Multiple sequence alignment - TraesCS2B01G311000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G311000 chr2B 100.000 2707 0 0 1 2707 444843677 444846383 0.000000e+00 5000.0
1 TraesCS2B01G311000 chr2B 97.176 602 5 4 1 591 184954726 184955326 0.000000e+00 1007.0
2 TraesCS2B01G311000 chr2D 96.034 1790 37 17 595 2361 374144353 374146131 0.000000e+00 2881.0
3 TraesCS2B01G311000 chr2D 87.989 358 30 7 2363 2707 66874496 66874853 6.980000e-111 411.0
4 TraesCS2B01G311000 chr2A 93.837 1801 60 21 595 2361 507083508 507085291 0.000000e+00 2663.0
5 TraesCS2B01G311000 chr3A 99.662 591 2 0 1 591 594497536 594498126 0.000000e+00 1081.0
6 TraesCS2B01G311000 chr4D 90.067 594 39 9 1 592 450657582 450657007 0.000000e+00 752.0
7 TraesCS2B01G311000 chr4D 88.764 356 30 4 2362 2707 101655182 101654827 6.930000e-116 427.0
8 TraesCS2B01G311000 chr4D 87.887 355 32 5 2363 2707 170690870 170690517 9.020000e-110 407.0
9 TraesCS2B01G311000 chr5A 92.293 519 33 4 84 595 436607825 436607307 0.000000e+00 730.0
10 TraesCS2B01G311000 chr5D 89.091 605 30 7 1 595 437744603 437744025 0.000000e+00 719.0
11 TraesCS2B01G311000 chr5D 89.548 354 28 3 2363 2707 100120353 100120000 8.900000e-120 440.0
12 TraesCS2B01G311000 chr5D 88.547 358 31 6 2359 2707 500982705 500983061 2.490000e-115 425.0
13 TraesCS2B01G311000 chr5D 88.169 355 33 3 2362 2707 2584805 2584451 5.390000e-112 414.0
14 TraesCS2B01G311000 chr5D 87.921 356 35 4 2360 2707 57095656 57095301 1.940000e-111 412.0
15 TraesCS2B01G311000 chr4A 91.552 509 39 4 84 591 735400210 735399705 0.000000e+00 699.0
16 TraesCS2B01G311000 chr3B 89.608 510 33 4 84 592 32769094 32768604 4.920000e-177 630.0
17 TraesCS2B01G311000 chr3B 96.552 58 2 0 1 58 32769152 32769095 2.220000e-16 97.1
18 TraesCS2B01G311000 chr7A 93.434 396 25 1 198 592 715247954 715248349 1.080000e-163 586.0
19 TraesCS2B01G311000 chr7A 92.058 277 18 2 83 358 677448217 677448490 1.180000e-103 387.0
20 TraesCS2B01G311000 chr7A 91.855 221 16 2 350 568 677449324 677449544 9.410000e-80 307.0
21 TraesCS2B01G311000 chrUn 88.831 385 24 4 91 468 132137379 132137751 3.180000e-124 455.0
22 TraesCS2B01G311000 chr7D 88.202 356 30 6 2363 2707 20731144 20730790 5.390000e-112 414.0
23 TraesCS2B01G311000 chr5B 87.675 357 33 6 2362 2707 394583270 394582914 3.250000e-109 405.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G311000 chr2B 444843677 444846383 2706 False 5000.00 5000 100.0000 1 2707 1 chr2B.!!$F2 2706
1 TraesCS2B01G311000 chr2B 184954726 184955326 600 False 1007.00 1007 97.1760 1 591 1 chr2B.!!$F1 590
2 TraesCS2B01G311000 chr2D 374144353 374146131 1778 False 2881.00 2881 96.0340 595 2361 1 chr2D.!!$F2 1766
3 TraesCS2B01G311000 chr2A 507083508 507085291 1783 False 2663.00 2663 93.8370 595 2361 1 chr2A.!!$F1 1766
4 TraesCS2B01G311000 chr3A 594497536 594498126 590 False 1081.00 1081 99.6620 1 591 1 chr3A.!!$F1 590
5 TraesCS2B01G311000 chr4D 450657007 450657582 575 True 752.00 752 90.0670 1 592 1 chr4D.!!$R3 591
6 TraesCS2B01G311000 chr5A 436607307 436607825 518 True 730.00 730 92.2930 84 595 1 chr5A.!!$R1 511
7 TraesCS2B01G311000 chr5D 437744025 437744603 578 True 719.00 719 89.0910 1 595 1 chr5D.!!$R4 594
8 TraesCS2B01G311000 chr4A 735399705 735400210 505 True 699.00 699 91.5520 84 591 1 chr4A.!!$R1 507
9 TraesCS2B01G311000 chr3B 32768604 32769152 548 True 363.55 630 93.0800 1 592 2 chr3B.!!$R1 591
10 TraesCS2B01G311000 chr7A 677448217 677449544 1327 False 347.00 387 91.9565 83 568 2 chr7A.!!$F2 485

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
960 1859 1.211456 CCATCTCCTTCCCTTGCTCT 58.789 55.0 0.0 0.0 0.0 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2619 3566 0.095935 GTGATGACACATGTGAGCGC 59.904 55.0 31.94 15.96 45.32 5.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
334 370 3.753294 TTTTTCTCTTCCGAGCAGACT 57.247 42.857 0.00 0.00 37.19 3.24
592 1491 4.410400 CCCTTGGACGGCCCTGTC 62.410 72.222 3.83 0.00 38.17 3.51
636 1535 4.589374 AGTCTCGAAGTTAATGGGGATAGG 59.411 45.833 0.00 0.00 0.00 2.57
642 1541 2.140717 GTTAATGGGGATAGGCGAACG 58.859 52.381 0.00 0.00 0.00 3.95
748 1647 1.672356 CCACCAGCCTCAGAAACGG 60.672 63.158 0.00 0.00 0.00 4.44
816 1715 1.566018 GCGCGCCTCACAGTTACTTT 61.566 55.000 23.24 0.00 0.00 2.66
960 1859 1.211456 CCATCTCCTTCCCTTGCTCT 58.789 55.000 0.00 0.00 0.00 4.09
974 1873 1.255667 TGCTCTCCCTAACGTGTCCC 61.256 60.000 0.00 0.00 0.00 4.46
1001 1900 4.029809 CCAACCGTCCCCCACCTC 62.030 72.222 0.00 0.00 0.00 3.85
1061 1960 0.630673 TATTGGGGTCAGCAAGGCAT 59.369 50.000 0.00 0.00 0.00 4.40
1120 2024 0.448197 GTTCTAGCTCGCTTTTGCCC 59.552 55.000 0.00 0.00 43.93 5.36
1138 2042 2.878580 CCCGCGTAATTAGTGTGTGTA 58.121 47.619 4.92 0.00 0.00 2.90
1139 2043 2.855963 CCCGCGTAATTAGTGTGTGTAG 59.144 50.000 4.92 0.00 0.00 2.74
1140 2044 2.280708 CCGCGTAATTAGTGTGTGTAGC 59.719 50.000 4.92 0.00 0.00 3.58
1141 2045 3.176708 CGCGTAATTAGTGTGTGTAGCT 58.823 45.455 0.00 0.00 0.00 3.32
1142 2046 3.239941 CGCGTAATTAGTGTGTGTAGCTC 59.760 47.826 0.00 0.00 0.00 4.09
1147 2051 3.577649 TTAGTGTGTGTAGCTCTGCTC 57.422 47.619 0.00 0.00 40.44 4.26
1152 2056 1.133216 GTGTGTAGCTCTGCTCGATCA 59.867 52.381 0.00 0.00 40.44 2.92
1607 2511 3.644606 CCACCTGCCAGCTCCAGT 61.645 66.667 9.41 0.00 0.00 4.00
1659 2563 3.452474 GCTACTGCTTCACCTCTACATG 58.548 50.000 0.00 0.00 36.03 3.21
1660 2564 2.393271 ACTGCTTCACCTCTACATGC 57.607 50.000 0.00 0.00 0.00 4.06
1757 2678 4.822350 TGGTTTAATGGTGACGATGTGAAA 59.178 37.500 0.00 0.00 0.00 2.69
1841 2767 4.667415 CGATGCGATACGATTGATGCAAAT 60.667 41.667 0.00 0.00 35.78 2.32
1901 2827 8.035448 TCTCCAAGTCTCTGTAGATAGATGTA 57.965 38.462 0.00 0.00 33.30 2.29
1952 2881 9.094578 AGTACTGTTAAGAGCCATATCATATGT 57.905 33.333 3.91 0.00 0.00 2.29
1955 2884 8.029522 ACTGTTAAGAGCCATATCATATGTACG 58.970 37.037 3.91 0.00 0.00 3.67
2201 3139 0.472044 TTGTAAGTGGCCACTGCTCA 59.528 50.000 38.35 30.03 41.58 4.26
2293 3234 6.527722 TCAAAAGCATATGCAATTCGAAACTC 59.472 34.615 28.62 0.00 45.16 3.01
2361 3308 0.109723 GGCCCTGGTCTTACACACAA 59.890 55.000 0.00 0.00 0.00 3.33
2362 3309 1.271926 GGCCCTGGTCTTACACACAAT 60.272 52.381 0.00 0.00 0.00 2.71
2363 3310 2.514803 GCCCTGGTCTTACACACAATT 58.485 47.619 0.00 0.00 0.00 2.32
2364 3311 2.890945 GCCCTGGTCTTACACACAATTT 59.109 45.455 0.00 0.00 0.00 1.82
2365 3312 3.320826 GCCCTGGTCTTACACACAATTTT 59.679 43.478 0.00 0.00 0.00 1.82
2366 3313 4.202212 GCCCTGGTCTTACACACAATTTTT 60.202 41.667 0.00 0.00 0.00 1.94
2389 3336 6.664428 TTTTTAAAGAAGGATGACCCCAAG 57.336 37.500 0.00 0.00 36.73 3.61
2390 3337 2.222227 AAAGAAGGATGACCCCAAGC 57.778 50.000 0.00 0.00 36.73 4.01
2391 3338 0.332972 AAGAAGGATGACCCCAAGCC 59.667 55.000 0.00 0.00 36.73 4.35
2392 3339 0.551131 AGAAGGATGACCCCAAGCCT 60.551 55.000 0.00 0.00 36.73 4.58
2393 3340 0.106967 GAAGGATGACCCCAAGCCTC 60.107 60.000 0.00 0.00 36.73 4.70
2394 3341 0.551131 AAGGATGACCCCAAGCCTCT 60.551 55.000 0.00 0.00 36.73 3.69
2395 3342 0.985490 AGGATGACCCCAAGCCTCTC 60.985 60.000 0.00 0.00 36.73 3.20
2396 3343 1.529309 GATGACCCCAAGCCTCTCC 59.471 63.158 0.00 0.00 0.00 3.71
2397 3344 1.229951 ATGACCCCAAGCCTCTCCA 60.230 57.895 0.00 0.00 0.00 3.86
2398 3345 0.625683 ATGACCCCAAGCCTCTCCAT 60.626 55.000 0.00 0.00 0.00 3.41
2399 3346 1.274703 TGACCCCAAGCCTCTCCATC 61.275 60.000 0.00 0.00 0.00 3.51
2400 3347 0.985490 GACCCCAAGCCTCTCCATCT 60.985 60.000 0.00 0.00 0.00 2.90
2401 3348 1.277580 ACCCCAAGCCTCTCCATCTG 61.278 60.000 0.00 0.00 0.00 2.90
2402 3349 0.984961 CCCCAAGCCTCTCCATCTGA 60.985 60.000 0.00 0.00 0.00 3.27
2403 3350 0.914644 CCCAAGCCTCTCCATCTGAA 59.085 55.000 0.00 0.00 0.00 3.02
2404 3351 1.283029 CCCAAGCCTCTCCATCTGAAA 59.717 52.381 0.00 0.00 0.00 2.69
2405 3352 2.641305 CCAAGCCTCTCCATCTGAAAG 58.359 52.381 0.00 0.00 0.00 2.62
2416 3363 3.556817 TCTGAAAGATGCATGCGGT 57.443 47.368 14.09 3.84 38.67 5.68
2417 3364 1.372582 TCTGAAAGATGCATGCGGTC 58.627 50.000 14.09 13.66 38.67 4.79
2418 3365 1.089112 CTGAAAGATGCATGCGGTCA 58.911 50.000 20.70 14.22 34.07 4.02
2419 3366 1.674441 CTGAAAGATGCATGCGGTCAT 59.326 47.619 20.70 9.58 34.07 3.06
2420 3367 2.093890 TGAAAGATGCATGCGGTCATT 58.906 42.857 20.70 16.22 0.00 2.57
2421 3368 2.492881 TGAAAGATGCATGCGGTCATTT 59.507 40.909 20.70 17.04 0.00 2.32
2422 3369 3.056678 TGAAAGATGCATGCGGTCATTTT 60.057 39.130 20.70 14.43 0.00 1.82
2423 3370 4.157472 TGAAAGATGCATGCGGTCATTTTA 59.843 37.500 20.70 13.13 0.00 1.52
2424 3371 4.924305 AAGATGCATGCGGTCATTTTAT 57.076 36.364 20.70 3.70 0.00 1.40
2425 3372 4.924305 AGATGCATGCGGTCATTTTATT 57.076 36.364 20.70 0.61 0.00 1.40
2426 3373 4.613944 AGATGCATGCGGTCATTTTATTG 58.386 39.130 20.70 0.00 0.00 1.90
2427 3374 4.338964 AGATGCATGCGGTCATTTTATTGA 59.661 37.500 20.70 0.00 0.00 2.57
2428 3375 3.768406 TGCATGCGGTCATTTTATTGAC 58.232 40.909 14.09 0.00 44.27 3.18
2429 3376 3.443329 TGCATGCGGTCATTTTATTGACT 59.557 39.130 14.09 0.00 44.39 3.41
2430 3377 4.037690 GCATGCGGTCATTTTATTGACTC 58.962 43.478 0.00 0.00 44.39 3.36
2431 3378 4.438608 GCATGCGGTCATTTTATTGACTCA 60.439 41.667 0.00 4.24 44.39 3.41
2432 3379 5.639757 CATGCGGTCATTTTATTGACTCAA 58.360 37.500 4.75 0.00 44.39 3.02
2433 3380 5.295431 TGCGGTCATTTTATTGACTCAAG 57.705 39.130 4.75 0.00 44.39 3.02
2434 3381 4.155826 TGCGGTCATTTTATTGACTCAAGG 59.844 41.667 4.75 0.00 44.39 3.61
2435 3382 4.394920 GCGGTCATTTTATTGACTCAAGGA 59.605 41.667 4.75 0.00 44.39 3.36
2436 3383 5.673818 GCGGTCATTTTATTGACTCAAGGAC 60.674 44.000 4.75 0.00 44.39 3.85
2437 3384 5.163754 CGGTCATTTTATTGACTCAAGGACC 60.164 44.000 4.82 4.82 44.39 4.46
2438 3385 5.946377 GGTCATTTTATTGACTCAAGGACCT 59.054 40.000 7.21 0.00 44.39 3.85
2439 3386 6.434340 GGTCATTTTATTGACTCAAGGACCTT 59.566 38.462 0.00 0.00 44.39 3.50
2440 3387 7.610305 GGTCATTTTATTGACTCAAGGACCTTA 59.390 37.037 6.38 0.00 44.39 2.69
2441 3388 8.451748 GTCATTTTATTGACTCAAGGACCTTAC 58.548 37.037 6.38 0.07 42.22 2.34
2442 3389 8.160765 TCATTTTATTGACTCAAGGACCTTACA 58.839 33.333 6.38 2.73 0.00 2.41
2443 3390 8.792633 CATTTTATTGACTCAAGGACCTTACAA 58.207 33.333 6.38 11.19 0.00 2.41
2444 3391 8.754991 TTTTATTGACTCAAGGACCTTACAAA 57.245 30.769 6.38 0.00 0.00 2.83
2445 3392 7.979444 TTATTGACTCAAGGACCTTACAAAG 57.021 36.000 6.38 5.14 0.00 2.77
2446 3393 5.367945 TTGACTCAAGGACCTTACAAAGT 57.632 39.130 6.38 8.27 0.00 2.66
2447 3394 6.488769 TTGACTCAAGGACCTTACAAAGTA 57.511 37.500 6.38 0.00 0.00 2.24
2448 3395 6.097915 TGACTCAAGGACCTTACAAAGTAG 57.902 41.667 6.38 0.00 0.00 2.57
2449 3396 5.836898 TGACTCAAGGACCTTACAAAGTAGA 59.163 40.000 6.38 0.00 0.00 2.59
2450 3397 6.325545 TGACTCAAGGACCTTACAAAGTAGAA 59.674 38.462 6.38 0.00 0.00 2.10
2451 3398 6.522946 ACTCAAGGACCTTACAAAGTAGAAC 58.477 40.000 6.38 0.00 0.00 3.01
2452 3399 6.099269 ACTCAAGGACCTTACAAAGTAGAACA 59.901 38.462 6.38 0.00 0.00 3.18
2453 3400 6.891388 TCAAGGACCTTACAAAGTAGAACAA 58.109 36.000 6.38 0.00 0.00 2.83
2454 3401 6.764560 TCAAGGACCTTACAAAGTAGAACAAC 59.235 38.462 6.38 0.00 0.00 3.32
2455 3402 6.243216 AGGACCTTACAAAGTAGAACAACA 57.757 37.500 0.00 0.00 0.00 3.33
2456 3403 6.655930 AGGACCTTACAAAGTAGAACAACAA 58.344 36.000 0.00 0.00 0.00 2.83
2457 3404 7.287810 AGGACCTTACAAAGTAGAACAACAAT 58.712 34.615 0.00 0.00 0.00 2.71
2458 3405 8.434392 AGGACCTTACAAAGTAGAACAACAATA 58.566 33.333 0.00 0.00 0.00 1.90
2459 3406 9.227777 GGACCTTACAAAGTAGAACAACAATAT 57.772 33.333 0.00 0.00 0.00 1.28
2461 3408 8.512138 ACCTTACAAAGTAGAACAACAATATGC 58.488 33.333 0.00 0.00 0.00 3.14
2462 3409 7.968405 CCTTACAAAGTAGAACAACAATATGCC 59.032 37.037 0.00 0.00 0.00 4.40
2463 3410 8.630054 TTACAAAGTAGAACAACAATATGCCT 57.370 30.769 0.00 0.00 0.00 4.75
2464 3411 6.913170 ACAAAGTAGAACAACAATATGCCTG 58.087 36.000 0.00 0.00 0.00 4.85
2465 3412 6.714810 ACAAAGTAGAACAACAATATGCCTGA 59.285 34.615 0.00 0.00 0.00 3.86
2466 3413 7.230510 ACAAAGTAGAACAACAATATGCCTGAA 59.769 33.333 0.00 0.00 0.00 3.02
2467 3414 7.944729 AAGTAGAACAACAATATGCCTGAAT 57.055 32.000 0.00 0.00 0.00 2.57
2468 3415 7.559590 AGTAGAACAACAATATGCCTGAATC 57.440 36.000 0.00 0.00 0.00 2.52
2469 3416 5.841957 AGAACAACAATATGCCTGAATCC 57.158 39.130 0.00 0.00 0.00 3.01
2470 3417 5.263599 AGAACAACAATATGCCTGAATCCA 58.736 37.500 0.00 0.00 0.00 3.41
2471 3418 5.895534 AGAACAACAATATGCCTGAATCCAT 59.104 36.000 0.00 0.00 0.00 3.41
2472 3419 5.779529 ACAACAATATGCCTGAATCCATC 57.220 39.130 0.00 0.00 0.00 3.51
2473 3420 5.202765 ACAACAATATGCCTGAATCCATCA 58.797 37.500 0.00 0.00 36.38 3.07
2474 3421 5.836898 ACAACAATATGCCTGAATCCATCAT 59.163 36.000 0.00 0.00 37.44 2.45
2475 3422 6.325545 ACAACAATATGCCTGAATCCATCATT 59.674 34.615 0.00 0.00 37.44 2.57
2476 3423 6.989155 ACAATATGCCTGAATCCATCATTT 57.011 33.333 0.00 0.00 37.44 2.32
2477 3424 7.369551 ACAATATGCCTGAATCCATCATTTT 57.630 32.000 0.00 0.00 37.44 1.82
2478 3425 7.214381 ACAATATGCCTGAATCCATCATTTTG 58.786 34.615 0.00 0.00 37.44 2.44
2479 3426 4.682778 ATGCCTGAATCCATCATTTTGG 57.317 40.909 0.00 0.00 37.44 3.28
2480 3427 2.168936 TGCCTGAATCCATCATTTTGGC 59.831 45.455 0.00 0.00 40.65 4.52
2481 3428 2.168936 GCCTGAATCCATCATTTTGGCA 59.831 45.455 0.00 0.00 40.29 4.92
2482 3429 3.369681 GCCTGAATCCATCATTTTGGCAA 60.370 43.478 0.00 0.00 40.29 4.52
2483 3430 4.685030 GCCTGAATCCATCATTTTGGCAAT 60.685 41.667 0.00 0.00 40.29 3.56
2484 3431 5.453621 GCCTGAATCCATCATTTTGGCAATA 60.454 40.000 0.00 0.00 40.29 1.90
2485 3432 6.743208 GCCTGAATCCATCATTTTGGCAATAT 60.743 38.462 0.00 0.00 40.29 1.28
2486 3433 6.649141 CCTGAATCCATCATTTTGGCAATATG 59.351 38.462 20.40 20.40 37.44 1.78
2487 3434 5.992829 TGAATCCATCATTTTGGCAATATGC 59.007 36.000 21.29 9.48 36.36 3.14
2497 3444 3.614399 GCAATATGCCGCTACTCCT 57.386 52.632 0.00 0.00 37.42 3.69
2498 3445 2.743636 GCAATATGCCGCTACTCCTA 57.256 50.000 0.00 0.00 37.42 2.94
2499 3446 3.252974 GCAATATGCCGCTACTCCTAT 57.747 47.619 0.00 0.00 37.42 2.57
2500 3447 3.190874 GCAATATGCCGCTACTCCTATC 58.809 50.000 0.00 0.00 37.42 2.08
2501 3448 3.786635 CAATATGCCGCTACTCCTATCC 58.213 50.000 0.00 0.00 0.00 2.59
2502 3449 2.597578 TATGCCGCTACTCCTATCCA 57.402 50.000 0.00 0.00 0.00 3.41
2503 3450 1.944177 ATGCCGCTACTCCTATCCAT 58.056 50.000 0.00 0.00 0.00 3.41
2504 3451 2.597578 TGCCGCTACTCCTATCCATA 57.402 50.000 0.00 0.00 0.00 2.74
2505 3452 3.101643 TGCCGCTACTCCTATCCATAT 57.898 47.619 0.00 0.00 0.00 1.78
2506 3453 2.760650 TGCCGCTACTCCTATCCATATG 59.239 50.000 0.00 0.00 0.00 1.78
2507 3454 2.761208 GCCGCTACTCCTATCCATATGT 59.239 50.000 1.24 0.00 0.00 2.29
2508 3455 3.195825 GCCGCTACTCCTATCCATATGTT 59.804 47.826 1.24 0.00 0.00 2.71
2509 3456 4.748892 CCGCTACTCCTATCCATATGTTG 58.251 47.826 1.24 0.00 0.00 3.33
2510 3457 4.462834 CCGCTACTCCTATCCATATGTTGA 59.537 45.833 1.24 0.00 0.00 3.18
2511 3458 5.047306 CCGCTACTCCTATCCATATGTTGAA 60.047 44.000 1.24 0.00 0.00 2.69
2512 3459 6.096036 CGCTACTCCTATCCATATGTTGAAG 58.904 44.000 1.24 0.00 0.00 3.02
2513 3460 6.071896 CGCTACTCCTATCCATATGTTGAAGA 60.072 42.308 1.24 0.00 0.00 2.87
2514 3461 7.319646 GCTACTCCTATCCATATGTTGAAGAG 58.680 42.308 1.24 5.08 0.00 2.85
2515 3462 6.678568 ACTCCTATCCATATGTTGAAGAGG 57.321 41.667 1.24 4.85 0.00 3.69
2516 3463 6.146760 ACTCCTATCCATATGTTGAAGAGGT 58.853 40.000 1.24 0.00 0.00 3.85
2517 3464 6.042552 ACTCCTATCCATATGTTGAAGAGGTG 59.957 42.308 1.24 7.55 0.00 4.00
2518 3465 4.999950 CCTATCCATATGTTGAAGAGGTGC 59.000 45.833 1.24 0.00 0.00 5.01
2519 3466 3.998913 TCCATATGTTGAAGAGGTGCA 57.001 42.857 1.24 0.00 0.00 4.57
2520 3467 4.299586 TCCATATGTTGAAGAGGTGCAA 57.700 40.909 1.24 0.00 0.00 4.08
2521 3468 4.264253 TCCATATGTTGAAGAGGTGCAAG 58.736 43.478 1.24 0.00 0.00 4.01
2522 3469 3.181493 CCATATGTTGAAGAGGTGCAAGC 60.181 47.826 1.24 0.00 0.00 4.01
2523 3470 1.251251 ATGTTGAAGAGGTGCAAGCC 58.749 50.000 0.00 0.00 32.25 4.35
2524 3471 1.165907 TGTTGAAGAGGTGCAAGCCG 61.166 55.000 0.00 0.00 32.25 5.52
2525 3472 1.600636 TTGAAGAGGTGCAAGCCGG 60.601 57.895 0.00 0.00 32.25 6.13
2526 3473 2.050836 TTGAAGAGGTGCAAGCCGGA 62.051 55.000 5.05 0.00 32.25 5.14
2527 3474 2.032681 AAGAGGTGCAAGCCGGAC 59.967 61.111 5.05 0.00 32.25 4.79
2533 3480 3.617735 TGCAAGCCGGACCACGTA 61.618 61.111 5.05 0.00 42.24 3.57
2534 3481 3.116531 GCAAGCCGGACCACGTAC 61.117 66.667 5.05 0.00 42.24 3.67
2535 3482 2.433664 CAAGCCGGACCACGTACC 60.434 66.667 5.05 0.00 42.24 3.34
2536 3483 3.698820 AAGCCGGACCACGTACCC 61.699 66.667 5.05 0.00 42.24 3.69
2538 3485 4.446413 GCCGGACCACGTACCCAG 62.446 72.222 5.05 0.00 42.24 4.45
2539 3486 4.446413 CCGGACCACGTACCCAGC 62.446 72.222 0.00 0.00 42.24 4.85
2540 3487 4.446413 CGGACCACGTACCCAGCC 62.446 72.222 0.00 0.00 37.93 4.85
2541 3488 3.001406 GGACCACGTACCCAGCCT 61.001 66.667 0.00 0.00 0.00 4.58
2542 3489 2.577593 GACCACGTACCCAGCCTC 59.422 66.667 0.00 0.00 0.00 4.70
2543 3490 1.982938 GACCACGTACCCAGCCTCT 60.983 63.158 0.00 0.00 0.00 3.69
2544 3491 1.946475 GACCACGTACCCAGCCTCTC 61.946 65.000 0.00 0.00 0.00 3.20
2545 3492 1.982395 CCACGTACCCAGCCTCTCA 60.982 63.158 0.00 0.00 0.00 3.27
2546 3493 1.215647 CACGTACCCAGCCTCTCAC 59.784 63.158 0.00 0.00 0.00 3.51
2547 3494 1.982938 ACGTACCCAGCCTCTCACC 60.983 63.158 0.00 0.00 0.00 4.02
2548 3495 1.682684 CGTACCCAGCCTCTCACCT 60.683 63.158 0.00 0.00 0.00 4.00
2549 3496 0.395311 CGTACCCAGCCTCTCACCTA 60.395 60.000 0.00 0.00 0.00 3.08
2550 3497 1.861982 GTACCCAGCCTCTCACCTAA 58.138 55.000 0.00 0.00 0.00 2.69
2551 3498 1.757699 GTACCCAGCCTCTCACCTAAG 59.242 57.143 0.00 0.00 0.00 2.18
2552 3499 1.268283 ACCCAGCCTCTCACCTAAGC 61.268 60.000 0.00 0.00 0.00 3.09
2553 3500 1.524482 CCAGCCTCTCACCTAAGCC 59.476 63.158 0.00 0.00 0.00 4.35
2554 3501 0.980231 CCAGCCTCTCACCTAAGCCT 60.980 60.000 0.00 0.00 0.00 4.58
2555 3502 1.689575 CCAGCCTCTCACCTAAGCCTA 60.690 57.143 0.00 0.00 0.00 3.93
2556 3503 2.111384 CAGCCTCTCACCTAAGCCTAA 58.889 52.381 0.00 0.00 0.00 2.69
2557 3504 2.112190 AGCCTCTCACCTAAGCCTAAC 58.888 52.381 0.00 0.00 0.00 2.34
2558 3505 1.831736 GCCTCTCACCTAAGCCTAACA 59.168 52.381 0.00 0.00 0.00 2.41
2559 3506 2.436173 GCCTCTCACCTAAGCCTAACAT 59.564 50.000 0.00 0.00 0.00 2.71
2560 3507 3.493524 GCCTCTCACCTAAGCCTAACATC 60.494 52.174 0.00 0.00 0.00 3.06
2561 3508 3.964031 CCTCTCACCTAAGCCTAACATCT 59.036 47.826 0.00 0.00 0.00 2.90
2562 3509 5.141182 CCTCTCACCTAAGCCTAACATCTA 58.859 45.833 0.00 0.00 0.00 1.98
2563 3510 5.598830 CCTCTCACCTAAGCCTAACATCTAA 59.401 44.000 0.00 0.00 0.00 2.10
2564 3511 6.098409 CCTCTCACCTAAGCCTAACATCTAAA 59.902 42.308 0.00 0.00 0.00 1.85
2565 3512 7.113658 TCTCACCTAAGCCTAACATCTAAAG 57.886 40.000 0.00 0.00 0.00 1.85
2566 3513 5.671493 TCACCTAAGCCTAACATCTAAAGC 58.329 41.667 0.00 0.00 0.00 3.51
2567 3514 4.816925 CACCTAAGCCTAACATCTAAAGCC 59.183 45.833 0.00 0.00 0.00 4.35
2568 3515 4.058817 CCTAAGCCTAACATCTAAAGCCG 58.941 47.826 0.00 0.00 0.00 5.52
2569 3516 2.622064 AGCCTAACATCTAAAGCCGG 57.378 50.000 0.00 0.00 0.00 6.13
2570 3517 2.116238 AGCCTAACATCTAAAGCCGGA 58.884 47.619 5.05 0.00 0.00 5.14
2571 3518 2.103263 AGCCTAACATCTAAAGCCGGAG 59.897 50.000 5.05 0.00 0.00 4.63
2589 3536 3.626924 GCCCCGACCGAGCCATAT 61.627 66.667 0.00 0.00 0.00 1.78
2590 3537 2.343758 CCCCGACCGAGCCATATG 59.656 66.667 0.00 0.00 0.00 1.78
2591 3538 2.357517 CCCGACCGAGCCATATGC 60.358 66.667 0.00 0.00 41.71 3.14
2592 3539 2.357517 CCGACCGAGCCATATGCC 60.358 66.667 0.00 0.00 42.71 4.40
2593 3540 2.421314 CGACCGAGCCATATGCCA 59.579 61.111 0.00 0.00 42.71 4.92
2594 3541 1.665916 CGACCGAGCCATATGCCAG 60.666 63.158 0.00 0.00 42.71 4.85
2595 3542 1.302033 GACCGAGCCATATGCCAGG 60.302 63.158 0.00 0.00 42.71 4.45
2596 3543 2.072487 ACCGAGCCATATGCCAGGT 61.072 57.895 0.00 0.00 43.05 4.00
2597 3544 1.302033 CCGAGCCATATGCCAGGTC 60.302 63.158 0.00 0.00 42.71 3.85
2598 3545 1.302033 CGAGCCATATGCCAGGTCC 60.302 63.158 0.00 0.00 42.71 4.46
2599 3546 1.302033 GAGCCATATGCCAGGTCCG 60.302 63.158 0.00 0.00 42.71 4.79
2600 3547 1.758440 GAGCCATATGCCAGGTCCGA 61.758 60.000 0.00 0.00 42.71 4.55
2601 3548 1.302033 GCCATATGCCAGGTCCGAG 60.302 63.158 0.00 0.00 0.00 4.63
2602 3549 1.372683 CCATATGCCAGGTCCGAGG 59.627 63.158 0.00 0.00 0.00 4.63
2608 3555 2.429930 CCAGGTCCGAGGCACAAA 59.570 61.111 0.00 0.00 0.00 2.83
2609 3556 1.966451 CCAGGTCCGAGGCACAAAC 60.966 63.158 0.00 0.00 0.00 2.93
2610 3557 1.966451 CAGGTCCGAGGCACAAACC 60.966 63.158 0.00 0.00 0.00 3.27
2611 3558 3.047877 GGTCCGAGGCACAAACCG 61.048 66.667 0.00 0.00 33.69 4.44
2612 3559 3.047877 GTCCGAGGCACAAACCGG 61.048 66.667 0.00 0.00 43.02 5.28
2613 3560 3.552384 TCCGAGGCACAAACCGGT 61.552 61.111 0.00 0.00 42.34 5.28
2614 3561 3.047877 CCGAGGCACAAACCGGTC 61.048 66.667 8.04 0.00 37.40 4.79
2615 3562 3.047877 CGAGGCACAAACCGGTCC 61.048 66.667 8.04 3.84 33.69 4.46
2616 3563 3.047877 GAGGCACAAACCGGTCCG 61.048 66.667 8.04 3.60 33.69 4.79
2617 3564 3.524648 GAGGCACAAACCGGTCCGA 62.525 63.158 14.39 0.00 33.69 4.55
2618 3565 3.351416 GGCACAAACCGGTCCGAC 61.351 66.667 14.39 0.00 0.00 4.79
2619 3566 3.708734 GCACAAACCGGTCCGACG 61.709 66.667 14.39 0.00 0.00 5.12
2620 3567 3.708734 CACAAACCGGTCCGACGC 61.709 66.667 14.39 0.00 0.00 5.19
2628 3575 4.796231 GGTCCGACGCGCTCACAT 62.796 66.667 5.73 0.00 0.00 3.21
2629 3576 3.545481 GTCCGACGCGCTCACATG 61.545 66.667 5.73 0.00 0.00 3.21
2630 3577 4.050934 TCCGACGCGCTCACATGT 62.051 61.111 5.73 0.00 0.00 3.21
2631 3578 3.842126 CCGACGCGCTCACATGTG 61.842 66.667 20.18 20.18 0.00 3.21
2632 3579 3.105782 CGACGCGCTCACATGTGT 61.106 61.111 24.63 4.84 0.00 3.72
2633 3580 2.772189 GACGCGCTCACATGTGTC 59.228 61.111 24.63 16.26 38.30 3.67
2634 3581 2.021584 GACGCGCTCACATGTGTCA 61.022 57.895 24.63 6.40 43.34 3.58
2635 3582 1.354337 GACGCGCTCACATGTGTCAT 61.354 55.000 24.63 6.62 43.34 3.06
2636 3583 1.346197 CGCGCTCACATGTGTCATC 59.654 57.895 24.63 12.06 0.00 2.92
2637 3584 1.353609 CGCGCTCACATGTGTCATCA 61.354 55.000 24.63 4.88 0.00 3.07
2638 3585 0.095935 GCGCTCACATGTGTCATCAC 59.904 55.000 24.63 7.95 44.08 3.06
2639 3586 0.723414 CGCTCACATGTGTCATCACC 59.277 55.000 24.63 6.43 43.26 4.02
2640 3587 0.723414 GCTCACATGTGTCATCACCG 59.277 55.000 24.63 6.33 43.26 4.94
2641 3588 1.941209 GCTCACATGTGTCATCACCGT 60.941 52.381 24.63 0.00 43.26 4.83
2642 3589 1.995484 CTCACATGTGTCATCACCGTC 59.005 52.381 24.63 0.00 43.26 4.79
2643 3590 1.342819 TCACATGTGTCATCACCGTCA 59.657 47.619 24.63 0.00 43.26 4.35
2644 3591 2.028203 TCACATGTGTCATCACCGTCAT 60.028 45.455 24.63 0.00 43.26 3.06
2645 3592 2.349580 CACATGTGTCATCACCGTCATC 59.650 50.000 18.03 0.00 43.26 2.92
2646 3593 2.234661 ACATGTGTCATCACCGTCATCT 59.765 45.455 0.00 0.00 43.26 2.90
2647 3594 3.264947 CATGTGTCATCACCGTCATCTT 58.735 45.455 0.00 0.00 43.26 2.40
2648 3595 2.959516 TGTGTCATCACCGTCATCTTC 58.040 47.619 0.00 0.00 43.26 2.87
2649 3596 2.271800 GTGTCATCACCGTCATCTTCC 58.728 52.381 0.00 0.00 38.51 3.46
2650 3597 1.899142 TGTCATCACCGTCATCTTCCA 59.101 47.619 0.00 0.00 0.00 3.53
2651 3598 2.271800 GTCATCACCGTCATCTTCCAC 58.728 52.381 0.00 0.00 0.00 4.02
2652 3599 2.093973 GTCATCACCGTCATCTTCCACT 60.094 50.000 0.00 0.00 0.00 4.00
2653 3600 2.094026 TCATCACCGTCATCTTCCACTG 60.094 50.000 0.00 0.00 0.00 3.66
2654 3601 0.608130 TCACCGTCATCTTCCACTGG 59.392 55.000 0.00 0.00 0.00 4.00
2655 3602 0.321671 CACCGTCATCTTCCACTGGT 59.678 55.000 0.00 0.00 0.00 4.00
2656 3603 0.608640 ACCGTCATCTTCCACTGGTC 59.391 55.000 0.00 0.00 0.00 4.02
2657 3604 0.108138 CCGTCATCTTCCACTGGTCC 60.108 60.000 0.00 0.00 0.00 4.46
2658 3605 0.608130 CGTCATCTTCCACTGGTCCA 59.392 55.000 0.00 0.00 0.00 4.02
2659 3606 1.208052 CGTCATCTTCCACTGGTCCAT 59.792 52.381 0.00 0.00 0.00 3.41
2660 3607 2.739932 CGTCATCTTCCACTGGTCCATC 60.740 54.545 0.00 0.00 0.00 3.51
2661 3608 2.503356 GTCATCTTCCACTGGTCCATCT 59.497 50.000 0.00 0.00 0.00 2.90
2662 3609 3.054802 GTCATCTTCCACTGGTCCATCTT 60.055 47.826 0.00 0.00 0.00 2.40
2663 3610 3.198635 TCATCTTCCACTGGTCCATCTTC 59.801 47.826 0.00 0.00 0.00 2.87
2664 3611 2.619931 TCTTCCACTGGTCCATCTTCA 58.380 47.619 0.00 0.00 0.00 3.02
2665 3612 2.568956 TCTTCCACTGGTCCATCTTCAG 59.431 50.000 0.00 0.00 34.91 3.02
2666 3613 2.325661 TCCACTGGTCCATCTTCAGA 57.674 50.000 0.00 0.00 33.19 3.27
2667 3614 2.182827 TCCACTGGTCCATCTTCAGAG 58.817 52.381 0.00 0.00 33.19 3.35
2668 3615 1.406614 CCACTGGTCCATCTTCAGAGC 60.407 57.143 0.00 0.00 33.19 4.09
2669 3616 1.277273 CACTGGTCCATCTTCAGAGCA 59.723 52.381 0.00 0.00 38.12 4.26
2671 3618 1.942776 TGGTCCATCTTCAGAGCAGA 58.057 50.000 0.00 0.00 35.69 4.26
2672 3619 2.475155 TGGTCCATCTTCAGAGCAGAT 58.525 47.619 0.00 0.00 35.69 2.90
2673 3620 2.842496 TGGTCCATCTTCAGAGCAGATT 59.158 45.455 0.00 0.00 35.69 2.40
2674 3621 3.204526 GGTCCATCTTCAGAGCAGATTG 58.795 50.000 0.00 0.00 0.00 2.67
2675 3622 3.118482 GGTCCATCTTCAGAGCAGATTGA 60.118 47.826 0.00 0.00 0.00 2.57
2676 3623 4.121317 GTCCATCTTCAGAGCAGATTGAG 58.879 47.826 0.00 0.00 0.00 3.02
2677 3624 3.134262 TCCATCTTCAGAGCAGATTGAGG 59.866 47.826 0.00 0.00 0.00 3.86
2678 3625 3.118334 CCATCTTCAGAGCAGATTGAGGT 60.118 47.826 0.00 0.00 0.00 3.85
2679 3626 3.606595 TCTTCAGAGCAGATTGAGGTG 57.393 47.619 0.00 0.00 0.00 4.00
2680 3627 2.902486 TCTTCAGAGCAGATTGAGGTGT 59.098 45.455 0.00 0.00 0.00 4.16
2681 3628 3.056250 TCTTCAGAGCAGATTGAGGTGTC 60.056 47.826 0.00 0.00 0.00 3.67
2682 3629 2.250924 TCAGAGCAGATTGAGGTGTCA 58.749 47.619 0.00 0.00 0.00 3.58
2683 3630 2.634453 TCAGAGCAGATTGAGGTGTCAA 59.366 45.455 0.00 0.00 46.81 3.18
2694 3641 4.332683 TGAGGTGTCAATCTAGGTAGGT 57.667 45.455 0.00 0.00 0.00 3.08
2695 3642 4.279145 TGAGGTGTCAATCTAGGTAGGTC 58.721 47.826 0.00 0.00 0.00 3.85
2696 3643 3.637694 GAGGTGTCAATCTAGGTAGGTCC 59.362 52.174 0.00 0.00 0.00 4.46
2697 3644 8.469990 TTGAGGTGTCAATCTAGGTAGGTCCT 62.470 46.154 0.00 0.00 42.68 3.85
2698 3645 3.637694 GGTGTCAATCTAGGTAGGTCCTC 59.362 52.174 0.00 0.00 44.42 3.71
2699 3646 3.637694 GTGTCAATCTAGGTAGGTCCTCC 59.362 52.174 0.00 0.00 44.42 4.30
2700 3647 2.885894 GTCAATCTAGGTAGGTCCTCCG 59.114 54.545 0.00 0.00 44.42 4.63
2701 3648 1.614413 CAATCTAGGTAGGTCCTCCGC 59.386 57.143 0.00 0.00 44.42 5.54
2702 3649 0.112801 ATCTAGGTAGGTCCTCCGCC 59.887 60.000 0.00 0.00 44.42 6.13
2703 3650 1.229359 CTAGGTAGGTCCTCCGCCA 59.771 63.158 0.00 0.00 44.42 5.69
2704 3651 0.178958 CTAGGTAGGTCCTCCGCCAT 60.179 60.000 0.00 0.00 44.42 4.40
2705 3652 0.178970 TAGGTAGGTCCTCCGCCATC 60.179 60.000 0.00 0.00 44.42 3.51
2706 3653 2.728817 GTAGGTCCTCCGCCATCG 59.271 66.667 0.00 0.00 39.05 3.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
532 1430 3.083349 GGGCCCCCAAATTCCAGC 61.083 66.667 12.23 0.00 35.81 4.85
592 1491 4.580995 ACTCTGACCCGACATTACTGATAG 59.419 45.833 0.00 0.00 0.00 2.08
732 1631 0.472471 TTTCCGTTTCTGAGGCTGGT 59.528 50.000 0.00 0.00 0.00 4.00
816 1715 0.613853 AGCCGTGGAAGCAGTAGGTA 60.614 55.000 0.00 0.00 0.00 3.08
960 1859 1.305549 GAGGGGGACACGTTAGGGA 60.306 63.158 0.00 0.00 0.00 4.20
974 1873 2.933834 ACGGTTGGGGGAAGAGGG 60.934 66.667 0.00 0.00 0.00 4.30
1035 1934 3.916359 TGCTGACCCCAATATAACGAA 57.084 42.857 0.00 0.00 0.00 3.85
1115 2015 1.080298 CACACTAATTACGCGGGCAA 58.920 50.000 12.47 1.09 0.00 4.52
1116 2016 0.037139 ACACACTAATTACGCGGGCA 60.037 50.000 12.47 0.00 0.00 5.36
1120 2024 3.176708 AGCTACACACACTAATTACGCG 58.823 45.455 3.53 3.53 0.00 6.01
1147 2051 0.585357 GTAAGCCATGCAGCTGATCG 59.415 55.000 20.43 3.59 44.11 3.69
1607 2511 2.119611 TCTTGCACCCGGAGAGGA 59.880 61.111 0.73 0.00 45.00 3.71
1660 2564 4.024218 GCAAGAAGAAGCTAGGCATATGTG 60.024 45.833 4.29 0.00 0.00 3.21
1841 2767 6.735130 TCGATCGATCATCACTAGCTAAAAA 58.265 36.000 24.40 0.00 0.00 1.94
1901 2827 5.126545 AGCAACATCATCAAGCACAACATAT 59.873 36.000 0.00 0.00 0.00 1.78
1952 2881 4.588899 TCAAAGGTGGTAGCTACTACGTA 58.411 43.478 28.51 15.33 38.40 3.57
1953 2882 3.424703 TCAAAGGTGGTAGCTACTACGT 58.575 45.455 27.70 26.15 38.40 3.57
1954 2883 4.650754 ATCAAAGGTGGTAGCTACTACG 57.349 45.455 27.70 17.16 38.40 3.51
1955 2884 7.147949 TGTCTAATCAAAGGTGGTAGCTACTAC 60.148 40.741 27.21 27.21 37.01 2.73
2002 2936 4.406069 TCGTATTGACTCGTTAAAGTCCG 58.594 43.478 5.12 2.39 44.17 4.79
2201 3139 2.230266 GGTCACGTGGTTAATGCCAAAT 59.770 45.455 17.00 0.00 40.68 2.32
2281 3222 1.394917 CCGCAGAGGAGTTTCGAATTG 59.605 52.381 0.00 0.00 45.00 2.32
2366 3313 5.011635 GCTTGGGGTCATCCTTCTTTAAAAA 59.988 40.000 0.00 0.00 35.33 1.94
2367 3314 4.526650 GCTTGGGGTCATCCTTCTTTAAAA 59.473 41.667 0.00 0.00 35.33 1.52
2368 3315 4.086457 GCTTGGGGTCATCCTTCTTTAAA 58.914 43.478 0.00 0.00 35.33 1.52
2369 3316 3.563479 GGCTTGGGGTCATCCTTCTTTAA 60.563 47.826 0.00 0.00 35.33 1.52
2370 3317 2.025321 GGCTTGGGGTCATCCTTCTTTA 60.025 50.000 0.00 0.00 35.33 1.85
2371 3318 1.272704 GGCTTGGGGTCATCCTTCTTT 60.273 52.381 0.00 0.00 35.33 2.52
2372 3319 0.332972 GGCTTGGGGTCATCCTTCTT 59.667 55.000 0.00 0.00 35.33 2.52
2373 3320 0.551131 AGGCTTGGGGTCATCCTTCT 60.551 55.000 0.00 0.00 35.33 2.85
2374 3321 0.106967 GAGGCTTGGGGTCATCCTTC 60.107 60.000 0.00 0.00 35.33 3.46
2375 3322 0.551131 AGAGGCTTGGGGTCATCCTT 60.551 55.000 0.00 0.00 35.33 3.36
2376 3323 0.985490 GAGAGGCTTGGGGTCATCCT 60.985 60.000 0.00 0.00 35.33 3.24
2377 3324 1.529309 GAGAGGCTTGGGGTCATCC 59.471 63.158 0.00 0.00 0.00 3.51
2378 3325 1.274703 TGGAGAGGCTTGGGGTCATC 61.275 60.000 0.00 0.00 0.00 2.92
2379 3326 0.625683 ATGGAGAGGCTTGGGGTCAT 60.626 55.000 0.00 0.00 0.00 3.06
2380 3327 1.229951 ATGGAGAGGCTTGGGGTCA 60.230 57.895 0.00 0.00 0.00 4.02
2381 3328 0.985490 AGATGGAGAGGCTTGGGGTC 60.985 60.000 0.00 0.00 0.00 4.46
2382 3329 1.083706 AGATGGAGAGGCTTGGGGT 59.916 57.895 0.00 0.00 0.00 4.95
2383 3330 0.984961 TCAGATGGAGAGGCTTGGGG 60.985 60.000 0.00 0.00 0.00 4.96
2384 3331 0.914644 TTCAGATGGAGAGGCTTGGG 59.085 55.000 0.00 0.00 0.00 4.12
2385 3332 2.238144 TCTTTCAGATGGAGAGGCTTGG 59.762 50.000 0.00 0.00 0.00 3.61
2386 3333 3.623906 TCTTTCAGATGGAGAGGCTTG 57.376 47.619 0.00 0.00 0.00 4.01
2387 3334 4.153673 CATCTTTCAGATGGAGAGGCTT 57.846 45.455 5.92 0.00 46.34 4.35
2388 3335 3.842007 CATCTTTCAGATGGAGAGGCT 57.158 47.619 5.92 0.00 46.34 4.58
2396 3343 7.445569 AATGACCGCATGCATCTTTCAGATG 62.446 44.000 19.57 9.08 43.30 2.90
2397 3344 1.945394 GACCGCATGCATCTTTCAGAT 59.055 47.619 19.57 0.00 34.74 2.90
2398 3345 1.338960 TGACCGCATGCATCTTTCAGA 60.339 47.619 19.57 0.00 0.00 3.27
2399 3346 1.089112 TGACCGCATGCATCTTTCAG 58.911 50.000 19.57 0.00 0.00 3.02
2400 3347 1.753930 ATGACCGCATGCATCTTTCA 58.246 45.000 19.57 11.78 32.31 2.69
2401 3348 2.857592 AATGACCGCATGCATCTTTC 57.142 45.000 19.57 6.30 34.26 2.62
2402 3349 3.598019 AAAATGACCGCATGCATCTTT 57.402 38.095 19.57 14.97 34.26 2.52
2403 3350 4.924305 ATAAAATGACCGCATGCATCTT 57.076 36.364 19.57 9.78 34.26 2.40
2404 3351 4.338964 TCAATAAAATGACCGCATGCATCT 59.661 37.500 19.57 0.00 34.26 2.90
2405 3352 4.442073 GTCAATAAAATGACCGCATGCATC 59.558 41.667 19.57 14.88 43.11 3.91
2406 3353 4.362279 GTCAATAAAATGACCGCATGCAT 58.638 39.130 19.57 4.56 43.11 3.96
2407 3354 3.768406 GTCAATAAAATGACCGCATGCA 58.232 40.909 19.57 0.00 43.11 3.96
2416 3363 8.160765 TGTAAGGTCCTTGAGTCAATAAAATGA 58.839 33.333 14.84 0.00 0.00 2.57
2417 3364 8.335532 TGTAAGGTCCTTGAGTCAATAAAATG 57.664 34.615 14.84 0.00 0.00 2.32
2418 3365 8.934023 TTGTAAGGTCCTTGAGTCAATAAAAT 57.066 30.769 14.84 0.00 0.00 1.82
2419 3366 8.754991 TTTGTAAGGTCCTTGAGTCAATAAAA 57.245 30.769 14.84 0.00 0.00 1.52
2420 3367 7.996644 ACTTTGTAAGGTCCTTGAGTCAATAAA 59.003 33.333 14.84 3.39 0.00 1.40
2421 3368 7.514721 ACTTTGTAAGGTCCTTGAGTCAATAA 58.485 34.615 14.84 0.00 0.00 1.40
2422 3369 7.074653 ACTTTGTAAGGTCCTTGAGTCAATA 57.925 36.000 14.84 0.00 0.00 1.90
2423 3370 5.941788 ACTTTGTAAGGTCCTTGAGTCAAT 58.058 37.500 14.84 0.00 0.00 2.57
2424 3371 5.367945 ACTTTGTAAGGTCCTTGAGTCAA 57.632 39.130 14.84 5.25 0.00 3.18
2425 3372 5.836898 TCTACTTTGTAAGGTCCTTGAGTCA 59.163 40.000 14.84 5.61 0.00 3.41
2426 3373 6.342338 TCTACTTTGTAAGGTCCTTGAGTC 57.658 41.667 14.84 3.16 0.00 3.36
2427 3374 6.099269 TGTTCTACTTTGTAAGGTCCTTGAGT 59.901 38.462 14.84 13.74 0.00 3.41
2428 3375 6.522054 TGTTCTACTTTGTAAGGTCCTTGAG 58.478 40.000 14.84 9.02 0.00 3.02
2429 3376 6.488769 TGTTCTACTTTGTAAGGTCCTTGA 57.511 37.500 14.84 0.00 0.00 3.02
2430 3377 6.540914 TGTTGTTCTACTTTGTAAGGTCCTTG 59.459 38.462 14.84 0.00 0.00 3.61
2431 3378 6.655930 TGTTGTTCTACTTTGTAAGGTCCTT 58.344 36.000 9.62 9.62 0.00 3.36
2432 3379 6.243216 TGTTGTTCTACTTTGTAAGGTCCT 57.757 37.500 0.00 0.00 0.00 3.85
2433 3380 6.930667 TTGTTGTTCTACTTTGTAAGGTCC 57.069 37.500 0.00 0.00 0.00 4.46
2435 3382 8.512138 GCATATTGTTGTTCTACTTTGTAAGGT 58.488 33.333 0.00 0.00 0.00 3.50
2436 3383 7.968405 GGCATATTGTTGTTCTACTTTGTAAGG 59.032 37.037 0.00 0.00 0.00 2.69
2437 3384 8.730680 AGGCATATTGTTGTTCTACTTTGTAAG 58.269 33.333 0.00 0.00 0.00 2.34
2438 3385 8.511321 CAGGCATATTGTTGTTCTACTTTGTAA 58.489 33.333 0.00 0.00 0.00 2.41
2439 3386 7.880713 TCAGGCATATTGTTGTTCTACTTTGTA 59.119 33.333 0.00 0.00 0.00 2.41
2440 3387 6.714810 TCAGGCATATTGTTGTTCTACTTTGT 59.285 34.615 0.00 0.00 0.00 2.83
2441 3388 7.144722 TCAGGCATATTGTTGTTCTACTTTG 57.855 36.000 0.00 0.00 0.00 2.77
2442 3389 7.759489 TTCAGGCATATTGTTGTTCTACTTT 57.241 32.000 0.00 0.00 0.00 2.66
2443 3390 7.067494 GGATTCAGGCATATTGTTGTTCTACTT 59.933 37.037 0.00 0.00 0.00 2.24
2444 3391 6.543831 GGATTCAGGCATATTGTTGTTCTACT 59.456 38.462 0.00 0.00 0.00 2.57
2445 3392 6.318648 TGGATTCAGGCATATTGTTGTTCTAC 59.681 38.462 0.00 0.00 0.00 2.59
2446 3393 6.422333 TGGATTCAGGCATATTGTTGTTCTA 58.578 36.000 0.00 0.00 0.00 2.10
2447 3394 5.263599 TGGATTCAGGCATATTGTTGTTCT 58.736 37.500 0.00 0.00 0.00 3.01
2448 3395 5.581126 TGGATTCAGGCATATTGTTGTTC 57.419 39.130 0.00 0.00 0.00 3.18
2449 3396 5.657745 TGATGGATTCAGGCATATTGTTGTT 59.342 36.000 0.00 0.00 0.00 2.83
2450 3397 5.202765 TGATGGATTCAGGCATATTGTTGT 58.797 37.500 0.00 0.00 0.00 3.32
2451 3398 5.777850 TGATGGATTCAGGCATATTGTTG 57.222 39.130 0.00 0.00 0.00 3.33
2452 3399 6.989155 AATGATGGATTCAGGCATATTGTT 57.011 33.333 0.00 0.00 37.89 2.83
2453 3400 6.989155 AAATGATGGATTCAGGCATATTGT 57.011 33.333 0.00 0.00 37.89 2.71
2454 3401 6.649141 CCAAAATGATGGATTCAGGCATATTG 59.351 38.462 0.00 0.00 43.54 1.90
2455 3402 6.743208 GCCAAAATGATGGATTCAGGCATATT 60.743 38.462 0.00 0.00 43.54 1.28
2456 3403 5.279809 GCCAAAATGATGGATTCAGGCATAT 60.280 40.000 0.00 0.00 43.54 1.78
2457 3404 4.039488 GCCAAAATGATGGATTCAGGCATA 59.961 41.667 0.00 0.00 43.54 3.14
2458 3405 3.181458 GCCAAAATGATGGATTCAGGCAT 60.181 43.478 0.00 0.00 43.54 4.40
2459 3406 2.168936 GCCAAAATGATGGATTCAGGCA 59.831 45.455 0.00 0.00 43.54 4.75
2460 3407 2.168936 TGCCAAAATGATGGATTCAGGC 59.831 45.455 1.27 0.00 43.54 4.85
2461 3408 4.475051 TTGCCAAAATGATGGATTCAGG 57.525 40.909 1.27 0.00 43.54 3.86
2462 3409 6.147164 GCATATTGCCAAAATGATGGATTCAG 59.853 38.462 1.27 0.00 43.54 3.02
2463 3410 5.992829 GCATATTGCCAAAATGATGGATTCA 59.007 36.000 1.27 0.00 43.54 2.57
2464 3411 6.476243 GCATATTGCCAAAATGATGGATTC 57.524 37.500 1.27 0.00 43.54 2.52
2479 3426 2.743636 TAGGAGTAGCGGCATATTGC 57.256 50.000 1.45 0.00 44.08 3.56
2480 3427 3.195610 TGGATAGGAGTAGCGGCATATTG 59.804 47.826 1.45 0.00 0.00 1.90
2481 3428 3.441101 TGGATAGGAGTAGCGGCATATT 58.559 45.455 1.45 0.00 0.00 1.28
2482 3429 3.101643 TGGATAGGAGTAGCGGCATAT 57.898 47.619 1.45 0.00 0.00 1.78
2483 3430 2.597578 TGGATAGGAGTAGCGGCATA 57.402 50.000 1.45 0.00 0.00 3.14
2484 3431 1.944177 ATGGATAGGAGTAGCGGCAT 58.056 50.000 1.45 0.00 0.00 4.40
2485 3432 2.597578 TATGGATAGGAGTAGCGGCA 57.402 50.000 1.45 0.00 0.00 5.69
2486 3433 2.761208 ACATATGGATAGGAGTAGCGGC 59.239 50.000 7.80 0.00 0.00 6.53
2487 3434 4.462834 TCAACATATGGATAGGAGTAGCGG 59.537 45.833 7.80 0.00 0.00 5.52
2488 3435 5.644977 TCAACATATGGATAGGAGTAGCG 57.355 43.478 7.80 0.00 0.00 4.26
2489 3436 7.233389 TCTTCAACATATGGATAGGAGTAGC 57.767 40.000 7.80 0.00 0.00 3.58
2490 3437 7.453126 ACCTCTTCAACATATGGATAGGAGTAG 59.547 40.741 7.80 1.25 0.00 2.57
2491 3438 7.233553 CACCTCTTCAACATATGGATAGGAGTA 59.766 40.741 7.80 0.00 0.00 2.59
2492 3439 6.042552 CACCTCTTCAACATATGGATAGGAGT 59.957 42.308 7.80 0.00 0.00 3.85
2493 3440 6.462500 CACCTCTTCAACATATGGATAGGAG 58.538 44.000 7.80 8.57 0.00 3.69
2494 3441 5.221722 GCACCTCTTCAACATATGGATAGGA 60.222 44.000 7.80 0.00 0.00 2.94
2495 3442 4.999950 GCACCTCTTCAACATATGGATAGG 59.000 45.833 7.80 8.11 0.00 2.57
2496 3443 5.614308 TGCACCTCTTCAACATATGGATAG 58.386 41.667 7.80 0.00 0.00 2.08
2497 3444 5.628797 TGCACCTCTTCAACATATGGATA 57.371 39.130 7.80 0.00 0.00 2.59
2498 3445 4.508551 TGCACCTCTTCAACATATGGAT 57.491 40.909 7.80 0.00 0.00 3.41
2499 3446 3.998913 TGCACCTCTTCAACATATGGA 57.001 42.857 7.80 0.00 0.00 3.41
2500 3447 3.181493 GCTTGCACCTCTTCAACATATGG 60.181 47.826 7.80 0.00 0.00 2.74
2501 3448 3.181493 GGCTTGCACCTCTTCAACATATG 60.181 47.826 0.00 0.00 0.00 1.78
2502 3449 3.019564 GGCTTGCACCTCTTCAACATAT 58.980 45.455 0.00 0.00 0.00 1.78
2503 3450 2.436417 GGCTTGCACCTCTTCAACATA 58.564 47.619 0.00 0.00 0.00 2.29
2504 3451 1.251251 GGCTTGCACCTCTTCAACAT 58.749 50.000 0.00 0.00 0.00 2.71
2505 3452 1.165907 CGGCTTGCACCTCTTCAACA 61.166 55.000 0.00 0.00 0.00 3.33
2506 3453 1.576421 CGGCTTGCACCTCTTCAAC 59.424 57.895 0.00 0.00 0.00 3.18
2507 3454 1.600636 CCGGCTTGCACCTCTTCAA 60.601 57.895 0.00 0.00 0.00 2.69
2508 3455 2.032528 CCGGCTTGCACCTCTTCA 59.967 61.111 0.00 0.00 0.00 3.02
2509 3456 2.035442 GTCCGGCTTGCACCTCTTC 61.035 63.158 0.00 0.00 0.00 2.87
2510 3457 2.032681 GTCCGGCTTGCACCTCTT 59.967 61.111 0.00 0.00 0.00 2.85
2511 3458 4.021925 GGTCCGGCTTGCACCTCT 62.022 66.667 0.00 0.00 0.00 3.69
2512 3459 4.329545 TGGTCCGGCTTGCACCTC 62.330 66.667 10.37 0.00 0.00 3.85
2513 3460 4.643387 GTGGTCCGGCTTGCACCT 62.643 66.667 10.37 0.00 0.00 4.00
2515 3462 3.869473 TACGTGGTCCGGCTTGCAC 62.869 63.158 0.00 0.00 42.24 4.57
2516 3463 3.617735 TACGTGGTCCGGCTTGCA 61.618 61.111 0.00 0.00 42.24 4.08
2517 3464 3.116531 GTACGTGGTCCGGCTTGC 61.117 66.667 0.00 0.00 42.24 4.01
2518 3465 2.433664 GGTACGTGGTCCGGCTTG 60.434 66.667 0.00 0.00 42.24 4.01
2519 3466 3.698820 GGGTACGTGGTCCGGCTT 61.699 66.667 0.00 0.00 42.24 4.35
2521 3468 4.446413 CTGGGTACGTGGTCCGGC 62.446 72.222 0.00 0.00 42.24 6.13
2522 3469 4.446413 GCTGGGTACGTGGTCCGG 62.446 72.222 0.00 0.00 42.24 5.14
2523 3470 4.446413 GGCTGGGTACGTGGTCCG 62.446 72.222 0.00 0.00 44.03 4.79
2524 3471 3.001406 AGGCTGGGTACGTGGTCC 61.001 66.667 0.00 0.00 0.00 4.46
2525 3472 1.946475 GAGAGGCTGGGTACGTGGTC 61.946 65.000 0.00 0.00 0.00 4.02
2526 3473 1.982938 GAGAGGCTGGGTACGTGGT 60.983 63.158 0.00 0.00 0.00 4.16
2527 3474 1.982395 TGAGAGGCTGGGTACGTGG 60.982 63.158 0.00 0.00 0.00 4.94
2528 3475 1.215647 GTGAGAGGCTGGGTACGTG 59.784 63.158 0.00 0.00 0.00 4.49
2529 3476 1.982938 GGTGAGAGGCTGGGTACGT 60.983 63.158 0.00 0.00 0.00 3.57
2530 3477 0.395311 TAGGTGAGAGGCTGGGTACG 60.395 60.000 0.00 0.00 0.00 3.67
2531 3478 1.757699 CTTAGGTGAGAGGCTGGGTAC 59.242 57.143 0.00 0.00 0.00 3.34
2532 3479 1.965318 GCTTAGGTGAGAGGCTGGGTA 60.965 57.143 0.00 0.00 0.00 3.69
2533 3480 1.268283 GCTTAGGTGAGAGGCTGGGT 61.268 60.000 0.00 0.00 0.00 4.51
2534 3481 1.524482 GCTTAGGTGAGAGGCTGGG 59.476 63.158 0.00 0.00 0.00 4.45
2535 3482 0.980231 AGGCTTAGGTGAGAGGCTGG 60.980 60.000 0.00 0.00 45.74 4.85
2536 3483 1.781786 TAGGCTTAGGTGAGAGGCTG 58.218 55.000 9.36 0.00 46.71 4.85
2538 3485 1.831736 TGTTAGGCTTAGGTGAGAGGC 59.168 52.381 0.00 0.00 38.61 4.70
2539 3486 3.964031 AGATGTTAGGCTTAGGTGAGAGG 59.036 47.826 0.00 0.00 0.00 3.69
2540 3487 6.716934 TTAGATGTTAGGCTTAGGTGAGAG 57.283 41.667 0.00 0.00 0.00 3.20
2541 3488 6.407074 GCTTTAGATGTTAGGCTTAGGTGAGA 60.407 42.308 0.00 0.00 0.00 3.27
2542 3489 5.755861 GCTTTAGATGTTAGGCTTAGGTGAG 59.244 44.000 0.00 0.00 0.00 3.51
2543 3490 5.396436 GGCTTTAGATGTTAGGCTTAGGTGA 60.396 44.000 0.00 0.00 0.00 4.02
2544 3491 4.816925 GGCTTTAGATGTTAGGCTTAGGTG 59.183 45.833 0.00 0.00 0.00 4.00
2545 3492 4.443034 CGGCTTTAGATGTTAGGCTTAGGT 60.443 45.833 0.00 0.00 32.77 3.08
2546 3493 4.058817 CGGCTTTAGATGTTAGGCTTAGG 58.941 47.826 0.00 0.00 32.77 2.69
2547 3494 4.058817 CCGGCTTTAGATGTTAGGCTTAG 58.941 47.826 0.00 0.00 32.77 2.18
2548 3495 3.707611 TCCGGCTTTAGATGTTAGGCTTA 59.292 43.478 0.00 0.00 32.77 3.09
2549 3496 2.504175 TCCGGCTTTAGATGTTAGGCTT 59.496 45.455 0.00 0.00 32.77 4.35
2550 3497 2.103263 CTCCGGCTTTAGATGTTAGGCT 59.897 50.000 0.00 0.00 32.77 4.58
2551 3498 2.484889 CTCCGGCTTTAGATGTTAGGC 58.515 52.381 0.00 0.00 0.00 3.93
2552 3499 2.807108 GCCTCCGGCTTTAGATGTTAGG 60.807 54.545 0.00 0.00 46.69 2.69
2553 3500 2.484889 GCCTCCGGCTTTAGATGTTAG 58.515 52.381 0.00 0.00 46.69 2.34
2554 3501 2.614829 GCCTCCGGCTTTAGATGTTA 57.385 50.000 0.00 0.00 46.69 2.41
2555 3502 3.478540 GCCTCCGGCTTTAGATGTT 57.521 52.632 0.00 0.00 46.69 2.71
2572 3519 3.626924 ATATGGCTCGGTCGGGGC 61.627 66.667 9.93 9.93 42.02 5.80
2573 3520 2.343758 CATATGGCTCGGTCGGGG 59.656 66.667 0.00 0.00 0.00 5.73
2574 3521 2.357517 GCATATGGCTCGGTCGGG 60.358 66.667 4.56 0.00 40.25 5.14
2575 3522 2.357517 GGCATATGGCTCGGTCGG 60.358 66.667 21.32 0.00 44.01 4.79
2576 3523 1.665916 CTGGCATATGGCTCGGTCG 60.666 63.158 27.41 7.60 44.01 4.79
2577 3524 1.302033 CCTGGCATATGGCTCGGTC 60.302 63.158 27.41 0.00 44.01 4.79
2578 3525 2.044806 GACCTGGCATATGGCTCGGT 62.045 60.000 29.99 29.99 43.48 4.69
2579 3526 1.302033 GACCTGGCATATGGCTCGG 60.302 63.158 27.41 26.42 44.01 4.63
2580 3527 1.302033 GGACCTGGCATATGGCTCG 60.302 63.158 27.41 19.40 44.01 5.03
2581 3528 1.302033 CGGACCTGGCATATGGCTC 60.302 63.158 27.41 17.46 44.01 4.70
2582 3529 1.762522 CTCGGACCTGGCATATGGCT 61.763 60.000 27.41 9.90 44.01 4.75
2583 3530 1.302033 CTCGGACCTGGCATATGGC 60.302 63.158 21.76 21.76 43.74 4.40
2584 3531 1.372683 CCTCGGACCTGGCATATGG 59.627 63.158 4.56 0.00 0.00 2.74
2591 3538 1.966451 GTTTGTGCCTCGGACCTGG 60.966 63.158 0.00 0.00 0.00 4.45
2592 3539 1.966451 GGTTTGTGCCTCGGACCTG 60.966 63.158 0.00 0.00 0.00 4.00
2593 3540 2.430367 GGTTTGTGCCTCGGACCT 59.570 61.111 0.00 0.00 0.00 3.85
2594 3541 3.047877 CGGTTTGTGCCTCGGACC 61.048 66.667 0.00 0.00 0.00 4.46
2595 3542 3.047877 CCGGTTTGTGCCTCGGAC 61.048 66.667 0.00 0.00 44.69 4.79
2596 3543 3.524648 GACCGGTTTGTGCCTCGGA 62.525 63.158 9.42 0.00 44.69 4.55
2597 3544 3.047877 GACCGGTTTGTGCCTCGG 61.048 66.667 9.42 0.00 46.95 4.63
2598 3545 3.047877 GGACCGGTTTGTGCCTCG 61.048 66.667 9.42 0.00 0.00 4.63
2599 3546 3.047877 CGGACCGGTTTGTGCCTC 61.048 66.667 9.42 0.00 0.00 4.70
2600 3547 3.552384 TCGGACCGGTTTGTGCCT 61.552 61.111 15.25 0.00 0.00 4.75
2601 3548 3.351416 GTCGGACCGGTTTGTGCC 61.351 66.667 15.25 3.33 0.00 5.01
2602 3549 3.708734 CGTCGGACCGGTTTGTGC 61.709 66.667 15.25 0.00 0.00 4.57
2603 3550 3.708734 GCGTCGGACCGGTTTGTG 61.709 66.667 15.25 0.00 0.00 3.33
2611 3558 4.796231 ATGTGAGCGCGTCGGACC 62.796 66.667 8.43 0.00 0.00 4.46
2612 3559 3.545481 CATGTGAGCGCGTCGGAC 61.545 66.667 8.43 0.00 0.00 4.79
2613 3560 4.050934 ACATGTGAGCGCGTCGGA 62.051 61.111 8.43 0.00 0.00 4.55
2614 3561 3.842126 CACATGTGAGCGCGTCGG 61.842 66.667 21.64 0.00 0.00 4.79
2615 3562 3.059472 GACACATGTGAGCGCGTCG 62.059 63.158 31.94 2.46 0.00 5.12
2616 3563 1.354337 ATGACACATGTGAGCGCGTC 61.354 55.000 31.94 17.54 0.00 5.19
2617 3564 1.354337 GATGACACATGTGAGCGCGT 61.354 55.000 31.94 17.56 0.00 6.01
2618 3565 1.346197 GATGACACATGTGAGCGCG 59.654 57.895 31.94 0.00 0.00 6.86
2619 3566 0.095935 GTGATGACACATGTGAGCGC 59.904 55.000 31.94 15.96 45.32 5.92
2629 3576 2.271800 GGAAGATGACGGTGATGACAC 58.728 52.381 0.00 0.00 45.27 3.67
2630 3577 1.899142 TGGAAGATGACGGTGATGACA 59.101 47.619 0.00 0.00 0.00 3.58
2631 3578 2.093973 AGTGGAAGATGACGGTGATGAC 60.094 50.000 0.00 0.00 0.00 3.06
2632 3579 2.094026 CAGTGGAAGATGACGGTGATGA 60.094 50.000 0.00 0.00 0.00 2.92
2633 3580 2.274437 CAGTGGAAGATGACGGTGATG 58.726 52.381 0.00 0.00 0.00 3.07
2634 3581 1.208052 CCAGTGGAAGATGACGGTGAT 59.792 52.381 1.68 0.00 0.00 3.06
2635 3582 0.608130 CCAGTGGAAGATGACGGTGA 59.392 55.000 1.68 0.00 0.00 4.02
2636 3583 0.321671 ACCAGTGGAAGATGACGGTG 59.678 55.000 18.40 0.00 0.00 4.94
2637 3584 0.608640 GACCAGTGGAAGATGACGGT 59.391 55.000 18.40 0.00 0.00 4.83
2638 3585 0.108138 GGACCAGTGGAAGATGACGG 60.108 60.000 18.40 0.00 0.00 4.79
2639 3586 0.608130 TGGACCAGTGGAAGATGACG 59.392 55.000 18.40 0.00 0.00 4.35
2640 3587 2.503356 AGATGGACCAGTGGAAGATGAC 59.497 50.000 18.40 1.01 0.00 3.06
2641 3588 2.837947 AGATGGACCAGTGGAAGATGA 58.162 47.619 18.40 0.00 0.00 2.92
2642 3589 3.054875 TGAAGATGGACCAGTGGAAGATG 60.055 47.826 18.40 0.00 0.00 2.90
2643 3590 3.184628 TGAAGATGGACCAGTGGAAGAT 58.815 45.455 18.40 3.59 0.00 2.40
2644 3591 2.568956 CTGAAGATGGACCAGTGGAAGA 59.431 50.000 18.40 0.00 0.00 2.87
2645 3592 2.568956 TCTGAAGATGGACCAGTGGAAG 59.431 50.000 18.40 0.00 0.00 3.46
2646 3593 2.568956 CTCTGAAGATGGACCAGTGGAA 59.431 50.000 18.40 0.74 0.00 3.53
2647 3594 2.182827 CTCTGAAGATGGACCAGTGGA 58.817 52.381 18.40 0.00 0.00 4.02
2648 3595 1.406614 GCTCTGAAGATGGACCAGTGG 60.407 57.143 7.91 7.91 0.00 4.00
2649 3596 1.277273 TGCTCTGAAGATGGACCAGTG 59.723 52.381 0.00 0.00 0.00 3.66
2650 3597 1.554160 CTGCTCTGAAGATGGACCAGT 59.446 52.381 0.00 0.00 0.00 4.00
2651 3598 1.829849 TCTGCTCTGAAGATGGACCAG 59.170 52.381 0.00 0.00 0.00 4.00
2652 3599 1.942776 TCTGCTCTGAAGATGGACCA 58.057 50.000 0.00 0.00 0.00 4.02
2653 3600 3.118482 TCAATCTGCTCTGAAGATGGACC 60.118 47.826 0.00 0.00 34.59 4.46
2654 3601 4.121317 CTCAATCTGCTCTGAAGATGGAC 58.879 47.826 0.00 0.00 34.59 4.02
2655 3602 3.134262 CCTCAATCTGCTCTGAAGATGGA 59.866 47.826 0.00 0.00 34.59 3.41
2656 3603 3.118334 ACCTCAATCTGCTCTGAAGATGG 60.118 47.826 0.00 0.00 34.59 3.51
2657 3604 3.872182 CACCTCAATCTGCTCTGAAGATG 59.128 47.826 0.00 0.00 34.59 2.90
2658 3605 3.518705 ACACCTCAATCTGCTCTGAAGAT 59.481 43.478 0.00 0.00 35.89 2.40
2659 3606 2.902486 ACACCTCAATCTGCTCTGAAGA 59.098 45.455 0.00 0.00 0.00 2.87
2660 3607 3.260740 GACACCTCAATCTGCTCTGAAG 58.739 50.000 0.00 0.00 0.00 3.02
2661 3608 2.634453 TGACACCTCAATCTGCTCTGAA 59.366 45.455 0.00 0.00 0.00 3.02
2662 3609 2.250924 TGACACCTCAATCTGCTCTGA 58.749 47.619 0.00 0.00 0.00 3.27
2663 3610 2.756840 TGACACCTCAATCTGCTCTG 57.243 50.000 0.00 0.00 0.00 3.35
2664 3611 3.996921 ATTGACACCTCAATCTGCTCT 57.003 42.857 0.00 0.00 42.54 4.09
2670 3617 9.301448 GGACCTACCTAGATTGACACCTCAATC 62.301 48.148 13.36 13.36 46.24 2.67
2671 3618 7.597228 GGACCTACCTAGATTGACACCTCAAT 61.597 46.154 0.00 0.00 41.34 2.57
2672 3619 4.684724 ACCTACCTAGATTGACACCTCAA 58.315 43.478 0.00 0.00 40.77 3.02
2673 3620 4.279145 GACCTACCTAGATTGACACCTCA 58.721 47.826 0.00 0.00 0.00 3.86
2674 3621 3.637694 GGACCTACCTAGATTGACACCTC 59.362 52.174 0.00 0.00 35.41 3.85
2675 3622 3.644335 GGACCTACCTAGATTGACACCT 58.356 50.000 0.00 0.00 35.41 4.00
2688 3635 2.857744 CGATGGCGGAGGACCTACC 61.858 68.421 0.00 0.00 39.35 3.18
2689 3636 2.728817 CGATGGCGGAGGACCTAC 59.271 66.667 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.