Multiple sequence alignment - TraesCS2B01G311900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G311900 chr2B 100.000 5586 0 0 1 5586 446079294 446084879 0.000000e+00 10316.0
1 TraesCS2B01G311900 chr2A 91.722 4953 249 66 413 5295 508029799 508034660 0.000000e+00 6726.0
2 TraesCS2B01G311900 chr2A 92.727 275 14 2 63 332 508023265 508023538 5.250000e-105 392.0
3 TraesCS2B01G311900 chr2A 100.000 28 0 0 5459 5486 508034664 508034691 1.000000e-02 52.8
4 TraesCS2B01G311900 chr2D 93.357 3643 137 38 1734 5327 375593446 375597032 0.000000e+00 5289.0
5 TraesCS2B01G311900 chr2D 91.702 1663 69 21 65 1707 375591837 375593450 0.000000e+00 2242.0
6 TraesCS2B01G311900 chr2D 86.928 153 16 2 5312 5460 161272891 161273043 9.620000e-38 169.0
7 TraesCS2B01G311900 chr4D 79.885 870 157 13 2176 3033 502709638 502710501 6.150000e-174 621.0
8 TraesCS2B01G311900 chr4D 75.269 558 112 22 2173 2720 40396653 40397194 5.590000e-60 243.0
9 TraesCS2B01G311900 chr4D 86.503 163 19 1 5302 5461 416432035 416431873 5.750000e-40 176.0
10 TraesCS2B01G311900 chr5A 79.608 868 163 7 2176 3033 687150126 687150989 1.330000e-170 610.0
11 TraesCS2B01G311900 chr5A 79.626 908 136 28 2414 3296 533974432 533973549 1.720000e-169 606.0
12 TraesCS2B01G311900 chr5A 80.469 768 110 25 3834 4591 533967394 533966657 8.180000e-153 551.0
13 TraesCS2B01G311900 chr5A 82.553 470 74 7 3834 4298 535117341 535116875 1.870000e-109 407.0
14 TraesCS2B01G311900 chr5A 86.164 159 18 2 5312 5466 82249657 82249499 9.620000e-38 169.0
15 TraesCS2B01G311900 chr5B 77.669 712 136 18 3834 4541 507870786 507870094 4.030000e-111 412.0
16 TraesCS2B01G311900 chr5B 87.097 155 17 1 5312 5463 111909704 111909858 7.440000e-39 172.0
17 TraesCS2B01G311900 chr5B 85.455 165 21 1 5301 5462 44652032 44651868 9.620000e-38 169.0
18 TraesCS2B01G311900 chr4B 76.407 551 106 20 2173 2714 58926095 58926630 5.510000e-70 276.0
19 TraesCS2B01G311900 chr4A 75.719 556 113 15 2173 2720 559495989 559495448 5.550000e-65 259.0
20 TraesCS2B01G311900 chr7D 85.366 164 21 1 5300 5460 62978169 62978006 3.460000e-37 167.0
21 TraesCS2B01G311900 chr6D 85.455 165 17 5 5301 5460 25764483 25764321 1.240000e-36 165.0
22 TraesCS2B01G311900 chr3B 86.364 154 17 2 5311 5460 326138724 326138571 1.240000e-36 165.0
23 TraesCS2B01G311900 chr3B 88.350 103 8 4 5484 5586 555200193 555200095 2.730000e-23 121.0
24 TraesCS2B01G311900 chr1D 84.615 169 22 2 5302 5466 298744103 298743935 1.240000e-36 165.0
25 TraesCS2B01G311900 chr6B 97.561 82 2 0 5505 5586 133401006 133401087 2.100000e-29 141.0
26 TraesCS2B01G311900 chr6B 97.500 80 2 0 5507 5586 246420580 246420659 2.710000e-28 137.0
27 TraesCS2B01G311900 chr6B 97.500 80 2 0 5507 5586 246564267 246564346 2.710000e-28 137.0
28 TraesCS2B01G311900 chr6B 97.468 79 2 0 5508 5586 318417544 318417622 9.760000e-28 135.0
29 TraesCS2B01G311900 chr6B 95.238 84 3 1 5503 5586 524176361 524176279 1.260000e-26 132.0
30 TraesCS2B01G311900 chr6B 90.722 97 5 2 5490 5586 67969177 67969269 5.870000e-25 126.0
31 TraesCS2B01G311900 chrUn 97.500 80 2 0 5507 5586 155319843 155319922 2.710000e-28 137.0
32 TraesCS2B01G311900 chr6A 89.796 98 8 2 5490 5586 613786382 613786286 2.110000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G311900 chr2B 446079294 446084879 5585 False 10316.0 10316 100.0000 1 5586 1 chr2B.!!$F1 5585
1 TraesCS2B01G311900 chr2A 508029799 508034691 4892 False 3389.4 6726 95.8610 413 5486 2 chr2A.!!$F2 5073
2 TraesCS2B01G311900 chr2D 375591837 375597032 5195 False 3765.5 5289 92.5295 65 5327 2 chr2D.!!$F2 5262
3 TraesCS2B01G311900 chr4D 502709638 502710501 863 False 621.0 621 79.8850 2176 3033 1 chr4D.!!$F2 857
4 TraesCS2B01G311900 chr4D 40396653 40397194 541 False 243.0 243 75.2690 2173 2720 1 chr4D.!!$F1 547
5 TraesCS2B01G311900 chr5A 687150126 687150989 863 False 610.0 610 79.6080 2176 3033 1 chr5A.!!$F1 857
6 TraesCS2B01G311900 chr5A 533973549 533974432 883 True 606.0 606 79.6260 2414 3296 1 chr5A.!!$R3 882
7 TraesCS2B01G311900 chr5A 533966657 533967394 737 True 551.0 551 80.4690 3834 4591 1 chr5A.!!$R2 757
8 TraesCS2B01G311900 chr5B 507870094 507870786 692 True 412.0 412 77.6690 3834 4541 1 chr5B.!!$R2 707
9 TraesCS2B01G311900 chr4B 58926095 58926630 535 False 276.0 276 76.4070 2173 2714 1 chr4B.!!$F1 541
10 TraesCS2B01G311900 chr4A 559495448 559495989 541 True 259.0 259 75.7190 2173 2720 1 chr4A.!!$R1 547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
338 344 0.178932 AGTGCCTCAGTACCACCTCA 60.179 55.0 0.00 0.0 0.0 3.86 F
339 345 0.247736 GTGCCTCAGTACCACCTCAG 59.752 60.0 0.00 0.0 0.0 3.35 F
340 346 0.178932 TGCCTCAGTACCACCTCAGT 60.179 55.0 0.00 0.0 0.0 3.41 F
349 355 0.251474 ACCACCTCAGTACGTAGCCA 60.251 55.0 0.00 0.0 0.0 4.75 F
350 356 0.456221 CCACCTCAGTACGTAGCCAG 59.544 60.0 0.00 0.0 0.0 4.85 F
1260 1283 0.610174 TTCTTGATGCCGAGCTGAGT 59.390 50.0 0.00 0.0 0.0 3.41 F
3521 3672 0.035534 TTGTGTCCAGTGTGCAGTGT 60.036 50.0 6.31 0.0 0.0 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1357 1380 0.397816 AGAAGGATGTCCGCCTAGCT 60.398 55.000 0.00 0.00 42.08 3.32 R
1479 1506 1.005450 TCCTGTATGGCCCAAGAAACC 59.995 52.381 0.00 0.00 35.26 3.27 R
2161 2253 1.153449 TAGTACATGGGCGCTGCAC 60.153 57.895 7.64 0.00 0.00 4.57 R
2351 2443 4.865761 GTGCCGTCGCGCAGGATA 62.866 66.667 21.05 8.08 45.21 2.59 R
3116 3251 2.588027 TCGCCTGTAAATATCACGCA 57.412 45.000 0.00 0.00 0.00 5.24 R
3678 3829 0.179073 CTAGATTGGAGGCCGGTGTG 60.179 60.000 1.90 0.00 0.00 3.82 R
5489 5655 0.037326 TTCTAAGGCTGCTCGTGGTG 60.037 55.000 0.00 0.00 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 7.035840 CAACCATGGAAGAGATTATTTGAGG 57.964 40.000 21.47 0.00 0.00 3.86
42 43 6.581388 ACCATGGAAGAGATTATTTGAGGA 57.419 37.500 21.47 0.00 0.00 3.71
43 44 7.159201 ACCATGGAAGAGATTATTTGAGGAT 57.841 36.000 21.47 0.00 0.00 3.24
44 45 7.002879 ACCATGGAAGAGATTATTTGAGGATG 58.997 38.462 21.47 0.00 0.00 3.51
45 46 7.147248 ACCATGGAAGAGATTATTTGAGGATGA 60.147 37.037 21.47 0.00 0.00 2.92
46 47 7.390996 CCATGGAAGAGATTATTTGAGGATGAG 59.609 40.741 5.56 0.00 0.00 2.90
47 48 6.835174 TGGAAGAGATTATTTGAGGATGAGG 58.165 40.000 0.00 0.00 0.00 3.86
48 49 5.704978 GGAAGAGATTATTTGAGGATGAGGC 59.295 44.000 0.00 0.00 0.00 4.70
49 50 4.892433 AGAGATTATTTGAGGATGAGGCG 58.108 43.478 0.00 0.00 0.00 5.52
50 51 3.406764 AGATTATTTGAGGATGAGGCGC 58.593 45.455 0.00 0.00 0.00 6.53
51 52 2.708216 TTATTTGAGGATGAGGCGCA 57.292 45.000 10.83 0.00 0.00 6.09
52 53 2.936919 TATTTGAGGATGAGGCGCAT 57.063 45.000 10.83 0.00 40.77 4.73
58 59 2.969238 GATGAGGCGCATCCGTGG 60.969 66.667 20.64 0.00 46.23 4.94
59 60 4.552365 ATGAGGCGCATCCGTGGG 62.552 66.667 20.64 0.00 40.77 4.61
64 65 3.361977 GCGCATCCGTGGGTGTTT 61.362 61.111 0.30 0.00 40.20 2.83
65 66 2.560861 CGCATCCGTGGGTGTTTG 59.439 61.111 0.37 0.00 33.90 2.93
66 67 1.963855 CGCATCCGTGGGTGTTTGA 60.964 57.895 0.37 0.00 33.90 2.69
67 68 1.875963 GCATCCGTGGGTGTTTGAG 59.124 57.895 0.37 0.00 0.00 3.02
68 69 0.605319 GCATCCGTGGGTGTTTGAGA 60.605 55.000 0.37 0.00 0.00 3.27
69 70 1.442769 CATCCGTGGGTGTTTGAGAG 58.557 55.000 0.00 0.00 0.00 3.20
70 71 0.324943 ATCCGTGGGTGTTTGAGAGG 59.675 55.000 0.00 0.00 0.00 3.69
71 72 1.052124 TCCGTGGGTGTTTGAGAGGT 61.052 55.000 0.00 0.00 0.00 3.85
72 73 0.179029 CCGTGGGTGTTTGAGAGGTT 60.179 55.000 0.00 0.00 0.00 3.50
73 74 0.944386 CGTGGGTGTTTGAGAGGTTG 59.056 55.000 0.00 0.00 0.00 3.77
74 75 1.318576 GTGGGTGTTTGAGAGGTTGG 58.681 55.000 0.00 0.00 0.00 3.77
75 76 1.133915 GTGGGTGTTTGAGAGGTTGGA 60.134 52.381 0.00 0.00 0.00 3.53
76 77 1.780309 TGGGTGTTTGAGAGGTTGGAT 59.220 47.619 0.00 0.00 0.00 3.41
77 78 2.176798 TGGGTGTTTGAGAGGTTGGATT 59.823 45.455 0.00 0.00 0.00 3.01
78 79 3.230976 GGGTGTTTGAGAGGTTGGATTT 58.769 45.455 0.00 0.00 0.00 2.17
79 80 3.005791 GGGTGTTTGAGAGGTTGGATTTG 59.994 47.826 0.00 0.00 0.00 2.32
80 81 3.005791 GGTGTTTGAGAGGTTGGATTTGG 59.994 47.826 0.00 0.00 0.00 3.28
81 82 3.636764 GTGTTTGAGAGGTTGGATTTGGT 59.363 43.478 0.00 0.00 0.00 3.67
82 83 4.825085 GTGTTTGAGAGGTTGGATTTGGTA 59.175 41.667 0.00 0.00 0.00 3.25
83 84 5.476945 GTGTTTGAGAGGTTGGATTTGGTAT 59.523 40.000 0.00 0.00 0.00 2.73
84 85 6.657541 GTGTTTGAGAGGTTGGATTTGGTATA 59.342 38.462 0.00 0.00 0.00 1.47
85 86 7.339466 GTGTTTGAGAGGTTGGATTTGGTATAT 59.661 37.037 0.00 0.00 0.00 0.86
86 87 7.339212 TGTTTGAGAGGTTGGATTTGGTATATG 59.661 37.037 0.00 0.00 0.00 1.78
101 102 0.389556 ATATGCGGCTGATGCTCTCG 60.390 55.000 0.00 0.00 39.59 4.04
108 109 0.996229 GCTGATGCTCTCGTCGATCG 60.996 60.000 9.36 9.36 37.25 3.69
138 139 4.910585 GACCGGGCGGCTACATGG 62.911 72.222 9.56 6.08 39.32 3.66
329 335 4.731612 CGCGAGCAGTGCCTCAGT 62.732 66.667 12.58 0.00 0.00 3.41
330 336 2.573869 GCGAGCAGTGCCTCAGTA 59.426 61.111 12.58 0.00 0.00 2.74
331 337 1.807573 GCGAGCAGTGCCTCAGTAC 60.808 63.158 12.58 0.00 0.00 2.73
332 338 1.153745 CGAGCAGTGCCTCAGTACC 60.154 63.158 12.58 0.00 0.00 3.34
333 339 1.877576 CGAGCAGTGCCTCAGTACCA 61.878 60.000 12.58 0.00 0.00 3.25
334 340 0.390472 GAGCAGTGCCTCAGTACCAC 60.390 60.000 12.58 0.00 0.00 4.16
335 341 1.376037 GCAGTGCCTCAGTACCACC 60.376 63.158 2.85 0.00 0.00 4.61
336 342 1.831652 GCAGTGCCTCAGTACCACCT 61.832 60.000 2.85 0.00 0.00 4.00
337 343 0.247736 CAGTGCCTCAGTACCACCTC 59.752 60.000 0.00 0.00 0.00 3.85
338 344 0.178932 AGTGCCTCAGTACCACCTCA 60.179 55.000 0.00 0.00 0.00 3.86
339 345 0.247736 GTGCCTCAGTACCACCTCAG 59.752 60.000 0.00 0.00 0.00 3.35
340 346 0.178932 TGCCTCAGTACCACCTCAGT 60.179 55.000 0.00 0.00 0.00 3.41
341 347 1.076513 TGCCTCAGTACCACCTCAGTA 59.923 52.381 0.00 0.00 0.00 2.74
342 348 1.477295 GCCTCAGTACCACCTCAGTAC 59.523 57.143 0.00 0.00 40.34 2.73
343 349 1.743958 CCTCAGTACCACCTCAGTACG 59.256 57.143 0.00 0.00 43.90 3.67
344 350 2.434428 CTCAGTACCACCTCAGTACGT 58.566 52.381 0.00 0.00 43.90 3.57
345 351 3.603532 CTCAGTACCACCTCAGTACGTA 58.396 50.000 0.00 0.00 43.90 3.57
346 352 3.603532 TCAGTACCACCTCAGTACGTAG 58.396 50.000 0.00 0.00 43.90 3.51
347 353 2.097142 CAGTACCACCTCAGTACGTAGC 59.903 54.545 0.00 0.00 43.90 3.58
348 354 1.403323 GTACCACCTCAGTACGTAGCC 59.597 57.143 0.00 0.00 31.52 3.93
349 355 0.251474 ACCACCTCAGTACGTAGCCA 60.251 55.000 0.00 0.00 0.00 4.75
350 356 0.456221 CCACCTCAGTACGTAGCCAG 59.544 60.000 0.00 0.00 0.00 4.85
351 357 1.174783 CACCTCAGTACGTAGCCAGT 58.825 55.000 0.00 0.00 0.00 4.00
352 358 2.362736 CACCTCAGTACGTAGCCAGTA 58.637 52.381 0.00 0.00 0.00 2.74
353 359 2.355132 CACCTCAGTACGTAGCCAGTAG 59.645 54.545 0.00 0.00 0.00 2.57
354 360 2.026449 ACCTCAGTACGTAGCCAGTAGT 60.026 50.000 0.00 0.00 0.00 2.73
355 361 3.198635 ACCTCAGTACGTAGCCAGTAGTA 59.801 47.826 0.00 0.00 0.00 1.82
356 362 3.808726 CCTCAGTACGTAGCCAGTAGTAG 59.191 52.174 0.00 0.00 0.00 2.57
357 363 4.440880 CTCAGTACGTAGCCAGTAGTAGT 58.559 47.826 0.00 0.00 0.00 2.73
358 364 5.452496 CCTCAGTACGTAGCCAGTAGTAGTA 60.452 48.000 0.00 0.00 0.00 1.82
359 365 5.595885 TCAGTACGTAGCCAGTAGTAGTAG 58.404 45.833 0.00 0.00 0.00 2.57
397 403 2.249309 CAAGTGGCGCGTGAAGTG 59.751 61.111 8.43 0.00 0.00 3.16
398 404 2.108157 AAGTGGCGCGTGAAGTGA 59.892 55.556 8.43 0.00 0.00 3.41
531 538 0.652592 GAAATGTGCCTCGGATGACG 59.347 55.000 0.00 0.00 46.11 4.35
648 663 4.084380 GCAACCAATAAAAGCAAGCAACTC 60.084 41.667 0.00 0.00 0.00 3.01
649 664 4.935352 ACCAATAAAAGCAAGCAACTCA 57.065 36.364 0.00 0.00 0.00 3.41
663 678 2.760374 CAACTCACACTTCTCCACTCC 58.240 52.381 0.00 0.00 0.00 3.85
664 679 1.343069 ACTCACACTTCTCCACTCCC 58.657 55.000 0.00 0.00 0.00 4.30
665 680 0.610687 CTCACACTTCTCCACTCCCC 59.389 60.000 0.00 0.00 0.00 4.81
705 720 4.349503 TGGCGGCACCAGCATCTT 62.350 61.111 7.97 0.00 46.36 2.40
723 738 4.963318 TCTTCACAGATTTCTCACACCT 57.037 40.909 0.00 0.00 0.00 4.00
727 742 6.706270 TCTTCACAGATTTCTCACACCTAAAC 59.294 38.462 0.00 0.00 0.00 2.01
729 744 4.455877 CACAGATTTCTCACACCTAAACCC 59.544 45.833 0.00 0.00 0.00 4.11
890 913 7.992033 CCAGGAAAAATCTCTCTTCATATCTGT 59.008 37.037 0.00 0.00 0.00 3.41
891 914 9.044150 CAGGAAAAATCTCTCTTCATATCTGTC 57.956 37.037 0.00 0.00 0.00 3.51
892 915 8.991275 AGGAAAAATCTCTCTTCATATCTGTCT 58.009 33.333 0.00 0.00 0.00 3.41
893 916 9.044150 GGAAAAATCTCTCTTCATATCTGTCTG 57.956 37.037 0.00 0.00 0.00 3.51
1061 1084 6.350612 CGATCCTTCTCTACCTGTTCTTCTTT 60.351 42.308 0.00 0.00 0.00 2.52
1108 1131 3.578282 TGTGAGAGCAATGGTAGTTCTCA 59.422 43.478 5.77 5.77 46.51 3.27
1248 1271 1.474077 GTGCCGCCTTCAATTCTTGAT 59.526 47.619 0.00 0.00 39.84 2.57
1260 1283 0.610174 TTCTTGATGCCGAGCTGAGT 59.390 50.000 0.00 0.00 0.00 3.41
1326 1349 1.273838 TGCCCACTAACCCATCTCTCT 60.274 52.381 0.00 0.00 0.00 3.10
1332 1355 4.020218 CCACTAACCCATCTCTCTTGTTCA 60.020 45.833 0.00 0.00 0.00 3.18
1400 1423 2.224161 TGCATGGCTAAACAAACCAACC 60.224 45.455 0.00 0.00 36.94 3.77
1407 1430 2.355717 AAACAAACCAACCGTGTGTG 57.644 45.000 0.00 0.00 42.48 3.82
1408 1431 1.249407 AACAAACCAACCGTGTGTGT 58.751 45.000 0.00 0.00 42.48 3.72
1409 1432 2.110901 ACAAACCAACCGTGTGTGTA 57.889 45.000 0.00 0.00 41.68 2.90
1410 1433 2.011222 ACAAACCAACCGTGTGTGTAG 58.989 47.619 0.00 0.00 41.68 2.74
1430 1457 4.361253 GCACGTCCTTGCTCTTCA 57.639 55.556 0.00 0.00 39.59 3.02
1497 1524 1.094785 CGGTTTCTTGGGCCATACAG 58.905 55.000 7.26 1.18 0.00 2.74
1571 1599 2.543777 ACGGTGCTCAGTTTGTGTAT 57.456 45.000 0.00 0.00 0.00 2.29
1574 1602 3.994392 ACGGTGCTCAGTTTGTGTATTAG 59.006 43.478 0.00 0.00 0.00 1.73
1632 1662 5.350091 GCTTTAGGACTAGCTTTCAGTGAAG 59.650 44.000 5.56 2.17 34.57 3.02
1713 1743 1.526917 GCACTTGTGTGGCCTGAGT 60.527 57.895 3.32 0.00 43.97 3.41
1870 1922 4.493747 CGTCGTCCTTCTCCCGCC 62.494 72.222 0.00 0.00 0.00 6.13
1990 2042 1.128692 CAACGCCTTTTCGTCCTGATC 59.871 52.381 0.00 0.00 42.46 2.92
2018 2080 3.378112 ACAACACATATACAGGCATGCAC 59.622 43.478 21.36 9.10 0.00 4.57
2096 2163 8.856490 ATGAAAATAATTGGCTCGTCATTAAC 57.144 30.769 0.00 0.00 0.00 2.01
2161 2253 2.223688 TGACTTGGTGAAATTTGGTGCG 60.224 45.455 0.00 0.00 0.00 5.34
2882 2990 4.404098 GACAACCCCACCGGCGAT 62.404 66.667 9.30 0.00 33.26 4.58
3116 3251 2.029649 GCATGCATGGTCTCAGTTGTTT 60.030 45.455 27.34 0.00 0.00 2.83
3117 3252 3.571571 CATGCATGGTCTCAGTTGTTTG 58.428 45.455 19.40 0.00 0.00 2.93
3128 3266 6.128391 GGTCTCAGTTGTTTGCGTGATATTTA 60.128 38.462 0.00 0.00 0.00 1.40
3235 3373 1.801178 GAAAAAGCCGGTCAGTCTCAG 59.199 52.381 1.90 0.00 0.00 3.35
3308 3450 1.064758 TCACAGGTGAGTGTGCCTTTT 60.065 47.619 0.00 0.00 46.32 2.27
3326 3468 4.035208 CCTTTTTGAGTTAGTTCGTGTGCT 59.965 41.667 0.00 0.00 0.00 4.40
3327 3469 5.448632 CCTTTTTGAGTTAGTTCGTGTGCTT 60.449 40.000 0.00 0.00 0.00 3.91
3328 3470 5.554822 TTTTGAGTTAGTTCGTGTGCTTT 57.445 34.783 0.00 0.00 0.00 3.51
3329 3471 5.554822 TTTGAGTTAGTTCGTGTGCTTTT 57.445 34.783 0.00 0.00 0.00 2.27
3330 3472 5.554822 TTGAGTTAGTTCGTGTGCTTTTT 57.445 34.783 0.00 0.00 0.00 1.94
3381 3528 2.194201 TTTCTAGGACCAAAAGGCGG 57.806 50.000 0.00 0.00 0.00 6.13
3521 3672 0.035534 TTGTGTCCAGTGTGCAGTGT 60.036 50.000 6.31 0.00 0.00 3.55
3611 3762 0.438830 GTCATGCGTTCTGTTCCGAC 59.561 55.000 0.00 0.00 0.00 4.79
3619 3770 1.997606 GTTCTGTTCCGACCCATTACG 59.002 52.381 0.00 0.00 0.00 3.18
3676 3827 1.614226 ATTGGCCTTGGCCTTGCAT 60.614 52.632 28.37 13.91 0.00 3.96
3677 3828 1.906105 ATTGGCCTTGGCCTTGCATG 61.906 55.000 28.37 0.00 0.00 4.06
3678 3829 4.462280 GGCCTTGGCCTTGCATGC 62.462 66.667 22.47 11.82 0.00 4.06
3679 3830 3.697747 GCCTTGGCCTTGCATGCA 61.698 61.111 18.46 18.46 0.00 3.96
3682 3833 1.373748 CTTGGCCTTGCATGCACAC 60.374 57.895 22.58 12.57 0.00 3.82
3683 3834 2.775032 CTTGGCCTTGCATGCACACC 62.775 60.000 22.58 21.43 0.00 4.16
3684 3835 4.424566 GGCCTTGCATGCACACCG 62.425 66.667 22.58 8.97 0.00 4.94
3685 3836 4.424566 GCCTTGCATGCACACCGG 62.425 66.667 22.58 18.56 0.00 5.28
3686 3837 4.424566 CCTTGCATGCACACCGGC 62.425 66.667 22.58 0.00 0.00 6.13
3687 3838 4.424566 CTTGCATGCACACCGGCC 62.425 66.667 22.58 0.00 0.00 6.13
3688 3839 4.972733 TTGCATGCACACCGGCCT 62.973 61.111 22.58 0.00 0.00 5.19
3691 3842 4.720902 CATGCACACCGGCCTCCA 62.721 66.667 0.00 0.00 0.00 3.86
3692 3843 3.965258 ATGCACACCGGCCTCCAA 61.965 61.111 0.00 0.00 0.00 3.53
3693 3844 3.286694 ATGCACACCGGCCTCCAAT 62.287 57.895 0.00 0.00 0.00 3.16
3729 3880 6.886459 ACTGAACTGATGCAACCTAACAATAT 59.114 34.615 0.00 0.00 0.00 1.28
3733 3884 8.978874 AACTGATGCAACCTAACAATATATCA 57.021 30.769 0.00 0.00 0.00 2.15
3734 3885 8.383318 ACTGATGCAACCTAACAATATATCAC 57.617 34.615 0.00 0.00 0.00 3.06
3776 3928 6.723298 TTTGACCACCATAATGTTTGTTCT 57.277 33.333 0.00 0.00 0.00 3.01
3801 3953 2.766313 TGTAAGTGTGTGGTGATGAGC 58.234 47.619 0.00 0.00 0.00 4.26
4098 4250 2.047939 CCGACCCCACCACGTAAC 60.048 66.667 0.00 0.00 0.00 2.50
4103 4255 1.665599 CCCCACCACGTAACGTCAC 60.666 63.158 0.00 0.00 38.32 3.67
4115 4267 0.033796 AACGTCACCTCCCGATCCTA 60.034 55.000 0.00 0.00 0.00 2.94
4116 4268 0.465824 ACGTCACCTCCCGATCCTAG 60.466 60.000 0.00 0.00 0.00 3.02
4128 4280 3.069729 CCCGATCCTAGTTTGTCCCTTAG 59.930 52.174 0.00 0.00 0.00 2.18
4133 4285 5.593679 TCCTAGTTTGTCCCTTAGATTCG 57.406 43.478 0.00 0.00 0.00 3.34
4134 4286 4.120589 CCTAGTTTGTCCCTTAGATTCGC 58.879 47.826 0.00 0.00 0.00 4.70
4299 4454 0.704664 TCTCTGAGGAGCCTGGTACA 59.295 55.000 4.59 0.00 39.31 2.90
4316 4471 7.582633 GCCTGGTACAATATTGGCTACCATATA 60.583 40.741 26.29 12.38 38.40 0.86
4376 4535 6.596497 GGACCATTCCTTACTGATTTCGTTTA 59.404 38.462 0.00 0.00 39.13 2.01
4567 4728 0.254178 GGGAGATGAAGAAGCCAGCA 59.746 55.000 0.00 0.00 0.00 4.41
4841 5004 5.186992 AGTTTTAGTTTCCAAGGTTGCACTT 59.813 36.000 0.00 0.00 0.00 3.16
4853 5016 9.154632 TCCAAGGTTGCACTTTATCTATCTATA 57.845 33.333 0.00 0.00 0.00 1.31
4877 5040 7.964604 ACATTATATCGCTAAAGGAAAGGTC 57.035 36.000 0.00 0.00 0.00 3.85
4900 5063 5.303845 TCCATTTTTGTCAATGTGACCATCA 59.696 36.000 5.96 0.00 46.40 3.07
4904 5067 1.346068 TGTCAATGTGACCATCACCGA 59.654 47.619 6.51 0.00 46.40 4.69
4913 5076 4.281435 TGTGACCATCACCGAGTTTACTTA 59.719 41.667 6.51 0.00 46.40 2.24
4934 5097 6.499350 ACTTATGGTCTCTAAACCCTACAACA 59.501 38.462 0.00 0.00 38.65 3.33
4947 5110 4.012374 CCCTACAACATGACAAGCTTGAT 58.988 43.478 32.50 16.58 0.00 2.57
5113 5279 8.696374 AGTGAGATTAAGATTAGGATGTTCGAA 58.304 33.333 0.00 0.00 0.00 3.71
5151 5317 0.115745 TAGACTTCCGAAGTGGGGGT 59.884 55.000 18.59 1.08 43.03 4.95
5154 5320 1.138464 GACTTCCGAAGTGGGGGTATC 59.862 57.143 18.59 0.00 43.03 2.24
5155 5321 1.200519 CTTCCGAAGTGGGGGTATCA 58.799 55.000 0.00 0.00 38.76 2.15
5156 5322 1.768870 CTTCCGAAGTGGGGGTATCAT 59.231 52.381 0.00 0.00 38.76 2.45
5163 5329 1.421646 AGTGGGGGTATCATAGCAAGC 59.578 52.381 0.00 0.00 0.00 4.01
5264 5430 6.942532 ATTAAGAAATGTGTCACTGTGTGT 57.057 33.333 7.79 0.00 34.79 3.72
5363 5529 8.706322 TTCTACTATGAACTACATATGGAGCA 57.294 34.615 15.30 6.30 40.18 4.26
5364 5530 8.706322 TCTACTATGAACTACATATGGAGCAA 57.294 34.615 15.30 1.04 40.18 3.91
5365 5531 8.797438 TCTACTATGAACTACATATGGAGCAAG 58.203 37.037 15.30 7.76 40.18 4.01
5366 5532 7.603180 ACTATGAACTACATATGGAGCAAGA 57.397 36.000 15.30 0.00 40.18 3.02
5367 5533 7.665690 ACTATGAACTACATATGGAGCAAGAG 58.334 38.462 15.30 9.55 40.18 2.85
5368 5534 5.939764 TGAACTACATATGGAGCAAGAGT 57.060 39.130 15.30 0.00 0.00 3.24
5369 5535 5.664457 TGAACTACATATGGAGCAAGAGTG 58.336 41.667 15.30 0.00 0.00 3.51
5370 5536 5.422012 TGAACTACATATGGAGCAAGAGTGA 59.578 40.000 15.30 0.00 0.00 3.41
5371 5537 6.098838 TGAACTACATATGGAGCAAGAGTGAT 59.901 38.462 15.30 0.00 0.00 3.06
5372 5538 6.491714 ACTACATATGGAGCAAGAGTGATT 57.508 37.500 15.30 0.00 0.00 2.57
5373 5539 6.520272 ACTACATATGGAGCAAGAGTGATTC 58.480 40.000 15.30 0.00 0.00 2.52
5374 5540 5.627182 ACATATGGAGCAAGAGTGATTCT 57.373 39.130 7.80 0.00 37.93 2.40
5375 5541 6.737720 ACATATGGAGCAAGAGTGATTCTA 57.262 37.500 7.80 0.00 34.14 2.10
5376 5542 6.520272 ACATATGGAGCAAGAGTGATTCTAC 58.480 40.000 7.80 0.00 34.14 2.59
5377 5543 6.098838 ACATATGGAGCAAGAGTGATTCTACA 59.901 38.462 7.80 0.00 34.14 2.74
5378 5544 4.193826 TGGAGCAAGAGTGATTCTACAC 57.806 45.455 0.00 0.00 40.60 2.90
5403 5569 9.314321 ACTCTAAAATGTATCTACAAACATCCG 57.686 33.333 0.00 0.00 39.99 4.18
5404 5570 9.314321 CTCTAAAATGTATCTACAAACATCCGT 57.686 33.333 0.00 0.00 39.99 4.69
5408 5574 8.958119 AAATGTATCTACAAACATCCGTATGT 57.042 30.769 0.00 0.00 42.03 2.29
5409 5575 7.946655 ATGTATCTACAAACATCCGTATGTG 57.053 36.000 0.00 0.00 41.17 3.21
5410 5576 6.869695 TGTATCTACAAACATCCGTATGTGT 58.130 36.000 0.00 0.00 45.79 3.72
5411 5577 7.324935 TGTATCTACAAACATCCGTATGTGTT 58.675 34.615 0.00 0.00 45.79 3.32
5412 5578 6.903883 ATCTACAAACATCCGTATGTGTTC 57.096 37.500 0.00 0.00 45.79 3.18
5413 5579 5.172934 TCTACAAACATCCGTATGTGTTCC 58.827 41.667 0.00 0.00 45.79 3.62
5414 5580 3.745799 ACAAACATCCGTATGTGTTCCA 58.254 40.909 0.00 0.00 45.79 3.53
5415 5581 4.331968 ACAAACATCCGTATGTGTTCCAT 58.668 39.130 0.00 0.00 45.79 3.41
5416 5582 5.492895 ACAAACATCCGTATGTGTTCCATA 58.507 37.500 0.00 0.00 45.79 2.74
5417 5583 5.584649 ACAAACATCCGTATGTGTTCCATAG 59.415 40.000 0.00 0.00 45.79 2.23
5418 5584 5.353394 AACATCCGTATGTGTTCCATAGT 57.647 39.130 0.00 0.00 45.79 2.12
5419 5585 4.693283 ACATCCGTATGTGTTCCATAGTG 58.307 43.478 0.00 0.00 44.79 2.74
5420 5586 4.404394 ACATCCGTATGTGTTCCATAGTGA 59.596 41.667 0.00 0.00 44.79 3.41
5421 5587 5.105106 ACATCCGTATGTGTTCCATAGTGAA 60.105 40.000 0.00 0.00 44.79 3.18
5422 5588 5.408880 TCCGTATGTGTTCCATAGTGAAA 57.591 39.130 0.00 0.00 36.71 2.69
5423 5589 5.984725 TCCGTATGTGTTCCATAGTGAAAT 58.015 37.500 0.00 0.00 36.71 2.17
5424 5590 7.114866 TCCGTATGTGTTCCATAGTGAAATA 57.885 36.000 0.00 0.00 36.71 1.40
5425 5591 7.732025 TCCGTATGTGTTCCATAGTGAAATAT 58.268 34.615 0.00 0.00 36.71 1.28
5426 5592 8.208224 TCCGTATGTGTTCCATAGTGAAATATT 58.792 33.333 0.00 0.00 36.71 1.28
5427 5593 8.836413 CCGTATGTGTTCCATAGTGAAATATTT 58.164 33.333 0.00 0.00 36.71 1.40
5454 5620 9.774413 ACAAATACTTATATTTAGGAACGGAGG 57.226 33.333 0.00 0.00 38.67 4.30
5455 5621 9.216117 CAAATACTTATATTTAGGAACGGAGGG 57.784 37.037 0.00 0.00 38.67 4.30
5456 5622 8.731591 AATACTTATATTTAGGAACGGAGGGA 57.268 34.615 0.00 0.00 0.00 4.20
5457 5623 6.667558 ACTTATATTTAGGAACGGAGGGAG 57.332 41.667 0.00 0.00 0.00 4.30
5486 5652 7.554118 ACATAGATACTATGCACTGCAAAAGTT 59.446 33.333 21.17 12.60 43.62 2.66
5487 5653 6.824305 AGATACTATGCACTGCAAAAGTTT 57.176 33.333 21.17 15.81 43.62 2.66
5488 5654 6.846350 AGATACTATGCACTGCAAAAGTTTC 58.154 36.000 21.17 20.93 43.62 2.78
5489 5655 4.243007 ACTATGCACTGCAAAAGTTTCC 57.757 40.909 8.03 0.00 43.62 3.13
5490 5656 3.636300 ACTATGCACTGCAAAAGTTTCCA 59.364 39.130 8.03 0.00 43.62 3.53
5491 5657 2.292103 TGCACTGCAAAAGTTTCCAC 57.708 45.000 0.00 0.00 36.83 4.02
5492 5658 1.134848 TGCACTGCAAAAGTTTCCACC 60.135 47.619 0.00 0.00 36.83 4.61
5493 5659 1.134848 GCACTGCAAAAGTTTCCACCA 60.135 47.619 0.00 0.00 36.83 4.17
5494 5660 2.539476 CACTGCAAAAGTTTCCACCAC 58.461 47.619 0.00 0.00 36.83 4.16
5495 5661 1.134175 ACTGCAAAAGTTTCCACCACG 59.866 47.619 0.00 0.00 34.57 4.94
5496 5662 1.403679 CTGCAAAAGTTTCCACCACGA 59.596 47.619 0.00 0.00 0.00 4.35
5497 5663 1.403679 TGCAAAAGTTTCCACCACGAG 59.596 47.619 0.00 0.00 0.00 4.18
5498 5664 1.864029 GCAAAAGTTTCCACCACGAGC 60.864 52.381 0.00 0.00 0.00 5.03
5499 5665 1.403679 CAAAAGTTTCCACCACGAGCA 59.596 47.619 0.00 0.00 0.00 4.26
5500 5666 1.308998 AAAGTTTCCACCACGAGCAG 58.691 50.000 0.00 0.00 0.00 4.24
5501 5667 1.166531 AAGTTTCCACCACGAGCAGC 61.167 55.000 0.00 0.00 0.00 5.25
5502 5668 2.281484 TTTCCACCACGAGCAGCC 60.281 61.111 0.00 0.00 0.00 4.85
5503 5669 2.818169 TTTCCACCACGAGCAGCCT 61.818 57.895 0.00 0.00 0.00 4.58
5504 5670 2.337879 TTTCCACCACGAGCAGCCTT 62.338 55.000 0.00 0.00 0.00 4.35
5505 5671 1.476845 TTCCACCACGAGCAGCCTTA 61.477 55.000 0.00 0.00 0.00 2.69
5506 5672 1.448540 CCACCACGAGCAGCCTTAG 60.449 63.158 0.00 0.00 0.00 2.18
5507 5673 1.591703 CACCACGAGCAGCCTTAGA 59.408 57.895 0.00 0.00 0.00 2.10
5508 5674 0.037326 CACCACGAGCAGCCTTAGAA 60.037 55.000 0.00 0.00 0.00 2.10
5509 5675 0.685097 ACCACGAGCAGCCTTAGAAA 59.315 50.000 0.00 0.00 0.00 2.52
5510 5676 1.338200 ACCACGAGCAGCCTTAGAAAG 60.338 52.381 0.00 0.00 0.00 2.62
5511 5677 1.066858 CCACGAGCAGCCTTAGAAAGA 60.067 52.381 0.00 0.00 0.00 2.52
5512 5678 2.266554 CACGAGCAGCCTTAGAAAGAG 58.733 52.381 0.00 0.00 0.00 2.85
5513 5679 1.205893 ACGAGCAGCCTTAGAAAGAGG 59.794 52.381 0.00 0.00 37.35 3.69
5514 5680 1.478510 CGAGCAGCCTTAGAAAGAGGA 59.521 52.381 0.00 0.00 36.33 3.71
5515 5681 2.737039 CGAGCAGCCTTAGAAAGAGGAC 60.737 54.545 0.00 0.00 36.33 3.85
5516 5682 1.557371 AGCAGCCTTAGAAAGAGGACC 59.443 52.381 0.00 0.00 36.33 4.46
5517 5683 1.407575 GCAGCCTTAGAAAGAGGACCC 60.408 57.143 0.00 0.00 36.33 4.46
5518 5684 2.192263 CAGCCTTAGAAAGAGGACCCT 58.808 52.381 0.00 0.00 36.33 4.34
5519 5685 2.093235 CAGCCTTAGAAAGAGGACCCTG 60.093 54.545 0.00 0.00 36.33 4.45
5520 5686 2.188817 GCCTTAGAAAGAGGACCCTGA 58.811 52.381 0.00 0.00 36.33 3.86
5521 5687 2.572104 GCCTTAGAAAGAGGACCCTGAA 59.428 50.000 0.00 0.00 36.33 3.02
5522 5688 3.369997 GCCTTAGAAAGAGGACCCTGAAG 60.370 52.174 0.00 0.00 36.33 3.02
5523 5689 3.198853 CCTTAGAAAGAGGACCCTGAAGG 59.801 52.174 0.00 0.00 43.78 3.46
5524 5690 2.723530 AGAAAGAGGACCCTGAAGGA 57.276 50.000 0.00 0.00 39.89 3.36
5525 5691 2.991580 AGAAAGAGGACCCTGAAGGAA 58.008 47.619 0.00 0.00 39.89 3.36
5526 5692 3.327439 AGAAAGAGGACCCTGAAGGAAA 58.673 45.455 0.00 0.00 39.89 3.13
5527 5693 3.919554 AGAAAGAGGACCCTGAAGGAAAT 59.080 43.478 0.00 0.00 39.89 2.17
5528 5694 5.101529 AGAAAGAGGACCCTGAAGGAAATA 58.898 41.667 0.00 0.00 39.89 1.40
5529 5695 5.733647 AGAAAGAGGACCCTGAAGGAAATAT 59.266 40.000 0.00 0.00 39.89 1.28
5530 5696 5.379706 AAGAGGACCCTGAAGGAAATATG 57.620 43.478 0.00 0.00 39.89 1.78
5531 5697 3.137360 AGAGGACCCTGAAGGAAATATGC 59.863 47.826 0.00 0.00 39.89 3.14
5532 5698 2.175715 AGGACCCTGAAGGAAATATGCC 59.824 50.000 0.00 0.00 39.89 4.40
5533 5699 2.587522 GACCCTGAAGGAAATATGCCC 58.412 52.381 0.00 0.00 39.89 5.36
5534 5700 2.175715 GACCCTGAAGGAAATATGCCCT 59.824 50.000 0.00 0.00 39.89 5.19
5535 5701 3.394606 GACCCTGAAGGAAATATGCCCTA 59.605 47.826 0.00 0.00 39.89 3.53
5536 5702 3.395941 ACCCTGAAGGAAATATGCCCTAG 59.604 47.826 0.00 0.00 39.89 3.02
5537 5703 3.652869 CCCTGAAGGAAATATGCCCTAGA 59.347 47.826 0.00 0.00 38.24 2.43
5538 5704 4.263243 CCCTGAAGGAAATATGCCCTAGAG 60.263 50.000 0.00 0.00 38.24 2.43
5539 5705 4.263243 CCTGAAGGAAATATGCCCTAGAGG 60.263 50.000 0.00 0.00 37.39 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.491045 CCATGGTTGGATACCCTAATTAAAAT 57.509 34.615 2.57 0.00 46.92 1.82
1 2 7.906199 CCATGGTTGGATACCCTAATTAAAA 57.094 36.000 2.57 0.00 46.92 1.52
16 17 6.040166 CCTCAAATAATCTCTTCCATGGTTGG 59.960 42.308 12.58 3.39 45.15 3.77
17 18 6.830324 TCCTCAAATAATCTCTTCCATGGTTG 59.170 38.462 12.58 4.87 0.00 3.77
18 19 6.973642 TCCTCAAATAATCTCTTCCATGGTT 58.026 36.000 12.58 0.00 0.00 3.67
19 20 6.581388 TCCTCAAATAATCTCTTCCATGGT 57.419 37.500 12.58 0.00 0.00 3.55
20 21 7.229308 TCATCCTCAAATAATCTCTTCCATGG 58.771 38.462 4.97 4.97 0.00 3.66
21 22 7.390996 CCTCATCCTCAAATAATCTCTTCCATG 59.609 40.741 0.00 0.00 0.00 3.66
22 23 7.460071 CCTCATCCTCAAATAATCTCTTCCAT 58.540 38.462 0.00 0.00 0.00 3.41
23 24 6.689946 GCCTCATCCTCAAATAATCTCTTCCA 60.690 42.308 0.00 0.00 0.00 3.53
24 25 5.704978 GCCTCATCCTCAAATAATCTCTTCC 59.295 44.000 0.00 0.00 0.00 3.46
25 26 5.407995 CGCCTCATCCTCAAATAATCTCTTC 59.592 44.000 0.00 0.00 0.00 2.87
26 27 5.303971 CGCCTCATCCTCAAATAATCTCTT 58.696 41.667 0.00 0.00 0.00 2.85
27 28 4.802248 GCGCCTCATCCTCAAATAATCTCT 60.802 45.833 0.00 0.00 0.00 3.10
28 29 3.434984 GCGCCTCATCCTCAAATAATCTC 59.565 47.826 0.00 0.00 0.00 2.75
29 30 3.181451 TGCGCCTCATCCTCAAATAATCT 60.181 43.478 4.18 0.00 0.00 2.40
30 31 3.141398 TGCGCCTCATCCTCAAATAATC 58.859 45.455 4.18 0.00 0.00 1.75
31 32 3.213206 TGCGCCTCATCCTCAAATAAT 57.787 42.857 4.18 0.00 0.00 1.28
32 33 2.708216 TGCGCCTCATCCTCAAATAA 57.292 45.000 4.18 0.00 0.00 1.40
33 34 2.771089 GATGCGCCTCATCCTCAAATA 58.229 47.619 4.18 0.00 44.54 1.40
34 35 1.602311 GATGCGCCTCATCCTCAAAT 58.398 50.000 4.18 0.00 44.54 2.32
35 36 3.085208 GATGCGCCTCATCCTCAAA 57.915 52.632 4.18 0.00 44.54 2.69
36 37 4.863707 GATGCGCCTCATCCTCAA 57.136 55.556 4.18 0.00 44.54 3.02
42 43 4.552365 CCCACGGATGCGCCTCAT 62.552 66.667 14.77 0.00 38.32 2.90
47 48 3.361977 AAACACCCACGGATGCGC 61.362 61.111 6.51 0.00 0.00 6.09
48 49 1.911293 CTCAAACACCCACGGATGCG 61.911 60.000 4.58 4.58 0.00 4.73
49 50 0.605319 TCTCAAACACCCACGGATGC 60.605 55.000 0.00 0.00 0.00 3.91
50 51 1.442769 CTCTCAAACACCCACGGATG 58.557 55.000 0.00 0.00 0.00 3.51
51 52 0.324943 CCTCTCAAACACCCACGGAT 59.675 55.000 0.00 0.00 0.00 4.18
52 53 1.052124 ACCTCTCAAACACCCACGGA 61.052 55.000 0.00 0.00 0.00 4.69
53 54 0.179029 AACCTCTCAAACACCCACGG 60.179 55.000 0.00 0.00 0.00 4.94
54 55 0.944386 CAACCTCTCAAACACCCACG 59.056 55.000 0.00 0.00 0.00 4.94
55 56 1.133915 TCCAACCTCTCAAACACCCAC 60.134 52.381 0.00 0.00 0.00 4.61
56 57 1.217916 TCCAACCTCTCAAACACCCA 58.782 50.000 0.00 0.00 0.00 4.51
57 58 2.586648 ATCCAACCTCTCAAACACCC 57.413 50.000 0.00 0.00 0.00 4.61
58 59 3.005791 CCAAATCCAACCTCTCAAACACC 59.994 47.826 0.00 0.00 0.00 4.16
59 60 3.636764 ACCAAATCCAACCTCTCAAACAC 59.363 43.478 0.00 0.00 0.00 3.32
60 61 3.909732 ACCAAATCCAACCTCTCAAACA 58.090 40.909 0.00 0.00 0.00 2.83
61 62 7.682021 GCATATACCAAATCCAACCTCTCAAAC 60.682 40.741 0.00 0.00 0.00 2.93
62 63 6.321181 GCATATACCAAATCCAACCTCTCAAA 59.679 38.462 0.00 0.00 0.00 2.69
63 64 5.827797 GCATATACCAAATCCAACCTCTCAA 59.172 40.000 0.00 0.00 0.00 3.02
64 65 5.376625 GCATATACCAAATCCAACCTCTCA 58.623 41.667 0.00 0.00 0.00 3.27
65 66 4.452455 CGCATATACCAAATCCAACCTCTC 59.548 45.833 0.00 0.00 0.00 3.20
66 67 4.389374 CGCATATACCAAATCCAACCTCT 58.611 43.478 0.00 0.00 0.00 3.69
67 68 3.502211 CCGCATATACCAAATCCAACCTC 59.498 47.826 0.00 0.00 0.00 3.85
68 69 3.486383 CCGCATATACCAAATCCAACCT 58.514 45.455 0.00 0.00 0.00 3.50
69 70 2.030274 GCCGCATATACCAAATCCAACC 60.030 50.000 0.00 0.00 0.00 3.77
70 71 2.884639 AGCCGCATATACCAAATCCAAC 59.115 45.455 0.00 0.00 0.00 3.77
71 72 2.884012 CAGCCGCATATACCAAATCCAA 59.116 45.455 0.00 0.00 0.00 3.53
72 73 2.105649 TCAGCCGCATATACCAAATCCA 59.894 45.455 0.00 0.00 0.00 3.41
73 74 2.778299 TCAGCCGCATATACCAAATCC 58.222 47.619 0.00 0.00 0.00 3.01
74 75 3.426695 GCATCAGCCGCATATACCAAATC 60.427 47.826 0.00 0.00 33.58 2.17
75 76 2.489329 GCATCAGCCGCATATACCAAAT 59.511 45.455 0.00 0.00 33.58 2.32
76 77 1.879380 GCATCAGCCGCATATACCAAA 59.121 47.619 0.00 0.00 33.58 3.28
77 78 1.072173 AGCATCAGCCGCATATACCAA 59.928 47.619 0.00 0.00 43.56 3.67
78 79 0.686789 AGCATCAGCCGCATATACCA 59.313 50.000 0.00 0.00 43.56 3.25
79 80 1.066573 AGAGCATCAGCCGCATATACC 60.067 52.381 0.00 0.00 43.56 2.73
80 81 2.266554 GAGAGCATCAGCCGCATATAC 58.733 52.381 0.00 0.00 43.56 1.47
81 82 1.135286 CGAGAGCATCAGCCGCATATA 60.135 52.381 0.00 0.00 43.56 0.86
82 83 0.389556 CGAGAGCATCAGCCGCATAT 60.390 55.000 0.00 0.00 43.56 1.78
83 84 1.006922 CGAGAGCATCAGCCGCATA 60.007 57.895 0.00 0.00 43.56 3.14
84 85 2.279985 CGAGAGCATCAGCCGCAT 60.280 61.111 0.00 0.00 43.56 4.73
85 86 3.706563 GACGAGAGCATCAGCCGCA 62.707 63.158 0.00 0.00 43.56 5.69
86 87 2.959071 GACGAGAGCATCAGCCGC 60.959 66.667 0.00 0.00 43.56 6.53
227 228 3.941644 GCACTTGCAGGTGAGTACACAC 61.942 54.545 30.90 14.30 43.62 3.82
273 274 0.395724 AGGTTTCCATCGATTGCCCC 60.396 55.000 0.00 0.00 0.00 5.80
281 282 2.166459 TGCTCTCTACAGGTTTCCATCG 59.834 50.000 0.00 0.00 0.00 3.84
323 329 1.743958 CGTACTGAGGTGGTACTGAGG 59.256 57.143 0.00 0.00 37.84 3.86
324 330 2.434428 ACGTACTGAGGTGGTACTGAG 58.566 52.381 0.00 0.00 37.84 3.35
325 331 2.574006 ACGTACTGAGGTGGTACTGA 57.426 50.000 0.00 0.00 37.84 3.41
326 332 2.097142 GCTACGTACTGAGGTGGTACTG 59.903 54.545 0.00 0.00 37.84 2.74
327 333 2.363683 GCTACGTACTGAGGTGGTACT 58.636 52.381 0.00 0.00 37.84 2.73
328 334 1.403323 GGCTACGTACTGAGGTGGTAC 59.597 57.143 0.00 0.00 36.97 3.34
329 335 1.004628 TGGCTACGTACTGAGGTGGTA 59.995 52.381 0.00 0.00 0.00 3.25
330 336 0.251474 TGGCTACGTACTGAGGTGGT 60.251 55.000 0.00 0.00 0.00 4.16
331 337 0.456221 CTGGCTACGTACTGAGGTGG 59.544 60.000 0.00 0.00 0.00 4.61
332 338 1.174783 ACTGGCTACGTACTGAGGTG 58.825 55.000 0.00 0.00 0.00 4.00
333 339 2.026449 ACTACTGGCTACGTACTGAGGT 60.026 50.000 0.00 0.00 0.00 3.85
334 340 2.641305 ACTACTGGCTACGTACTGAGG 58.359 52.381 0.00 0.00 0.00 3.86
335 341 4.440880 ACTACTACTGGCTACGTACTGAG 58.559 47.826 0.00 0.00 0.00 3.35
336 342 4.478206 ACTACTACTGGCTACGTACTGA 57.522 45.455 0.00 0.00 0.00 3.41
337 343 5.355596 ACTACTACTACTGGCTACGTACTG 58.644 45.833 0.00 0.00 0.00 2.74
338 344 5.606348 ACTACTACTACTGGCTACGTACT 57.394 43.478 0.00 0.00 0.00 2.73
339 345 5.692654 GGTACTACTACTACTGGCTACGTAC 59.307 48.000 0.00 0.00 0.00 3.67
340 346 5.598830 AGGTACTACTACTACTGGCTACGTA 59.401 44.000 0.00 0.00 36.02 3.57
341 347 4.407296 AGGTACTACTACTACTGGCTACGT 59.593 45.833 0.00 0.00 36.02 3.57
342 348 4.749099 CAGGTACTACTACTACTGGCTACG 59.251 50.000 0.00 0.00 36.02 3.51
343 349 4.514816 GCAGGTACTACTACTACTGGCTAC 59.485 50.000 0.00 0.00 36.02 3.58
344 350 4.164796 TGCAGGTACTACTACTACTGGCTA 59.835 45.833 0.00 0.00 36.02 3.93
345 351 3.053842 TGCAGGTACTACTACTACTGGCT 60.054 47.826 0.00 0.00 36.02 4.75
346 352 3.285484 TGCAGGTACTACTACTACTGGC 58.715 50.000 0.00 0.00 36.02 4.85
347 353 4.948621 ACTTGCAGGTACTACTACTACTGG 59.051 45.833 0.00 0.00 36.02 4.00
348 354 5.676584 GCACTTGCAGGTACTACTACTACTG 60.677 48.000 0.00 0.00 41.59 2.74
349 355 4.398673 GCACTTGCAGGTACTACTACTACT 59.601 45.833 0.00 0.00 41.59 2.57
350 356 4.670347 GCACTTGCAGGTACTACTACTAC 58.330 47.826 0.00 0.00 41.59 2.73
351 357 4.978083 GCACTTGCAGGTACTACTACTA 57.022 45.455 0.00 0.00 41.59 1.82
352 358 3.870633 GCACTTGCAGGTACTACTACT 57.129 47.619 0.00 0.00 41.59 2.57
397 403 1.337821 GGATACACCGCGATCGATTC 58.662 55.000 21.57 0.00 38.10 2.52
398 404 3.491581 GGATACACCGCGATCGATT 57.508 52.632 21.57 0.00 38.10 3.34
424 430 1.336440 CGTTTTTCCACCATCACTGCA 59.664 47.619 0.00 0.00 0.00 4.41
426 432 4.454161 TGATACGTTTTTCCACCATCACTG 59.546 41.667 0.00 0.00 0.00 3.66
531 538 1.297745 GTCTCGCTCGTGGTCGATC 60.298 63.158 0.00 0.00 45.21 3.69
648 663 1.127567 TGGGGGAGTGGAGAAGTGTG 61.128 60.000 0.00 0.00 0.00 3.82
649 664 0.401395 TTGGGGGAGTGGAGAAGTGT 60.401 55.000 0.00 0.00 0.00 3.55
663 678 4.366684 GGCTGGGTCTGGTTGGGG 62.367 72.222 0.00 0.00 0.00 4.96
664 679 3.574074 CTGGCTGGGTCTGGTTGGG 62.574 68.421 0.00 0.00 0.00 4.12
665 680 2.034687 CTGGCTGGGTCTGGTTGG 59.965 66.667 0.00 0.00 0.00 3.77
692 707 0.321919 TCTGTGAAGATGCTGGTGCC 60.322 55.000 0.00 0.00 38.71 5.01
699 714 4.142730 GGTGTGAGAAATCTGTGAAGATGC 60.143 45.833 0.00 0.00 0.00 3.91
703 718 6.073003 GGTTTAGGTGTGAGAAATCTGTGAAG 60.073 42.308 0.00 0.00 0.00 3.02
705 720 5.305585 GGTTTAGGTGTGAGAAATCTGTGA 58.694 41.667 0.00 0.00 0.00 3.58
723 738 3.855599 TGATGGAGGGAAATCTGGGTTTA 59.144 43.478 0.00 0.00 0.00 2.01
727 742 1.565759 TGTGATGGAGGGAAATCTGGG 59.434 52.381 0.00 0.00 0.00 4.45
729 744 3.920231 TCTGTGATGGAGGGAAATCTG 57.080 47.619 0.00 0.00 0.00 2.90
788 803 8.643324 AGTGCTAGTACTCCTATATTTTCCTTG 58.357 37.037 7.78 0.00 0.00 3.61
890 913 2.552315 GACAAAAGGCCACGAATTCAGA 59.448 45.455 5.01 0.00 0.00 3.27
891 914 2.554032 AGACAAAAGGCCACGAATTCAG 59.446 45.455 5.01 1.11 0.00 3.02
892 915 2.552315 GAGACAAAAGGCCACGAATTCA 59.448 45.455 5.01 0.00 0.00 2.57
893 916 2.552315 TGAGACAAAAGGCCACGAATTC 59.448 45.455 5.01 0.00 0.00 2.17
982 1005 3.612860 GTCATATTTATAGTGCGAGGGCG 59.387 47.826 0.00 0.00 44.10 6.13
1083 1106 1.618837 ACTACCATTGCTCTCACACGT 59.381 47.619 0.00 0.00 0.00 4.49
1084 1107 2.370281 ACTACCATTGCTCTCACACG 57.630 50.000 0.00 0.00 0.00 4.49
1108 1131 1.693640 CCCATGCAACTCTTCCCCT 59.306 57.895 0.00 0.00 0.00 4.79
1134 1157 4.962836 AGCAGCACCACCAGCACC 62.963 66.667 0.00 0.00 0.00 5.01
1135 1158 3.667282 CAGCAGCACCACCAGCAC 61.667 66.667 0.00 0.00 0.00 4.40
1138 1161 3.362797 CAGCAGCAGCACCACCAG 61.363 66.667 3.17 0.00 45.49 4.00
1141 1164 4.039357 CAGCAGCAGCAGCACCAC 62.039 66.667 12.92 0.00 45.49 4.16
1248 1271 3.449227 CCCGTACTCAGCTCGGCA 61.449 66.667 5.30 0.00 42.48 5.69
1260 1283 1.682005 CCGGAAGTGGTACCCCGTA 60.682 63.158 21.27 0.00 40.30 4.02
1326 1349 4.342862 AGCTTCACTCTAGCTTGAACAA 57.657 40.909 0.00 0.00 46.42 2.83
1356 1379 1.133450 AGAAGGATGTCCGCCTAGCTA 60.133 52.381 0.00 0.00 42.08 3.32
1357 1380 0.397816 AGAAGGATGTCCGCCTAGCT 60.398 55.000 0.00 0.00 42.08 3.32
1430 1457 5.679638 GCATGGTTTTGAAGTTCAGTTGTCT 60.680 40.000 5.56 0.00 0.00 3.41
1479 1506 1.005450 TCCTGTATGGCCCAAGAAACC 59.995 52.381 0.00 0.00 35.26 3.27
1500 1527 6.147821 ACAGAAATGGACACGATTAAGAAGTG 59.852 38.462 0.00 6.30 41.28 3.16
1506 1533 7.033530 ACAAAACAGAAATGGACACGATTAA 57.966 32.000 0.00 0.00 0.00 1.40
1603 1633 2.231215 AGCTAGTCCTAAAGCATGCG 57.769 50.000 13.01 0.00 41.32 4.73
1733 1763 7.851387 TGCATCGTTATTAAACTAATCCACA 57.149 32.000 0.00 0.00 33.15 4.17
1785 1823 9.063615 GGTGATAAGAAAAACCTCAAGTTAGAA 57.936 33.333 0.00 0.00 37.88 2.10
1870 1922 5.569413 GCGTGACAGGATATTAAAACAAGG 58.431 41.667 0.00 0.00 0.00 3.61
1990 2042 6.735678 TGCCTGTATATGTGTTGTTTAGTG 57.264 37.500 0.00 0.00 0.00 2.74
2096 2163 5.595257 TGAAGAGATGATCTCAGTGAAGG 57.405 43.478 23.17 0.00 45.73 3.46
2161 2253 1.153449 TAGTACATGGGCGCTGCAC 60.153 57.895 7.64 0.00 0.00 4.57
2351 2443 4.865761 GTGCCGTCGCGCAGGATA 62.866 66.667 21.05 8.08 45.21 2.59
3116 3251 2.588027 TCGCCTGTAAATATCACGCA 57.412 45.000 0.00 0.00 0.00 5.24
3117 3252 3.120649 GGAATCGCCTGTAAATATCACGC 60.121 47.826 0.00 0.00 0.00 5.34
3128 3266 1.517832 CTTCCTCGGAATCGCCTGT 59.482 57.895 0.00 0.00 36.13 4.00
3235 3373 4.717313 GCTTCACCACCCCGTCCC 62.717 72.222 0.00 0.00 0.00 4.46
3299 3437 3.942748 ACGAACTAACTCAAAAAGGCACA 59.057 39.130 0.00 0.00 0.00 4.57
3308 3450 5.554822 AAAAAGCACACGAACTAACTCAA 57.445 34.783 0.00 0.00 0.00 3.02
3327 3469 4.948608 TGCACACGAACTAACTCAAAAA 57.051 36.364 0.00 0.00 0.00 1.94
3328 3470 4.948608 TTGCACACGAACTAACTCAAAA 57.051 36.364 0.00 0.00 0.00 2.44
3329 3471 4.572795 TGATTGCACACGAACTAACTCAAA 59.427 37.500 0.00 0.00 0.00 2.69
3330 3472 4.123506 TGATTGCACACGAACTAACTCAA 58.876 39.130 0.00 0.00 0.00 3.02
3331 3473 3.723260 TGATTGCACACGAACTAACTCA 58.277 40.909 0.00 0.00 0.00 3.41
3332 3474 4.377431 CCTTGATTGCACACGAACTAACTC 60.377 45.833 0.00 0.00 0.00 3.01
3333 3475 3.498397 CCTTGATTGCACACGAACTAACT 59.502 43.478 0.00 0.00 0.00 2.24
3334 3476 3.250040 ACCTTGATTGCACACGAACTAAC 59.750 43.478 0.00 0.00 0.00 2.34
3335 3477 3.249799 CACCTTGATTGCACACGAACTAA 59.750 43.478 0.00 0.00 0.00 2.24
3336 3478 2.805671 CACCTTGATTGCACACGAACTA 59.194 45.455 0.00 0.00 0.00 2.24
3337 3479 1.603802 CACCTTGATTGCACACGAACT 59.396 47.619 0.00 0.00 0.00 3.01
3338 3480 1.601903 TCACCTTGATTGCACACGAAC 59.398 47.619 0.00 0.00 0.00 3.95
3339 3481 1.601903 GTCACCTTGATTGCACACGAA 59.398 47.619 0.00 0.00 0.00 3.85
3340 3482 1.225855 GTCACCTTGATTGCACACGA 58.774 50.000 0.00 0.00 0.00 4.35
3341 3483 0.943673 TGTCACCTTGATTGCACACG 59.056 50.000 0.00 0.00 0.00 4.49
3342 3484 3.648339 AATGTCACCTTGATTGCACAC 57.352 42.857 0.00 0.00 0.00 3.82
3343 3485 4.341806 AGAAAATGTCACCTTGATTGCACA 59.658 37.500 0.00 0.00 0.00 4.57
3344 3486 4.874970 AGAAAATGTCACCTTGATTGCAC 58.125 39.130 0.00 0.00 0.00 4.57
3345 3487 5.183713 CCTAGAAAATGTCACCTTGATTGCA 59.816 40.000 0.00 0.00 0.00 4.08
3346 3488 5.415701 TCCTAGAAAATGTCACCTTGATTGC 59.584 40.000 0.00 0.00 0.00 3.56
3347 3489 6.127897 GGTCCTAGAAAATGTCACCTTGATTG 60.128 42.308 0.00 0.00 0.00 2.67
3381 3528 3.566322 AGGCAGTACATAGTGATCTCGAC 59.434 47.826 0.00 0.00 0.00 4.20
3521 3672 2.092429 AGAAAAGGCACAACAGAGTGGA 60.092 45.455 0.00 0.00 39.87 4.02
3611 3762 5.522824 GTCTAGTTTTCTAAGCCGTAATGGG 59.477 44.000 0.00 0.00 32.90 4.00
3619 3770 4.097012 CGACGAGTCTAGTTTTCTAAGCC 58.903 47.826 1.56 0.00 31.45 4.35
3669 3820 4.424566 GCCGGTGTGCATGCAAGG 62.425 66.667 24.58 22.55 0.00 3.61
3676 3827 3.918253 GATTGGAGGCCGGTGTGCA 62.918 63.158 1.90 0.00 0.00 4.57
3677 3828 2.252072 TAGATTGGAGGCCGGTGTGC 62.252 60.000 1.90 0.00 0.00 4.57
3678 3829 0.179073 CTAGATTGGAGGCCGGTGTG 60.179 60.000 1.90 0.00 0.00 3.82
3679 3830 1.338136 CCTAGATTGGAGGCCGGTGT 61.338 60.000 1.90 0.00 0.00 4.16
3686 3837 2.122768 AGTTGGAGCCTAGATTGGAGG 58.877 52.381 0.00 0.00 37.12 4.30
3687 3838 2.768527 TCAGTTGGAGCCTAGATTGGAG 59.231 50.000 0.00 0.00 0.00 3.86
3688 3839 2.832838 TCAGTTGGAGCCTAGATTGGA 58.167 47.619 0.00 0.00 0.00 3.53
3689 3840 3.054802 AGTTCAGTTGGAGCCTAGATTGG 60.055 47.826 0.00 0.00 0.00 3.16
3690 3841 3.937706 CAGTTCAGTTGGAGCCTAGATTG 59.062 47.826 0.00 0.00 0.00 2.67
3691 3842 3.840666 TCAGTTCAGTTGGAGCCTAGATT 59.159 43.478 0.00 0.00 0.00 2.40
3692 3843 3.445008 TCAGTTCAGTTGGAGCCTAGAT 58.555 45.455 0.00 0.00 0.00 1.98
3693 3844 2.889512 TCAGTTCAGTTGGAGCCTAGA 58.110 47.619 0.00 0.00 0.00 2.43
3761 3913 9.965824 ACTTACAAAAGAGAACAAACATTATGG 57.034 29.630 0.00 0.00 36.50 2.74
3776 3928 5.432645 TCATCACCACACACTTACAAAAGA 58.567 37.500 0.00 0.00 36.50 2.52
3801 3953 9.245962 CAAGTTAGTCGGGTAATTAACTATGAG 57.754 37.037 0.00 0.00 35.82 2.90
3934 4086 4.003788 CTTCCACGTCGGCACCCT 62.004 66.667 0.00 0.00 33.14 4.34
3965 4117 0.817634 CGAGCACCCACAGACCAAAA 60.818 55.000 0.00 0.00 0.00 2.44
3990 4142 0.392327 GTCTTCTCCTCCAGCTTGGC 60.392 60.000 0.00 0.00 37.47 4.52
4098 4250 0.465824 ACTAGGATCGGGAGGTGACG 60.466 60.000 0.00 0.00 0.00 4.35
4103 4255 1.413077 GGACAAACTAGGATCGGGAGG 59.587 57.143 0.00 0.00 0.00 4.30
4115 4267 3.983044 AGCGAATCTAAGGGACAAACT 57.017 42.857 0.00 0.00 0.00 2.66
4116 4268 5.602628 AGATAGCGAATCTAAGGGACAAAC 58.397 41.667 3.08 0.00 43.45 2.93
4133 4285 1.926561 TGTCACACGCATGAGATAGC 58.073 50.000 2.50 0.00 0.00 2.97
4134 4286 4.610945 TGTATGTCACACGCATGAGATAG 58.389 43.478 2.50 0.00 35.99 2.08
4316 4471 6.465439 TGTACATTGTACGAGATGAGGAAT 57.535 37.500 19.28 0.00 0.00 3.01
4441 4601 0.689080 AGACCCGTGAGAGGATGCAT 60.689 55.000 0.00 0.00 0.00 3.96
4567 4728 3.678056 TTCTAAGCACCGTTCATGAGT 57.322 42.857 0.00 0.00 0.00 3.41
4853 5016 6.935208 GGACCTTTCCTTTAGCGATATAATGT 59.065 38.462 0.00 0.00 39.13 2.71
4891 5054 3.314541 AGTAAACTCGGTGATGGTCAC 57.685 47.619 1.54 1.54 46.23 3.67
4900 5063 7.318893 GTTTAGAGACCATAAGTAAACTCGGT 58.681 38.462 0.00 0.00 32.97 4.69
4904 5067 7.809880 AGGGTTTAGAGACCATAAGTAAACT 57.190 36.000 0.00 0.00 41.65 2.66
4913 5076 5.487488 TCATGTTGTAGGGTTTAGAGACCAT 59.513 40.000 0.00 0.00 41.65 3.55
4934 5097 4.533815 ACATCATGGATCAAGCTTGTCAT 58.466 39.130 25.19 21.57 0.00 3.06
5117 5283 7.166167 TCGGAAGTCTAAAAGCCTTAGAAAAT 58.834 34.615 7.30 0.00 33.32 1.82
5138 5304 2.605257 CTATGATACCCCCACTTCGGA 58.395 52.381 0.00 0.00 36.56 4.55
5151 5317 9.591792 GATACATTGATACTGCTTGCTATGATA 57.408 33.333 0.00 0.00 0.00 2.15
5154 5320 7.662604 TGATACATTGATACTGCTTGCTATG 57.337 36.000 0.00 0.00 0.00 2.23
5155 5321 7.148289 GCATGATACATTGATACTGCTTGCTAT 60.148 37.037 0.00 0.00 0.00 2.97
5156 5322 6.148315 GCATGATACATTGATACTGCTTGCTA 59.852 38.462 0.00 0.00 0.00 3.49
5163 5329 6.496338 AGCATGCATGATACATTGATACTG 57.504 37.500 30.64 0.00 0.00 2.74
5237 5403 8.506437 CACACAGTGACACATTTCTTAATATGT 58.494 33.333 7.81 0.00 34.20 2.29
5247 5413 3.243168 GCATGACACACAGTGACACATTT 60.243 43.478 7.81 0.00 40.36 2.32
5248 5414 2.291465 GCATGACACACAGTGACACATT 59.709 45.455 7.81 0.00 40.36 2.71
5264 5430 9.142515 GATGAACTCATTTATTGTTTTGCATGA 57.857 29.630 0.00 0.00 36.57 3.07
5337 5503 9.314133 TGCTCCATATGTAGTTCATAGTAGAAT 57.686 33.333 1.24 0.00 41.55 2.40
5338 5504 8.706322 TGCTCCATATGTAGTTCATAGTAGAA 57.294 34.615 1.24 0.00 41.55 2.10
5339 5505 8.706322 TTGCTCCATATGTAGTTCATAGTAGA 57.294 34.615 1.24 0.00 41.55 2.59
5340 5506 8.797438 TCTTGCTCCATATGTAGTTCATAGTAG 58.203 37.037 1.24 0.00 41.55 2.57
5341 5507 8.706322 TCTTGCTCCATATGTAGTTCATAGTA 57.294 34.615 1.24 0.00 41.55 1.82
5342 5508 7.288852 ACTCTTGCTCCATATGTAGTTCATAGT 59.711 37.037 1.24 0.00 41.55 2.12
5343 5509 7.598118 CACTCTTGCTCCATATGTAGTTCATAG 59.402 40.741 1.24 0.00 41.55 2.23
5344 5510 7.287696 TCACTCTTGCTCCATATGTAGTTCATA 59.712 37.037 1.24 0.00 42.30 2.15
5345 5511 6.098838 TCACTCTTGCTCCATATGTAGTTCAT 59.901 38.462 1.24 0.00 40.25 2.57
5346 5512 5.422012 TCACTCTTGCTCCATATGTAGTTCA 59.578 40.000 1.24 0.00 0.00 3.18
5347 5513 5.907207 TCACTCTTGCTCCATATGTAGTTC 58.093 41.667 1.24 0.00 0.00 3.01
5348 5514 5.939764 TCACTCTTGCTCCATATGTAGTT 57.060 39.130 1.24 0.00 0.00 2.24
5349 5515 6.326064 AGAATCACTCTTGCTCCATATGTAGT 59.674 38.462 1.24 0.00 0.00 2.73
5350 5516 6.757237 AGAATCACTCTTGCTCCATATGTAG 58.243 40.000 1.24 0.00 0.00 2.74
5351 5517 6.737720 AGAATCACTCTTGCTCCATATGTA 57.262 37.500 1.24 0.00 0.00 2.29
5352 5518 5.627182 AGAATCACTCTTGCTCCATATGT 57.373 39.130 1.24 0.00 0.00 2.29
5353 5519 6.423302 GTGTAGAATCACTCTTGCTCCATATG 59.577 42.308 0.00 0.00 35.41 1.78
5354 5520 6.326064 AGTGTAGAATCACTCTTGCTCCATAT 59.674 38.462 0.00 0.00 44.07 1.78
5355 5521 5.658634 AGTGTAGAATCACTCTTGCTCCATA 59.341 40.000 0.00 0.00 44.07 2.74
5356 5522 4.469227 AGTGTAGAATCACTCTTGCTCCAT 59.531 41.667 0.00 0.00 44.07 3.41
5357 5523 3.834813 AGTGTAGAATCACTCTTGCTCCA 59.165 43.478 0.00 0.00 44.07 3.86
5358 5524 4.464069 AGTGTAGAATCACTCTTGCTCC 57.536 45.455 0.00 0.00 44.07 4.70
5377 5543 9.314321 CGGATGTTTGTAGATACATTTTAGAGT 57.686 33.333 0.00 0.00 35.24 3.24
5378 5544 9.314321 ACGGATGTTTGTAGATACATTTTAGAG 57.686 33.333 0.00 0.00 35.24 2.43
5382 5548 9.391006 ACATACGGATGTTTGTAGATACATTTT 57.609 29.630 7.68 0.00 44.18 1.82
5383 5549 8.826710 CACATACGGATGTTTGTAGATACATTT 58.173 33.333 11.57 0.00 44.18 2.32
5384 5550 7.985184 ACACATACGGATGTTTGTAGATACATT 59.015 33.333 11.57 0.00 44.18 2.71
5385 5551 7.497595 ACACATACGGATGTTTGTAGATACAT 58.502 34.615 11.57 0.00 44.18 2.29
5386 5552 6.869695 ACACATACGGATGTTTGTAGATACA 58.130 36.000 11.57 0.00 44.18 2.29
5387 5553 7.042925 GGAACACATACGGATGTTTGTAGATAC 60.043 40.741 11.57 0.00 44.18 2.24
5388 5554 6.982141 GGAACACATACGGATGTTTGTAGATA 59.018 38.462 11.57 0.00 44.18 1.98
5389 5555 5.815740 GGAACACATACGGATGTTTGTAGAT 59.184 40.000 11.57 0.00 44.18 1.98
5390 5556 5.172934 GGAACACATACGGATGTTTGTAGA 58.827 41.667 11.57 0.00 44.18 2.59
5391 5557 4.932799 TGGAACACATACGGATGTTTGTAG 59.067 41.667 11.57 1.54 44.18 2.74
5392 5558 4.895961 TGGAACACATACGGATGTTTGTA 58.104 39.130 11.57 0.00 44.18 2.41
5393 5559 3.745799 TGGAACACATACGGATGTTTGT 58.254 40.909 11.57 4.03 44.18 2.83
5394 5560 4.963276 ATGGAACACATACGGATGTTTG 57.037 40.909 11.57 3.29 44.18 2.93
5395 5561 5.584649 CACTATGGAACACATACGGATGTTT 59.415 40.000 11.57 9.11 44.18 2.83
5396 5562 5.105106 TCACTATGGAACACATACGGATGTT 60.105 40.000 11.57 0.00 44.18 2.71
5428 5594 9.774413 CCTCCGTTCCTAAATATAAGTATTTGT 57.226 33.333 4.20 0.00 40.01 2.83
5429 5595 9.216117 CCCTCCGTTCCTAAATATAAGTATTTG 57.784 37.037 4.20 0.00 40.01 2.32
5430 5596 9.162733 TCCCTCCGTTCCTAAATATAAGTATTT 57.837 33.333 0.00 0.00 41.92 1.40
5431 5597 8.731591 TCCCTCCGTTCCTAAATATAAGTATT 57.268 34.615 0.00 0.00 31.89 1.89
5432 5598 7.954620 ACTCCCTCCGTTCCTAAATATAAGTAT 59.045 37.037 0.00 0.00 0.00 2.12
5433 5599 7.300658 ACTCCCTCCGTTCCTAAATATAAGTA 58.699 38.462 0.00 0.00 0.00 2.24
5434 5600 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
5435 5601 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
5436 5602 7.564660 TGTTACTCCCTCCGTTCCTAAATATAA 59.435 37.037 0.00 0.00 0.00 0.98
5437 5603 7.068702 TGTTACTCCCTCCGTTCCTAAATATA 58.931 38.462 0.00 0.00 0.00 0.86
5438 5604 5.901276 TGTTACTCCCTCCGTTCCTAAATAT 59.099 40.000 0.00 0.00 0.00 1.28
5439 5605 5.271598 TGTTACTCCCTCCGTTCCTAAATA 58.728 41.667 0.00 0.00 0.00 1.40
5440 5606 4.098894 TGTTACTCCCTCCGTTCCTAAAT 58.901 43.478 0.00 0.00 0.00 1.40
5441 5607 3.509442 TGTTACTCCCTCCGTTCCTAAA 58.491 45.455 0.00 0.00 0.00 1.85
5442 5608 3.173953 TGTTACTCCCTCCGTTCCTAA 57.826 47.619 0.00 0.00 0.00 2.69
5443 5609 2.905415 TGTTACTCCCTCCGTTCCTA 57.095 50.000 0.00 0.00 0.00 2.94
5444 5610 2.249309 ATGTTACTCCCTCCGTTCCT 57.751 50.000 0.00 0.00 0.00 3.36
5445 5611 3.294214 TCTATGTTACTCCCTCCGTTCC 58.706 50.000 0.00 0.00 0.00 3.62
5446 5612 5.769162 AGTATCTATGTTACTCCCTCCGTTC 59.231 44.000 0.00 0.00 0.00 3.95
5447 5613 5.703310 AGTATCTATGTTACTCCCTCCGTT 58.297 41.667 0.00 0.00 0.00 4.44
5448 5614 5.321934 AGTATCTATGTTACTCCCTCCGT 57.678 43.478 0.00 0.00 0.00 4.69
5449 5615 6.183360 GCATAGTATCTATGTTACTCCCTCCG 60.183 46.154 15.22 0.00 32.35 4.63
5450 5616 6.663953 TGCATAGTATCTATGTTACTCCCTCC 59.336 42.308 15.22 0.24 32.35 4.30
5451 5617 7.394923 AGTGCATAGTATCTATGTTACTCCCTC 59.605 40.741 15.22 2.45 32.35 4.30
5452 5618 7.177568 CAGTGCATAGTATCTATGTTACTCCCT 59.822 40.741 15.22 0.00 32.35 4.20
5453 5619 7.316640 CAGTGCATAGTATCTATGTTACTCCC 58.683 42.308 15.22 1.86 32.35 4.30
5454 5620 6.809196 GCAGTGCATAGTATCTATGTTACTCC 59.191 42.308 11.09 8.87 32.35 3.85
5455 5621 7.371159 TGCAGTGCATAGTATCTATGTTACTC 58.629 38.462 15.37 13.18 31.71 2.59
5456 5622 7.290110 TGCAGTGCATAGTATCTATGTTACT 57.710 36.000 15.37 15.46 31.71 2.24
5457 5623 7.946655 TTGCAGTGCATAGTATCTATGTTAC 57.053 36.000 20.50 14.06 38.76 2.50
5486 5652 1.476845 TAAGGCTGCTCGTGGTGGAA 61.477 55.000 0.00 0.00 0.00 3.53
5487 5653 1.888436 CTAAGGCTGCTCGTGGTGGA 61.888 60.000 0.00 0.00 0.00 4.02
5488 5654 1.448540 CTAAGGCTGCTCGTGGTGG 60.449 63.158 0.00 0.00 0.00 4.61
5489 5655 0.037326 TTCTAAGGCTGCTCGTGGTG 60.037 55.000 0.00 0.00 0.00 4.17
5490 5656 0.685097 TTTCTAAGGCTGCTCGTGGT 59.315 50.000 0.00 0.00 0.00 4.16
5491 5657 1.066858 TCTTTCTAAGGCTGCTCGTGG 60.067 52.381 0.00 0.00 0.00 4.94
5492 5658 2.266554 CTCTTTCTAAGGCTGCTCGTG 58.733 52.381 0.00 0.00 0.00 4.35
5493 5659 1.205893 CCTCTTTCTAAGGCTGCTCGT 59.794 52.381 0.00 0.00 0.00 4.18
5494 5660 1.478510 TCCTCTTTCTAAGGCTGCTCG 59.521 52.381 0.00 0.00 33.65 5.03
5495 5661 2.419436 GGTCCTCTTTCTAAGGCTGCTC 60.419 54.545 0.00 0.00 33.65 4.26
5496 5662 1.557371 GGTCCTCTTTCTAAGGCTGCT 59.443 52.381 0.00 0.00 33.65 4.24
5497 5663 1.407575 GGGTCCTCTTTCTAAGGCTGC 60.408 57.143 0.00 0.00 33.65 5.25
5498 5664 2.093235 CAGGGTCCTCTTTCTAAGGCTG 60.093 54.545 0.00 0.00 33.65 4.85
5499 5665 2.192263 CAGGGTCCTCTTTCTAAGGCT 58.808 52.381 0.00 0.00 33.65 4.58
5500 5666 2.188817 TCAGGGTCCTCTTTCTAAGGC 58.811 52.381 0.00 0.00 33.65 4.35
5501 5667 3.198853 CCTTCAGGGTCCTCTTTCTAAGG 59.801 52.174 0.00 0.00 35.05 2.69
5502 5668 4.097418 TCCTTCAGGGTCCTCTTTCTAAG 58.903 47.826 0.00 0.00 36.25 2.18
5503 5669 4.141990 TCCTTCAGGGTCCTCTTTCTAA 57.858 45.455 0.00 0.00 36.25 2.10
5504 5670 3.847042 TCCTTCAGGGTCCTCTTTCTA 57.153 47.619 0.00 0.00 36.25 2.10
5505 5671 2.723530 TCCTTCAGGGTCCTCTTTCT 57.276 50.000 0.00 0.00 36.25 2.52
5506 5672 3.790089 TTTCCTTCAGGGTCCTCTTTC 57.210 47.619 0.00 0.00 36.25 2.62
5507 5673 5.760131 CATATTTCCTTCAGGGTCCTCTTT 58.240 41.667 0.00 0.00 36.25 2.52
5508 5674 4.385754 GCATATTTCCTTCAGGGTCCTCTT 60.386 45.833 0.00 0.00 36.25 2.85
5509 5675 3.137360 GCATATTTCCTTCAGGGTCCTCT 59.863 47.826 0.00 0.00 36.25 3.69
5510 5676 3.481453 GCATATTTCCTTCAGGGTCCTC 58.519 50.000 0.00 0.00 36.25 3.71
5511 5677 2.175715 GGCATATTTCCTTCAGGGTCCT 59.824 50.000 0.00 0.00 36.25 3.85
5512 5678 2.587522 GGCATATTTCCTTCAGGGTCC 58.412 52.381 0.00 0.00 36.25 4.46
5513 5679 2.175715 AGGGCATATTTCCTTCAGGGTC 59.824 50.000 0.00 0.00 36.25 4.46
5514 5680 2.217776 AGGGCATATTTCCTTCAGGGT 58.782 47.619 0.00 0.00 36.25 4.34
5515 5681 3.652869 TCTAGGGCATATTTCCTTCAGGG 59.347 47.826 0.00 0.00 34.75 4.45
5516 5682 4.263243 CCTCTAGGGCATATTTCCTTCAGG 60.263 50.000 0.00 2.64 34.75 3.86
5517 5683 4.904241 CCTCTAGGGCATATTTCCTTCAG 58.096 47.826 0.00 0.00 34.75 3.02
5518 5684 4.982241 CCTCTAGGGCATATTTCCTTCA 57.018 45.455 0.00 0.00 34.75 3.02
5530 5696 8.637196 AATAACTTTATTATTGCCTCTAGGGC 57.363 34.615 13.60 13.60 44.71 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.