Multiple sequence alignment - TraesCS2B01G312300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G312300 chr2B 100.000 7230 0 0 1 7230 447740075 447747304 0.000000e+00 13352
1 TraesCS2B01G312300 chr2A 94.342 4684 127 47 2285 6877 509072367 509077003 0.000000e+00 7055
2 TraesCS2B01G312300 chr2A 96.780 2112 64 3 11 2122 509070259 509072366 0.000000e+00 3520
3 TraesCS2B01G312300 chr2A 93.478 92 6 0 7054 7145 509077085 509077176 3.520000e-28 137
4 TraesCS2B01G312300 chr2A 91.398 93 8 0 7138 7230 509077437 509077529 2.120000e-25 128
5 TraesCS2B01G312300 chr2D 96.417 2093 59 6 3 2094 376317622 376319699 0.000000e+00 3435
6 TraesCS2B01G312300 chr2D 92.646 2135 81 35 4536 6612 376322779 376324895 0.000000e+00 3003
7 TraesCS2B01G312300 chr2D 94.989 1417 36 12 2285 3679 376319717 376321120 0.000000e+00 2191
8 TraesCS2B01G312300 chr2D 96.806 814 24 2 3672 4485 376321884 376322695 0.000000e+00 1358
9 TraesCS2B01G312300 chr2D 94.857 175 8 1 2121 2294 196347328 196347502 9.240000e-69 272
10 TraesCS2B01G312300 chr1B 94.944 178 7 2 2117 2292 628050855 628050678 1.990000e-70 278
11 TraesCS2B01G312300 chr1A 95.349 172 6 2 2114 2283 233421334 233421505 9.240000e-69 272
12 TraesCS2B01G312300 chr5D 94.382 178 7 3 2108 2283 274578189 274578013 3.320000e-68 270
13 TraesCS2B01G312300 chr7A 93.443 183 7 5 2104 2283 324925212 324925032 4.300000e-67 267
14 TraesCS2B01G312300 chr3D 94.286 175 9 1 2118 2291 272098431 272098605 4.300000e-67 267
15 TraesCS2B01G312300 chr6D 93.820 178 8 3 2121 2296 97856420 97856596 1.550000e-66 265
16 TraesCS2B01G312300 chr5A 95.238 168 6 2 2121 2286 382566802 382566635 1.550000e-66 265
17 TraesCS2B01G312300 chr5A 93.258 178 10 2 2114 2289 690414008 690414185 2.000000e-65 261


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G312300 chr2B 447740075 447747304 7229 False 13352.00 13352 100.0000 1 7230 1 chr2B.!!$F1 7229
1 TraesCS2B01G312300 chr2A 509070259 509077529 7270 False 2710.00 7055 93.9995 11 7230 4 chr2A.!!$F1 7219
2 TraesCS2B01G312300 chr2D 376317622 376324895 7273 False 2496.75 3435 95.2145 3 6612 4 chr2D.!!$F2 6609

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
973 975 0.166814 GATTGCTGGTGTTGAGACGC 59.833 55.000 0.00 0.00 35.53 5.19 F
1358 1360 1.544314 GCTGTCAGGACTCCAGCTTTT 60.544 52.381 1.14 0.00 46.23 2.27 F
2134 2136 2.037144 TGCTTATACTCCCTCCGTTCC 58.963 52.381 0.00 0.00 0.00 3.62 F
2135 2137 2.317973 GCTTATACTCCCTCCGTTCCT 58.682 52.381 0.00 0.00 0.00 3.36 F
3220 3243 0.469705 AACACTTGCAGCCATTCCCA 60.470 50.000 0.00 0.00 0.00 4.37 F
3340 3375 1.878734 TCATTGTGAATCAACTGCGCA 59.121 42.857 10.98 10.98 38.97 6.09 F
4332 5139 1.133699 TGCTTTCATATGGGGAGGCAG 60.134 52.381 2.13 0.00 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2269 2271 0.108019 ACAAACACTCCCTCCGTTCC 59.892 55.000 0.00 0.0 0.00 3.62 R
2574 2596 0.333993 AGGCAATTCCCATCTGCTGT 59.666 50.000 0.00 0.0 36.32 4.40 R
3167 3190 0.902531 GCCTGAGTTACTGGGTGCTA 59.097 55.000 0.00 0.0 37.94 3.49 R
3608 3644 2.113131 AAGCCACGTAGTTTGCGCAC 62.113 55.000 11.12 0.0 41.61 5.34 R
4332 5139 1.028868 GGGAGAAGTGCATGCCTCAC 61.029 60.000 16.68 11.7 34.80 3.51 R
5281 6130 1.205064 CTGCAACAAGAGCGAACCG 59.795 57.895 0.00 0.0 33.85 4.44 R
6240 7121 0.248134 CTCGGTCGCGTCTAGAAAGG 60.248 60.000 5.77 0.0 0.00 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 72 3.560896 ACATGCAGTTGTGAAAAATTGCC 59.439 39.130 0.00 0.00 40.85 4.52
82 84 2.422276 AAATTGCCGAACTTGCAGTC 57.578 45.000 0.00 0.00 40.35 3.51
94 96 1.646540 TGCAGTCGCAGAAAAACCG 59.353 52.632 0.00 0.00 45.36 4.44
95 97 1.092921 TGCAGTCGCAGAAAAACCGT 61.093 50.000 0.00 0.00 45.36 4.83
122 124 1.098869 TGAGTCGAGATCACCTGCTC 58.901 55.000 0.00 0.00 0.00 4.26
292 294 1.626825 ACACATAACCAAGGGCGTAGT 59.373 47.619 0.00 0.00 0.00 2.73
326 328 4.450082 TTCTTCACAGACGCTGCTATTA 57.550 40.909 6.74 0.00 34.37 0.98
544 546 1.157870 CCATAAACCCTAGCGCGGTG 61.158 60.000 23.02 10.84 32.55 4.94
973 975 0.166814 GATTGCTGGTGTTGAGACGC 59.833 55.000 0.00 0.00 35.53 5.19
1262 1264 1.615883 TGTGTCTGAGAGCTCAAGTCC 59.384 52.381 17.77 8.74 39.39 3.85
1306 1308 2.305927 GAGAAACCTCCCAAGGATGACA 59.694 50.000 0.00 0.00 46.67 3.58
1307 1309 2.716424 AGAAACCTCCCAAGGATGACAA 59.284 45.455 0.00 0.00 46.67 3.18
1313 1315 2.165030 CTCCCAAGGATGACAACAATGC 59.835 50.000 0.00 0.00 0.00 3.56
1358 1360 1.544314 GCTGTCAGGACTCCAGCTTTT 60.544 52.381 1.14 0.00 46.23 2.27
1680 1682 6.392625 TGTTACACCTCTAGCTATGATGAC 57.607 41.667 0.00 0.00 0.00 3.06
1736 1738 6.745907 GCGTGGACTTTAATTTTGGATCTTAC 59.254 38.462 0.00 0.00 0.00 2.34
1739 1741 6.127842 TGGACTTTAATTTTGGATCTTACGCC 60.128 38.462 0.00 0.00 0.00 5.68
1870 1872 6.483640 GCTGGGTTTAGTTAGGAGTATGAATG 59.516 42.308 0.00 0.00 0.00 2.67
1966 1968 7.568349 TCTCAATGTCTCCTGCTTATATTTGT 58.432 34.615 0.00 0.00 0.00 2.83
2029 2031 5.938125 TCATGGAGCTGTTTTTAGTTAGGAC 59.062 40.000 0.00 0.00 0.00 3.85
2125 2127 7.849804 TTTCAATGTCTCTTGCTTATACTCC 57.150 36.000 0.00 0.00 0.00 3.85
2126 2128 5.918608 TCAATGTCTCTTGCTTATACTCCC 58.081 41.667 0.00 0.00 0.00 4.30
2127 2129 5.663106 TCAATGTCTCTTGCTTATACTCCCT 59.337 40.000 0.00 0.00 0.00 4.20
2128 2130 5.799827 ATGTCTCTTGCTTATACTCCCTC 57.200 43.478 0.00 0.00 0.00 4.30
2129 2131 3.961408 TGTCTCTTGCTTATACTCCCTCC 59.039 47.826 0.00 0.00 0.00 4.30
2130 2132 3.004944 GTCTCTTGCTTATACTCCCTCCG 59.995 52.174 0.00 0.00 0.00 4.63
2131 2133 2.959707 CTCTTGCTTATACTCCCTCCGT 59.040 50.000 0.00 0.00 0.00 4.69
2132 2134 3.371965 TCTTGCTTATACTCCCTCCGTT 58.628 45.455 0.00 0.00 0.00 4.44
2133 2135 3.383825 TCTTGCTTATACTCCCTCCGTTC 59.616 47.826 0.00 0.00 0.00 3.95
2134 2136 2.037144 TGCTTATACTCCCTCCGTTCC 58.963 52.381 0.00 0.00 0.00 3.62
2135 2137 2.317973 GCTTATACTCCCTCCGTTCCT 58.682 52.381 0.00 0.00 0.00 3.36
2136 2138 3.117398 TGCTTATACTCCCTCCGTTCCTA 60.117 47.826 0.00 0.00 0.00 2.94
2137 2139 3.893813 GCTTATACTCCCTCCGTTCCTAA 59.106 47.826 0.00 0.00 0.00 2.69
2138 2140 4.343239 GCTTATACTCCCTCCGTTCCTAAA 59.657 45.833 0.00 0.00 0.00 1.85
2139 2141 5.011840 GCTTATACTCCCTCCGTTCCTAAAT 59.988 44.000 0.00 0.00 0.00 1.40
2140 2142 6.210185 GCTTATACTCCCTCCGTTCCTAAATA 59.790 42.308 0.00 0.00 0.00 1.40
2141 2143 7.093421 GCTTATACTCCCTCCGTTCCTAAATAT 60.093 40.741 0.00 0.00 0.00 1.28
2142 2144 8.731591 TTATACTCCCTCCGTTCCTAAATATT 57.268 34.615 0.00 0.00 0.00 1.28
2143 2145 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2144 2146 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2145 2147 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2146 2148 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2147 2149 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2148 2150 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2149 2151 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2150 2152 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
2151 2153 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
2152 2154 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
2153 2155 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
2154 2156 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
2178 2180 9.790389 AGAGATTTAAAGAAGTGTCTACATACG 57.210 33.333 0.00 0.00 32.16 3.06
2179 2181 8.928270 AGATTTAAAGAAGTGTCTACATACGG 57.072 34.615 0.00 0.00 32.16 4.02
2180 2182 8.746530 AGATTTAAAGAAGTGTCTACATACGGA 58.253 33.333 0.00 0.00 32.16 4.69
2181 2183 8.928270 ATTTAAAGAAGTGTCTACATACGGAG 57.072 34.615 0.00 0.00 32.16 4.63
2182 2184 4.373348 AAGAAGTGTCTACATACGGAGC 57.627 45.455 0.00 0.00 32.16 4.70
2183 2185 3.353557 AGAAGTGTCTACATACGGAGCA 58.646 45.455 0.00 0.00 29.93 4.26
2184 2186 3.762288 AGAAGTGTCTACATACGGAGCAA 59.238 43.478 0.00 0.00 29.93 3.91
2185 2187 4.219944 AGAAGTGTCTACATACGGAGCAAA 59.780 41.667 0.00 0.00 29.93 3.68
2186 2188 4.530710 AGTGTCTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
2187 2189 5.086104 AGTGTCTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
2188 2190 4.870426 AGTGTCTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
2189 2191 4.868171 GTGTCTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
2190 2192 5.005779 GTGTCTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
2191 2193 5.109903 GTCTACATACGGAGCAAAATGAGT 58.890 41.667 0.00 0.00 0.00 3.41
2192 2194 5.005779 GTCTACATACGGAGCAAAATGAGTG 59.994 44.000 0.00 0.00 0.00 3.51
2193 2195 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
2194 2196 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
2195 2197 4.759693 ACATACGGAGCAAAATGAGTGAAA 59.240 37.500 0.00 0.00 0.00 2.69
2196 2198 3.626028 ACGGAGCAAAATGAGTGAAAC 57.374 42.857 0.00 0.00 0.00 2.78
2237 2239 9.901172 TGTCTATATACATCCGTATGTGATAGT 57.099 33.333 17.08 3.55 45.99 2.12
2245 2247 8.178313 ACATCCGTATGTGATAGTCTATTTGA 57.822 34.615 0.00 0.00 44.79 2.69
2246 2248 8.638873 ACATCCGTATGTGATAGTCTATTTGAA 58.361 33.333 0.00 0.00 44.79 2.69
2247 2249 9.645059 CATCCGTATGTGATAGTCTATTTGAAT 57.355 33.333 0.00 0.00 0.00 2.57
2248 2250 9.862371 ATCCGTATGTGATAGTCTATTTGAATC 57.138 33.333 0.00 0.00 0.00 2.52
2249 2251 9.078990 TCCGTATGTGATAGTCTATTTGAATCT 57.921 33.333 0.00 0.00 0.00 2.40
2250 2252 9.347934 CCGTATGTGATAGTCTATTTGAATCTC 57.652 37.037 0.00 0.00 0.00 2.75
2278 2280 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
2279 2281 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2280 2282 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2281 2283 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2282 2284 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
2283 2285 4.957684 ATATTTAGGAACGGAGGGAGTG 57.042 45.455 0.00 0.00 0.00 3.51
2468 2490 4.292186 TCTACGTACAGGGTGAGTAAGT 57.708 45.455 0.00 0.00 37.76 2.24
2469 2491 5.420725 TCTACGTACAGGGTGAGTAAGTA 57.579 43.478 0.00 0.00 36.05 2.24
2498 2520 7.865706 ATTTTGTACTGGTCCTGATGTATTC 57.134 36.000 2.23 0.00 0.00 1.75
2574 2596 9.142014 TGAAAGGGTTTGAAATAAGAAAGATGA 57.858 29.630 0.00 0.00 0.00 2.92
2684 2706 6.202954 GTGTTGACTATATGGTAGGTTGCATC 59.797 42.308 0.00 0.00 0.00 3.91
2743 2765 8.658609 AGTTTGTGTTTTCAAGACAATCATTTG 58.341 29.630 9.13 0.00 43.11 2.32
2758 2780 2.813754 TCATTTGTTGCCAGTGAGTAGC 59.186 45.455 0.00 0.00 0.00 3.58
2759 2781 2.340210 TTTGTTGCCAGTGAGTAGCA 57.660 45.000 0.00 0.00 33.97 3.49
2776 2798 5.967088 AGTAGCATAATAGCACTTATCCCG 58.033 41.667 0.00 0.00 36.85 5.14
2888 2911 9.817809 CTTGCTAGGTTTACAATAATCTAGACA 57.182 33.333 7.63 3.44 39.97 3.41
3220 3243 0.469705 AACACTTGCAGCCATTCCCA 60.470 50.000 0.00 0.00 0.00 4.37
3238 3261 3.572255 TCCCATCAAAACTTGTTGCTACC 59.428 43.478 0.00 0.00 0.00 3.18
3246 3269 6.826741 TCAAAACTTGTTGCTACCTTACTCTT 59.173 34.615 0.00 0.00 0.00 2.85
3247 3270 7.338449 TCAAAACTTGTTGCTACCTTACTCTTT 59.662 33.333 0.00 0.00 0.00 2.52
3248 3271 7.640597 AAACTTGTTGCTACCTTACTCTTTT 57.359 32.000 0.00 0.00 0.00 2.27
3249 3272 7.640597 AACTTGTTGCTACCTTACTCTTTTT 57.359 32.000 0.00 0.00 0.00 1.94
3250 3273 7.027778 ACTTGTTGCTACCTTACTCTTTTTG 57.972 36.000 0.00 0.00 0.00 2.44
3251 3274 6.039382 ACTTGTTGCTACCTTACTCTTTTTGG 59.961 38.462 0.00 0.00 0.00 3.28
3252 3275 5.442391 TGTTGCTACCTTACTCTTTTTGGT 58.558 37.500 0.00 0.00 35.05 3.67
3253 3276 6.593807 TGTTGCTACCTTACTCTTTTTGGTA 58.406 36.000 0.00 0.00 32.74 3.25
3254 3277 7.228590 TGTTGCTACCTTACTCTTTTTGGTAT 58.771 34.615 0.00 0.00 33.48 2.73
3255 3278 7.722285 TGTTGCTACCTTACTCTTTTTGGTATT 59.278 33.333 0.00 0.00 33.48 1.89
3256 3279 8.573885 GTTGCTACCTTACTCTTTTTGGTATTT 58.426 33.333 0.00 0.00 33.48 1.40
3337 3372 5.390145 GCCAATTTCATTGTGAATCAACTGC 60.390 40.000 0.00 0.00 36.11 4.40
3340 3375 1.878734 TCATTGTGAATCAACTGCGCA 59.121 42.857 10.98 10.98 38.97 6.09
3607 3643 3.838244 TCAGTGTAAGCAGGTGAAAGT 57.162 42.857 0.00 0.00 0.00 2.66
3608 3644 3.466836 TCAGTGTAAGCAGGTGAAAGTG 58.533 45.455 0.00 0.00 0.00 3.16
3635 3671 2.614829 ACTACGTGGCTTCTTTGTGT 57.385 45.000 0.00 0.00 0.00 3.72
3721 4528 6.698329 TGTCATTTTATTAGCTTCATGCATGC 59.302 34.615 22.25 11.82 45.94 4.06
3734 4541 3.057104 TCATGCATGCAAAACAAGAGGAG 60.057 43.478 26.68 3.26 0.00 3.69
3790 4597 7.722285 GCATAGTTAACCCCATGGACTTTATAA 59.278 37.037 15.22 1.04 34.81 0.98
3791 4598 9.635404 CATAGTTAACCCCATGGACTTTATAAA 57.365 33.333 15.22 0.00 34.81 1.40
4094 4901 2.479560 GCTTGCTTAAAATGGGTAGGCG 60.480 50.000 0.00 0.00 0.00 5.52
4098 4905 4.020543 TGCTTAAAATGGGTAGGCGAATT 58.979 39.130 0.00 0.00 0.00 2.17
4139 4946 5.241403 TGTCCCTCATTTGTACAAGATGT 57.759 39.130 20.43 5.37 0.00 3.06
4146 4953 6.600822 CCTCATTTGTACAAGATGTCTTCCAT 59.399 38.462 20.43 4.30 33.11 3.41
4332 5139 1.133699 TGCTTTCATATGGGGAGGCAG 60.134 52.381 2.13 0.00 0.00 4.85
4380 5187 2.368548 TGACCTGTTCTACTGCACACAT 59.631 45.455 0.00 0.00 0.00 3.21
4464 5271 6.603997 ACCAATACGAGGCATACCAATTTTTA 59.396 34.615 0.00 0.00 39.06 1.52
4526 5345 2.282462 CAAAGCCCGCCCTCAAGT 60.282 61.111 0.00 0.00 0.00 3.16
4852 5700 8.506437 GCTCATCATAAAATTGAATCGGTATCA 58.494 33.333 0.00 0.00 0.00 2.15
4866 5714 7.867909 TGAATCGGTATCAGACTAAGCAATAAG 59.132 37.037 0.00 0.00 0.00 1.73
5188 6037 4.210120 GCTGAGATGTACAATCGTCCAATC 59.790 45.833 0.00 0.00 0.00 2.67
5241 6090 3.245087 TGGTCTAGCATTTTAACCCTGCA 60.245 43.478 6.03 0.00 38.37 4.41
5254 6103 3.525800 ACCCTGCATCTTTGTAACCTT 57.474 42.857 0.00 0.00 0.00 3.50
5281 6130 5.620206 TCTCTCACTCTCAGTCTCATATCC 58.380 45.833 0.00 0.00 0.00 2.59
5286 6135 3.886505 ACTCTCAGTCTCATATCCGGTTC 59.113 47.826 0.00 0.00 0.00 3.62
5346 6195 6.620877 AGTTATAACACAGATGTTCCTCCA 57.379 37.500 17.65 0.00 46.46 3.86
5667 6542 6.913170 TCTTACTTTCCATCAAAGCATGTTC 58.087 36.000 0.00 0.00 45.00 3.18
5904 6779 2.823829 CGCCGCAAGTAAGCATCCC 61.824 63.158 0.00 0.00 0.00 3.85
5907 6782 0.815615 CCGCAAGTAAGCATCCCTCC 60.816 60.000 0.00 0.00 0.00 4.30
6214 7095 3.948719 AGCAACCGCCGGAAAGGA 61.949 61.111 11.71 0.00 45.00 3.36
6236 7117 0.604780 GGCTGCTGAGTGATGTGTGT 60.605 55.000 0.00 0.00 0.00 3.72
6237 7118 0.516001 GCTGCTGAGTGATGTGTGTG 59.484 55.000 0.00 0.00 0.00 3.82
6239 7120 0.179051 TGCTGAGTGATGTGTGTGCA 60.179 50.000 0.00 0.00 0.00 4.57
6240 7121 0.236711 GCTGAGTGATGTGTGTGCAC 59.763 55.000 10.75 10.75 45.44 4.57
6241 7122 0.870393 CTGAGTGATGTGTGTGCACC 59.130 55.000 15.69 6.37 44.65 5.01
6250 7131 2.833794 TGTGTGTGCACCTTTCTAGAC 58.166 47.619 15.69 3.58 44.65 2.59
6256 7137 1.077089 GCACCTTTCTAGACGCGACC 61.077 60.000 15.93 3.72 0.00 4.79
6283 7164 5.278169 GGATCGAAGTTATCAGGCGTAACTA 60.278 44.000 11.48 0.90 40.49 2.24
6328 7216 3.696898 CCTCGAGTTAAGAAGACATCGG 58.303 50.000 12.31 0.00 0.00 4.18
6433 7323 3.358707 TGGTGTCTGTTGTAGTACGTG 57.641 47.619 0.00 0.00 0.00 4.49
6477 7388 0.883833 CTCCCTTGTGACCATTGTGC 59.116 55.000 0.00 0.00 0.00 4.57
6497 7408 2.480419 GCTGCTCACTTGTGATTACGTT 59.520 45.455 3.79 0.00 0.00 3.99
6518 7429 6.093082 ACGTTTGTCTAGTTTTGTTAAGCTGT 59.907 34.615 0.00 0.00 0.00 4.40
6519 7430 6.964934 CGTTTGTCTAGTTTTGTTAAGCTGTT 59.035 34.615 0.00 0.00 0.00 3.16
6520 7431 7.483691 CGTTTGTCTAGTTTTGTTAAGCTGTTT 59.516 33.333 0.00 0.00 0.00 2.83
6521 7432 8.583765 GTTTGTCTAGTTTTGTTAAGCTGTTTG 58.416 33.333 0.00 0.00 0.00 2.93
6522 7433 7.385778 TGTCTAGTTTTGTTAAGCTGTTTGT 57.614 32.000 0.00 0.00 0.00 2.83
6523 7434 7.469260 TGTCTAGTTTTGTTAAGCTGTTTGTC 58.531 34.615 0.00 0.00 0.00 3.18
6524 7435 7.335924 TGTCTAGTTTTGTTAAGCTGTTTGTCT 59.664 33.333 0.00 0.00 0.00 3.41
6525 7436 8.823818 GTCTAGTTTTGTTAAGCTGTTTGTCTA 58.176 33.333 0.00 0.00 0.00 2.59
6526 7437 9.042008 TCTAGTTTTGTTAAGCTGTTTGTCTAG 57.958 33.333 0.00 0.00 0.00 2.43
6527 7438 7.625828 AGTTTTGTTAAGCTGTTTGTCTAGT 57.374 32.000 0.00 0.00 0.00 2.57
6528 7439 8.051901 AGTTTTGTTAAGCTGTTTGTCTAGTT 57.948 30.769 0.00 0.00 0.00 2.24
6529 7440 8.520351 AGTTTTGTTAAGCTGTTTGTCTAGTTT 58.480 29.630 0.00 0.00 0.00 2.66
6530 7441 9.135843 GTTTTGTTAAGCTGTTTGTCTAGTTTT 57.864 29.630 0.00 0.00 0.00 2.43
6531 7442 8.682128 TTTGTTAAGCTGTTTGTCTAGTTTTG 57.318 30.769 0.00 0.00 0.00 2.44
6532 7443 7.385778 TGTTAAGCTGTTTGTCTAGTTTTGT 57.614 32.000 0.00 0.00 0.00 2.83
6533 7444 7.822658 TGTTAAGCTGTTTGTCTAGTTTTGTT 58.177 30.769 0.00 0.00 0.00 2.83
6534 7445 8.948145 TGTTAAGCTGTTTGTCTAGTTTTGTTA 58.052 29.630 0.00 0.00 0.00 2.41
6535 7446 9.777575 GTTAAGCTGTTTGTCTAGTTTTGTTAA 57.222 29.630 0.00 0.00 0.00 2.01
6536 7447 9.997482 TTAAGCTGTTTGTCTAGTTTTGTTAAG 57.003 29.630 0.00 0.00 0.00 1.85
6537 7448 6.495706 AGCTGTTTGTCTAGTTTTGTTAAGC 58.504 36.000 0.00 0.00 0.00 3.09
6538 7449 6.318900 AGCTGTTTGTCTAGTTTTGTTAAGCT 59.681 34.615 0.00 0.00 0.00 3.74
6539 7450 6.414987 GCTGTTTGTCTAGTTTTGTTAAGCTG 59.585 38.462 0.00 0.00 0.00 4.24
6586 7497 3.039202 GAACGAGCCATGCCCAACG 62.039 63.158 0.00 0.00 0.00 4.10
6619 7537 1.103398 AGGCGTGCTTTGAGCTGTTT 61.103 50.000 0.00 0.00 42.97 2.83
6639 7557 8.390854 CTGTTTAGCAGCTTAAAATGAATGAG 57.609 34.615 0.00 0.00 38.52 2.90
6653 7571 2.890311 TGAATGAGTCGTTTTGGGCAAT 59.110 40.909 0.00 0.00 0.00 3.56
6667 7585 6.602410 TTTGGGCAATTAGATTTCACATGA 57.398 33.333 0.00 0.00 0.00 3.07
6669 7587 6.795144 TGGGCAATTAGATTTCACATGATT 57.205 33.333 0.00 0.00 0.00 2.57
6670 7588 6.575267 TGGGCAATTAGATTTCACATGATTG 58.425 36.000 0.00 0.00 0.00 2.67
6695 7613 5.308497 TGAGATTGTAGGGTAGGAAAACACA 59.692 40.000 0.00 0.00 0.00 3.72
6710 7628 6.718454 AGGAAAACACATTCAGAATCACAGAT 59.282 34.615 0.00 0.00 0.00 2.90
6719 7637 7.879677 ACATTCAGAATCACAGATGTTTGTAGA 59.120 33.333 0.00 0.00 0.00 2.59
6726 7644 6.114187 TCACAGATGTTTGTAGAATGGACT 57.886 37.500 0.00 0.00 0.00 3.85
6733 7651 4.141597 TGTTTGTAGAATGGACTGTGTGGA 60.142 41.667 0.00 0.00 0.00 4.02
6734 7652 3.961480 TGTAGAATGGACTGTGTGGAG 57.039 47.619 0.00 0.00 0.00 3.86
6735 7653 2.028112 TGTAGAATGGACTGTGTGGAGC 60.028 50.000 0.00 0.00 0.00 4.70
6737 7655 1.421268 AGAATGGACTGTGTGGAGCAA 59.579 47.619 0.00 0.00 0.00 3.91
6738 7656 2.040813 AGAATGGACTGTGTGGAGCAAT 59.959 45.455 0.00 0.00 0.00 3.56
6739 7657 1.830279 ATGGACTGTGTGGAGCAATG 58.170 50.000 0.00 0.00 0.00 2.82
6758 7683 5.298276 GCAATGGTATTCGAATAAACCAGGA 59.702 40.000 27.96 12.71 44.78 3.86
6789 7714 3.024547 GCCAAATTAGTTCTCCCCCTTC 58.975 50.000 0.00 0.00 0.00 3.46
6812 7737 1.748493 CTCGACCCTTCTCCTCTCTTG 59.252 57.143 0.00 0.00 0.00 3.02
6864 7798 3.216292 GCCACTGGCGTTGTTGGT 61.216 61.111 3.73 0.00 39.62 3.67
6877 7811 0.608130 TGTTGGTCGGAGTGGAGATG 59.392 55.000 0.00 0.00 0.00 2.90
6878 7812 0.895530 GTTGGTCGGAGTGGAGATGA 59.104 55.000 0.00 0.00 0.00 2.92
6879 7813 0.895530 TTGGTCGGAGTGGAGATGAC 59.104 55.000 0.00 0.00 0.00 3.06
6880 7814 1.313091 TGGTCGGAGTGGAGATGACG 61.313 60.000 0.00 0.00 0.00 4.35
6882 7816 1.030488 GTCGGAGTGGAGATGACGGA 61.030 60.000 0.00 0.00 0.00 4.69
6883 7817 0.748367 TCGGAGTGGAGATGACGGAG 60.748 60.000 0.00 0.00 0.00 4.63
6884 7818 1.729470 CGGAGTGGAGATGACGGAGG 61.729 65.000 0.00 0.00 0.00 4.30
6885 7819 0.395862 GGAGTGGAGATGACGGAGGA 60.396 60.000 0.00 0.00 0.00 3.71
6886 7820 1.028905 GAGTGGAGATGACGGAGGAG 58.971 60.000 0.00 0.00 0.00 3.69
6887 7821 0.333312 AGTGGAGATGACGGAGGAGT 59.667 55.000 0.00 0.00 0.00 3.85
6888 7822 0.741915 GTGGAGATGACGGAGGAGTC 59.258 60.000 0.00 0.00 41.30 3.36
6889 7823 0.395862 TGGAGATGACGGAGGAGTCC 60.396 60.000 0.00 0.00 40.26 3.85
6897 7831 3.003763 GGAGGAGTCCGGTGCCTT 61.004 66.667 12.50 0.00 31.37 4.35
6898 7832 2.579738 GAGGAGTCCGGTGCCTTC 59.420 66.667 12.50 2.06 30.70 3.46
6899 7833 3.003763 AGGAGTCCGGTGCCTTCC 61.004 66.667 2.76 2.86 0.00 3.46
6900 7834 3.003763 GGAGTCCGGTGCCTTCCT 61.004 66.667 0.00 0.00 0.00 3.36
6901 7835 1.684734 GGAGTCCGGTGCCTTCCTA 60.685 63.158 0.00 0.00 0.00 2.94
6902 7836 1.049289 GGAGTCCGGTGCCTTCCTAT 61.049 60.000 0.00 0.00 0.00 2.57
6903 7837 0.105039 GAGTCCGGTGCCTTCCTATG 59.895 60.000 0.00 0.00 0.00 2.23
6904 7838 0.617820 AGTCCGGTGCCTTCCTATGT 60.618 55.000 0.00 0.00 0.00 2.29
6905 7839 0.252197 GTCCGGTGCCTTCCTATGTT 59.748 55.000 0.00 0.00 0.00 2.71
6906 7840 0.988832 TCCGGTGCCTTCCTATGTTT 59.011 50.000 0.00 0.00 0.00 2.83
6907 7841 1.065709 TCCGGTGCCTTCCTATGTTTC 60.066 52.381 0.00 0.00 0.00 2.78
6908 7842 1.065418 CCGGTGCCTTCCTATGTTTCT 60.065 52.381 0.00 0.00 0.00 2.52
6909 7843 2.009774 CGGTGCCTTCCTATGTTTCTG 58.990 52.381 0.00 0.00 0.00 3.02
6910 7844 2.615493 CGGTGCCTTCCTATGTTTCTGT 60.615 50.000 0.00 0.00 0.00 3.41
6911 7845 2.749621 GGTGCCTTCCTATGTTTCTGTG 59.250 50.000 0.00 0.00 0.00 3.66
6912 7846 3.412386 GTGCCTTCCTATGTTTCTGTGT 58.588 45.455 0.00 0.00 0.00 3.72
6913 7847 3.821033 GTGCCTTCCTATGTTTCTGTGTT 59.179 43.478 0.00 0.00 0.00 3.32
6914 7848 5.001232 GTGCCTTCCTATGTTTCTGTGTTA 58.999 41.667 0.00 0.00 0.00 2.41
6915 7849 5.648092 GTGCCTTCCTATGTTTCTGTGTTAT 59.352 40.000 0.00 0.00 0.00 1.89
6916 7850 6.821665 GTGCCTTCCTATGTTTCTGTGTTATA 59.178 38.462 0.00 0.00 0.00 0.98
6917 7851 6.821665 TGCCTTCCTATGTTTCTGTGTTATAC 59.178 38.462 0.00 0.00 0.00 1.47
6918 7852 6.018994 GCCTTCCTATGTTTCTGTGTTATACG 60.019 42.308 0.00 0.00 0.00 3.06
6919 7853 7.262772 CCTTCCTATGTTTCTGTGTTATACGA 58.737 38.462 0.00 0.00 0.00 3.43
6920 7854 7.435488 CCTTCCTATGTTTCTGTGTTATACGAG 59.565 40.741 0.00 0.00 0.00 4.18
6921 7855 7.400599 TCCTATGTTTCTGTGTTATACGAGT 57.599 36.000 0.00 0.00 0.00 4.18
6922 7856 8.510243 TCCTATGTTTCTGTGTTATACGAGTA 57.490 34.615 0.00 0.00 0.00 2.59
6923 7857 8.618677 TCCTATGTTTCTGTGTTATACGAGTAG 58.381 37.037 0.00 0.00 0.00 2.57
6924 7858 8.404000 CCTATGTTTCTGTGTTATACGAGTAGT 58.596 37.037 0.00 0.00 0.00 2.73
6927 7861 8.327941 TGTTTCTGTGTTATACGAGTAGTAGT 57.672 34.615 0.00 0.00 38.94 2.73
6941 7875 7.890515 ACGAGTAGTAGTTTTAGGTTTAGCTT 58.109 34.615 0.00 0.00 0.00 3.74
6942 7876 7.811713 ACGAGTAGTAGTTTTAGGTTTAGCTTG 59.188 37.037 0.00 0.00 0.00 4.01
6945 7879 8.868103 AGTAGTAGTTTTAGGTTTAGCTTGACT 58.132 33.333 0.00 0.00 0.00 3.41
6964 7898 0.827368 TTTTGGTGGTGTTTGGCCTC 59.173 50.000 3.32 0.00 0.00 4.70
6977 7911 2.399356 GGCCTCGTGCTAGTTTGGC 61.399 63.158 0.00 0.00 40.92 4.52
6995 7929 0.673644 GCGTCATGCAGTTAGGGTGT 60.674 55.000 0.00 0.00 45.45 4.16
6996 7930 1.359848 CGTCATGCAGTTAGGGTGTC 58.640 55.000 0.00 0.00 0.00 3.67
6997 7931 1.066858 CGTCATGCAGTTAGGGTGTCT 60.067 52.381 0.00 0.00 0.00 3.41
6998 7932 2.622436 GTCATGCAGTTAGGGTGTCTC 58.378 52.381 0.00 0.00 0.00 3.36
6999 7933 1.555075 TCATGCAGTTAGGGTGTCTCC 59.445 52.381 0.00 0.00 0.00 3.71
7000 7934 1.278985 CATGCAGTTAGGGTGTCTCCA 59.721 52.381 0.00 0.00 38.11 3.86
7001 7935 1.656587 TGCAGTTAGGGTGTCTCCAT 58.343 50.000 0.00 0.00 38.11 3.41
7002 7936 1.985159 TGCAGTTAGGGTGTCTCCATT 59.015 47.619 0.00 0.00 38.11 3.16
7003 7937 2.290260 TGCAGTTAGGGTGTCTCCATTG 60.290 50.000 0.00 0.00 38.11 2.82
7005 7939 2.571653 CAGTTAGGGTGTCTCCATTGGA 59.428 50.000 5.05 5.05 38.11 3.53
7013 7947 2.496341 CTCCATTGGAGCTCGCGA 59.504 61.111 19.49 9.26 43.29 5.87
7014 7948 1.591059 CTCCATTGGAGCTCGCGAG 60.591 63.158 31.37 31.37 43.29 5.03
7025 7959 3.949313 CTCGCGAGCAACCTTTAAC 57.051 52.632 25.07 0.00 0.00 2.01
7026 7960 0.093026 CTCGCGAGCAACCTTTAACG 59.907 55.000 25.07 0.00 0.00 3.18
7027 7961 1.131826 CGCGAGCAACCTTTAACGG 59.868 57.895 0.00 0.00 0.00 4.44
7028 7962 1.286354 CGCGAGCAACCTTTAACGGA 61.286 55.000 0.00 0.00 0.00 4.69
7029 7963 0.165295 GCGAGCAACCTTTAACGGAC 59.835 55.000 4.76 0.00 0.00 4.79
7030 7964 0.437295 CGAGCAACCTTTAACGGACG 59.563 55.000 4.76 0.00 0.00 4.79
7031 7965 0.165295 GAGCAACCTTTAACGGACGC 59.835 55.000 4.76 6.64 0.00 5.19
7032 7966 1.208358 GCAACCTTTAACGGACGCC 59.792 57.895 4.76 0.00 0.00 5.68
7033 7967 1.508808 GCAACCTTTAACGGACGCCA 61.509 55.000 4.76 0.00 0.00 5.69
7034 7968 1.161843 CAACCTTTAACGGACGCCAT 58.838 50.000 4.76 0.00 0.00 4.40
7035 7969 1.129811 CAACCTTTAACGGACGCCATC 59.870 52.381 4.76 0.00 0.00 3.51
7036 7970 0.322322 ACCTTTAACGGACGCCATCA 59.678 50.000 4.76 0.00 0.00 3.07
7037 7971 1.065709 ACCTTTAACGGACGCCATCAT 60.066 47.619 4.76 0.00 0.00 2.45
7038 7972 1.597663 CCTTTAACGGACGCCATCATC 59.402 52.381 0.00 0.00 0.00 2.92
7039 7973 2.276201 CTTTAACGGACGCCATCATCA 58.724 47.619 0.00 0.00 0.00 3.07
7040 7974 2.613026 TTAACGGACGCCATCATCAT 57.387 45.000 0.00 0.00 0.00 2.45
7041 7975 2.148916 TAACGGACGCCATCATCATC 57.851 50.000 0.00 0.00 0.00 2.92
7042 7976 0.465705 AACGGACGCCATCATCATCT 59.534 50.000 0.00 0.00 0.00 2.90
7043 7977 0.032678 ACGGACGCCATCATCATCTC 59.967 55.000 0.00 0.00 0.00 2.75
7044 7978 0.668706 CGGACGCCATCATCATCTCC 60.669 60.000 0.00 0.00 0.00 3.71
7045 7979 0.683973 GGACGCCATCATCATCTCCT 59.316 55.000 0.00 0.00 0.00 3.69
7046 7980 1.607509 GGACGCCATCATCATCTCCTG 60.608 57.143 0.00 0.00 0.00 3.86
7047 7981 1.069823 GACGCCATCATCATCTCCTGT 59.930 52.381 0.00 0.00 0.00 4.00
7048 7982 1.487976 ACGCCATCATCATCTCCTGTT 59.512 47.619 0.00 0.00 0.00 3.16
7049 7983 1.871676 CGCCATCATCATCTCCTGTTG 59.128 52.381 0.00 0.00 0.00 3.33
7050 7984 2.228059 GCCATCATCATCTCCTGTTGG 58.772 52.381 0.00 0.00 35.99 3.77
7051 7985 2.422519 GCCATCATCATCTCCTGTTGGT 60.423 50.000 0.00 0.00 35.55 3.67
7052 7986 3.474600 CCATCATCATCTCCTGTTGGTC 58.525 50.000 0.00 0.00 30.78 4.02
7083 8017 0.397816 AGGAATGGAGGAGGAGACGG 60.398 60.000 0.00 0.00 0.00 4.79
7111 8045 5.073428 GGCAAAGCCCTTCTATATAAGCTT 58.927 41.667 3.48 3.48 44.06 3.74
7122 8056 2.951229 TATAAGCTTGCTAAGGCCCC 57.049 50.000 9.86 0.00 37.74 5.80
7123 8057 0.179018 ATAAGCTTGCTAAGGCCCCG 60.179 55.000 9.86 0.00 37.74 5.73
7163 8365 1.931180 GGCCCCCTTTCTTCCTCCT 60.931 63.158 0.00 0.00 0.00 3.69
7193 8395 4.284550 AAAGGGGAGGCAGCGCAA 62.285 61.111 11.47 0.00 0.00 4.85
7214 8416 1.175983 TTCGGTTTGGTGTCCATGGC 61.176 55.000 6.96 2.72 31.53 4.40
7217 8419 1.460273 GGTTTGGTGTCCATGGCGTT 61.460 55.000 6.96 0.00 31.53 4.84
7218 8420 0.387565 GTTTGGTGTCCATGGCGTTT 59.612 50.000 6.96 0.00 31.53 3.60
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 5.104374 AGTGTCTTTGACGACGTTTCTTTA 58.896 37.500 0.13 0.00 36.71 1.85
18 19 3.518590 AGTGTCTTTGACGACGTTTCTT 58.481 40.909 0.13 0.00 36.71 2.52
57 59 2.863137 GCAAGTTCGGCAATTTTTCACA 59.137 40.909 0.00 0.00 0.00 3.58
58 60 2.863137 TGCAAGTTCGGCAATTTTTCAC 59.137 40.909 0.00 0.00 38.54 3.18
82 84 2.468532 AACTCAACGGTTTTTCTGCG 57.531 45.000 0.00 0.00 0.00 5.18
91 93 3.079578 TCTCGACTCATAACTCAACGGT 58.920 45.455 0.00 0.00 0.00 4.83
94 96 5.038033 GGTGATCTCGACTCATAACTCAAC 58.962 45.833 0.00 0.00 0.00 3.18
95 97 4.950475 AGGTGATCTCGACTCATAACTCAA 59.050 41.667 0.00 0.00 0.00 3.02
171 173 9.722056 CGATTTCTTTCTTTTTCTTCTTCTCAA 57.278 29.630 0.00 0.00 0.00 3.02
277 279 1.636148 AGTCACTACGCCCTTGGTTA 58.364 50.000 0.00 0.00 0.00 2.85
326 328 0.253347 AGGATGACATGTGGGACCCT 60.253 55.000 13.00 0.00 0.00 4.34
527 529 1.113788 TACACCGCGCTAGGGTTTAT 58.886 50.000 5.56 0.00 34.97 1.40
544 546 3.155167 CCGGGCTGAGGAGGGTAC 61.155 72.222 0.00 0.00 0.00 3.34
621 623 3.014623 CCAAATTTCCTAGGGTTCCGTC 58.985 50.000 9.46 0.00 0.00 4.79
711 713 3.857038 GCTATCCCCGGACGGCAA 61.857 66.667 0.73 0.00 0.00 4.52
955 957 1.568612 CGCGTCTCAACACCAGCAAT 61.569 55.000 0.00 0.00 0.00 3.56
988 990 1.359848 CTCGTCATTCCCCAGTTTCG 58.640 55.000 0.00 0.00 0.00 3.46
1262 1264 2.694628 CTCTCAGATCCCTCTTCCACAG 59.305 54.545 0.00 0.00 0.00 3.66
1306 1308 1.451387 GGGGATCGGTCGCATTGTT 60.451 57.895 15.26 0.00 38.94 2.83
1307 1309 2.189521 GGGGATCGGTCGCATTGT 59.810 61.111 15.26 0.00 38.94 2.71
1313 1315 0.462047 CAAGAAAGGGGGATCGGTCG 60.462 60.000 0.00 0.00 0.00 4.79
1358 1360 0.674581 CGCCTGCTCAAACTGATCCA 60.675 55.000 0.00 0.00 0.00 3.41
1434 1436 4.475135 GGAACTGGAGGAGGCGGC 62.475 72.222 0.00 0.00 0.00 6.53
1446 1448 2.316108 GATGGTTTTGGTGGTGGAACT 58.684 47.619 0.00 0.00 36.74 3.01
1448 1450 2.461300 TGATGGTTTTGGTGGTGGAA 57.539 45.000 0.00 0.00 0.00 3.53
1680 1682 3.634448 ACCAGACAAGAGATCATACCGAG 59.366 47.826 0.00 0.00 0.00 4.63
1785 1787 7.415095 CCAAAACATCTACGCCATTATCTTCAA 60.415 37.037 0.00 0.00 0.00 2.69
1966 1968 4.240096 GTGCGTAGAAAAGTAGCCACTAA 58.760 43.478 0.00 0.00 33.48 2.24
2122 2124 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2123 2125 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2124 2126 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2125 2127 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
2126 2128 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
2127 2129 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
2128 2130 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
2152 2154 9.790389 CGTATGTAGACACTTCTTTAAATCTCT 57.210 33.333 0.00 0.00 32.75 3.10
2153 2155 9.021863 CCGTATGTAGACACTTCTTTAAATCTC 57.978 37.037 0.00 0.00 32.75 2.75
2154 2156 8.746530 TCCGTATGTAGACACTTCTTTAAATCT 58.253 33.333 0.00 0.00 32.75 2.40
2155 2157 8.922058 TCCGTATGTAGACACTTCTTTAAATC 57.078 34.615 0.00 0.00 32.75 2.17
2156 2158 7.491696 GCTCCGTATGTAGACACTTCTTTAAAT 59.508 37.037 0.00 0.00 32.75 1.40
2157 2159 6.810182 GCTCCGTATGTAGACACTTCTTTAAA 59.190 38.462 0.00 0.00 32.75 1.52
2158 2160 6.071784 TGCTCCGTATGTAGACACTTCTTTAA 60.072 38.462 0.00 0.00 32.75 1.52
2159 2161 5.416639 TGCTCCGTATGTAGACACTTCTTTA 59.583 40.000 0.00 0.00 32.75 1.85
2160 2162 4.219944 TGCTCCGTATGTAGACACTTCTTT 59.780 41.667 0.00 0.00 32.75 2.52
2161 2163 3.762288 TGCTCCGTATGTAGACACTTCTT 59.238 43.478 0.00 0.00 32.75 2.52
2162 2164 3.353557 TGCTCCGTATGTAGACACTTCT 58.646 45.455 0.00 0.00 35.66 2.85
2163 2165 3.777465 TGCTCCGTATGTAGACACTTC 57.223 47.619 0.00 0.00 0.00 3.01
2164 2166 4.530710 TTTGCTCCGTATGTAGACACTT 57.469 40.909 0.00 0.00 0.00 3.16
2165 2167 4.530710 TTTTGCTCCGTATGTAGACACT 57.469 40.909 0.00 0.00 0.00 3.55
2166 2168 4.868171 TCATTTTGCTCCGTATGTAGACAC 59.132 41.667 0.00 0.00 0.00 3.67
2167 2169 5.079689 TCATTTTGCTCCGTATGTAGACA 57.920 39.130 0.00 0.00 0.00 3.41
2168 2170 5.005779 CACTCATTTTGCTCCGTATGTAGAC 59.994 44.000 0.00 0.00 0.00 2.59
2169 2171 5.105513 TCACTCATTTTGCTCCGTATGTAGA 60.106 40.000 0.00 0.00 0.00 2.59
2170 2172 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2171 2173 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2172 2174 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2173 2175 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2174 2176 5.003804 AGTTTCACTCATTTTGCTCCGTAT 58.996 37.500 0.00 0.00 0.00 3.06
2175 2177 4.385825 AGTTTCACTCATTTTGCTCCGTA 58.614 39.130 0.00 0.00 0.00 4.02
2176 2178 3.214328 AGTTTCACTCATTTTGCTCCGT 58.786 40.909 0.00 0.00 0.00 4.69
2177 2179 3.904136 AGTTTCACTCATTTTGCTCCG 57.096 42.857 0.00 0.00 0.00 4.63
2178 2180 5.239525 AGTGTAGTTTCACTCATTTTGCTCC 59.760 40.000 0.00 0.00 44.07 4.70
2179 2181 6.305693 AGTGTAGTTTCACTCATTTTGCTC 57.694 37.500 0.00 0.00 44.07 4.26
2211 2213 9.901172 ACTATCACATACGGATGTATATAGACA 57.099 33.333 30.73 11.02 44.82 3.41
2219 2221 9.292195 TCAAATAGACTATCACATACGGATGTA 57.708 33.333 14.23 2.61 44.82 2.29
2221 2223 9.645059 ATTCAAATAGACTATCACATACGGATG 57.355 33.333 5.94 5.94 39.16 3.51
2222 2224 9.862371 GATTCAAATAGACTATCACATACGGAT 57.138 33.333 0.00 0.00 0.00 4.18
2223 2225 9.078990 AGATTCAAATAGACTATCACATACGGA 57.921 33.333 0.00 0.00 0.00 4.69
2224 2226 9.347934 GAGATTCAAATAGACTATCACATACGG 57.652 37.037 0.00 0.00 0.00 4.02
2252 2254 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
2253 2255 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
2254 2256 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2255 2257 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2256 2258 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2257 2259 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2258 2260 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2259 2261 5.527582 CACTCCCTCCGTTCCTAAATATTTG 59.472 44.000 11.05 1.40 0.00 2.32
2260 2262 5.191124 ACACTCCCTCCGTTCCTAAATATTT 59.809 40.000 5.89 5.89 0.00 1.40
2261 2263 4.720273 ACACTCCCTCCGTTCCTAAATATT 59.280 41.667 0.00 0.00 0.00 1.28
2262 2264 4.296056 ACACTCCCTCCGTTCCTAAATAT 58.704 43.478 0.00 0.00 0.00 1.28
2263 2265 3.716431 ACACTCCCTCCGTTCCTAAATA 58.284 45.455 0.00 0.00 0.00 1.40
2264 2266 2.547990 ACACTCCCTCCGTTCCTAAAT 58.452 47.619 0.00 0.00 0.00 1.40
2265 2267 2.019807 ACACTCCCTCCGTTCCTAAA 57.980 50.000 0.00 0.00 0.00 1.85
2266 2268 2.019807 AACACTCCCTCCGTTCCTAA 57.980 50.000 0.00 0.00 0.00 2.69
2267 2269 1.621814 CAAACACTCCCTCCGTTCCTA 59.378 52.381 0.00 0.00 0.00 2.94
2268 2270 0.396811 CAAACACTCCCTCCGTTCCT 59.603 55.000 0.00 0.00 0.00 3.36
2269 2271 0.108019 ACAAACACTCCCTCCGTTCC 59.892 55.000 0.00 0.00 0.00 3.62
2270 2272 1.963172 AACAAACACTCCCTCCGTTC 58.037 50.000 0.00 0.00 0.00 3.95
2271 2273 2.436911 ACTAACAAACACTCCCTCCGTT 59.563 45.455 0.00 0.00 0.00 4.44
2272 2274 2.044758 ACTAACAAACACTCCCTCCGT 58.955 47.619 0.00 0.00 0.00 4.69
2273 2275 2.413837 CACTAACAAACACTCCCTCCG 58.586 52.381 0.00 0.00 0.00 4.63
2274 2276 2.779506 CCACTAACAAACACTCCCTCC 58.220 52.381 0.00 0.00 0.00 4.30
2275 2277 2.152016 GCCACTAACAAACACTCCCTC 58.848 52.381 0.00 0.00 0.00 4.30
2276 2278 1.774856 AGCCACTAACAAACACTCCCT 59.225 47.619 0.00 0.00 0.00 4.20
2277 2279 1.880027 CAGCCACTAACAAACACTCCC 59.120 52.381 0.00 0.00 0.00 4.30
2278 2280 2.572290 ACAGCCACTAACAAACACTCC 58.428 47.619 0.00 0.00 0.00 3.85
2279 2281 4.632538 AAACAGCCACTAACAAACACTC 57.367 40.909 0.00 0.00 0.00 3.51
2280 2282 4.743493 CAAAACAGCCACTAACAAACACT 58.257 39.130 0.00 0.00 0.00 3.55
2281 2283 3.305897 GCAAAACAGCCACTAACAAACAC 59.694 43.478 0.00 0.00 0.00 3.32
2282 2284 3.194542 AGCAAAACAGCCACTAACAAACA 59.805 39.130 0.00 0.00 34.23 2.83
2283 2285 3.780902 AGCAAAACAGCCACTAACAAAC 58.219 40.909 0.00 0.00 34.23 2.93
2363 2365 7.031372 TCAGAATAAGCAATCAAAGCAATCAC 58.969 34.615 0.00 0.00 0.00 3.06
2574 2596 0.333993 AGGCAATTCCCATCTGCTGT 59.666 50.000 0.00 0.00 36.32 4.40
2743 2765 4.212214 GCTATTATGCTACTCACTGGCAAC 59.788 45.833 0.00 0.00 39.46 4.17
2758 2780 5.784177 AGTGTCGGGATAAGTGCTATTATG 58.216 41.667 0.00 0.00 0.00 1.90
2759 2781 6.420913 AAGTGTCGGGATAAGTGCTATTAT 57.579 37.500 0.00 0.00 0.00 1.28
2807 2829 8.930846 ATGCTAAAATAATGAATAGCCAGAGT 57.069 30.769 0.00 0.00 39.96 3.24
2902 2925 5.280945 ACAACACACATTTTAGCACATGTC 58.719 37.500 0.00 0.00 30.90 3.06
2906 2929 5.473931 ACAAACAACACACATTTTAGCACA 58.526 33.333 0.00 0.00 0.00 4.57
2951 2974 4.575645 CGGTTTACCCTTGTAACTTTCACA 59.424 41.667 0.00 0.00 36.69 3.58
2952 2975 4.023792 CCGGTTTACCCTTGTAACTTTCAC 60.024 45.833 0.00 0.00 36.69 3.18
3013 3036 3.559242 ACGTCTAGGTAGCATCTACGTTC 59.441 47.826 0.00 0.00 0.00 3.95
3167 3190 0.902531 GCCTGAGTTACTGGGTGCTA 59.097 55.000 0.00 0.00 37.94 3.49
3220 3243 6.998673 AGAGTAAGGTAGCAACAAGTTTTGAT 59.001 34.615 0.00 0.00 0.00 2.57
3337 3372 6.151004 TGCCATACATTGATATTCAATTGCG 58.849 36.000 0.00 0.00 44.03 4.85
3607 3643 2.887889 GCCACGTAGTTTGCGCACA 61.888 57.895 11.12 0.00 41.61 4.57
3608 3644 2.113131 AAGCCACGTAGTTTGCGCAC 62.113 55.000 11.12 0.00 41.61 5.34
3635 3671 6.846988 TCCATGTATTATGCTATGTCCCAAA 58.153 36.000 0.00 0.00 0.00 3.28
3747 4554 7.448748 AACTATGCCGATAACTCAAAAGTTT 57.551 32.000 0.00 0.00 43.28 2.66
3791 4598 9.297037 GCCCTTATTAATGACCTACATAAATGT 57.703 33.333 0.00 0.63 44.48 2.71
4098 4905 9.391006 GAGGGACAAACAAATATGTGAGTAATA 57.609 33.333 0.00 0.00 40.46 0.98
4139 4946 6.322201 GGAAAAGGCATTCTAATCATGGAAGA 59.678 38.462 0.00 0.00 28.83 2.87
4146 4953 7.479352 TCAATTGGAAAAGGCATTCTAATCA 57.521 32.000 5.42 3.74 38.91 2.57
4293 5100 9.674068 TGAAAGCACATATACTACCAAATACAA 57.326 29.630 0.00 0.00 0.00 2.41
4332 5139 1.028868 GGGAGAAGTGCATGCCTCAC 61.029 60.000 16.68 11.70 34.80 3.51
4464 5271 1.750778 CAAATCTTACGGGCAAGCCAT 59.249 47.619 13.87 2.82 37.98 4.40
4526 5345 3.718815 GTTGGCAAAAATTACACGGGAA 58.281 40.909 0.00 0.00 0.00 3.97
4588 5431 2.362120 GTGAGCTGGGCTGCCAAT 60.362 61.111 22.05 2.14 39.88 3.16
4704 5547 1.787847 GGTCGCAGATGAAACGTGG 59.212 57.895 0.00 0.00 40.67 4.94
4866 5714 8.837059 CGCAAATACTTTGACAACTTGTATTAC 58.163 33.333 15.07 11.61 43.26 1.89
4916 5764 2.734755 TTATAGCCATTGCACCTGCT 57.265 45.000 8.00 8.00 42.66 4.24
5241 6090 6.439058 AGTGAGAGAGCTAAGGTTACAAAGAT 59.561 38.462 0.00 0.00 0.00 2.40
5254 6103 3.517500 TGAGACTGAGAGTGAGAGAGCTA 59.482 47.826 0.00 0.00 0.00 3.32
5281 6130 1.205064 CTGCAACAAGAGCGAACCG 59.795 57.895 0.00 0.00 33.85 4.44
5346 6195 5.727434 CCGTGATGGTAACTTAACCTAACT 58.273 41.667 0.00 0.00 40.44 2.24
5667 6542 7.359262 TGATGATTTGACCTGTTTACTTACG 57.641 36.000 0.00 0.00 0.00 3.18
5883 6758 2.036764 GATGCTTACTTGCGGCGGAC 62.037 60.000 9.78 0.00 35.36 4.79
5904 6779 2.543777 TTCCTCAAACGACAAGGGAG 57.456 50.000 0.00 0.00 0.00 4.30
5907 6782 7.962918 CACTATAAATTTCCTCAAACGACAAGG 59.037 37.037 0.00 0.00 0.00 3.61
6022 6903 3.581755 TGGGAGTACGAAACAATTCTCG 58.418 45.455 0.00 0.74 40.87 4.04
6080 6961 2.689983 GCATGTAGCTAAAGCCCATTGT 59.310 45.455 0.00 0.00 43.38 2.71
6214 7095 1.202855 ACACATCACTCAGCAGCCTTT 60.203 47.619 0.00 0.00 0.00 3.11
6236 7117 0.388134 GTCGCGTCTAGAAAGGTGCA 60.388 55.000 5.77 0.00 0.00 4.57
6237 7118 1.077089 GGTCGCGTCTAGAAAGGTGC 61.077 60.000 5.77 0.00 0.00 5.01
6239 7120 0.957395 TCGGTCGCGTCTAGAAAGGT 60.957 55.000 5.77 0.00 0.00 3.50
6240 7121 0.248134 CTCGGTCGCGTCTAGAAAGG 60.248 60.000 5.77 0.00 0.00 3.11
6241 7122 0.248134 CCTCGGTCGCGTCTAGAAAG 60.248 60.000 5.77 0.00 0.00 2.62
6250 7131 2.352457 CTTCGATCCTCGGTCGCG 60.352 66.667 0.00 0.00 40.88 5.87
6256 7137 2.667137 GCCTGATAACTTCGATCCTCG 58.333 52.381 0.00 0.00 42.10 4.63
6283 7164 6.929606 GGCTATCGTTATTTTGTACTCCTGAT 59.070 38.462 0.00 0.00 0.00 2.90
6328 7216 0.528249 CCAACAAGGCAGCACAACAC 60.528 55.000 0.00 0.00 0.00 3.32
6433 7323 4.023365 AGCTTGACTCAACAGATCAAAAGC 60.023 41.667 0.00 0.00 32.19 3.51
6477 7388 4.024893 ACAAACGTAATCACAAGTGAGCAG 60.025 41.667 8.99 3.29 43.61 4.24
6497 7408 7.822658 ACAAACAGCTTAACAAAACTAGACAA 58.177 30.769 0.00 0.00 0.00 3.18
6518 7429 6.127869 TGCACAGCTTAACAAAACTAGACAAA 60.128 34.615 0.00 0.00 0.00 2.83
6519 7430 5.355630 TGCACAGCTTAACAAAACTAGACAA 59.644 36.000 0.00 0.00 0.00 3.18
6520 7431 4.878971 TGCACAGCTTAACAAAACTAGACA 59.121 37.500 0.00 0.00 0.00 3.41
6521 7432 5.418310 TGCACAGCTTAACAAAACTAGAC 57.582 39.130 0.00 0.00 0.00 2.59
6522 7433 5.355630 TGTTGCACAGCTTAACAAAACTAGA 59.644 36.000 0.00 0.00 31.95 2.43
6523 7434 5.577835 TGTTGCACAGCTTAACAAAACTAG 58.422 37.500 0.00 0.00 31.95 2.57
6524 7435 5.568685 TGTTGCACAGCTTAACAAAACTA 57.431 34.783 0.00 0.00 31.95 2.24
6525 7436 4.448537 TGTTGCACAGCTTAACAAAACT 57.551 36.364 0.00 0.00 31.95 2.66
6526 7437 4.566360 ACATGTTGCACAGCTTAACAAAAC 59.434 37.500 0.00 0.00 37.78 2.43
6527 7438 4.753233 ACATGTTGCACAGCTTAACAAAA 58.247 34.783 0.00 0.00 37.78 2.44
6528 7439 4.097741 AGACATGTTGCACAGCTTAACAAA 59.902 37.500 0.00 0.00 37.78 2.83
6529 7440 3.631686 AGACATGTTGCACAGCTTAACAA 59.368 39.130 0.00 0.00 37.78 2.83
6530 7441 3.213506 AGACATGTTGCACAGCTTAACA 58.786 40.909 0.00 5.42 38.52 2.41
6531 7442 3.499918 AGAGACATGTTGCACAGCTTAAC 59.500 43.478 0.00 0.00 0.00 2.01
6532 7443 3.743521 AGAGACATGTTGCACAGCTTAA 58.256 40.909 0.00 0.00 0.00 1.85
6533 7444 3.244181 TGAGAGACATGTTGCACAGCTTA 60.244 43.478 0.00 0.00 0.00 3.09
6534 7445 2.149578 GAGAGACATGTTGCACAGCTT 58.850 47.619 0.00 0.00 0.00 3.74
6535 7446 1.071228 TGAGAGACATGTTGCACAGCT 59.929 47.619 0.00 0.00 0.00 4.24
6536 7447 1.463831 CTGAGAGACATGTTGCACAGC 59.536 52.381 0.00 0.00 0.00 4.40
6537 7448 2.479275 CACTGAGAGACATGTTGCACAG 59.521 50.000 18.03 18.03 0.00 3.66
6538 7449 2.486918 CACTGAGAGACATGTTGCACA 58.513 47.619 0.00 0.00 0.00 4.57
6539 7450 1.196354 GCACTGAGAGACATGTTGCAC 59.804 52.381 10.72 1.45 0.00 4.57
6586 7497 1.135859 CACGCCTCATTCTGTCAAAGC 60.136 52.381 0.00 0.00 0.00 3.51
6619 7537 5.874810 ACGACTCATTCATTTTAAGCTGCTA 59.125 36.000 0.90 0.00 0.00 3.49
6636 7554 3.745799 TCTAATTGCCCAAAACGACTCA 58.254 40.909 0.00 0.00 0.00 3.41
6639 7557 5.344933 GTGAAATCTAATTGCCCAAAACGAC 59.655 40.000 0.00 0.00 0.00 4.34
6667 7585 6.636454 TTTCCTACCCTACAATCTCACAAT 57.364 37.500 0.00 0.00 0.00 2.71
6669 7587 5.308497 TGTTTTCCTACCCTACAATCTCACA 59.692 40.000 0.00 0.00 0.00 3.58
6670 7588 5.642491 GTGTTTTCCTACCCTACAATCTCAC 59.358 44.000 0.00 0.00 0.00 3.51
6678 7596 5.801380 TCTGAATGTGTTTTCCTACCCTAC 58.199 41.667 0.00 0.00 0.00 3.18
6695 7613 8.853077 TTCTACAAACATCTGTGATTCTGAAT 57.147 30.769 1.81 1.81 0.00 2.57
6710 7628 4.133820 CCACACAGTCCATTCTACAAACA 58.866 43.478 0.00 0.00 0.00 2.83
6719 7637 2.165167 CATTGCTCCACACAGTCCATT 58.835 47.619 0.00 0.00 0.00 3.16
6726 7644 2.027653 TCGAATACCATTGCTCCACACA 60.028 45.455 0.00 0.00 0.00 3.72
6733 7651 5.299279 CCTGGTTTATTCGAATACCATTGCT 59.701 40.000 25.74 0.83 39.74 3.91
6734 7652 5.298276 TCCTGGTTTATTCGAATACCATTGC 59.702 40.000 25.74 10.57 39.74 3.56
6735 7653 6.238648 GGTCCTGGTTTATTCGAATACCATTG 60.239 42.308 25.74 20.61 39.74 2.82
6737 7655 5.374071 GGTCCTGGTTTATTCGAATACCAT 58.626 41.667 25.74 3.59 39.74 3.55
6738 7656 4.681244 CGGTCCTGGTTTATTCGAATACCA 60.681 45.833 24.56 24.56 38.29 3.25
6739 7657 3.805971 CGGTCCTGGTTTATTCGAATACC 59.194 47.826 17.33 18.37 0.00 2.73
6758 7683 1.564348 ACTAATTTGGCCAGGATCGGT 59.436 47.619 5.11 4.62 0.00 4.69
6767 7692 1.288037 AGGGGGAGAACTAATTTGGCC 59.712 52.381 0.00 0.00 0.00 5.36
6768 7693 2.828661 AGGGGGAGAACTAATTTGGC 57.171 50.000 0.00 0.00 0.00 4.52
6789 7714 0.257616 AGAGGAGAAGGGTCGAGAGG 59.742 60.000 0.00 0.00 0.00 3.69
6812 7737 1.216710 CCCGAGCACTCTCAAGGAC 59.783 63.158 0.00 0.00 39.30 3.85
6852 7786 2.280524 CTCCGACCAACAACGCCA 60.281 61.111 0.00 0.00 0.00 5.69
6855 7789 0.944311 CTCCACTCCGACCAACAACG 60.944 60.000 0.00 0.00 0.00 4.10
6860 7794 0.895530 GTCATCTCCACTCCGACCAA 59.104 55.000 0.00 0.00 0.00 3.67
6864 7798 0.748367 CTCCGTCATCTCCACTCCGA 60.748 60.000 0.00 0.00 0.00 4.55
6880 7814 3.003763 AAGGCACCGGACTCCTCC 61.004 66.667 9.46 0.00 0.00 4.30
6882 7816 2.164332 TAGGAAGGCACCGGACTCCT 62.164 60.000 9.46 13.57 34.99 3.69
6883 7817 1.049289 ATAGGAAGGCACCGGACTCC 61.049 60.000 9.46 5.79 34.73 3.85
6884 7818 0.105039 CATAGGAAGGCACCGGACTC 59.895 60.000 9.46 0.00 34.73 3.36
6885 7819 0.617820 ACATAGGAAGGCACCGGACT 60.618 55.000 9.46 0.00 34.73 3.85
6886 7820 0.252197 AACATAGGAAGGCACCGGAC 59.748 55.000 9.46 0.00 34.73 4.79
6887 7821 0.988832 AAACATAGGAAGGCACCGGA 59.011 50.000 9.46 0.00 34.73 5.14
6888 7822 1.065418 AGAAACATAGGAAGGCACCGG 60.065 52.381 0.00 0.00 34.73 5.28
6889 7823 2.009774 CAGAAACATAGGAAGGCACCG 58.990 52.381 0.00 0.00 34.73 4.94
6890 7824 2.749621 CACAGAAACATAGGAAGGCACC 59.250 50.000 0.00 0.00 0.00 5.01
6891 7825 3.412386 ACACAGAAACATAGGAAGGCAC 58.588 45.455 0.00 0.00 0.00 5.01
6892 7826 3.788227 ACACAGAAACATAGGAAGGCA 57.212 42.857 0.00 0.00 0.00 4.75
6893 7827 6.018994 CGTATAACACAGAAACATAGGAAGGC 60.019 42.308 0.00 0.00 0.00 4.35
6894 7828 7.262772 TCGTATAACACAGAAACATAGGAAGG 58.737 38.462 0.00 0.00 0.00 3.46
6895 7829 7.974501 ACTCGTATAACACAGAAACATAGGAAG 59.025 37.037 0.00 0.00 0.00 3.46
6896 7830 7.833786 ACTCGTATAACACAGAAACATAGGAA 58.166 34.615 0.00 0.00 0.00 3.36
6897 7831 7.400599 ACTCGTATAACACAGAAACATAGGA 57.599 36.000 0.00 0.00 0.00 2.94
6898 7832 8.404000 ACTACTCGTATAACACAGAAACATAGG 58.596 37.037 0.00 0.00 0.00 2.57
6901 7835 8.954350 ACTACTACTCGTATAACACAGAAACAT 58.046 33.333 0.00 0.00 0.00 2.71
6902 7836 8.327941 ACTACTACTCGTATAACACAGAAACA 57.672 34.615 0.00 0.00 0.00 2.83
6903 7837 9.617975 AAACTACTACTCGTATAACACAGAAAC 57.382 33.333 0.00 0.00 0.00 2.78
6907 7841 9.713740 CCTAAAACTACTACTCGTATAACACAG 57.286 37.037 0.00 0.00 0.00 3.66
6908 7842 9.231297 ACCTAAAACTACTACTCGTATAACACA 57.769 33.333 0.00 0.00 0.00 3.72
6914 7848 9.183368 AGCTAAACCTAAAACTACTACTCGTAT 57.817 33.333 0.00 0.00 0.00 3.06
6915 7849 8.567285 AGCTAAACCTAAAACTACTACTCGTA 57.433 34.615 0.00 0.00 0.00 3.43
6916 7850 7.459795 AGCTAAACCTAAAACTACTACTCGT 57.540 36.000 0.00 0.00 0.00 4.18
6917 7851 8.025445 TCAAGCTAAACCTAAAACTACTACTCG 58.975 37.037 0.00 0.00 0.00 4.18
6918 7852 9.138062 GTCAAGCTAAACCTAAAACTACTACTC 57.862 37.037 0.00 0.00 0.00 2.59
6919 7853 8.868103 AGTCAAGCTAAACCTAAAACTACTACT 58.132 33.333 0.00 0.00 0.00 2.57
6920 7854 9.486497 AAGTCAAGCTAAACCTAAAACTACTAC 57.514 33.333 0.00 0.00 0.00 2.73
6922 7856 8.975663 AAAGTCAAGCTAAACCTAAAACTACT 57.024 30.769 0.00 0.00 0.00 2.57
6923 7857 9.447040 CAAAAGTCAAGCTAAACCTAAAACTAC 57.553 33.333 0.00 0.00 0.00 2.73
6924 7858 8.626526 CCAAAAGTCAAGCTAAACCTAAAACTA 58.373 33.333 0.00 0.00 0.00 2.24
6925 7859 7.123697 ACCAAAAGTCAAGCTAAACCTAAAACT 59.876 33.333 0.00 0.00 0.00 2.66
6926 7860 7.222031 CACCAAAAGTCAAGCTAAACCTAAAAC 59.778 37.037 0.00 0.00 0.00 2.43
6927 7861 7.262048 CACCAAAAGTCAAGCTAAACCTAAAA 58.738 34.615 0.00 0.00 0.00 1.52
6941 7875 1.205893 GCCAAACACCACCAAAAGTCA 59.794 47.619 0.00 0.00 0.00 3.41
6942 7876 1.472552 GGCCAAACACCACCAAAAGTC 60.473 52.381 0.00 0.00 0.00 3.01
6945 7879 0.827368 GAGGCCAAACACCACCAAAA 59.173 50.000 5.01 0.00 0.00 2.44
6964 7898 0.095245 CATGACGCCAAACTAGCACG 59.905 55.000 0.00 0.00 0.00 5.34
6977 7911 1.066858 AGACACCCTAACTGCATGACG 60.067 52.381 0.00 0.00 0.00 4.35
6997 7931 2.496341 CTCGCGAGCTCCAATGGA 59.504 61.111 25.07 0.48 0.00 3.41
7007 7941 0.093026 CGTTAAAGGTTGCTCGCGAG 59.907 55.000 31.37 31.37 0.00 5.03
7008 7942 1.286354 CCGTTAAAGGTTGCTCGCGA 61.286 55.000 9.26 9.26 0.00 5.87
7009 7943 1.131826 CCGTTAAAGGTTGCTCGCG 59.868 57.895 0.00 0.00 0.00 5.87
7010 7944 0.165295 GTCCGTTAAAGGTTGCTCGC 59.835 55.000 7.34 0.00 0.00 5.03
7011 7945 0.437295 CGTCCGTTAAAGGTTGCTCG 59.563 55.000 7.34 3.20 0.00 5.03
7012 7946 0.165295 GCGTCCGTTAAAGGTTGCTC 59.835 55.000 15.29 0.00 32.58 4.26
7013 7947 1.232621 GGCGTCCGTTAAAGGTTGCT 61.233 55.000 19.37 0.00 34.57 3.91
7014 7948 1.208358 GGCGTCCGTTAAAGGTTGC 59.792 57.895 14.59 14.59 33.82 4.17
7015 7949 1.129811 GATGGCGTCCGTTAAAGGTTG 59.870 52.381 7.34 2.76 0.00 3.77
7016 7950 1.270947 TGATGGCGTCCGTTAAAGGTT 60.271 47.619 7.34 0.00 0.00 3.50
7017 7951 0.322322 TGATGGCGTCCGTTAAAGGT 59.678 50.000 7.34 0.00 0.00 3.50
7018 7952 1.597663 GATGATGGCGTCCGTTAAAGG 59.402 52.381 3.88 0.26 0.00 3.11
7019 7953 2.276201 TGATGATGGCGTCCGTTAAAG 58.724 47.619 3.88 0.00 0.00 1.85
7020 7954 2.388310 TGATGATGGCGTCCGTTAAA 57.612 45.000 3.88 0.00 0.00 1.52
7021 7955 2.102420 AGATGATGATGGCGTCCGTTAA 59.898 45.455 3.88 0.00 0.00 2.01
7022 7956 1.686587 AGATGATGATGGCGTCCGTTA 59.313 47.619 3.88 0.00 0.00 3.18
7023 7957 0.465705 AGATGATGATGGCGTCCGTT 59.534 50.000 3.88 0.00 0.00 4.44
7024 7958 0.032678 GAGATGATGATGGCGTCCGT 59.967 55.000 3.88 0.00 0.00 4.69
7025 7959 0.668706 GGAGATGATGATGGCGTCCG 60.669 60.000 3.88 0.00 0.00 4.79
7026 7960 0.683973 AGGAGATGATGATGGCGTCC 59.316 55.000 3.88 0.00 0.00 4.79
7027 7961 1.069823 ACAGGAGATGATGATGGCGTC 59.930 52.381 0.00 0.00 0.00 5.19
7028 7962 1.126488 ACAGGAGATGATGATGGCGT 58.874 50.000 0.00 0.00 0.00 5.68
7029 7963 1.871676 CAACAGGAGATGATGATGGCG 59.128 52.381 0.00 0.00 33.68 5.69
7030 7964 2.228059 CCAACAGGAGATGATGATGGC 58.772 52.381 0.00 0.00 33.68 4.40
7031 7965 3.474600 GACCAACAGGAGATGATGATGG 58.525 50.000 0.52 0.52 33.68 3.51
7032 7966 3.136077 AGGACCAACAGGAGATGATGATG 59.864 47.826 0.00 0.00 33.68 3.07
7033 7967 3.390639 GAGGACCAACAGGAGATGATGAT 59.609 47.826 0.00 0.00 33.68 2.45
7034 7968 2.768527 GAGGACCAACAGGAGATGATGA 59.231 50.000 0.00 0.00 33.68 2.92
7035 7969 2.158842 GGAGGACCAACAGGAGATGATG 60.159 54.545 0.00 0.00 35.97 3.07
7036 7970 2.122768 GGAGGACCAACAGGAGATGAT 58.877 52.381 0.00 0.00 35.97 2.45
7037 7971 1.203300 TGGAGGACCAACAGGAGATGA 60.203 52.381 0.00 0.00 43.91 2.92
7038 7972 1.279496 TGGAGGACCAACAGGAGATG 58.721 55.000 0.00 0.00 43.91 2.90
7039 7973 3.815717 TGGAGGACCAACAGGAGAT 57.184 52.632 0.00 0.00 43.91 2.75
7103 8037 1.071699 CGGGGCCTTAGCAAGCTTATA 59.928 52.381 0.84 0.00 42.56 0.98
7122 8056 3.734834 TTCGCATCGTCTCGCCTCG 62.735 63.158 0.00 0.00 0.00 4.63
7123 8057 1.941734 CTTCGCATCGTCTCGCCTC 60.942 63.158 0.00 0.00 0.00 4.70
7127 8061 2.956964 GCCCTTCGCATCGTCTCG 60.957 66.667 0.00 0.00 37.47 4.04
7145 8079 1.931180 AGGAGGAAGAAAGGGGGCC 60.931 63.158 0.00 0.00 0.00 5.80
7146 8080 1.208165 TCAGGAGGAAGAAAGGGGGC 61.208 60.000 0.00 0.00 0.00 5.80
7150 8084 2.307098 ACATGGTCAGGAGGAAGAAAGG 59.693 50.000 0.00 0.00 0.00 3.11
7193 8395 1.604604 CATGGACACCAAACCGAAGT 58.395 50.000 0.00 0.00 36.95 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.