TGCCCAAATTCATGACCTTTTCTC 60.021 41.667 0.00 0.00 0.00 2.87
230 231 4.021192 GCCCAAATTCATGACCTTTTCTCA 60.021 41.667 0.00 0.00 0.00 3.27
231 232 5.511202 GCCCAAATTCATGACCTTTTCTCAA 60.511 40.000 0.00 0.00 0.00 3.02
232 233 6.523840 CCCAAATTCATGACCTTTTCTCAAA 58.476 36.000 0.00 0.00 0.00 2.69
233 234 6.991531 CCCAAATTCATGACCTTTTCTCAAAA 59.008 34.615 0.00 0.00 0.00 2.44
234 235 7.498570 CCCAAATTCATGACCTTTTCTCAAAAA 59.501 33.333 0.00 0.00 33.42 1.94
381 382 9.447157 TGAAATTTTTCAAGGTTGTGATCTTTT 57.553 25.926 3.31 0.00 43.62 2.27
424 425 3.341857 TTGAACCCGTGAAATGTTTCG 57.658 42.857 1.49 0.00 40.01 3.46
425 426 2.562635 TGAACCCGTGAAATGTTTCGA 58.437 42.857 1.49 0.00 40.01 3.71
426 427 2.546368 TGAACCCGTGAAATGTTTCGAG 59.454 45.455 1.49 0.00 40.01 4.04
427 428 2.249844 ACCCGTGAAATGTTTCGAGT 57.750 45.000 1.49 0.00 40.01 4.18
428 429 2.567985 ACCCGTGAAATGTTTCGAGTT 58.432 42.857 1.49 0.00 40.01 3.01
429 430 2.946990 ACCCGTGAAATGTTTCGAGTTT 59.053 40.909 1.49 0.00 40.01 2.66
430 431 3.242936 ACCCGTGAAATGTTTCGAGTTTG 60.243 43.478 1.49 0.00 40.01 2.93
431 432 3.242936 CCCGTGAAATGTTTCGAGTTTGT 60.243 43.478 1.49 0.00 40.01 2.83
432 433 3.723764 CCGTGAAATGTTTCGAGTTTGTG 59.276 43.478 1.49 0.00 40.01 3.33
433 434 4.495019 CCGTGAAATGTTTCGAGTTTGTGA 60.495 41.667 1.49 0.00 40.01 3.58
434 435 5.025190 CGTGAAATGTTTCGAGTTTGTGAA 58.975 37.500 1.49 0.00 40.01 3.18
435 436 5.053286 CGTGAAATGTTTCGAGTTTGTGAAC 60.053 40.000 1.49 0.00 40.01 3.18
436 437 6.027749 GTGAAATGTTTCGAGTTTGTGAACT 58.972 36.000 1.49 0.00 40.53 3.01
437 438 6.526674 GTGAAATGTTTCGAGTTTGTGAACTT 59.473 34.615 1.49 0.00 40.27 2.66
438 439 6.745450 TGAAATGTTTCGAGTTTGTGAACTTC 59.255 34.615 1.49 0.00 40.27 3.01
439 440 6.436843 AATGTTTCGAGTTTGTGAACTTCT 57.563 33.333 0.00 0.00 45.88 2.85
440 441 5.464965 TGTTTCGAGTTTGTGAACTTCTC 57.535 39.130 0.00 0.00 45.88 2.87
441 442 5.175859 TGTTTCGAGTTTGTGAACTTCTCT 58.824 37.500 0.00 0.00 45.88 3.10
442 443 5.291128 TGTTTCGAGTTTGTGAACTTCTCTC 59.709 40.000 0.00 0.00 45.88 3.20
443 444 4.649088 TCGAGTTTGTGAACTTCTCTCA 57.351 40.909 0.00 0.00 45.88 3.27
444 445 5.006153 TCGAGTTTGTGAACTTCTCTCAA 57.994 39.130 0.00 0.00 45.88 3.02
445 446 5.416083 TCGAGTTTGTGAACTTCTCTCAAA 58.584 37.500 0.00 0.00 45.88 2.69
446 447 6.049149 TCGAGTTTGTGAACTTCTCTCAAAT 58.951 36.000 5.56 0.00 45.88 2.32
447 448 6.201044 TCGAGTTTGTGAACTTCTCTCAAATC 59.799 38.462 5.56 4.60 45.88 2.17
448 449 6.564873 CGAGTTTGTGAACTTCTCTCAAATCC 60.565 42.308 5.56 1.83 45.88 3.01
449 450 6.122277 AGTTTGTGAACTTCTCTCAAATCCA 58.878 36.000 5.56 0.00 44.84 3.41
450 451 6.774656 AGTTTGTGAACTTCTCTCAAATCCAT 59.225 34.615 5.56 0.00 44.84 3.41
451 452 6.564709 TTGTGAACTTCTCTCAAATCCATG 57.435 37.500 0.00 0.00 35.21 3.66
452 453 5.868454 TGTGAACTTCTCTCAAATCCATGA 58.132 37.500 0.00 0.00 0.00 3.07
453 454 6.479006 TGTGAACTTCTCTCAAATCCATGAT 58.521 36.000 0.00 0.00 0.00 2.45
454 455 6.944290 TGTGAACTTCTCTCAAATCCATGATT 59.056 34.615 0.00 0.00 33.25 2.57
455 456 7.449395 TGTGAACTTCTCTCAAATCCATGATTT 59.551 33.333 0.00 0.00 42.14 2.17
456 457 8.302438 GTGAACTTCTCTCAAATCCATGATTTT 58.698 33.333 0.00 0.00 39.82 1.82
457 458 8.863086 TGAACTTCTCTCAAATCCATGATTTTT 58.137 29.630 0.00 0.00 39.82 1.94
479 480 6.537453 TTTTGAGTCCCATGAACTTTTTCA 57.463 33.333 0.00 0.00 45.93 2.69
480 481 6.537453 TTTGAGTCCCATGAACTTTTTCAA 57.463 33.333 0.00 0.00 45.01 2.69
481 482 5.772825 TGAGTCCCATGAACTTTTTCAAG 57.227 39.130 0.00 0.00 45.01 3.02
482 483 5.200483 TGAGTCCCATGAACTTTTTCAAGT 58.800 37.500 0.00 0.00 45.01 3.16
519 520 8.549338 TTTTTAAACCGTGTTTTTCTCCATTT 57.451 26.923 7.22 0.00 0.00 2.32
520 521 8.549338 TTTTAAACCGTGTTTTTCTCCATTTT 57.451 26.923 7.22 0.00 0.00 1.82
521 522 7.758613 TTAAACCGTGTTTTTCTCCATTTTC 57.241 32.000 7.22 0.00 0.00 2.29
522 523 4.993029 ACCGTGTTTTTCTCCATTTTCA 57.007 36.364 0.00 0.00 0.00 2.69
523 524 5.529581 ACCGTGTTTTTCTCCATTTTCAT 57.470 34.783 0.00 0.00 0.00 2.57
524 525 5.288804 ACCGTGTTTTTCTCCATTTTCATG 58.711 37.500 0.00 0.00 0.00 3.07
525 526 5.068460 ACCGTGTTTTTCTCCATTTTCATGA 59.932 36.000 0.00 0.00 31.07 3.07
526 527 5.630680 CCGTGTTTTTCTCCATTTTCATGAG 59.369 40.000 0.00 0.00 31.07 2.90
527 528 5.117592 CGTGTTTTTCTCCATTTTCATGAGC 59.882 40.000 0.00 0.00 31.07 4.26
528 529 5.984926 GTGTTTTTCTCCATTTTCATGAGCA 59.015 36.000 0.00 0.00 31.07 4.26
529 530 6.647895 GTGTTTTTCTCCATTTTCATGAGCAT 59.352 34.615 0.00 0.00 31.07 3.79
530 531 7.172019 GTGTTTTTCTCCATTTTCATGAGCATT 59.828 33.333 0.00 0.00 31.07 3.56
531 532 7.716123 TGTTTTTCTCCATTTTCATGAGCATTT 59.284 29.630 0.00 0.00 31.07 2.32
532 533 8.562052 GTTTTTCTCCATTTTCATGAGCATTTT 58.438 29.630 0.00 0.00 31.07 1.82
533 534 7.894376 TTTCTCCATTTTCATGAGCATTTTC 57.106 32.000 0.00 0.00 31.07 2.29
534 535 6.845758 TCTCCATTTTCATGAGCATTTTCT 57.154 33.333 0.00 0.00 31.07 2.52
535 536 7.943079 TCTCCATTTTCATGAGCATTTTCTA 57.057 32.000 0.00 0.00 31.07 2.10
536 537 8.352137 TCTCCATTTTCATGAGCATTTTCTAA 57.648 30.769 0.00 0.00 31.07 2.10
537 538 8.805175 TCTCCATTTTCATGAGCATTTTCTAAA 58.195 29.630 0.00 0.00 31.07 1.85
538 539 9.595823 CTCCATTTTCATGAGCATTTTCTAAAT 57.404 29.630 0.00 0.00 31.07 1.40
539 540 9.373603 TCCATTTTCATGAGCATTTTCTAAATG 57.626 29.630 13.22 13.22 31.07 2.32
540 541 9.158233 CCATTTTCATGAGCATTTTCTAAATGT 57.842 29.630 16.57 1.97 31.79 2.71
543 544 8.975410 TTTCATGAGCATTTTCTAAATGTCTG 57.025 30.769 12.26 6.55 0.00 3.51
544 545 7.692460 TCATGAGCATTTTCTAAATGTCTGT 57.308 32.000 12.26 0.00 0.00 3.41
545 546 8.114331 TCATGAGCATTTTCTAAATGTCTGTT 57.886 30.769 12.26 0.91 0.00 3.16
546 547 8.579006 TCATGAGCATTTTCTAAATGTCTGTTT 58.421 29.630 12.26 0.00 0.00 2.83
547 548 9.199982 CATGAGCATTTTCTAAATGTCTGTTTT 57.800 29.630 12.26 0.00 0.00 2.43
548 549 9.768662 ATGAGCATTTTCTAAATGTCTGTTTTT 57.231 25.926 12.26 0.00 0.00 1.94
584 585 4.147219 CTTGAAAAGTCAACGATGGACC 57.853 45.455 0.00 0.00 38.88 4.46
585 586 2.139917 TGAAAAGTCAACGATGGACCG 58.860 47.619 0.00 0.00 35.89 4.79
586 587 1.463444 GAAAAGTCAACGATGGACCGG 59.537 52.381 0.00 0.00 35.89 5.28
587 588 0.953960 AAAGTCAACGATGGACCGGC 60.954 55.000 0.00 0.00 35.89 6.13
588 589 2.798148 AAGTCAACGATGGACCGGCC 62.798 60.000 0.00 4.32 35.89 6.13
596 597 3.253061 TGGACCGGCCAACCATGA 61.253 61.111 14.27 0.00 45.87 3.07
597 598 2.750237 GGACCGGCCAACCATGAC 60.750 66.667 0.00 0.00 36.34 3.06
598 599 2.750237 GACCGGCCAACCATGACC 60.750 66.667 0.00 0.00 34.57 4.02
599 600 3.561120 GACCGGCCAACCATGACCA 62.561 63.158 0.00 0.00 34.57 4.02
600 601 2.751436 CCGGCCAACCATGACCAG 60.751 66.667 2.24 0.00 34.57 4.00
601 602 3.443045 CGGCCAACCATGACCAGC 61.443 66.667 2.24 0.00 34.57 4.85
602 603 3.443045 GGCCAACCATGACCAGCG 61.443 66.667 0.00 0.00 35.26 5.18
603 604 2.359850 GCCAACCATGACCAGCGA 60.360 61.111 0.00 0.00 0.00 4.93
604 605 1.971167 GCCAACCATGACCAGCGAA 60.971 57.895 0.00 0.00 0.00 4.70
605 606 1.875963 CCAACCATGACCAGCGAAC 59.124 57.895 0.00 0.00 0.00 3.95
606 607 1.586154 CCAACCATGACCAGCGAACC 61.586 60.000 0.00 0.00 0.00 3.62
607 608 0.888736 CAACCATGACCAGCGAACCA 60.889 55.000 0.00 0.00 0.00 3.67
608 609 0.606401 AACCATGACCAGCGAACCAG 60.606 55.000 0.00 0.00 0.00 4.00
609 610 1.746615 CCATGACCAGCGAACCAGG 60.747 63.158 0.00 0.00 0.00 4.45
610 611 1.296392 CATGACCAGCGAACCAGGA 59.704 57.895 0.00 0.00 0.00 3.86
611 612 0.321564 CATGACCAGCGAACCAGGAA 60.322 55.000 0.00 0.00 0.00 3.36
612 613 0.400213 ATGACCAGCGAACCAGGAAA 59.600 50.000 0.00 0.00 0.00 3.13
613 614 0.181587 TGACCAGCGAACCAGGAAAA 59.818 50.000 0.00 0.00 0.00 2.29
614 615 0.591659 GACCAGCGAACCAGGAAAAC 59.408 55.000 0.00 0.00 0.00 2.43
615 616 0.822121 ACCAGCGAACCAGGAAAACC 60.822 55.000 0.00 0.00 0.00 3.27
616 617 1.574428 CAGCGAACCAGGAAAACCG 59.426 57.895 0.00 0.00 0.00 4.44
617 618 1.599797 AGCGAACCAGGAAAACCGG 60.600 57.895 0.00 0.00 0.00 5.28
618 619 1.895231 GCGAACCAGGAAAACCGGT 60.895 57.895 0.00 0.00 33.32 5.28
619 620 1.946267 CGAACCAGGAAAACCGGTG 59.054 57.895 8.52 0.00 31.94 4.94
620 621 0.816421 CGAACCAGGAAAACCGGTGT 60.816 55.000 8.52 0.00 31.94 4.16
621 622 0.666374 GAACCAGGAAAACCGGTGTG 59.334 55.000 8.52 0.57 31.94 3.82
622 623 1.388837 AACCAGGAAAACCGGTGTGC 61.389 55.000 8.52 0.00 31.94 4.57
623 624 2.561037 CCAGGAAAACCGGTGTGCC 61.561 63.158 15.04 15.04 0.00 5.01
624 625 2.203437 AGGAAAACCGGTGTGCCC 60.203 61.111 19.44 13.08 0.00 5.36
625 626 3.299977 GGAAAACCGGTGTGCCCC 61.300 66.667 11.40 2.75 0.00 5.80
633 634 4.404098 GGTGTGCCCCGACCGAAT 62.404 66.667 0.00 0.00 0.00 3.34
634 635 3.124921 GTGTGCCCCGACCGAATG 61.125 66.667 0.00 0.00 0.00 2.67
636 637 4.778143 GTGCCCCGACCGAATGCT 62.778 66.667 0.00 0.00 0.00 3.79
637 638 4.467084 TGCCCCGACCGAATGCTC 62.467 66.667 0.00 0.00 0.00 4.26
639 640 4.143333 CCCCGACCGAATGCTCGT 62.143 66.667 0.00 0.00 43.87 4.18
640 641 2.885644 CCCGACCGAATGCTCGTG 60.886 66.667 0.00 0.00 43.87 4.35
641 642 2.885644 CCGACCGAATGCTCGTGG 60.886 66.667 0.00 0.00 43.87 4.94
642 643 2.126071 CGACCGAATGCTCGTGGT 60.126 61.111 0.00 0.00 43.87 4.16
643 644 1.736645 CGACCGAATGCTCGTGGTT 60.737 57.895 0.00 0.00 43.87 3.67
644 645 1.289109 CGACCGAATGCTCGTGGTTT 61.289 55.000 0.00 0.00 43.87 3.27
645 646 0.872388 GACCGAATGCTCGTGGTTTT 59.128 50.000 0.00 0.00 43.87 2.43
646 647 0.591170 ACCGAATGCTCGTGGTTTTG 59.409 50.000 0.00 0.00 43.87 2.44
647 648 0.729140 CCGAATGCTCGTGGTTTTGC 60.729 55.000 0.00 0.00 43.87 3.68
648 649 0.729140 CGAATGCTCGTGGTTTTGCC 60.729 55.000 0.00 0.00 40.33 4.52
649 650 0.313672 GAATGCTCGTGGTTTTGCCA 59.686 50.000 0.00 0.00 46.95 4.92
661 662 4.892433 TGGTTTTGCCATGTCTTAAATGG 58.108 39.130 0.90 0.90 46.29 3.16
662 663 4.590647 TGGTTTTGCCATGTCTTAAATGGA 59.409 37.500 8.57 0.00 46.44 3.41
663 664 5.070981 TGGTTTTGCCATGTCTTAAATGGAA 59.929 36.000 8.57 0.00 46.44 3.53
664 665 6.172630 GGTTTTGCCATGTCTTAAATGGAAT 58.827 36.000 8.57 0.00 46.44 3.01
665 666 7.038729 TGGTTTTGCCATGTCTTAAATGGAATA 60.039 33.333 8.57 0.00 46.44 1.75
666 667 7.277760 GGTTTTGCCATGTCTTAAATGGAATAC 59.722 37.037 8.57 5.78 46.44 1.89
667 668 5.749596 TGCCATGTCTTAAATGGAATACG 57.250 39.130 8.57 0.00 46.44 3.06
668 669 5.189928 TGCCATGTCTTAAATGGAATACGT 58.810 37.500 8.57 0.00 46.44 3.57
669 670 5.065859 TGCCATGTCTTAAATGGAATACGTG 59.934 40.000 8.57 0.00 46.44 4.49
670 671 5.065988 GCCATGTCTTAAATGGAATACGTGT 59.934 40.000 8.57 0.00 46.44 4.49
671 672 6.486248 CCATGTCTTAAATGGAATACGTGTG 58.514 40.000 0.00 0.00 46.44 3.82
672 673 6.093495 CCATGTCTTAAATGGAATACGTGTGT 59.907 38.462 0.00 0.00 46.44 3.72
673 674 7.361713 CCATGTCTTAAATGGAATACGTGTGTT 60.362 37.037 0.00 0.00 46.44 3.32
674 675 7.499321 TGTCTTAAATGGAATACGTGTGTTT 57.501 32.000 0.00 0.00 0.00 2.83
675 676 7.577979 TGTCTTAAATGGAATACGTGTGTTTC 58.422 34.615 0.00 0.00 0.00 2.78
676 677 7.226918 TGTCTTAAATGGAATACGTGTGTTTCA 59.773 33.333 0.00 0.00 0.00 2.69
677 678 8.234546 GTCTTAAATGGAATACGTGTGTTTCAT 58.765 33.333 0.00 0.00 0.00 2.57
678 679 8.447833 TCTTAAATGGAATACGTGTGTTTCATC 58.552 33.333 0.00 0.00 0.00 2.92
679 680 6.817765 AAATGGAATACGTGTGTTTCATCT 57.182 33.333 0.00 0.00 0.00 2.90
680 681 6.422776 AATGGAATACGTGTGTTTCATCTC 57.577 37.500 0.00 0.00 0.00 2.75
681 682 4.888917 TGGAATACGTGTGTTTCATCTCA 58.111 39.130 0.00 0.00 0.00 3.27
682 683 5.301555 TGGAATACGTGTGTTTCATCTCAA 58.698 37.500 0.00 0.00 0.00 3.02
683 684 5.760743 TGGAATACGTGTGTTTCATCTCAAA 59.239 36.000 0.00 0.00 0.00 2.69
684 685 6.261158 TGGAATACGTGTGTTTCATCTCAAAA 59.739 34.615 0.00 0.00 0.00 2.44
685 686 7.136119 GGAATACGTGTGTTTCATCTCAAAAA 58.864 34.615 0.00 0.00 0.00 1.94
686 687 7.323656 GGAATACGTGTGTTTCATCTCAAAAAG 59.676 37.037 0.00 0.00 0.00 2.27
687 688 5.811399 ACGTGTGTTTCATCTCAAAAAGA 57.189 34.783 0.00 0.00 38.72 2.52
688 689 6.189677 ACGTGTGTTTCATCTCAAAAAGAA 57.810 33.333 0.00 0.00 37.61 2.52
689 690 6.616947 ACGTGTGTTTCATCTCAAAAAGAAA 58.383 32.000 0.00 0.00 37.61 2.52
690 691 7.087639 ACGTGTGTTTCATCTCAAAAAGAAAA 58.912 30.769 0.00 0.00 37.61 2.29
691 692 7.596995 ACGTGTGTTTCATCTCAAAAAGAAAAA 59.403 29.630 0.00 0.00 37.61 1.94
726 727 9.772973 AAATAAATAAAAAGAAGCTTTCCCGTT 57.227 25.926 0.00 0.00 0.00 4.44
727 728 8.981724 ATAAATAAAAAGAAGCTTTCCCGTTC 57.018 30.769 0.00 0.00 0.00 3.95
728 729 6.650427 AATAAAAAGAAGCTTTCCCGTTCT 57.350 33.333 0.00 0.00 31.71 3.01
729 730 7.754851 AATAAAAAGAAGCTTTCCCGTTCTA 57.245 32.000 0.00 0.00 30.22 2.10
730 731 5.434352 AAAAAGAAGCTTTCCCGTTCTAC 57.566 39.130 0.00 0.00 30.22 2.59
731 732 4.353383 AAAGAAGCTTTCCCGTTCTACT 57.647 40.909 0.00 0.00 30.22 2.57
732 733 5.479124 AAAGAAGCTTTCCCGTTCTACTA 57.521 39.130 0.00 0.00 30.22 1.82
733 734 4.453177 AGAAGCTTTCCCGTTCTACTAC 57.547 45.455 0.00 0.00 0.00 2.73
734 735 2.935481 AGCTTTCCCGTTCTACTACG 57.065 50.000 0.00 0.00 41.06 3.51
735 736 2.440409 AGCTTTCCCGTTCTACTACGA 58.560 47.619 0.00 0.00 43.99 3.43
736 737 2.821969 AGCTTTCCCGTTCTACTACGAA 59.178 45.455 0.00 0.00 43.99 3.85
737 738 2.919859 GCTTTCCCGTTCTACTACGAAC 59.080 50.000 0.00 0.00 43.99 3.95
738 739 3.612479 GCTTTCCCGTTCTACTACGAACA 60.612 47.826 0.00 0.00 43.99 3.18
739 740 4.549458 CTTTCCCGTTCTACTACGAACAA 58.451 43.478 0.00 0.00 43.99 2.83
740 741 4.582701 TTCCCGTTCTACTACGAACAAA 57.417 40.909 0.00 0.00 43.99 2.83
741 742 4.164822 TCCCGTTCTACTACGAACAAAG 57.835 45.455 0.00 0.00 43.99 2.77
742 743 2.665052 CCCGTTCTACTACGAACAAAGC 59.335 50.000 0.00 0.00 43.99 3.51
743 744 3.311106 CCGTTCTACTACGAACAAAGCA 58.689 45.455 0.00 0.00 43.99 3.91
744 745 3.737266 CCGTTCTACTACGAACAAAGCAA 59.263 43.478 0.00 0.00 43.99 3.91
745 746 4.209703 CCGTTCTACTACGAACAAAGCAAA 59.790 41.667 0.00 0.00 43.99 3.68
746 747 5.276963 CCGTTCTACTACGAACAAAGCAAAA 60.277 40.000 0.00 0.00 43.99 2.44
747 748 5.614382 CGTTCTACTACGAACAAAGCAAAAC 59.386 40.000 0.00 0.00 43.99 2.43
748 749 6.480285 GTTCTACTACGAACAAAGCAAAACA 58.520 36.000 0.00 0.00 42.15 2.83
749 750 6.665474 TCTACTACGAACAAAGCAAAACAA 57.335 33.333 0.00 0.00 0.00 2.83
750 751 7.074507 TCTACTACGAACAAAGCAAAACAAA 57.925 32.000 0.00 0.00 0.00 2.83
751 752 7.184106 TCTACTACGAACAAAGCAAAACAAAG 58.816 34.615 0.00 0.00 0.00 2.77
752 753 5.945155 ACTACGAACAAAGCAAAACAAAGA 58.055 33.333 0.00 0.00 0.00 2.52
753 754 6.560711 ACTACGAACAAAGCAAAACAAAGAT 58.439 32.000 0.00 0.00 0.00 2.40
754 755 5.701029 ACGAACAAAGCAAAACAAAGATG 57.299 34.783 0.00 0.00 0.00 2.90
755 756 5.167845 ACGAACAAAGCAAAACAAAGATGT 58.832 33.333 0.00 0.00 43.14 3.06
756 757 5.062058 ACGAACAAAGCAAAACAAAGATGTG 59.938 36.000 0.00 0.00 40.46 3.21
757 758 4.863152 ACAAAGCAAAACAAAGATGTGC 57.137 36.364 0.00 0.00 40.46 4.57
758 759 4.252073 ACAAAGCAAAACAAAGATGTGCA 58.748 34.783 0.00 0.00 40.46 4.57
759 760 4.330620 ACAAAGCAAAACAAAGATGTGCAG 59.669 37.500 0.00 0.00 40.46 4.41
760 761 3.806625 AGCAAAACAAAGATGTGCAGT 57.193 38.095 0.00 0.00 40.46 4.40
761 762 4.916983 AGCAAAACAAAGATGTGCAGTA 57.083 36.364 0.00 0.00 40.46 2.74
762 763 4.863491 AGCAAAACAAAGATGTGCAGTAG 58.137 39.130 0.00 0.00 40.46 2.57
763 764 3.983344 GCAAAACAAAGATGTGCAGTAGG 59.017 43.478 0.00 0.00 40.46 3.18
764 765 3.923017 AAACAAAGATGTGCAGTAGGC 57.077 42.857 0.00 0.00 40.46 3.93
765 766 2.867109 ACAAAGATGTGCAGTAGGCT 57.133 45.000 0.00 0.00 45.15 4.58
766 767 2.430465 ACAAAGATGTGCAGTAGGCTG 58.570 47.619 0.00 0.00 45.15 4.85
774 775 2.816958 CAGTAGGCTGCGGCAGTG 60.817 66.667 28.88 16.19 40.87 3.66
775 776 3.314331 AGTAGGCTGCGGCAGTGT 61.314 61.111 28.88 19.12 40.87 3.55
776 777 3.121030 GTAGGCTGCGGCAGTGTG 61.121 66.667 28.88 7.22 40.87 3.82
777 778 3.625897 TAGGCTGCGGCAGTGTGT 61.626 61.111 28.88 14.54 40.87 3.72
778 779 2.279810 TAGGCTGCGGCAGTGTGTA 61.280 57.895 28.88 13.63 40.87 2.90
779 780 1.613317 TAGGCTGCGGCAGTGTGTAT 61.613 55.000 28.88 12.44 40.87 2.29
780 781 1.153449 GGCTGCGGCAGTGTGTATA 60.153 57.895 28.88 0.00 40.87 1.47
781 782 0.532862 GGCTGCGGCAGTGTGTATAT 60.533 55.000 28.88 0.00 40.87 0.86
782 783 1.270094 GGCTGCGGCAGTGTGTATATA 60.270 52.381 28.88 0.00 40.87 0.86
783 784 2.612972 GGCTGCGGCAGTGTGTATATAT 60.613 50.000 28.88 0.00 40.87 0.86
784 785 2.413112 GCTGCGGCAGTGTGTATATATG 59.587 50.000 28.88 2.34 38.54 1.78
785 786 2.995939 CTGCGGCAGTGTGTATATATGG 59.004 50.000 21.60 0.00 0.00 2.74
786 787 2.289382 TGCGGCAGTGTGTATATATGGG 60.289 50.000 0.00 0.00 0.00 4.00
787 788 2.289444 GCGGCAGTGTGTATATATGGGT 60.289 50.000 0.00 0.00 0.00 4.51
809 810 3.377485 TCTGTCCACGCATCTAGTACTTC 59.623 47.826 0.00 0.00 0.00 3.01
810 811 2.426024 TGTCCACGCATCTAGTACTTCC 59.574 50.000 0.00 0.00 0.00 3.46
811 812 2.688958 GTCCACGCATCTAGTACTTCCT 59.311 50.000 0.00 0.00 0.00 3.36
823 824 2.193993 GTACTTCCTAAGGCCCAAGGA 58.806 52.381 17.80 17.80 40.18 3.36
873 874 0.178992 AGCAAACCCTAGCTGCAACA 60.179 50.000 1.02 0.00 40.13 3.33
887 888 1.603455 CAACACCCAAGTCCCGCAT 60.603 57.895 0.00 0.00 0.00 4.73
888 889 0.322098 CAACACCCAAGTCCCGCATA 60.322 55.000 0.00 0.00 0.00 3.14
934 935 1.081092 CCTCCCCTCTCCCACTTCA 59.919 63.158 0.00 0.00 0.00 3.02
941 942 1.638529 CTCTCCCACTTCACCACTCT 58.361 55.000 0.00 0.00 0.00 3.24
955 956 0.539051 CACTCTTCTCCCTCGCCAAT 59.461 55.000 0.00 0.00 0.00 3.16
957 958 2.035632 ACTCTTCTCCCTCGCCAATAG 58.964 52.381 0.00 0.00 0.00 1.73
1021 1031 0.393448 GGTAAGATCCGGAAGCCTCC 59.607 60.000 9.01 5.36 38.52 4.30
1082 1092 6.078202 TCTGATTGATTCGAGTCCATAGTC 57.922 41.667 5.38 0.00 0.00 2.59
1083 1093 5.830457 TCTGATTGATTCGAGTCCATAGTCT 59.170 40.000 5.38 0.00 0.00 3.24
1087 1097 8.300286 TGATTGATTCGAGTCCATAGTCTTATC 58.700 37.037 5.38 0.00 0.00 1.75
1156 1166 3.787001 AGGGCCTACTCCAAGCGC 61.787 66.667 2.82 0.00 39.55 5.92
1209 1223 1.610554 TTGAATCCCGTCCCTCGACC 61.611 60.000 0.00 0.00 42.86 4.79
1340 1357 7.051623 ACCAAGACAAGAACAAGTACAATACA 58.948 34.615 0.00 0.00 0.00 2.29
1431 1606 4.948847 TCGTCTATTCATCTCCATTGTGG 58.051 43.478 0.00 0.00 39.43 4.17
1587 1762 3.571828 CCTATTCTCATGAGCTTCCTCGA 59.428 47.826 18.36 0.00 41.13 4.04
1644 1824 7.288810 TGCAGGTAGATTTTTCAACTCAATT 57.711 32.000 0.00 0.00 0.00 2.32
1645 1825 8.402798 TGCAGGTAGATTTTTCAACTCAATTA 57.597 30.769 0.00 0.00 0.00 1.40
1648 1828 9.329913 CAGGTAGATTTTTCAACTCAATTAACG 57.670 33.333 0.00 0.00 0.00 3.18
1650 1830 7.753580 GGTAGATTTTTCAACTCAATTAACGGG 59.246 37.037 0.00 0.00 0.00 5.28
1651 1831 6.156519 AGATTTTTCAACTCAATTAACGGGC 58.843 36.000 0.00 0.00 0.00 6.13
1652 1832 4.920640 TTTTCAACTCAATTAACGGGCA 57.079 36.364 0.00 0.00 0.00 5.36
1653 1833 4.920640 TTTCAACTCAATTAACGGGCAA 57.079 36.364 0.00 0.00 0.00 4.52
1654 1834 4.920640 TTCAACTCAATTAACGGGCAAA 57.079 36.364 0.00 0.00 0.00 3.68
1655 1835 4.231718 TCAACTCAATTAACGGGCAAAC 57.768 40.909 0.00 0.00 0.00 2.93
1656 1836 3.886505 TCAACTCAATTAACGGGCAAACT 59.113 39.130 0.00 0.00 0.00 2.66
1657 1837 3.915437 ACTCAATTAACGGGCAAACTG 57.085 42.857 0.00 0.00 0.00 3.16
1658 1838 2.030274 ACTCAATTAACGGGCAAACTGC 60.030 45.455 0.00 0.00 44.08 4.40
1694 1874 3.049708 TGCATGCATCACTATCTAGCC 57.950 47.619 18.46 0.00 0.00 3.93
1709 1931 5.957771 ATCTAGCCCACTTCAACTGATTA 57.042 39.130 0.00 0.00 0.00 1.75
1717 1939 5.183140 CCCACTTCAACTGATTAAATCCGTT 59.817 40.000 0.00 0.00 37.22 4.44
1731 1953 9.257651 GATTAAATCCGTTATGTAGCTTACTGT 57.742 33.333 0.00 0.00 0.00 3.55
1812 2034 5.827797 TGAGGGCAATGTTGAGGTATAATTC 59.172 40.000 0.00 0.00 0.00 2.17
1822 2044 7.526608 TGTTGAGGTATAATTCGCTTTGAAAG 58.473 34.615 0.00 0.00 40.71 2.62
1828 2050 8.456471 AGGTATAATTCGCTTTGAAAGGTTTAC 58.544 33.333 7.09 0.00 40.71 2.01
1856 2078 3.325293 TGAACTTCCTCTGATGCTGTC 57.675 47.619 0.00 0.00 0.00 3.51
2006 2228 2.551912 CCGTGTGTTTGGTGCCCTC 61.552 63.158 0.00 0.00 0.00 4.30
2020 2242 1.490490 TGCCCTCAAGGTATGTGATCC 59.510 52.381 0.00 0.00 38.26 3.36
2024 2246 4.202441 CCCTCAAGGTATGTGATCCTTTG 58.798 47.826 0.00 0.00 41.44 2.77
2031 2253 5.819991 AGGTATGTGATCCTTTGTGATGTT 58.180 37.500 0.00 0.00 0.00 2.71
2109 2361 5.043248 CACAGGTTTTTGACTTGAATGTCC 58.957 41.667 0.00 0.00 37.53 4.02
2118 2370 3.010027 TGACTTGAATGTCCCAGGCATAA 59.990 43.478 0.00 0.00 36.21 1.90
2199 2488 8.919145 TGTAGTTCATTTTATTTGGTCAGGTTT 58.081 29.630 0.00 0.00 0.00 3.27
2245 2534 9.204570 ACTATATGCTATTTAACTTCGCGAAAT 57.795 29.630 23.54 10.69 0.00 2.17
2256 2545 8.820628 TTAACTTCGCGAAATGATAATTCTTG 57.179 30.769 23.54 8.58 0.00 3.02
2259 2548 6.092122 ACTTCGCGAAATGATAATTCTTGTGA 59.908 34.615 23.54 0.00 0.00 3.58
2266 2555 7.041780 CGAAATGATAATTCTTGTGACCTAGGG 60.042 40.741 14.81 0.00 0.00 3.53
2271 2560 8.044908 TGATAATTCTTGTGACCTAGGGTTAAC 58.955 37.037 14.81 6.11 35.25 2.01
2297 2586 1.485066 CCCAGGTATAGTGTGACCCAC 59.515 57.143 0.00 0.00 44.89 4.61
2310 2599 6.360370 GTGTGACCCACTATATGTCCATAT 57.640 41.667 5.23 5.23 41.11 1.78
2346 2719 8.993424 AGTAGTTTGTCCTCAGGATATTAACAT 58.007 33.333 0.00 0.00 32.73 2.71
2347 2720 9.046296 GTAGTTTGTCCTCAGGATATTAACATG 57.954 37.037 0.00 0.00 32.73 3.21
2349 2771 7.554118 AGTTTGTCCTCAGGATATTAACATGTG 59.446 37.037 0.00 0.00 32.73 3.21
2386 2809 8.387354 CCACTTGTTAATGACAAAAACCTTTTC 58.613 33.333 0.00 0.00 46.99 2.29
2398 2821 6.144886 ACAAAAACCTTTTCGAACACTTCAAC 59.855 34.615 0.00 0.00 0.00 3.18
2401 2824 3.181514 ACCTTTTCGAACACTTCAACACG 60.182 43.478 0.00 0.00 0.00 4.49
2443 2866 3.493129 GCGTAACAGTTGTGTGATTCTGA 59.507 43.478 0.00 0.00 36.84 3.27
2447 2870 6.292865 CGTAACAGTTGTGTGATTCTGATTGT 60.293 38.462 0.00 0.00 36.84 2.71
2652 3089 6.774656 CCATTTCTTCATTCCCTAGTGCTATT 59.225 38.462 0.00 0.00 0.00 1.73
2697 3139 8.708378 TCTTTCTGAAGATATCTTGCCTGATTA 58.292 33.333 22.61 8.64 36.99 1.75
2734 3261 5.212532 TCCTAAAGCCGTGTACTTTGTTA 57.787 39.130 0.00 0.00 37.86 2.41
2736 3263 5.870978 TCCTAAAGCCGTGTACTTTGTTATC 59.129 40.000 0.00 0.00 37.86 1.75
2780 3324 5.613358 ATCTCGTTTTAACTTCTGCCTTG 57.387 39.130 0.00 0.00 0.00 3.61
2877 3421 5.075493 GGATTGAGGCTGATAACATGGAAT 58.925 41.667 0.00 0.00 0.00 3.01
3027 3634 4.059511 CTGCACTTTGATTGGATTGCAAA 58.940 39.130 1.71 0.00 39.36 3.68
3091 3698 1.487976 CTATGAGCAGAGGAAGGCCAA 59.512 52.381 5.01 0.00 36.29 4.52
3095 3702 0.998145 AGCAGAGGAAGGCCAATCTT 59.002 50.000 5.01 0.00 36.29 2.40
3098 3705 2.356125 GCAGAGGAAGGCCAATCTTGTA 60.356 50.000 5.01 0.00 36.29 2.41
3155 3765 2.887152 TGATGATGATGAGGACGACGAT 59.113 45.455 0.00 0.00 0.00 3.73
3181 3791 0.391966 GTGTAATCGACCCTAGGCCC 59.608 60.000 2.05 0.00 0.00 5.80
3221 3831 2.030893 TGCTTCCAAATGAACTTGCTCG 60.031 45.455 0.00 0.00 0.00 5.03
3222 3832 2.669391 GCTTCCAAATGAACTTGCTCGG 60.669 50.000 0.00 0.00 0.00 4.63
3223 3833 0.881118 TCCAAATGAACTTGCTCGGC 59.119 50.000 0.00 0.00 0.00 5.54
3224 3834 0.597568 CCAAATGAACTTGCTCGGCA 59.402 50.000 0.00 0.00 36.47 5.69
3225 3835 1.203052 CCAAATGAACTTGCTCGGCAT 59.797 47.619 0.00 0.00 38.76 4.40
3226 3836 2.353011 CCAAATGAACTTGCTCGGCATT 60.353 45.455 0.00 0.00 38.76 3.56
3227 3837 3.119531 CCAAATGAACTTGCTCGGCATTA 60.120 43.478 0.00 0.00 38.76 1.90
3228 3838 4.484236 CAAATGAACTTGCTCGGCATTAA 58.516 39.130 0.00 0.00 38.76 1.40
3230 3840 3.552604 TGAACTTGCTCGGCATTAAAC 57.447 42.857 0.00 0.00 38.76 2.01
3273 3885 3.582998 ATATGCACATTGTACCTGCCT 57.417 42.857 0.00 0.00 0.00 4.75
3301 3913 3.788227 TTGAGTACCATGCTGGAGTTT 57.212 42.857 8.91 0.00 40.96 2.66
3332 3944 5.680619 TCTTACATTATACAAGGTGCTGGG 58.319 41.667 0.00 0.00 30.00 4.45
3345 3957 1.336755 GTGCTGGGATTTTGACGTTGT 59.663 47.619 0.00 0.00 0.00 3.32
3529 4141 6.765989 TCACTAGTTGACTATTGCACAGTTTT 59.234 34.615 0.00 0.00 31.54 2.43
3559 4171 3.207265 TGGGATCATTGGGTGTAATCG 57.793 47.619 0.00 0.00 0.00 3.34
3562 4174 2.549754 GGATCATTGGGTGTAATCGCAG 59.450 50.000 0.00 0.00 0.00 5.18
3566 4178 3.936453 TCATTGGGTGTAATCGCAGTTAC 59.064 43.478 2.20 2.20 35.60 2.50
3571 4183 2.618053 GTGTAATCGCAGTTACAGCCT 58.382 47.619 10.25 0.00 43.16 4.58
3572 4184 3.000727 GTGTAATCGCAGTTACAGCCTT 58.999 45.455 10.25 0.00 43.16 4.35
3573 4185 4.178540 GTGTAATCGCAGTTACAGCCTTA 58.821 43.478 10.25 0.00 43.16 2.69
3574 4186 4.032558 GTGTAATCGCAGTTACAGCCTTAC 59.967 45.833 10.25 10.63 43.16 2.34
3612 4250 1.146263 CCCCTGCGGTGATAGAACC 59.854 63.158 0.00 0.00 36.82 3.62
3793 4575 9.752961 AAGTAACAAAGTTTAGTGTGTTTTTGT 57.247 25.926 0.00 0.00 39.59 2.83
3797 4579 8.113173 ACAAAGTTTAGTGTGTTTTTGTCCTA 57.887 30.769 0.00 0.00 34.68 2.94
3798 4580 8.745590 ACAAAGTTTAGTGTGTTTTTGTCCTAT 58.254 29.630 0.00 0.00 34.68 2.57
3823 4605 2.872388 CGTCCGCCTGCATCCCTAT 61.872 63.158 0.00 0.00 0.00 2.57
3833 4615 2.621998 CTGCATCCCTATTGAGCAAAGG 59.378 50.000 0.00 0.00 34.45 3.11
3884 4666 9.338622 ACAAAGTAATACTTCAGCAAGTTAAGT 57.661 29.630 6.09 0.00 40.16 2.24
3885 4667 9.813080 CAAAGTAATACTTCAGCAAGTTAAGTC 57.187 33.333 6.09 0.00 40.16 3.01
4018 4800 7.455008 TCCAGGTCTATTTTGAGTTCTCTACTT 59.545 37.037 1.53 0.00 37.17 2.24
4019 4801 8.097662 CCAGGTCTATTTTGAGTTCTCTACTTT 58.902 37.037 1.53 0.00 37.17 2.66
4020 4802 9.145865 CAGGTCTATTTTGAGTTCTCTACTTTC 57.854 37.037 1.53 0.00 37.17 2.62
4022 4804 9.361315 GGTCTATTTTGAGTTCTCTACTTTCTC 57.639 37.037 1.53 0.00 37.17 2.87
4026 4808 5.791336 TTGAGTTCTCTACTTTCTCTGCA 57.209 39.130 1.53 0.00 37.17 4.41
4030 4812 4.039730 AGTTCTCTACTTTCTCTGCAGCAA 59.960 41.667 9.47 0.77 31.29 3.91
4031 4813 4.607293 TCTCTACTTTCTCTGCAGCAAA 57.393 40.909 9.47 9.51 0.00 3.68
4053 4848 4.913335 AGTGCGAATTAGAGTATTCCGA 57.087 40.909 0.00 0.00 32.12 4.55
4055 4850 5.462405 AGTGCGAATTAGAGTATTCCGATC 58.538 41.667 0.00 0.00 32.12 3.69
4058 4853 4.082136 GCGAATTAGAGTATTCCGATCCCT 60.082 45.833 0.00 0.00 32.12 4.20
4072 4867 4.284490 TCCGATCCCTATTTCCATGAGAAG 59.716 45.833 0.00 0.00 35.40 2.85
4132 4933 1.819288 CGACAGCTCCCAGTTCTCTTA 59.181 52.381 0.00 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 1.511305 CCAGCTCGGTTCGCTTCTA 59.489 57.895 0.00 0.00 35.07 2.10
45 46 6.015940 ACTGACCATTTGGAAGCTTCTAAAAG 60.016 38.462 32.98 28.83 40.30 2.27
61 62 5.397360 AGATTCTTCCCAAAACTGACCATT 58.603 37.500 0.00 0.00 0.00 3.16
63 64 4.453480 AGATTCTTCCCAAAACTGACCA 57.547 40.909 0.00 0.00 0.00 4.02
66 67 5.940470 GCTTCTAGATTCTTCCCAAAACTGA 59.060 40.000 0.00 0.00 0.00 3.41
70 71 5.946377 GGAAGCTTCTAGATTCTTCCCAAAA 59.054 40.000 27.23 0.00 45.38 2.44
80 81 2.376109 TCGTCCGGAAGCTTCTAGATT 58.624 47.619 25.05 0.00 0.00 2.40
81 82 2.054232 TCGTCCGGAAGCTTCTAGAT 57.946 50.000 25.05 0.00 0.00 1.98
86 87 1.130561 CCAAAATCGTCCGGAAGCTTC 59.869 52.381 18.54 18.54 0.00 3.86
93 94 0.676782 AGCTTCCCAAAATCGTCCGG 60.677 55.000 0.00 0.00 0.00 5.14
96 97 3.074412 TCAGAAGCTTCCCAAAATCGTC 58.926 45.455 22.81 0.00 0.00 4.20
98 99 2.162408 GGTCAGAAGCTTCCCAAAATCG 59.838 50.000 22.81 2.17 0.00 3.34
129 130 6.091034 GCGTACAGAAAACCAAAAAGGAAAAA 59.909 34.615 0.00 0.00 41.22 1.94
130 131 5.577554 GCGTACAGAAAACCAAAAAGGAAAA 59.422 36.000 0.00 0.00 41.22 2.29
131 132 5.103687 GCGTACAGAAAACCAAAAAGGAAA 58.896 37.500 0.00 0.00 41.22 3.13
132 133 4.440387 GGCGTACAGAAAACCAAAAAGGAA 60.440 41.667 0.00 0.00 41.22 3.36
133 134 3.067040 GGCGTACAGAAAACCAAAAAGGA 59.933 43.478 0.00 0.00 41.22 3.36
134 135 3.067601 AGGCGTACAGAAAACCAAAAAGG 59.932 43.478 0.00 0.00 45.67 3.11
135 136 4.301637 AGGCGTACAGAAAACCAAAAAG 57.698 40.909 0.00 0.00 0.00 2.27
136 137 4.722361 AAGGCGTACAGAAAACCAAAAA 57.278 36.364 0.00 0.00 0.00 1.94
137 138 4.722361 AAAGGCGTACAGAAAACCAAAA 57.278 36.364 0.00 0.00 0.00 2.44
138 139 4.722361 AAAAGGCGTACAGAAAACCAAA 57.278 36.364 0.00 0.00 0.00 3.28
139 140 6.394025 AATAAAAGGCGTACAGAAAACCAA 57.606 33.333 0.00 0.00 0.00 3.67
140 141 6.210078 CAAATAAAAGGCGTACAGAAAACCA 58.790 36.000 0.00 0.00 0.00 3.67
141 142 5.631929 CCAAATAAAAGGCGTACAGAAAACC 59.368 40.000 0.00 0.00 0.00 3.27
142 143 6.210796 ACCAAATAAAAGGCGTACAGAAAAC 58.789 36.000 0.00 0.00 0.00 2.43
143 144 6.394025 ACCAAATAAAAGGCGTACAGAAAA 57.606 33.333 0.00 0.00 0.00 2.29
144 145 6.394025 AACCAAATAAAAGGCGTACAGAAA 57.606 33.333 0.00 0.00 0.00 2.52
145 146 6.394025 AAACCAAATAAAAGGCGTACAGAA 57.606 33.333 0.00 0.00 0.00 3.02
146 147 6.394025 AAAACCAAATAAAAGGCGTACAGA 57.606 33.333 0.00 0.00 0.00 3.41
147 148 5.631929 GGAAAACCAAATAAAAGGCGTACAG 59.368 40.000 0.00 0.00 0.00 2.74
148 149 5.302313 AGGAAAACCAAATAAAAGGCGTACA 59.698 36.000 0.00 0.00 0.00 2.90
149 150 5.775686 AGGAAAACCAAATAAAAGGCGTAC 58.224 37.500 0.00 0.00 0.00 3.67
150 151 6.408107 AAGGAAAACCAAATAAAAGGCGTA 57.592 33.333 0.00 0.00 0.00 4.42
151 152 4.948341 AGGAAAACCAAATAAAAGGCGT 57.052 36.364 0.00 0.00 0.00 5.68
152 153 6.612247 AAAAGGAAAACCAAATAAAAGGCG 57.388 33.333 0.00 0.00 0.00 5.52
159 160 9.930693 ACGCATTTATAAAAGGAAAACCAAATA 57.069 25.926 1.21 0.00 0.00 1.40
160 161 8.716909 CACGCATTTATAAAAGGAAAACCAAAT 58.283 29.630 1.21 0.00 0.00 2.32
161 162 7.926555 TCACGCATTTATAAAAGGAAAACCAAA 59.073 29.630 1.21 0.00 0.00 3.28
162 163 7.382759 GTCACGCATTTATAAAAGGAAAACCAA 59.617 33.333 1.21 0.00 0.00 3.67
163 164 6.864165 GTCACGCATTTATAAAAGGAAAACCA 59.136 34.615 1.21 0.00 0.00 3.67
164 165 6.309494 GGTCACGCATTTATAAAAGGAAAACC 59.691 38.462 1.21 3.68 0.00 3.27
165 166 7.088272 AGGTCACGCATTTATAAAAGGAAAAC 58.912 34.615 1.21 0.00 0.00 2.43
166 167 7.222000 AGGTCACGCATTTATAAAAGGAAAA 57.778 32.000 1.21 0.00 0.00 2.29
167 168 6.827586 AGGTCACGCATTTATAAAAGGAAA 57.172 33.333 1.21 0.00 0.00 3.13
168 169 6.827586 AAGGTCACGCATTTATAAAAGGAA 57.172 33.333 1.21 0.00 0.00 3.36
169 170 6.827586 AAAGGTCACGCATTTATAAAAGGA 57.172 33.333 1.21 0.00 28.37 3.36
170 171 7.883229 AAAAAGGTCACGCATTTATAAAAGG 57.117 32.000 1.21 0.00 30.21 3.11
197 198 4.400251 TCATGAATTTGGGCAGAAGATCAC 59.600 41.667 0.00 0.00 0.00 3.06
198 199 4.400251 GTCATGAATTTGGGCAGAAGATCA 59.600 41.667 0.00 0.00 0.00 2.92
199 200 4.202090 GGTCATGAATTTGGGCAGAAGATC 60.202 45.833 0.00 0.00 0.00 2.75
200 201 3.703052 GGTCATGAATTTGGGCAGAAGAT 59.297 43.478 0.00 0.00 0.00 2.40
201 202 3.091545 GGTCATGAATTTGGGCAGAAGA 58.908 45.455 0.00 0.00 0.00 2.87
202 203 3.094572 AGGTCATGAATTTGGGCAGAAG 58.905 45.455 0.00 0.00 0.00 2.85
203 204 3.173953 AGGTCATGAATTTGGGCAGAA 57.826 42.857 0.00 0.00 0.00 3.02
204 205 2.905415 AGGTCATGAATTTGGGCAGA 57.095 45.000 0.00 0.00 0.00 4.26
205 206 3.967332 AAAGGTCATGAATTTGGGCAG 57.033 42.857 0.00 0.00 0.00 4.85
206 207 3.903090 AGAAAAGGTCATGAATTTGGGCA 59.097 39.130 0.00 0.00 0.00 5.36
207 208 4.021192 TGAGAAAAGGTCATGAATTTGGGC 60.021 41.667 0.00 0.00 0.00 5.36
208 209 5.726980 TGAGAAAAGGTCATGAATTTGGG 57.273 39.130 0.00 0.00 0.00 4.12
209 210 8.436046 TTTTTGAGAAAAGGTCATGAATTTGG 57.564 30.769 0.00 0.00 31.41 3.28
343 344 8.439286 CCTTGAAAAATTTCACGAGTTCAAAAA 58.561 29.630 12.39 0.00 45.99 1.94
344 345 7.600752 ACCTTGAAAAATTTCACGAGTTCAAAA 59.399 29.630 12.39 0.00 45.99 2.44
345 346 7.093992 ACCTTGAAAAATTTCACGAGTTCAAA 58.906 30.769 12.39 0.00 45.99 2.69
346 347 6.626302 ACCTTGAAAAATTTCACGAGTTCAA 58.374 32.000 12.39 11.16 45.99 2.69
347 348 6.202516 ACCTTGAAAAATTTCACGAGTTCA 57.797 33.333 12.39 0.00 45.99 3.18
348 349 6.530181 ACAACCTTGAAAAATTTCACGAGTTC 59.470 34.615 12.39 0.00 45.99 3.01
349 350 6.310224 CACAACCTTGAAAAATTTCACGAGTT 59.690 34.615 12.39 10.90 45.99 3.01
350 351 5.804979 CACAACCTTGAAAAATTTCACGAGT 59.195 36.000 12.39 6.44 45.99 4.18
351 352 6.033341 TCACAACCTTGAAAAATTTCACGAG 58.967 36.000 12.39 7.12 45.99 4.18
352 353 5.955488 TCACAACCTTGAAAAATTTCACGA 58.045 33.333 12.39 0.00 45.99 4.35
353 354 6.697019 AGATCACAACCTTGAAAAATTTCACG 59.303 34.615 8.04 6.73 45.99 4.35
354 355 8.424274 AAGATCACAACCTTGAAAAATTTCAC 57.576 30.769 8.04 0.00 45.99 3.18
355 356 9.447157 AAAAGATCACAACCTTGAAAAATTTCA 57.553 25.926 4.52 4.52 44.78 2.69
401 402 4.563184 CGAAACATTTCACGGGTTCAAAAA 59.437 37.500 5.28 0.00 37.01 1.94
402 403 4.106197 CGAAACATTTCACGGGTTCAAAA 58.894 39.130 5.28 0.00 37.01 2.44
403 404 3.377485 TCGAAACATTTCACGGGTTCAAA 59.623 39.130 5.28 0.00 37.01 2.69
404 405 2.943690 TCGAAACATTTCACGGGTTCAA 59.056 40.909 5.28 0.00 37.01 2.69
405 406 2.546368 CTCGAAACATTTCACGGGTTCA 59.454 45.455 5.28 0.00 37.01 3.18
406 407 2.546789 ACTCGAAACATTTCACGGGTTC 59.453 45.455 5.28 0.00 35.98 3.62
407 408 2.567985 ACTCGAAACATTTCACGGGTT 58.432 42.857 5.28 0.00 35.98 4.11
408 409 2.249844 ACTCGAAACATTTCACGGGT 57.750 45.000 5.28 0.00 37.01 5.28
409 410 3.242936 ACAAACTCGAAACATTTCACGGG 60.243 43.478 5.28 0.00 37.01 5.28
410 411 3.723764 CACAAACTCGAAACATTTCACGG 59.276 43.478 5.28 0.00 37.01 4.94
411 412 4.583426 TCACAAACTCGAAACATTTCACG 58.417 39.130 5.28 0.00 37.01 4.35
412 413 6.027749 AGTTCACAAACTCGAAACATTTCAC 58.972 36.000 5.28 0.00 42.10 3.18
413 414 6.189677 AGTTCACAAACTCGAAACATTTCA 57.810 33.333 5.28 0.00 42.10 2.69
414 415 6.967199 AGAAGTTCACAAACTCGAAACATTTC 59.033 34.615 5.50 0.00 45.07 2.17
415 416 6.852664 AGAAGTTCACAAACTCGAAACATTT 58.147 32.000 5.50 0.00 45.07 2.32
416 417 6.316390 AGAGAAGTTCACAAACTCGAAACATT 59.684 34.615 5.50 0.00 45.07 2.71
417 418 5.817816 AGAGAAGTTCACAAACTCGAAACAT 59.182 36.000 5.50 0.00 45.07 2.71
418 419 5.175859 AGAGAAGTTCACAAACTCGAAACA 58.824 37.500 5.50 0.00 45.07 2.83
419 420 5.291128 TGAGAGAAGTTCACAAACTCGAAAC 59.709 40.000 5.50 0.00 45.07 2.78
420 421 5.416083 TGAGAGAAGTTCACAAACTCGAAA 58.584 37.500 5.50 0.00 45.07 3.46
421 422 5.006153 TGAGAGAAGTTCACAAACTCGAA 57.994 39.130 5.50 0.00 45.07 3.71
422 423 4.649088 TGAGAGAAGTTCACAAACTCGA 57.351 40.909 5.50 0.00 45.07 4.04
423 424 5.718649 TTTGAGAGAAGTTCACAAACTCG 57.281 39.130 5.50 0.00 45.07 4.18
424 425 6.260936 TGGATTTGAGAGAAGTTCACAAACTC 59.739 38.462 18.07 16.02 45.08 3.01
425 426 6.122277 TGGATTTGAGAGAAGTTCACAAACT 58.878 36.000 18.07 11.39 45.08 2.66
426 427 6.377327 TGGATTTGAGAGAAGTTCACAAAC 57.623 37.500 18.07 13.77 45.08 2.93
427 428 6.772233 TCATGGATTTGAGAGAAGTTCACAAA 59.228 34.615 18.03 18.03 45.89 2.83
428 429 6.298361 TCATGGATTTGAGAGAAGTTCACAA 58.702 36.000 5.50 5.94 35.06 3.33
429 430 5.868454 TCATGGATTTGAGAGAAGTTCACA 58.132 37.500 5.50 0.00 0.00 3.58
430 431 6.998968 ATCATGGATTTGAGAGAAGTTCAC 57.001 37.500 5.50 0.00 0.00 3.18
431 432 8.413309 AAAATCATGGATTTGAGAGAAGTTCA 57.587 30.769 5.50 0.00 40.77 3.18
455 456 6.940739 TGAAAAAGTTCATGGGACTCAAAAA 58.059 32.000 0.00 0.00 38.88 1.94
456 457 6.537453 TGAAAAAGTTCATGGGACTCAAAA 57.463 33.333 0.00 0.00 38.88 2.44
457 458 6.154363 ACTTGAAAAAGTTCATGGGACTCAAA 59.846 34.615 0.00 0.00 43.29 2.69
458 459 5.656416 ACTTGAAAAAGTTCATGGGACTCAA 59.344 36.000 0.00 0.00 43.29 3.02
459 460 5.200483 ACTTGAAAAAGTTCATGGGACTCA 58.800 37.500 0.00 0.00 43.29 3.41
460 461 5.774498 ACTTGAAAAAGTTCATGGGACTC 57.226 39.130 0.00 0.00 43.29 3.36
494 495 8.549338 AAATGGAGAAAAACACGGTTTAAAAA 57.451 26.923 3.01 0.00 0.00 1.94
495 496 8.549338 AAAATGGAGAAAAACACGGTTTAAAA 57.451 26.923 3.01 0.00 0.00 1.52
496 497 7.817962 TGAAAATGGAGAAAAACACGGTTTAAA 59.182 29.630 3.01 0.00 0.00 1.52
497 498 7.321153 TGAAAATGGAGAAAAACACGGTTTAA 58.679 30.769 3.01 0.00 0.00 1.52
498 499 6.864342 TGAAAATGGAGAAAAACACGGTTTA 58.136 32.000 3.01 0.00 0.00 2.01
499 500 5.725362 TGAAAATGGAGAAAAACACGGTTT 58.275 33.333 0.00 0.00 0.00 3.27
500 501 5.331876 TGAAAATGGAGAAAAACACGGTT 57.668 34.783 0.00 0.00 0.00 4.44
501 502 4.993029 TGAAAATGGAGAAAAACACGGT 57.007 36.364 0.00 0.00 0.00 4.83
502 503 5.527951 TCATGAAAATGGAGAAAAACACGG 58.472 37.500 0.00 0.00 0.00 4.94
503 504 5.117592 GCTCATGAAAATGGAGAAAAACACG 59.882 40.000 0.00 0.00 0.00 4.49
504 505 5.984926 TGCTCATGAAAATGGAGAAAAACAC 59.015 36.000 0.00 0.00 0.00 3.32
505 506 6.159299 TGCTCATGAAAATGGAGAAAAACA 57.841 33.333 0.00 0.00 0.00 2.83
506 507 7.662604 AATGCTCATGAAAATGGAGAAAAAC 57.337 32.000 0.00 0.00 0.00 2.43
507 508 8.680039 AAAATGCTCATGAAAATGGAGAAAAA 57.320 26.923 0.00 0.00 0.00 1.94
508 509 8.152246 AGAAAATGCTCATGAAAATGGAGAAAA 58.848 29.630 0.00 0.00 0.00 2.29
509 510 7.673180 AGAAAATGCTCATGAAAATGGAGAAA 58.327 30.769 0.00 0.00 0.00 2.52
510 511 7.235935 AGAAAATGCTCATGAAAATGGAGAA 57.764 32.000 0.00 0.00 0.00 2.87
511 512 6.845758 AGAAAATGCTCATGAAAATGGAGA 57.154 33.333 0.00 0.00 0.00 3.71
512 513 8.991243 TTTAGAAAATGCTCATGAAAATGGAG 57.009 30.769 0.00 0.00 0.00 3.86
513 514 9.373603 CATTTAGAAAATGCTCATGAAAATGGA 57.626 29.630 12.67 0.00 31.43 3.41
514 515 9.158233 ACATTTAGAAAATGCTCATGAAAATGG 57.842 29.630 19.87 2.56 36.56 3.16
517 518 9.414295 CAGACATTTAGAAAATGCTCATGAAAA 57.586 29.630 11.32 0.00 0.00 2.29
518 519 8.579006 ACAGACATTTAGAAAATGCTCATGAAA 58.421 29.630 11.32 0.00 0.00 2.69
519 520 8.114331 ACAGACATTTAGAAAATGCTCATGAA 57.886 30.769 11.32 0.00 0.00 2.57
520 521 7.692460 ACAGACATTTAGAAAATGCTCATGA 57.308 32.000 11.32 0.00 0.00 3.07
521 522 8.752766 AAACAGACATTTAGAAAATGCTCATG 57.247 30.769 11.32 8.09 0.00 3.07
522 523 9.768662 AAAAACAGACATTTAGAAAATGCTCAT 57.231 25.926 11.32 0.00 0.00 2.90
554 555 5.288232 TCGTTGACTTTTCAAGCAAAATGTG 59.712 36.000 0.00 0.00 42.60 3.21
555 556 5.406649 TCGTTGACTTTTCAAGCAAAATGT 58.593 33.333 0.00 0.00 42.60 2.71
556 557 5.947503 TCGTTGACTTTTCAAGCAAAATG 57.052 34.783 0.00 0.00 42.60 2.32
557 558 5.463061 CCATCGTTGACTTTTCAAGCAAAAT 59.537 36.000 0.00 0.00 42.60 1.82
558 559 4.803088 CCATCGTTGACTTTTCAAGCAAAA 59.197 37.500 0.00 0.00 42.60 2.44
559 560 4.097135 TCCATCGTTGACTTTTCAAGCAAA 59.903 37.500 0.00 0.00 42.60 3.68
560 561 3.629855 TCCATCGTTGACTTTTCAAGCAA 59.370 39.130 0.00 0.00 42.60 3.91
561 562 3.003275 GTCCATCGTTGACTTTTCAAGCA 59.997 43.478 0.00 0.00 42.60 3.91
562 563 3.555518 GTCCATCGTTGACTTTTCAAGC 58.444 45.455 0.00 0.00 42.60 4.01
563 564 3.363970 CGGTCCATCGTTGACTTTTCAAG 60.364 47.826 0.00 0.00 42.60 3.02
564 565 2.546368 CGGTCCATCGTTGACTTTTCAA 59.454 45.455 0.00 0.00 39.55 2.69
565 566 2.139917 CGGTCCATCGTTGACTTTTCA 58.860 47.619 0.00 0.00 33.22 2.69
566 567 1.463444 CCGGTCCATCGTTGACTTTTC 59.537 52.381 0.00 0.00 33.22 2.29
567 568 1.519408 CCGGTCCATCGTTGACTTTT 58.481 50.000 0.00 0.00 33.22 2.27
568 569 0.953960 GCCGGTCCATCGTTGACTTT 60.954 55.000 1.90 0.00 33.22 2.66
569 570 1.375523 GCCGGTCCATCGTTGACTT 60.376 57.895 1.90 0.00 33.22 3.01
570 571 2.264794 GCCGGTCCATCGTTGACT 59.735 61.111 1.90 0.00 33.22 3.41
571 572 2.818274 GGCCGGTCCATCGTTGAC 60.818 66.667 1.90 0.00 34.01 3.18
572 573 2.884980 TTGGCCGGTCCATCGTTGA 61.885 57.895 16.81 0.32 46.04 3.18
573 574 2.359354 TTGGCCGGTCCATCGTTG 60.359 61.111 16.81 0.00 46.04 4.10
574 575 2.359478 GTTGGCCGGTCCATCGTT 60.359 61.111 16.81 0.00 46.04 3.85
575 576 4.404098 GGTTGGCCGGTCCATCGT 62.404 66.667 16.81 0.00 46.04 3.73
576 577 3.697439 ATGGTTGGCCGGTCCATCG 62.697 63.158 16.81 0.00 46.04 3.84
577 578 2.120909 CATGGTTGGCCGGTCCATC 61.121 63.158 18.98 15.38 46.04 3.51
578 579 2.044053 CATGGTTGGCCGGTCCAT 60.044 61.111 16.81 16.94 46.04 3.41
579 580 3.253061 TCATGGTTGGCCGGTCCA 61.253 61.111 12.86 12.86 44.85 4.02
580 581 2.750237 GTCATGGTTGGCCGGTCC 60.750 66.667 2.12 5.67 37.67 4.46
581 582 2.750237 GGTCATGGTTGGCCGGTC 60.750 66.667 0.00 0.00 38.00 4.79
586 587 1.971167 TTCGCTGGTCATGGTTGGC 60.971 57.895 0.00 0.00 0.00 4.52
587 588 1.586154 GGTTCGCTGGTCATGGTTGG 61.586 60.000 0.00 0.00 0.00 3.77
588 589 0.888736 TGGTTCGCTGGTCATGGTTG 60.889 55.000 0.00 0.00 0.00 3.77
589 590 0.606401 CTGGTTCGCTGGTCATGGTT 60.606 55.000 0.00 0.00 0.00 3.67
590 591 1.003355 CTGGTTCGCTGGTCATGGT 60.003 57.895 0.00 0.00 0.00 3.55
591 592 1.746615 CCTGGTTCGCTGGTCATGG 60.747 63.158 0.00 0.00 0.00 3.66
592 593 0.321564 TTCCTGGTTCGCTGGTCATG 60.322 55.000 0.00 0.00 0.00 3.07
593 594 0.400213 TTTCCTGGTTCGCTGGTCAT 59.600 50.000 0.00 0.00 0.00 3.06
594 595 0.181587 TTTTCCTGGTTCGCTGGTCA 59.818 50.000 0.00 0.00 0.00 4.02
595 596 0.591659 GTTTTCCTGGTTCGCTGGTC 59.408 55.000 0.00 0.00 0.00 4.02
596 597 0.822121 GGTTTTCCTGGTTCGCTGGT 60.822 55.000 0.00 0.00 36.94 4.00
597 598 1.852067 CGGTTTTCCTGGTTCGCTGG 61.852 60.000 0.00 0.00 37.95 4.85
598 599 1.574428 CGGTTTTCCTGGTTCGCTG 59.426 57.895 0.00 0.00 37.95 5.18
599 600 1.599797 CCGGTTTTCCTGGTTCGCT 60.600 57.895 0.00 0.00 37.95 4.93
600 601 1.895231 ACCGGTTTTCCTGGTTCGC 60.895 57.895 0.00 0.00 41.50 4.70
601 602 0.816421 ACACCGGTTTTCCTGGTTCG 60.816 55.000 2.97 0.00 42.02 3.95
602 603 0.666374 CACACCGGTTTTCCTGGTTC 59.334 55.000 2.97 0.00 42.02 3.62
603 604 1.388837 GCACACCGGTTTTCCTGGTT 61.389 55.000 2.97 0.00 42.02 3.67
604 605 1.826487 GCACACCGGTTTTCCTGGT 60.826 57.895 2.97 0.00 43.68 4.00
605 606 2.561037 GGCACACCGGTTTTCCTGG 61.561 63.158 2.97 0.00 38.77 4.45
606 607 2.561037 GGGCACACCGGTTTTCCTG 61.561 63.158 2.97 0.00 37.95 3.86
607 608 2.203437 GGGCACACCGGTTTTCCT 60.203 61.111 2.97 0.00 37.95 3.36
608 609 3.299977 GGGGCACACCGGTTTTCC 61.300 66.667 2.97 1.29 41.60 3.13
616 617 4.404098 ATTCGGTCGGGGCACACC 62.404 66.667 0.00 0.00 39.11 4.16
617 618 3.124921 CATTCGGTCGGGGCACAC 61.125 66.667 0.00 0.00 0.00 3.82
619 620 4.778143 AGCATTCGGTCGGGGCAC 62.778 66.667 0.00 0.00 0.00 5.01
620 621 4.467084 GAGCATTCGGTCGGGGCA 62.467 66.667 0.00 0.00 0.00 5.36
629 630 3.329670 TGGCAAAACCACGAGCATTCG 62.330 52.381 0.00 0.00 46.36 3.34
630 631 0.313672 TGGCAAAACCACGAGCATTC 59.686 50.000 0.00 0.00 46.36 2.67
631 632 2.424474 TGGCAAAACCACGAGCATT 58.576 47.368 0.00 0.00 46.36 3.56
632 633 4.172625 TGGCAAAACCACGAGCAT 57.827 50.000 0.00 0.00 46.36 3.79
640 641 5.146010 TCCATTTAAGACATGGCAAAACC 57.854 39.130 0.00 0.00 41.10 3.27
641 642 7.009174 CGTATTCCATTTAAGACATGGCAAAAC 59.991 37.037 0.00 0.00 41.10 2.43
642 643 7.032580 CGTATTCCATTTAAGACATGGCAAAA 58.967 34.615 0.00 0.76 41.10 2.44
643 644 6.151985 ACGTATTCCATTTAAGACATGGCAAA 59.848 34.615 0.00 0.00 41.10 3.68
644 645 5.650266 ACGTATTCCATTTAAGACATGGCAA 59.350 36.000 0.00 0.00 41.10 4.52
645 646 5.065859 CACGTATTCCATTTAAGACATGGCA 59.934 40.000 0.00 0.00 41.10 4.92
646 647 5.065988 ACACGTATTCCATTTAAGACATGGC 59.934 40.000 0.00 0.00 41.10 4.40
647 648 6.093495 ACACACGTATTCCATTTAAGACATGG 59.907 38.462 0.00 0.00 42.51 3.66
648 649 7.072177 ACACACGTATTCCATTTAAGACATG 57.928 36.000 0.00 0.00 0.00 3.21
649 650 7.681939 AACACACGTATTCCATTTAAGACAT 57.318 32.000 0.00 0.00 0.00 3.06
650 651 7.226918 TGAAACACACGTATTCCATTTAAGACA 59.773 33.333 0.00 0.00 0.00 3.41
651 652 7.577979 TGAAACACACGTATTCCATTTAAGAC 58.422 34.615 0.00 0.00 0.00 3.01
652 653 7.731882 TGAAACACACGTATTCCATTTAAGA 57.268 32.000 0.00 0.00 0.00 2.10
653 654 8.450964 AGATGAAACACACGTATTCCATTTAAG 58.549 33.333 0.00 0.00 0.00 1.85
654 655 8.330466 AGATGAAACACACGTATTCCATTTAA 57.670 30.769 0.00 0.00 0.00 1.52
655 656 7.604545 TGAGATGAAACACACGTATTCCATTTA 59.395 33.333 0.00 0.00 0.00 1.40
656 657 6.429692 TGAGATGAAACACACGTATTCCATTT 59.570 34.615 0.00 0.00 0.00 2.32
657 658 5.937540 TGAGATGAAACACACGTATTCCATT 59.062 36.000 0.00 0.00 0.00 3.16
658 659 5.487433 TGAGATGAAACACACGTATTCCAT 58.513 37.500 0.00 0.00 0.00 3.41
659 660 4.888917 TGAGATGAAACACACGTATTCCA 58.111 39.130 0.00 0.00 0.00 3.53
660 661 5.856126 TTGAGATGAAACACACGTATTCC 57.144 39.130 0.00 0.00 0.00 3.01
661 662 8.067784 TCTTTTTGAGATGAAACACACGTATTC 58.932 33.333 0.00 0.00 0.00 1.75
662 663 7.925993 TCTTTTTGAGATGAAACACACGTATT 58.074 30.769 0.00 0.00 0.00 1.89
663 664 7.490962 TCTTTTTGAGATGAAACACACGTAT 57.509 32.000 0.00 0.00 0.00 3.06
664 665 6.912203 TCTTTTTGAGATGAAACACACGTA 57.088 33.333 0.00 0.00 0.00 3.57
665 666 5.811399 TCTTTTTGAGATGAAACACACGT 57.189 34.783 0.00 0.00 0.00 4.49
666 667 7.504922 TTTTCTTTTTGAGATGAAACACACG 57.495 32.000 0.00 0.00 33.49 4.49
700 701 9.772973 AACGGGAAAGCTTCTTTTTATTTATTT 57.227 25.926 0.00 0.00 0.00 1.40
701 702 9.419297 GAACGGGAAAGCTTCTTTTTATTTATT 57.581 29.630 0.00 0.00 0.00 1.40
702 703 8.803235 AGAACGGGAAAGCTTCTTTTTATTTAT 58.197 29.630 0.00 0.00 0.00 1.40
703 704 8.173542 AGAACGGGAAAGCTTCTTTTTATTTA 57.826 30.769 0.00 0.00 0.00 1.40
704 705 7.050970 AGAACGGGAAAGCTTCTTTTTATTT 57.949 32.000 0.00 0.00 0.00 1.40
705 706 6.650427 AGAACGGGAAAGCTTCTTTTTATT 57.350 33.333 0.00 0.00 0.00 1.40
706 707 6.940867 AGTAGAACGGGAAAGCTTCTTTTTAT 59.059 34.615 0.00 0.00 0.00 1.40
707 708 6.293698 AGTAGAACGGGAAAGCTTCTTTTTA 58.706 36.000 0.00 0.00 0.00 1.52
708 709 5.131067 AGTAGAACGGGAAAGCTTCTTTTT 58.869 37.500 0.00 0.00 0.00 1.94
709 710 4.715713 AGTAGAACGGGAAAGCTTCTTTT 58.284 39.130 0.00 0.00 0.00 2.27
710 711 4.353383 AGTAGAACGGGAAAGCTTCTTT 57.647 40.909 0.00 0.00 0.00 2.52
711 712 4.617762 CGTAGTAGAACGGGAAAGCTTCTT 60.618 45.833 0.00 0.00 39.19 2.52
712 713 3.119566 CGTAGTAGAACGGGAAAGCTTCT 60.120 47.826 0.00 0.00 39.19 2.85
713 714 3.119708 TCGTAGTAGAACGGGAAAGCTTC 60.120 47.826 0.00 0.00 43.05 3.86
714 715 2.821969 TCGTAGTAGAACGGGAAAGCTT 59.178 45.455 0.00 0.00 43.05 3.74
715 716 2.440409 TCGTAGTAGAACGGGAAAGCT 58.560 47.619 0.00 0.00 43.05 3.74
716 717 2.919859 GTTCGTAGTAGAACGGGAAAGC 59.080 50.000 0.00 0.00 43.05 3.51
725 726 6.665474 TGTTTTGCTTTGTTCGTAGTAGAA 57.335 33.333 0.00 0.00 0.00 2.10
726 727 6.665474 TTGTTTTGCTTTGTTCGTAGTAGA 57.335 33.333 0.00 0.00 0.00 2.59
727 728 7.184106 TCTTTGTTTTGCTTTGTTCGTAGTAG 58.816 34.615 0.00 0.00 0.00 2.57
728 729 7.074507 TCTTTGTTTTGCTTTGTTCGTAGTA 57.925 32.000 0.00 0.00 0.00 1.82
729 730 5.945155 TCTTTGTTTTGCTTTGTTCGTAGT 58.055 33.333 0.00 0.00 0.00 2.73
730 731 6.472163 ACATCTTTGTTTTGCTTTGTTCGTAG 59.528 34.615 0.00 0.00 29.55 3.51
731 732 6.252441 CACATCTTTGTTTTGCTTTGTTCGTA 59.748 34.615 0.00 0.00 32.34 3.43
732 733 5.062058 CACATCTTTGTTTTGCTTTGTTCGT 59.938 36.000 0.00 0.00 32.34 3.85
733 734 5.483213 CACATCTTTGTTTTGCTTTGTTCG 58.517 37.500 0.00 0.00 32.34 3.95
734 735 5.163874 TGCACATCTTTGTTTTGCTTTGTTC 60.164 36.000 0.00 0.00 32.34 3.18
735 736 4.694509 TGCACATCTTTGTTTTGCTTTGTT 59.305 33.333 0.00 0.00 32.34 2.83
736 737 4.252073 TGCACATCTTTGTTTTGCTTTGT 58.748 34.783 0.00 0.00 32.34 2.83
737 738 4.330620 ACTGCACATCTTTGTTTTGCTTTG 59.669 37.500 0.00 0.00 32.34 2.77
738 739 4.506758 ACTGCACATCTTTGTTTTGCTTT 58.493 34.783 0.00 0.00 32.34 3.51
739 740 4.127566 ACTGCACATCTTTGTTTTGCTT 57.872 36.364 0.00 0.00 32.34 3.91
740 741 3.806625 ACTGCACATCTTTGTTTTGCT 57.193 38.095 0.00 0.00 32.34 3.91
741 742 3.983344 CCTACTGCACATCTTTGTTTTGC 59.017 43.478 0.00 0.00 32.34 3.68
742 743 3.983344 GCCTACTGCACATCTTTGTTTTG 59.017 43.478 0.00 0.00 40.77 2.44
743 744 3.891366 AGCCTACTGCACATCTTTGTTTT 59.109 39.130 0.00 0.00 44.83 2.43
744 745 3.254166 CAGCCTACTGCACATCTTTGTTT 59.746 43.478 0.00 0.00 44.83 2.83
745 746 2.816087 CAGCCTACTGCACATCTTTGTT 59.184 45.455 0.00 0.00 44.83 2.83
746 747 2.430465 CAGCCTACTGCACATCTTTGT 58.570 47.619 0.00 0.00 44.83 2.83
758 759 3.314331 ACACTGCCGCAGCCTACT 61.314 61.111 20.56 0.00 38.69 2.57
759 760 2.501223 TACACACTGCCGCAGCCTAC 62.501 60.000 20.56 0.00 38.69 3.18
760 761 1.613317 ATACACACTGCCGCAGCCTA 61.613 55.000 20.56 5.00 38.69 3.93
761 762 1.613317 TATACACACTGCCGCAGCCT 61.613 55.000 20.56 2.27 38.69 4.58
762 763 0.532862 ATATACACACTGCCGCAGCC 60.533 55.000 20.56 0.00 38.69 4.85
763 764 2.148916 TATATACACACTGCCGCAGC 57.851 50.000 20.56 0.00 34.37 5.25
764 765 2.995939 CCATATATACACACTGCCGCAG 59.004 50.000 19.08 19.08 37.52 5.18
765 766 2.289382 CCCATATATACACACTGCCGCA 60.289 50.000 0.00 0.00 0.00 5.69
766 767 2.289444 ACCCATATATACACACTGCCGC 60.289 50.000 0.00 0.00 0.00 6.53
767 768 3.258372 AGACCCATATATACACACTGCCG 59.742 47.826 0.00 0.00 0.00 5.69
768 769 4.040461 ACAGACCCATATATACACACTGCC 59.960 45.833 0.00 0.00 0.00 4.85
769 770 5.215252 ACAGACCCATATATACACACTGC 57.785 43.478 0.00 0.00 0.00 4.40
770 771 5.304357 TGGACAGACCCATATATACACACTG 59.696 44.000 0.00 0.00 38.00 3.66
771 772 5.304614 GTGGACAGACCCATATATACACACT 59.695 44.000 0.00 0.00 38.66 3.55
772 773 5.539048 GTGGACAGACCCATATATACACAC 58.461 45.833 0.00 0.00 38.66 3.82
773 774 4.279922 CGTGGACAGACCCATATATACACA 59.720 45.833 0.00 0.00 38.66 3.72
774 775 4.806330 CGTGGACAGACCCATATATACAC 58.194 47.826 0.00 0.00 38.66 2.90
775 776 3.257375 GCGTGGACAGACCCATATATACA 59.743 47.826 0.00 0.00 38.66 2.29
776 777 3.257375 TGCGTGGACAGACCCATATATAC 59.743 47.826 0.00 0.00 38.66 1.47
777 778 3.502356 TGCGTGGACAGACCCATATATA 58.498 45.455 0.00 0.00 38.66 0.86
778 779 2.325484 TGCGTGGACAGACCCATATAT 58.675 47.619 0.00 0.00 38.66 0.86
779 780 1.783071 TGCGTGGACAGACCCATATA 58.217 50.000 0.00 0.00 38.66 0.86
780 781 1.070758 GATGCGTGGACAGACCCATAT 59.929 52.381 0.00 0.00 38.66 1.78
781 782 0.464036 GATGCGTGGACAGACCCATA 59.536 55.000 0.00 0.00 38.66 2.74
782 783 1.221840 GATGCGTGGACAGACCCAT 59.778 57.895 0.00 0.00 38.66 4.00
783 784 0.613572 TAGATGCGTGGACAGACCCA 60.614 55.000 0.00 0.00 38.00 4.51
784 785 0.103208 CTAGATGCGTGGACAGACCC 59.897 60.000 0.00 0.00 38.00 4.46
785 786 0.818296 ACTAGATGCGTGGACAGACC 59.182 55.000 0.00 0.00 39.54 3.85
786 787 2.683867 AGTACTAGATGCGTGGACAGAC 59.316 50.000 0.00 0.00 0.00 3.51
787 788 3.000684 AGTACTAGATGCGTGGACAGA 57.999 47.619 0.00 0.00 0.00 3.41
809 810 0.034089 CTTGGTCCTTGGGCCTTAGG 60.034 60.000 16.40 16.40 0.00 2.69
810 811 0.034089 CCTTGGTCCTTGGGCCTTAG 60.034 60.000 11.92 8.60 0.00 2.18
811 812 2.083715 CCTTGGTCCTTGGGCCTTA 58.916 57.895 11.92 0.00 0.00 2.69
823 824 3.637273 GACGGACTGGGCCTTGGT 61.637 66.667 4.53 0.45 0.00 3.67
873 874 1.615424 ACCTATGCGGGACTTGGGT 60.615 57.895 0.00 0.00 36.97 4.51
887 888 2.697761 GCGTCGTGGCAGAGACCTA 61.698 63.158 14.86 0.00 34.10 3.08
888 889 4.057428 GCGTCGTGGCAGAGACCT 62.057 66.667 14.86 0.00 34.10 3.85
934 935 1.985116 GGCGAGGGAGAAGAGTGGT 60.985 63.158 0.00 0.00 0.00 4.16
941 942 1.139058 GCTTCTATTGGCGAGGGAGAA 59.861 52.381 0.00 0.00 0.00 2.87
1021 1031 4.576053 TCATGAACGGCATTTAGATCCAAG 59.424 41.667 0.00 0.00 34.15 3.61
1087 1097 3.613494 TCCATCCAAAAATGCACATGG 57.387 42.857 0.00 0.00 33.38 3.66
1195 1207 3.933048 GAGTGGTCGAGGGACGGGA 62.933 68.421 0.00 0.00 44.39 5.14
1209 1223 3.673594 CGACTAAGCCAAGTACCAGAGTG 60.674 52.174 0.00 0.00 0.00 3.51
1340 1357 1.064537 ACAACAAACCGGTACTTGGGT 60.065 47.619 20.33 15.30 38.44 4.51
1572 1747 3.234353 ACCATATCGAGGAAGCTCATGA 58.766 45.455 0.00 0.00 0.00 3.07
1587 1762 3.266772 TGAGGCCAACTTCAAGACCATAT 59.733 43.478 5.01 0.00 0.00 1.78
1644 1824 0.595588 CACATGCAGTTTGCCCGTTA 59.404 50.000 0.00 0.00 44.23 3.18
1645 1825 1.363443 CACATGCAGTTTGCCCGTT 59.637 52.632 0.00 0.00 44.23 4.44
1648 1828 2.810439 TAAACACATGCAGTTTGCCC 57.190 45.000 20.85 0.00 44.23 5.36
1650 1830 3.848019 CGAGATAAACACATGCAGTTTGC 59.152 43.478 20.85 14.60 45.29 3.68
1651 1831 5.281693 TCGAGATAAACACATGCAGTTTG 57.718 39.130 20.85 8.77 39.36 2.93
1652 1832 5.674569 GCATCGAGATAAACACATGCAGTTT 60.675 40.000 17.59 17.59 41.63 2.66
1653 1833 4.201851 GCATCGAGATAAACACATGCAGTT 60.202 41.667 0.00 0.00 37.24 3.16
1654 1834 3.310774 GCATCGAGATAAACACATGCAGT 59.689 43.478 0.00 0.00 37.24 4.40
1655 1835 3.310501 TGCATCGAGATAAACACATGCAG 59.689 43.478 0.32 0.00 41.22 4.41
1656 1836 3.269178 TGCATCGAGATAAACACATGCA 58.731 40.909 0.32 0.32 43.25 3.96
1657 1837 3.950087 TGCATCGAGATAAACACATGC 57.050 42.857 0.00 0.00 37.69 4.06
1658 1838 4.216731 GCATGCATCGAGATAAACACATG 58.783 43.478 14.21 0.00 37.35 3.21
1659 1839 3.878699 TGCATGCATCGAGATAAACACAT 59.121 39.130 18.46 0.00 0.00 3.21
1660 1840 3.269178 TGCATGCATCGAGATAAACACA 58.731 40.909 18.46 0.00 0.00 3.72
1661 1841 3.950087 TGCATGCATCGAGATAAACAC 57.050 42.857 18.46 0.00 0.00 3.32
1662 1842 4.737353 GATGCATGCATCGAGATAAACA 57.263 40.909 37.33 6.45 42.55 2.83
1684 1864 4.353777 TCAGTTGAAGTGGGCTAGATAGT 58.646 43.478 0.00 0.00 0.00 2.12
1689 1869 6.038714 GGATTTAATCAGTTGAAGTGGGCTAG 59.961 42.308 7.29 0.00 0.00 3.42
1692 1872 4.438744 CGGATTTAATCAGTTGAAGTGGGC 60.439 45.833 7.29 0.00 0.00 5.36
1693 1873 4.700213 ACGGATTTAATCAGTTGAAGTGGG 59.300 41.667 7.29 0.00 33.93 4.61
1694 1874 5.880054 ACGGATTTAATCAGTTGAAGTGG 57.120 39.130 7.29 0.00 33.93 4.00
1709 1931 7.705325 CAGTACAGTAAGCTACATAACGGATTT 59.295 37.037 0.00 0.00 0.00 2.17
1717 1939 5.067413 GCAGACCAGTACAGTAAGCTACATA 59.933 44.000 0.00 0.00 0.00 2.29
1731 1953 0.251165 GGGCCAAAAGCAGACCAGTA 60.251 55.000 4.39 0.00 46.50 2.74
1822 2044 8.669243 CAGAGGAAGTTCATATGAAAGTAAACC 58.331 37.037 19.55 15.41 35.58 3.27
1828 2050 6.766944 AGCATCAGAGGAAGTTCATATGAAAG 59.233 38.462 19.55 14.05 32.07 2.62
2006 2228 5.649395 ACATCACAAAGGATCACATACCTTG 59.351 40.000 0.00 0.00 44.44 3.61
2020 2242 9.838975 TTGCAGTTATACAATAACATCACAAAG 57.161 29.630 11.30 0.00 0.00 2.77
2109 2361 4.021192 ACCTGACACAAATTTTATGCCTGG 60.021 41.667 8.78 8.78 0.00 4.45
2245 2534 6.636454 AACCCTAGGTCACAAGAATTATCA 57.364 37.500 8.29 0.00 33.12 2.15
2276 2565 1.079825 TGGGTCACACTATACCTGGGT 59.920 52.381 0.00 0.00 35.97 4.51
2288 2577 8.499288 TTAATATGGACATATAGTGGGTCACA 57.501 34.615 5.32 0.00 33.42 3.58
2321 2610 9.046296 CATGTTAATATCCTGAGGACAAACTAC 57.954 37.037 1.77 0.00 32.98 2.73
2323 2612 7.554118 CACATGTTAATATCCTGAGGACAAACT 59.446 37.037 1.77 0.00 32.98 2.66
2324 2613 7.336931 ACACATGTTAATATCCTGAGGACAAAC 59.663 37.037 1.77 6.73 32.98 2.93
2346 2719 5.373981 AACAAGTGGTCGTTAAAAACACA 57.626 34.783 9.31 0.00 34.65 3.72
2347 2720 7.697291 TCATTAACAAGTGGTCGTTAAAAACAC 59.303 33.333 0.00 0.08 40.07 3.32
2349 2771 7.697291 TGTCATTAACAAGTGGTCGTTAAAAAC 59.303 33.333 0.00 0.00 40.07 2.43
2386 2809 1.003851 ACCACGTGTTGAAGTGTTCG 58.996 50.000 15.65 0.00 36.69 3.95
2398 2821 1.069703 CAATCAGAGTTGCACCACGTG 60.070 52.381 9.08 9.08 36.51 4.49
2423 2846 6.959361 ACAATCAGAATCACACAACTGTTAC 58.041 36.000 0.00 0.00 0.00 2.50
2443 2866 0.541296 AAGCTCCCTGCAGCAACAAT 60.541 50.000 8.66 0.00 45.94 2.71
2447 2870 1.904865 CCAAAGCTCCCTGCAGCAA 60.905 57.895 8.66 0.00 45.94 3.91
2681 3118 9.905713 TTATATGGGTTAATCAGGCAAGATATC 57.094 33.333 0.00 0.00 0.00 1.63
2683 3120 9.739276 CTTTATATGGGTTAATCAGGCAAGATA 57.261 33.333 0.00 0.00 0.00 1.98
2684 3121 8.227507 ACTTTATATGGGTTAATCAGGCAAGAT 58.772 33.333 0.00 0.00 0.00 2.40
2685 3122 7.582719 ACTTTATATGGGTTAATCAGGCAAGA 58.417 34.615 0.00 0.00 0.00 3.02
2686 3123 7.823745 ACTTTATATGGGTTAATCAGGCAAG 57.176 36.000 0.00 0.00 0.00 4.01
2687 3124 9.515226 GATACTTTATATGGGTTAATCAGGCAA 57.485 33.333 0.00 0.00 0.00 4.52
2721 3164 7.478667 GCTTCAGAAATGATAACAAAGTACACG 59.521 37.037 0.00 0.00 0.00 4.49
2734 3261 5.494724 TCAGTAAGCTGCTTCAGAAATGAT 58.505 37.500 19.62 0.00 42.29 2.45
2736 3263 5.618056 TTCAGTAAGCTGCTTCAGAAATG 57.382 39.130 19.62 10.86 42.29 2.32
2780 3324 1.745653 GCCAGTGACTGAAATAAGGGC 59.254 52.381 15.33 1.98 32.44 5.19
2804 3348 2.168496 TGGTACTTCTCAGGTTCCTCG 58.832 52.381 0.00 0.00 0.00 4.63
2877 3421 4.065088 GCATGAACCTTCTTGTACAGTGA 58.935 43.478 0.00 0.00 35.48 3.41
2990 3534 3.144506 AGTGCAGAAATCAGTTGTCTGG 58.855 45.455 1.49 0.00 41.59 3.86
3027 3634 1.459592 GCAGCGAACAGTCACGTTAAT 59.540 47.619 0.00 0.00 0.00 1.40
3091 3698 1.469940 CGTTGAGCCGCTCTACAAGAT 60.470 52.381 27.16 0.00 36.36 2.40
3155 3765 4.341235 CCTAGGGTCGATTACACTCATTCA 59.659 45.833 0.00 0.00 37.17 2.57
3181 3791 3.070734 AGCATGAAGACAGCACTATAGGG 59.929 47.826 4.43 0.00 0.00 3.53
3221 3831 4.046462 TCGCGATACTACTGTTTAATGCC 58.954 43.478 3.71 0.00 0.00 4.40
3222 3832 4.974275 TCTCGCGATACTACTGTTTAATGC 59.026 41.667 10.36 0.00 0.00 3.56
3223 3833 6.427974 TCTCTCGCGATACTACTGTTTAATG 58.572 40.000 10.36 0.00 0.00 1.90
3224 3834 6.482641 TCTCTCTCGCGATACTACTGTTTAAT 59.517 38.462 10.36 0.00 0.00 1.40
3225 3835 5.814188 TCTCTCTCGCGATACTACTGTTTAA 59.186 40.000 10.36 0.00 0.00 1.52
3226 3836 5.233902 GTCTCTCTCGCGATACTACTGTTTA 59.766 44.000 10.36 0.00 0.00 2.01
3227 3837 4.034279 GTCTCTCTCGCGATACTACTGTTT 59.966 45.833 10.36 0.00 0.00 2.83
3228 3838 3.556775 GTCTCTCTCGCGATACTACTGTT 59.443 47.826 10.36 0.00 0.00 3.16
3230 3840 3.124560 TGTCTCTCTCGCGATACTACTG 58.875 50.000 10.36 0.00 0.00 2.74
3332 3944 6.526674 ACAAACTCTGAAACAACGTCAAAATC 59.473 34.615 0.00 0.00 0.00 2.17
3345 3957 6.537355 AGATCCAGATCAACAAACTCTGAAA 58.463 36.000 10.17 0.00 38.96 2.69
3522 4134 0.951558 CCAACCGCAGCTAAAACTGT 59.048 50.000 0.00 0.00 39.96 3.55
3529 4141 0.546122 AATGATCCCAACCGCAGCTA 59.454 50.000 0.00 0.00 0.00 3.32
3635 4273 3.532896 CCGTTTCAAGGCAGCTAGA 57.467 52.632 0.00 0.00 0.00 2.43
3725 4363 7.630242 AATTTTCATATTGTGGACGTGAGAT 57.370 32.000 0.00 0.00 0.00 2.75
3726 4364 8.554835 TTAATTTTCATATTGTGGACGTGAGA 57.445 30.769 0.00 0.00 0.00 3.27
3768 4406 9.401873 GACAAAAACACACTAAACTTTGTTACT 57.598 29.630 0.00 0.00 37.18 2.24
3770 4408 8.578151 AGGACAAAAACACACTAAACTTTGTTA 58.422 29.630 0.00 0.00 37.18 2.41
3771 4409 7.438564 AGGACAAAAACACACTAAACTTTGTT 58.561 30.769 0.00 0.00 37.18 2.83
3773 4411 9.019764 CATAGGACAAAAACACACTAAACTTTG 57.980 33.333 0.00 0.00 0.00 2.77
3775 4413 7.558444 TCCATAGGACAAAAACACACTAAACTT 59.442 33.333 0.00 0.00 0.00 2.66
3776 4414 7.057894 TCCATAGGACAAAAACACACTAAACT 58.942 34.615 0.00 0.00 0.00 2.66
3777 4415 7.266922 TCCATAGGACAAAAACACACTAAAC 57.733 36.000 0.00 0.00 0.00 2.01
3814 4596 2.936202 TCCTTTGCTCAATAGGGATGC 58.064 47.619 9.38 0.00 0.00 3.91
3820 4602 7.844482 CAAAGTTTTGTTCCTTTGCTCAATAG 58.156 34.615 0.00 0.00 40.56 1.73
3859 4641 9.813080 GACTTAACTTGCTGAAGTATTACTTTG 57.187 33.333 10.32 7.98 41.87 2.77
3864 4646 8.946085 CCATTGACTTAACTTGCTGAAGTATTA 58.054 33.333 0.00 0.00 41.87 0.98
3872 4654 5.947228 TTCTCCATTGACTTAACTTGCTG 57.053 39.130 0.00 0.00 0.00 4.41
3873 4655 8.814038 AATATTCTCCATTGACTTAACTTGCT 57.186 30.769 0.00 0.00 0.00 3.91
3874 4656 8.897752 AGAATATTCTCCATTGACTTAACTTGC 58.102 33.333 12.37 0.00 29.94 4.01
3958 4740 8.082242 CCTCTTCGGTTCAAAAAGTTTTCATAT 58.918 33.333 0.32 0.00 0.00 1.78
3959 4741 7.422399 CCTCTTCGGTTCAAAAAGTTTTCATA 58.578 34.615 0.32 0.00 0.00 2.15
4030 4812 5.657474 TCGGAATACTCTAATTCGCACTTT 58.343 37.500 0.00 0.00 36.84 2.66
4031 4813 5.258456 TCGGAATACTCTAATTCGCACTT 57.742 39.130 0.00 0.00 36.84 3.16
4042 4837 5.403512 TGGAAATAGGGATCGGAATACTCT 58.596 41.667 0.00 0.00 0.00 3.24
4053 4848 4.662179 TCAGCTTCTCATGGAAATAGGGAT 59.338 41.667 0.00 0.00 33.07 3.85
4055 4850 4.428294 TCAGCTTCTCATGGAAATAGGG 57.572 45.455 0.00 0.00 33.07 3.53
4058 4853 7.707624 AAAACATCAGCTTCTCATGGAAATA 57.292 32.000 0.00 0.00 33.07 1.40
4094 4892 2.745884 CGGGGCAGAAATCGCACA 60.746 61.111 0.00 0.00 33.14 4.57
4132 4933 0.526662 CCAGTTCGTCGCTAGGTCTT 59.473 55.000 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.