Multiple sequence alignment - TraesCS2B01G310900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G310900 chr2B 100.000 6630 0 0 1 6630 444540971 444547600 0.000000e+00 12244.0
1 TraesCS2B01G310900 chr2B 93.773 273 17 0 6358 6630 444604177 444604449 1.720000e-110 411.0
2 TraesCS2B01G310900 chr2B 81.875 320 33 11 5900 6205 752918415 752918107 5.130000e-61 246.0
3 TraesCS2B01G310900 chr2B 95.349 129 5 1 3009 3136 142446632 142446760 3.130000e-48 204.0
4 TraesCS2B01G310900 chr2B 86.154 65 9 0 5902 5966 385092327 385092263 3.320000e-08 71.3
5 TraesCS2B01G310900 chr2A 92.964 3155 148 27 2770 5903 507070923 507074024 0.000000e+00 4529.0
6 TraesCS2B01G310900 chr2A 93.965 2767 105 23 3 2757 507068137 507070853 0.000000e+00 4128.0
7 TraesCS2B01G310900 chr2A 75.637 353 68 14 5901 6239 622271643 622271991 6.880000e-35 159.0
8 TraesCS2B01G310900 chr2D 96.145 2750 97 7 3129 5873 374106923 374109668 0.000000e+00 4482.0
9 TraesCS2B01G310900 chr2D 95.204 2523 85 15 251 2757 374104109 374106611 0.000000e+00 3956.0
10 TraesCS2B01G310900 chr2D 94.332 247 12 1 2770 3016 374106681 374106925 1.750000e-100 377.0
11 TraesCS2B01G310900 chr2D 73.466 652 122 36 5903 6524 305994817 305995447 1.460000e-46 198.0
12 TraesCS2B01G310900 chr3B 82.310 684 102 10 5901 6573 162518560 162517885 5.770000e-160 575.0
13 TraesCS2B01G310900 chr3B 76.471 459 70 17 5905 6340 414041636 414042079 1.450000e-51 215.0
14 TraesCS2B01G310900 chr3B 77.372 274 50 7 5974 6239 465959883 465960152 1.150000e-32 152.0
15 TraesCS2B01G310900 chr7D 80.774 749 94 13 5902 6628 233652668 233653388 2.100000e-149 540.0
16 TraesCS2B01G310900 chr7D 82.035 462 58 14 5901 6341 471562190 471562647 2.920000e-98 370.0
17 TraesCS2B01G310900 chr5B 83.636 495 61 8 6147 6630 669556391 669556876 1.310000e-121 448.0
18 TraesCS2B01G310900 chr5B 95.489 133 4 2 3007 3139 692876509 692876639 1.870000e-50 211.0
19 TraesCS2B01G310900 chr5B 95.276 127 5 1 3012 3137 402870299 402870173 4.050000e-47 200.0
20 TraesCS2B01G310900 chr5D 79.155 686 106 24 5905 6569 360407120 360406451 2.190000e-119 440.0
21 TraesCS2B01G310900 chr5D 82.988 241 36 5 5977 6215 550396797 550397034 5.210000e-51 213.0
22 TraesCS2B01G310900 chr3D 78.378 703 106 19 5898 6578 522769133 522768455 1.330000e-111 414.0
23 TraesCS2B01G310900 chr7A 77.644 747 117 23 5904 6628 245466182 245465464 6.190000e-110 409.0
24 TraesCS2B01G310900 chr7A 80.508 354 57 9 5898 6243 629050388 629050737 1.830000e-65 261.0
25 TraesCS2B01G310900 chr4A 76.494 753 128 25 5901 6629 707662817 707662090 1.360000e-96 364.0
26 TraesCS2B01G310900 chr4A 76.494 753 128 27 5901 6629 707690522 707689795 1.360000e-96 364.0
27 TraesCS2B01G310900 chr4A 93.985 133 6 2 3007 3139 620013491 620013621 4.050000e-47 200.0
28 TraesCS2B01G310900 chr1D 76.934 698 121 16 5901 6578 192364756 192365433 1.760000e-95 361.0
29 TraesCS2B01G310900 chr1D 96.032 126 4 1 3008 3132 442675649 442675524 3.130000e-48 204.0
30 TraesCS2B01G310900 chrUn 80.978 368 48 15 5899 6248 238405358 238404995 8.470000e-69 272.0
31 TraesCS2B01G310900 chrUn 80.978 368 48 15 5899 6248 293801908 293801545 8.470000e-69 272.0
32 TraesCS2B01G310900 chrUn 94.574 129 7 0 3006 3134 87827518 87827390 4.050000e-47 200.0
33 TraesCS2B01G310900 chrUn 94.574 129 7 0 3006 3134 309972563 309972435 4.050000e-47 200.0
34 TraesCS2B01G310900 chr6D 75.038 653 119 29 5999 6629 136730460 136731090 5.100000e-66 263.0
35 TraesCS2B01G310900 chr1B 95.968 124 5 0 3015 3138 613245929 613246052 1.130000e-47 202.0
36 TraesCS2B01G310900 chr1B 78.426 343 47 16 5950 6284 480481411 480481734 1.460000e-46 198.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G310900 chr2B 444540971 444547600 6629 False 12244.000000 12244 100.0000 1 6630 1 chr2B.!!$F2 6629
1 TraesCS2B01G310900 chr2A 507068137 507074024 5887 False 4328.500000 4529 93.4645 3 5903 2 chr2A.!!$F2 5900
2 TraesCS2B01G310900 chr2D 374104109 374109668 5559 False 2938.333333 4482 95.2270 251 5873 3 chr2D.!!$F2 5622
3 TraesCS2B01G310900 chr3B 162517885 162518560 675 True 575.000000 575 82.3100 5901 6573 1 chr3B.!!$R1 672
4 TraesCS2B01G310900 chr7D 233652668 233653388 720 False 540.000000 540 80.7740 5902 6628 1 chr7D.!!$F1 726
5 TraesCS2B01G310900 chr5D 360406451 360407120 669 True 440.000000 440 79.1550 5905 6569 1 chr5D.!!$R1 664
6 TraesCS2B01G310900 chr3D 522768455 522769133 678 True 414.000000 414 78.3780 5898 6578 1 chr3D.!!$R1 680
7 TraesCS2B01G310900 chr7A 245465464 245466182 718 True 409.000000 409 77.6440 5904 6628 1 chr7A.!!$R1 724
8 TraesCS2B01G310900 chr4A 707662090 707662817 727 True 364.000000 364 76.4940 5901 6629 1 chr4A.!!$R1 728
9 TraesCS2B01G310900 chr4A 707689795 707690522 727 True 364.000000 364 76.4940 5901 6629 1 chr4A.!!$R2 728
10 TraesCS2B01G310900 chr1D 192364756 192365433 677 False 361.000000 361 76.9340 5901 6578 1 chr1D.!!$F1 677
11 TraesCS2B01G310900 chr6D 136730460 136731090 630 False 263.000000 263 75.0380 5999 6629 1 chr6D.!!$F1 630

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
236 238 1.298157 GCACTGCGTTGTCATAGCCA 61.298 55.000 0.00 0.0 0.00 4.75 F
1065 1078 1.002366 CTGGATGGAGAAACGAAGCG 58.998 55.000 0.00 0.0 0.00 4.68 F
1278 1291 1.065564 GCTTCTTCTGATGGGAGCACT 60.066 52.381 11.85 0.0 0.00 4.40 F
1616 1629 1.270947 TGTCACGGTAAATGTCACCCC 60.271 52.381 0.00 0.0 31.96 4.95 F
3029 3108 0.179009 TATGTACTCCCTCCGTCCGG 60.179 60.000 0.00 0.0 0.00 5.14 F
3037 3116 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.0 44.66 2.24 F
3042 3121 1.135315 CCGTCCGGAAATACTTGTCGA 60.135 52.381 5.23 0.0 37.50 4.20 F
4986 5088 1.057275 TACCTGTTGCCTGGGTGTCA 61.057 55.000 0.00 0.0 34.86 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1437 1450 0.182775 GCACCGGGGACATCCTTATT 59.817 55.000 8.67 0.0 35.95 1.40 R
2908 2987 0.249398 GCCACCATCTCCGTAACTGT 59.751 55.000 0.00 0.0 0.00 3.55 R
2952 3031 2.168106 TGGCATCACACAAAACTTGCTT 59.832 40.909 0.00 0.0 0.00 3.91 R
3112 3191 2.544844 ATACTCCCTCCGTCCAGAAA 57.455 50.000 0.00 0.0 0.00 2.52 R
4964 5066 1.063567 ACACCCAGGCAACAGGTAAAA 60.064 47.619 0.00 0.0 43.06 1.52 R
4986 5088 1.247567 CGCCCTGGAAACATGAAAGT 58.752 50.000 0.00 0.0 41.51 2.66 R
5149 5252 6.708054 GGTCTATGACAGAACCAAATATCAGG 59.292 42.308 0.07 0.0 34.60 3.86 R
6412 6584 0.254747 AATGGCGGCAGTAAAGGCTA 59.745 50.000 19.29 0.0 0.00 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.785453 GAGGCAGGGGAGCAACCG 62.785 72.222 0.00 0.00 40.11 4.44
54 55 4.748144 CCACTCCCCCTTGCAGGC 62.748 72.222 0.00 0.00 32.73 4.85
64 65 4.408821 TTGCAGGCGCGGGAATCT 62.409 61.111 8.83 0.00 42.97 2.40
65 66 3.918253 TTGCAGGCGCGGGAATCTT 62.918 57.895 8.83 0.00 42.97 2.40
80 81 2.172483 ATCTTGCGACTGCCTTCGGT 62.172 55.000 6.23 0.00 41.78 4.69
103 104 2.428085 GCGAGGGAGGAGGAAGGAC 61.428 68.421 0.00 0.00 0.00 3.85
134 135 2.185310 GATGGCGGACAGAGTTGGGT 62.185 60.000 0.00 0.00 0.00 4.51
179 181 2.775911 TCCTTGAGGAGACAAGCATG 57.224 50.000 0.00 0.00 43.83 4.06
198 200 8.302438 CAAGCATGATATTTTCTATTCCCCTTC 58.698 37.037 0.00 0.00 0.00 3.46
207 209 4.927267 TCTATTCCCCTTCTCTGCAAAA 57.073 40.909 0.00 0.00 0.00 2.44
210 212 4.813750 ATTCCCCTTCTCTGCAAAAATG 57.186 40.909 0.00 0.00 0.00 2.32
224 226 3.361917 GCAAAAATGTTTGTAGCACTGCG 60.362 43.478 10.07 0.00 45.06 5.18
236 238 1.298157 GCACTGCGTTGTCATAGCCA 61.298 55.000 0.00 0.00 0.00 4.75
242 244 1.396996 GCGTTGTCATAGCCACGATTT 59.603 47.619 0.00 0.00 0.00 2.17
276 280 7.362142 GCTTTTAGATAGTGCTAGCCAAAACTT 60.362 37.037 13.29 0.37 0.00 2.66
301 308 4.851558 GCTGCTACAAATAAAACAACGAGG 59.148 41.667 0.00 0.00 0.00 4.63
373 380 4.612259 GCAACATGACAACATCTCACACTC 60.612 45.833 0.00 0.00 34.15 3.51
377 384 1.723542 GACAACATCTCACACTCTGCG 59.276 52.381 0.00 0.00 0.00 5.18
404 411 9.656323 AGAAATCTAACACCTGGTGATAGTATA 57.344 33.333 31.08 19.49 39.09 1.47
449 456 6.186957 TGCCACCACTAATTGACATCTTTAT 58.813 36.000 0.00 0.00 0.00 1.40
480 487 7.649306 GCAAGGGACAATTATACAATTCATCAC 59.351 37.037 0.00 0.00 31.82 3.06
1065 1078 1.002366 CTGGATGGAGAAACGAAGCG 58.998 55.000 0.00 0.00 0.00 4.68
1095 1108 2.423446 GCTACATCTGGGAGGGCG 59.577 66.667 0.00 0.00 0.00 6.13
1128 1141 2.157668 CGTTCCATTTTCAGGTCACTCG 59.842 50.000 0.00 0.00 0.00 4.18
1130 1143 1.071542 TCCATTTTCAGGTCACTCGCA 59.928 47.619 0.00 0.00 0.00 5.10
1132 1145 1.872952 CATTTTCAGGTCACTCGCACA 59.127 47.619 0.00 0.00 0.00 4.57
1278 1291 1.065564 GCTTCTTCTGATGGGAGCACT 60.066 52.381 11.85 0.00 0.00 4.40
1437 1450 1.302431 CAACACCGATGTCCAGGCA 60.302 57.895 0.00 0.00 38.45 4.75
1616 1629 1.270947 TGTCACGGTAAATGTCACCCC 60.271 52.381 0.00 0.00 31.96 4.95
1639 1652 5.069119 CCCCTTCTAAATAAATGGCTTGACC 59.931 44.000 0.00 0.00 39.84 4.02
1667 1681 7.402054 TGAAACTATCATGTTTATGTGGAGGT 58.598 34.615 0.00 0.00 39.86 3.85
1668 1682 8.544622 TGAAACTATCATGTTTATGTGGAGGTA 58.455 33.333 0.00 0.00 39.86 3.08
1776 1790 3.659841 TGCCAAGTCCATGGGTATACTA 58.340 45.455 13.02 0.00 41.01 1.82
1923 1937 3.953612 TGTTGTCTGCTGTTTCTCCAAAT 59.046 39.130 0.00 0.00 0.00 2.32
1980 1994 5.652014 TGATATTCTTTGGCAAGGAATTCGT 59.348 36.000 33.28 22.55 0.00 3.85
2041 2055 4.722194 TGCATTTGAAACTCTTATCACGC 58.278 39.130 0.00 0.00 0.00 5.34
2106 2122 5.995446 ACAGAGATTTAATGTCCTCTTCCC 58.005 41.667 0.00 0.00 34.08 3.97
2234 2250 5.645497 ACATCTGAAATAAGCTTCTGGTGTC 59.355 40.000 0.00 0.00 41.88 3.67
2304 2323 6.697019 TCTTTGCAAGTTGAATTCTAGTTTGC 59.303 34.615 21.43 21.43 0.00 3.68
2305 2324 5.512753 TGCAAGTTGAATTCTAGTTTGCA 57.487 34.783 24.42 24.42 0.00 4.08
2306 2325 5.280945 TGCAAGTTGAATTCTAGTTTGCAC 58.719 37.500 24.42 10.94 0.00 4.57
2307 2326 5.067674 TGCAAGTTGAATTCTAGTTTGCACT 59.932 36.000 24.42 3.87 36.99 4.40
2308 2327 5.979517 GCAAGTTGAATTCTAGTTTGCACTT 59.020 36.000 22.42 7.23 34.06 3.16
2309 2328 6.476706 GCAAGTTGAATTCTAGTTTGCACTTT 59.523 34.615 22.42 0.00 34.06 2.66
2310 2329 7.515684 GCAAGTTGAATTCTAGTTTGCACTTTG 60.516 37.037 22.42 8.38 34.06 2.77
2390 2409 8.515414 GTTAAATAGAGAAAAGTGATTGCCTGT 58.485 33.333 0.00 0.00 0.00 4.00
2424 2443 7.441157 TGATGTTGAGTAGTGTTCGAAGATTTT 59.559 33.333 0.00 0.00 35.04 1.82
2531 2550 8.607713 TGGTACTCCAAGAAAAGTATTATGGAA 58.392 33.333 0.00 0.00 41.25 3.53
2532 2551 9.628500 GGTACTCCAAGAAAAGTATTATGGAAT 57.372 33.333 0.00 0.00 36.59 3.01
2612 2631 7.678947 AACTTGGAGAGAATTAACTGTCATG 57.321 36.000 0.00 0.00 32.82 3.07
2637 2656 6.931790 ATAAGCTCAGATCTATGGTCACAT 57.068 37.500 0.00 0.00 41.13 3.21
2639 2658 6.931790 AAGCTCAGATCTATGGTCACATAT 57.068 37.500 0.00 0.00 38.80 1.78
2703 2722 4.119862 GCTGCAGAGATAACCGTGAATAA 58.880 43.478 20.43 0.00 0.00 1.40
2721 2740 8.499162 CGTGAATAAAATGCTATCTCCCTAAAG 58.501 37.037 0.00 0.00 0.00 1.85
2751 2770 1.841302 TTGCTCAGGAACAGCCGGAT 61.841 55.000 5.05 0.00 40.21 4.18
2757 2776 4.804261 GCTCAGGAACAGCCGGATATTAAT 60.804 45.833 5.05 0.00 40.21 1.40
2758 2777 5.304686 TCAGGAACAGCCGGATATTAATT 57.695 39.130 5.05 0.00 43.43 1.40
2759 2778 5.063204 TCAGGAACAGCCGGATATTAATTG 58.937 41.667 5.05 0.00 43.43 2.32
2760 2779 4.821805 CAGGAACAGCCGGATATTAATTGT 59.178 41.667 5.05 0.00 43.43 2.71
2761 2780 5.299279 CAGGAACAGCCGGATATTAATTGTT 59.701 40.000 5.05 0.00 43.43 2.83
2763 2782 5.298276 GGAACAGCCGGATATTAATTGTTCA 59.702 40.000 20.37 0.00 42.69 3.18
2764 2783 6.377327 AACAGCCGGATATTAATTGTTCAG 57.623 37.500 5.05 0.00 0.00 3.02
2765 2784 4.821805 ACAGCCGGATATTAATTGTTCAGG 59.178 41.667 5.05 0.93 0.00 3.86
2767 2786 3.568007 GCCGGATATTAATTGTTCAGGCA 59.432 43.478 21.13 0.00 45.24 4.75
2768 2787 4.320494 GCCGGATATTAATTGTTCAGGCAG 60.320 45.833 21.13 0.00 45.24 4.85
2842 2921 7.450014 ACATCATCGAGTAATTCTCTGTATCCT 59.550 37.037 0.00 0.00 40.75 3.24
2843 2922 7.441890 TCATCGAGTAATTCTCTGTATCCTC 57.558 40.000 0.00 0.00 40.75 3.71
2844 2923 6.431543 TCATCGAGTAATTCTCTGTATCCTCC 59.568 42.308 0.00 0.00 40.75 4.30
2908 2987 2.500098 GCTATGGGGGAGCGAATATGTA 59.500 50.000 0.00 0.00 0.00 2.29
2915 2994 4.304939 GGGGAGCGAATATGTACAGTTAC 58.695 47.826 0.33 0.00 0.00 2.50
2952 3031 1.953686 GGCCTCAACTGTTGCAAAGTA 59.046 47.619 15.52 0.00 0.00 2.24
3026 3105 6.164176 CCAATTTATATGTACTCCCTCCGTC 58.836 44.000 0.00 0.00 0.00 4.79
3028 3107 1.906990 ATATGTACTCCCTCCGTCCG 58.093 55.000 0.00 0.00 0.00 4.79
3029 3108 0.179009 TATGTACTCCCTCCGTCCGG 60.179 60.000 0.00 0.00 0.00 5.14
3032 3111 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
3037 3116 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
3042 3121 1.135315 CCGTCCGGAAATACTTGTCGA 60.135 52.381 5.23 0.00 37.50 4.20
3045 3124 2.928116 GTCCGGAAATACTTGTCGAAGG 59.072 50.000 5.23 0.00 32.95 3.46
3050 3129 4.034048 CGGAAATACTTGTCGAAGGAATGG 59.966 45.833 0.00 0.00 32.95 3.16
3062 3141 6.016192 TGTCGAAGGAATGGATGTATCTAGAC 60.016 42.308 0.00 0.00 0.00 2.59
3063 3142 5.181433 TCGAAGGAATGGATGTATCTAGACG 59.819 44.000 0.00 0.00 0.00 4.18
3066 3145 7.148222 CGAAGGAATGGATGTATCTAGACGTAT 60.148 40.741 0.00 0.00 0.00 3.06
3067 3146 8.423906 AAGGAATGGATGTATCTAGACGTATT 57.576 34.615 0.00 0.00 0.00 1.89
3068 3147 8.423906 AGGAATGGATGTATCTAGACGTATTT 57.576 34.615 0.00 0.00 0.00 1.40
3112 3191 7.881643 TTTTATGCATTTTTGCGACAAGTAT 57.118 28.000 3.54 0.00 37.69 2.12
3116 3195 5.527951 TGCATTTTTGCGACAAGTATTTCT 58.472 33.333 0.00 0.00 37.69 2.52
3118 3197 5.164061 GCATTTTTGCGACAAGTATTTCTGG 60.164 40.000 0.00 0.00 0.00 3.86
3141 3220 6.444816 TGGACGGAGGGAGTATATGTATAGTA 59.555 42.308 0.00 0.00 0.00 1.82
3237 3316 3.853207 TCACTGGTACTCCTTAACACCT 58.147 45.455 0.00 0.00 34.23 4.00
3311 3392 8.893727 CAAAGCTAACACTGTATTAGGCTATTT 58.106 33.333 7.85 0.00 31.44 1.40
3364 3445 6.459066 TCTGTGGATGTATTATAGCTTCAGC 58.541 40.000 0.00 0.00 42.49 4.26
3380 3461 4.548726 GCTTCAGCATTGTTGTGTTTTTCG 60.549 41.667 0.22 0.00 41.59 3.46
3408 3489 9.467258 CTTATGGCATCAAGTTAATAACATTGG 57.533 33.333 1.65 0.00 0.00 3.16
3604 3688 9.574516 AATTGAGTTCAGTTTTCTTGGTATAGT 57.425 29.630 0.00 0.00 0.00 2.12
3655 3739 4.985409 GCCATACAGCTATACTTGACTGAC 59.015 45.833 0.00 0.00 34.25 3.51
3673 3757 9.936759 TTGACTGACTTGAATTTTAACCTTTTT 57.063 25.926 0.00 0.00 0.00 1.94
3838 3922 5.476091 TTTGACTTTGTTTGAGGTTGGTT 57.524 34.783 0.00 0.00 0.00 3.67
3855 3939 6.431234 AGGTTGGTTCATCTATTTGACAGTTC 59.569 38.462 0.00 0.00 0.00 3.01
3872 3956 6.263842 TGACAGTTCTTTGCTGATTTTCTCAT 59.736 34.615 0.00 0.00 37.40 2.90
4301 4387 7.499868 GTGTTCTACACGAGTTTCAATACTTC 58.500 38.462 0.00 0.00 39.53 3.01
4341 4427 6.267242 TGGAAGTTGGAAATGACATGATCAAA 59.733 34.615 0.00 0.00 41.93 2.69
4346 4432 7.654520 AGTTGGAAATGACATGATCAAACAAAG 59.345 33.333 17.63 0.00 41.93 2.77
4479 4570 3.813443 CCATGGACTTCAGGGTATCAAG 58.187 50.000 5.56 0.00 42.03 3.02
4537 4631 9.482175 AAGACCTATCTTCTAGTTACTGAATGT 57.518 33.333 0.00 0.00 41.63 2.71
4836 4938 5.599656 ACTGCAATTATTATGTTCCTGGCAT 59.400 36.000 0.00 0.00 0.00 4.40
4851 4953 3.887110 CCTGGCATCAATATTGCTCTTGA 59.113 43.478 10.76 0.00 40.03 3.02
4856 4958 5.227908 GCATCAATATTGCTCTTGAATGGG 58.772 41.667 10.76 0.00 35.20 4.00
4861 4963 2.205022 TTGCTCTTGAATGGGTGAGG 57.795 50.000 0.00 0.00 0.00 3.86
4896 4998 2.760092 CAGACCCACCCAAATATGTTGG 59.240 50.000 8.77 8.77 39.25 3.77
4925 5027 3.971245 CTCACAAGAGCTACTTCCCTT 57.029 47.619 0.00 0.00 36.61 3.95
4964 5066 2.237143 TCTCAAGGTCTCGGCATCAAAT 59.763 45.455 0.00 0.00 0.00 2.32
4986 5088 1.057275 TACCTGTTGCCTGGGTGTCA 61.057 55.000 0.00 0.00 34.86 3.58
5149 5252 6.480320 ACGATCTAGTTGATCCAAATGCTAAC 59.520 38.462 8.69 0.00 46.65 2.34
5179 5282 2.430694 TGGTTCTGTCATAGACCCATCG 59.569 50.000 0.00 0.00 42.46 3.84
5203 5306 2.983791 GGCCAGGTAAGCCGTACA 59.016 61.111 0.00 0.00 41.41 2.90
5210 5313 4.448210 CCAGGTAAGCCGTACACATATTT 58.552 43.478 0.00 0.00 40.50 1.40
5254 5357 7.916552 ACGCCTGTTCATTTTAAGTATGTATC 58.083 34.615 0.00 0.00 0.00 2.24
5328 5432 7.007099 GCGGAAGAAATACGATTAACTTGTTTG 59.993 37.037 0.00 0.00 37.68 2.93
5503 5607 3.745332 TTTCTTACGCGATCTCACGTA 57.255 42.857 15.93 8.01 43.35 3.57
5677 5782 1.548357 ATGCCTGTTGAGACTCGCCT 61.548 55.000 0.00 0.00 0.00 5.52
5697 5802 4.590918 CCTCTCGTAGATTAGATGCCCTA 58.409 47.826 0.00 0.00 33.89 3.53
5748 5853 5.557866 AGCTGTTTTCCGTAGAGGTTTTAT 58.442 37.500 0.00 0.00 41.99 1.40
5850 5955 4.278419 AGTGTTGTAGAAAATGTTCTGCCC 59.722 41.667 8.51 1.53 43.66 5.36
5863 5968 3.596066 CTGCCCTCCTGGTGTGTCG 62.596 68.421 0.00 0.00 36.04 4.35
5876 5981 2.277057 TGTCGTATCGCGTGCTCG 60.277 61.111 5.77 3.31 42.13 5.03
5885 5990 2.397252 GCGTGCTCGTCTTCATGC 59.603 61.111 10.18 0.00 37.94 4.06
5891 5996 1.450312 CTCGTCTTCATGCCCCCAC 60.450 63.158 0.00 0.00 0.00 4.61
5917 6022 3.192844 CCTACTTAGAGCAACTCCAACGA 59.807 47.826 0.00 0.00 0.00 3.85
5966 6072 5.048083 TGTCTGCTTTTTGTCTGTTTGAGTT 60.048 36.000 0.00 0.00 0.00 3.01
6042 6150 1.805428 CTGGCCTGACCCGTTTTTGG 61.805 60.000 3.32 0.00 37.83 3.28
6117 6231 1.830477 ACATTAATGCCGGCCACAAAT 59.170 42.857 26.77 15.27 0.00 2.32
6153 6267 6.263617 GTCCACCAGTCCACTTTTACATTAAA 59.736 38.462 0.00 0.00 0.00 1.52
6207 6362 3.429141 GCGTCCTCCTCGTCGTCA 61.429 66.667 0.00 0.00 0.00 4.35
6215 6370 3.518998 CTCGTCGTCATCGGGGCT 61.519 66.667 0.00 0.00 37.69 5.19
6528 6700 2.503356 CCCTGTTCCATGAGTAGCTCTT 59.497 50.000 0.00 0.00 0.00 2.85
6529 6701 3.054802 CCCTGTTCCATGAGTAGCTCTTT 60.055 47.826 0.00 0.00 0.00 2.52
6540 6712 2.307098 AGTAGCTCTTTGGCTTGATGGT 59.693 45.455 0.00 0.00 42.97 3.55
6629 6802 3.672295 GAGAGCACCTTGGCCTCCG 62.672 68.421 3.32 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 3.978571 GAGGCCTTCGGTTGCTCCC 62.979 68.421 6.77 0.00 0.00 4.30
103 104 4.547367 GCCATCGGTTCCCTCCCG 62.547 72.222 0.00 0.00 46.83 5.14
152 153 2.832129 TGTCTCCTCAAGGATACACCAC 59.168 50.000 11.96 0.00 43.57 4.16
175 176 7.887495 AGAGAAGGGGAATAGAAAATATCATGC 59.113 37.037 0.00 0.00 0.00 4.06
179 181 7.227156 TGCAGAGAAGGGGAATAGAAAATATC 58.773 38.462 0.00 0.00 0.00 1.63
198 200 5.174398 CAGTGCTACAAACATTTTTGCAGAG 59.826 40.000 8.46 3.71 45.32 3.35
207 209 2.357637 ACAACGCAGTGCTACAAACATT 59.642 40.909 14.33 0.00 45.00 2.71
210 212 1.329292 TGACAACGCAGTGCTACAAAC 59.671 47.619 14.33 1.16 45.00 2.93
218 220 0.443869 GTGGCTATGACAACGCAGTG 59.556 55.000 2.36 0.00 45.00 3.66
224 226 6.781138 TCATTTAAATCGTGGCTATGACAAC 58.219 36.000 0.00 0.00 0.00 3.32
242 244 8.993121 GCTAGCACTATCTAAAAGCATCATTTA 58.007 33.333 10.63 0.00 0.00 1.40
276 280 5.822278 TCGTTGTTTTATTTGTAGCAGCAA 58.178 33.333 0.00 0.00 0.00 3.91
301 308 0.667993 TGTAGCAAACTGTTGGCTGC 59.332 50.000 28.28 26.77 35.10 5.25
373 380 2.932614 CCAGGTGTTAGATTTCTCGCAG 59.067 50.000 0.00 0.00 0.00 5.18
377 384 6.879400 ACTATCACCAGGTGTTAGATTTCTC 58.121 40.000 32.01 0.00 37.78 2.87
404 411 0.472471 TTCGTTTGCCTCCTTGTCCT 59.528 50.000 0.00 0.00 0.00 3.85
449 456 9.555727 GAATTGTATAATTGTCCCTTGCTACTA 57.444 33.333 1.75 0.00 36.66 1.82
480 487 5.691754 GCTTCCAAAACTGAATTTAGTGGTG 59.308 40.000 3.30 5.30 32.15 4.17
585 598 1.486211 CGGAGGTGGTAGAATCTGGT 58.514 55.000 0.00 0.00 0.00 4.00
749 762 0.903454 AGGTCAGACCCTTACCACGG 60.903 60.000 16.72 0.00 39.75 4.94
960 973 1.752358 GCAGAGGCGGATCCAGATGA 61.752 60.000 13.41 0.00 37.29 2.92
1044 1057 1.339151 GCTTCGTTTCTCCATCCAGGT 60.339 52.381 0.00 0.00 39.02 4.00
1047 1060 0.391130 CCGCTTCGTTTCTCCATCCA 60.391 55.000 0.00 0.00 0.00 3.41
1081 1094 2.671070 CAACGCCCTCCCAGATGT 59.329 61.111 0.00 0.00 0.00 3.06
1095 1108 1.523758 ATGGAACGCTTCTGACCAAC 58.476 50.000 0.00 0.00 34.28 3.77
1132 1145 2.742372 GGTTGCGCGACACCTGAT 60.742 61.111 28.27 0.00 0.00 2.90
1278 1291 4.959460 ACCCCCAGCCCCTCCAAA 62.959 66.667 0.00 0.00 0.00 3.28
1437 1450 0.182775 GCACCGGGGACATCCTTATT 59.817 55.000 8.67 0.00 35.95 1.40
1572 1585 1.352017 ACCATGTCAGCACCATGAAGA 59.648 47.619 10.70 0.00 41.78 2.87
1616 1629 5.893824 AGGTCAAGCCATTTATTTAGAAGGG 59.106 40.000 0.00 0.00 40.61 3.95
1667 1681 8.862085 TGGACACCGAAACACTATTATCATATA 58.138 33.333 0.00 0.00 0.00 0.86
1668 1682 7.732025 TGGACACCGAAACACTATTATCATAT 58.268 34.615 0.00 0.00 0.00 1.78
1679 1693 2.486203 TGCAATATGGACACCGAAACAC 59.514 45.455 0.00 0.00 0.00 3.32
1776 1790 2.875933 CGTTGTGACAATACCCACTGTT 59.124 45.455 0.00 0.00 34.57 3.16
1923 1937 1.557099 ATGCTTCCGTGACAGGAGTA 58.443 50.000 0.00 0.00 41.98 2.59
1980 1994 8.873186 TTACCGTAATGATATCAGAGATACCA 57.127 34.615 11.78 0.00 0.00 3.25
2041 2055 2.291741 GCTAATTCATTCTCCCGCCTTG 59.708 50.000 0.00 0.00 0.00 3.61
2304 2323 2.361757 TCAATGAACAGGGTGCAAAGTG 59.638 45.455 0.00 0.00 0.00 3.16
2305 2324 2.624838 CTCAATGAACAGGGTGCAAAGT 59.375 45.455 0.00 0.00 0.00 2.66
2306 2325 2.886523 TCTCAATGAACAGGGTGCAAAG 59.113 45.455 0.00 0.00 0.00 2.77
2307 2326 2.942804 TCTCAATGAACAGGGTGCAAA 58.057 42.857 0.00 0.00 0.00 3.68
2308 2327 2.655090 TCTCAATGAACAGGGTGCAA 57.345 45.000 0.00 0.00 0.00 4.08
2309 2328 2.655090 TTCTCAATGAACAGGGTGCA 57.345 45.000 0.00 0.00 0.00 4.57
2310 2329 3.319122 AGTTTTCTCAATGAACAGGGTGC 59.681 43.478 0.00 0.00 33.88 5.01
2390 2409 5.610398 ACACTACTCAACATCACATTGTGA 58.390 37.500 21.05 21.05 46.90 3.58
2531 2550 7.749666 AGATATTTTGTGGCAGTACTCCATAT 58.250 34.615 14.58 9.38 35.81 1.78
2532 2551 7.136822 AGATATTTTGTGGCAGTACTCCATA 57.863 36.000 14.58 10.61 35.81 2.74
2533 2552 6.006275 AGATATTTTGTGGCAGTACTCCAT 57.994 37.500 14.58 4.35 35.81 3.41
2534 2553 5.435686 AGATATTTTGTGGCAGTACTCCA 57.564 39.130 9.25 9.25 0.00 3.86
2535 2554 5.992217 CCTAGATATTTTGTGGCAGTACTCC 59.008 44.000 0.00 0.00 0.00 3.85
2536 2555 6.817184 TCCTAGATATTTTGTGGCAGTACTC 58.183 40.000 0.00 0.00 0.00 2.59
2537 2556 6.384305 ACTCCTAGATATTTTGTGGCAGTACT 59.616 38.462 0.00 0.00 0.00 2.73
2584 2603 8.088981 TGACAGTTAATTCTCTCCAAGTTACTC 58.911 37.037 0.00 0.00 0.00 2.59
2612 2631 7.220741 TGTGACCATAGATCTGAGCTTATAC 57.779 40.000 5.18 0.00 0.00 1.47
2637 2656 5.469479 CATCCATATGCACGTACTGACATA 58.531 41.667 0.00 0.00 0.00 2.29
2639 2658 3.716601 CATCCATATGCACGTACTGACA 58.283 45.455 0.00 0.00 0.00 3.58
2688 2707 9.209175 GAGATAGCATTTTATTCACGGTTATCT 57.791 33.333 0.00 0.00 33.43 1.98
2703 2722 7.866870 AGTTCTTCTTTAGGGAGATAGCATTT 58.133 34.615 0.00 0.00 0.00 2.32
2721 2740 6.560253 TGTTCCTGAGCAATTAAGTTCTTC 57.440 37.500 0.00 0.00 0.00 2.87
2751 2770 6.945435 TGAGAAACCTGCCTGAACAATTAATA 59.055 34.615 0.00 0.00 0.00 0.98
2757 2776 2.297701 GTGAGAAACCTGCCTGAACAA 58.702 47.619 0.00 0.00 0.00 2.83
2758 2777 1.211703 TGTGAGAAACCTGCCTGAACA 59.788 47.619 0.00 0.00 0.00 3.18
2759 2778 1.967319 TGTGAGAAACCTGCCTGAAC 58.033 50.000 0.00 0.00 0.00 3.18
2760 2779 2.727123 TTGTGAGAAACCTGCCTGAA 57.273 45.000 0.00 0.00 0.00 3.02
2761 2780 2.727123 TTTGTGAGAAACCTGCCTGA 57.273 45.000 0.00 0.00 0.00 3.86
2763 2782 2.036346 GCAATTTGTGAGAAACCTGCCT 59.964 45.455 0.00 0.00 0.00 4.75
2764 2783 2.407090 GCAATTTGTGAGAAACCTGCC 58.593 47.619 0.00 0.00 0.00 4.85
2765 2784 2.407090 GGCAATTTGTGAGAAACCTGC 58.593 47.619 0.00 3.29 0.00 4.85
2767 2786 2.893489 GAGGGCAATTTGTGAGAAACCT 59.107 45.455 0.00 0.00 0.00 3.50
2768 2787 2.627699 TGAGGGCAATTTGTGAGAAACC 59.372 45.455 0.00 0.00 0.00 3.27
2866 2945 3.554692 CTTAGCAGGCGCGTTCGG 61.555 66.667 8.43 2.46 45.49 4.30
2908 2987 0.249398 GCCACCATCTCCGTAACTGT 59.751 55.000 0.00 0.00 0.00 3.55
2952 3031 2.168106 TGGCATCACACAAAACTTGCTT 59.832 40.909 0.00 0.00 0.00 3.91
2998 3077 3.439129 GGGAGTACATATAAATTGGGCGC 59.561 47.826 0.00 0.00 0.00 6.53
3001 3080 5.012768 ACGGAGGGAGTACATATAAATTGGG 59.987 44.000 0.00 0.00 0.00 4.12
3002 3081 6.110411 ACGGAGGGAGTACATATAAATTGG 57.890 41.667 0.00 0.00 0.00 3.16
3026 3105 3.241067 TCCTTCGACAAGTATTTCCGG 57.759 47.619 0.00 0.00 0.00 5.14
3028 3107 5.183228 TCCATTCCTTCGACAAGTATTTCC 58.817 41.667 0.00 0.00 0.00 3.13
3029 3108 6.316390 ACATCCATTCCTTCGACAAGTATTTC 59.684 38.462 0.00 0.00 0.00 2.17
3032 3111 5.359194 ACATCCATTCCTTCGACAAGTAT 57.641 39.130 0.00 0.00 0.00 2.12
3037 3116 6.016192 GTCTAGATACATCCATTCCTTCGACA 60.016 42.308 0.00 0.00 0.00 4.35
3042 3121 8.423906 AATACGTCTAGATACATCCATTCCTT 57.576 34.615 0.00 0.00 0.00 3.36
3084 3163 6.775939 TGTCGCAAAAATGCATAAAAATGA 57.224 29.167 0.00 0.00 34.41 2.57
3088 3167 7.881643 ATACTTGTCGCAAAAATGCATAAAA 57.118 28.000 0.00 0.00 34.41 1.52
3089 3168 7.881643 AATACTTGTCGCAAAAATGCATAAA 57.118 28.000 0.00 0.00 34.41 1.40
3090 3169 7.812191 AGAAATACTTGTCGCAAAAATGCATAA 59.188 29.630 0.00 0.00 34.41 1.90
3091 3170 7.273164 CAGAAATACTTGTCGCAAAAATGCATA 59.727 33.333 0.00 0.00 34.41 3.14
3092 3171 6.089820 CAGAAATACTTGTCGCAAAAATGCAT 59.910 34.615 0.00 0.00 34.41 3.96
3093 3172 5.401972 CAGAAATACTTGTCGCAAAAATGCA 59.598 36.000 1.42 0.00 34.41 3.96
3094 3173 5.164061 CCAGAAATACTTGTCGCAAAAATGC 60.164 40.000 0.00 0.00 0.00 3.56
3095 3174 6.088085 GTCCAGAAATACTTGTCGCAAAAATG 59.912 38.462 0.00 0.00 0.00 2.32
3096 3175 6.149633 GTCCAGAAATACTTGTCGCAAAAAT 58.850 36.000 0.00 0.00 0.00 1.82
3097 3176 5.516090 GTCCAGAAATACTTGTCGCAAAAA 58.484 37.500 0.00 0.00 0.00 1.94
3098 3177 4.319190 CGTCCAGAAATACTTGTCGCAAAA 60.319 41.667 0.00 0.00 0.00 2.44
3099 3178 3.185594 CGTCCAGAAATACTTGTCGCAAA 59.814 43.478 0.00 0.00 0.00 3.68
3100 3179 2.734606 CGTCCAGAAATACTTGTCGCAA 59.265 45.455 0.00 0.00 0.00 4.85
3112 3191 2.544844 ATACTCCCTCCGTCCAGAAA 57.455 50.000 0.00 0.00 0.00 2.52
3116 3195 4.669866 ATACATATACTCCCTCCGTCCA 57.330 45.455 0.00 0.00 0.00 4.02
3118 3197 8.977267 AATACTATACATATACTCCCTCCGTC 57.023 38.462 0.00 0.00 0.00 4.79
3141 3220 8.090788 TCTTAGTAGGAGCAAACCAATAGAAT 57.909 34.615 0.00 0.00 0.00 2.40
3278 3359 9.546909 CTAATACAGTGTTAGCTTTGAACATTG 57.453 33.333 17.17 17.17 45.16 2.82
3364 3445 5.107530 CCATAAGGCGAAAAACACAACAATG 60.108 40.000 0.00 0.00 0.00 2.82
3405 3486 4.415596 ACATAAGGTGAAGAAATGGCCAA 58.584 39.130 10.96 0.00 0.00 4.52
3408 3489 4.273318 AGGACATAAGGTGAAGAAATGGC 58.727 43.478 0.00 0.00 0.00 4.40
3604 3688 2.649190 TGGAAACTGCAAACTACAGCA 58.351 42.857 0.00 0.00 38.79 4.41
3838 3922 6.936335 TCAGCAAAGAACTGTCAAATAGATGA 59.064 34.615 0.00 0.00 36.50 2.92
3855 3939 3.176708 CGGCATGAGAAAATCAGCAAAG 58.823 45.455 0.00 0.00 42.53 2.77
3872 3956 4.328536 AGTTCACCAAACAATATACGGCA 58.671 39.130 0.00 0.00 40.56 5.69
4029 4113 5.829924 ACCCACTTGGATTGATATTGTCATC 59.170 40.000 0.00 0.00 35.17 2.92
4289 4375 2.817844 AGGCCAACCGAAGTATTGAAAC 59.182 45.455 5.01 0.00 42.76 2.78
4301 4387 1.539827 CTTCCAAAACTAGGCCAACCG 59.460 52.381 5.01 0.00 42.76 4.44
4449 4540 1.548719 TGAAGTCCATGGTACCGACAG 59.451 52.381 12.58 3.48 0.00 3.51
4450 4541 1.548719 CTGAAGTCCATGGTACCGACA 59.451 52.381 12.58 5.43 0.00 4.35
4479 4570 5.874810 TGCAGGTTAATACTGAGATGACAAC 59.125 40.000 12.65 0.00 38.20 3.32
4537 4631 3.882888 AGCTGTTCAGAATTTGTTTCCGA 59.117 39.130 3.84 0.00 34.67 4.55
4836 4938 5.508567 TCACCCATTCAAGAGCAATATTGA 58.491 37.500 19.73 0.00 33.73 2.57
4843 4945 1.067295 ACCTCACCCATTCAAGAGCA 58.933 50.000 0.00 0.00 0.00 4.26
4851 4953 1.228552 GCACCACACCTCACCCATT 60.229 57.895 0.00 0.00 0.00 3.16
4856 4958 1.302033 CTCCAGCACCACACCTCAC 60.302 63.158 0.00 0.00 0.00 3.51
4925 5027 6.349860 CCTTGAGAGCATCATCATTGTTTTCA 60.350 38.462 0.00 0.00 37.89 2.69
4964 5066 1.063567 ACACCCAGGCAACAGGTAAAA 60.064 47.619 0.00 0.00 43.06 1.52
4986 5088 1.247567 CGCCCTGGAAACATGAAAGT 58.752 50.000 0.00 0.00 41.51 2.66
5149 5252 6.708054 GGTCTATGACAGAACCAAATATCAGG 59.292 42.308 0.07 0.00 34.60 3.86
5179 5282 2.110296 GCTTACCTGGCCATTGAGC 58.890 57.895 5.51 10.84 0.00 4.26
5254 5357 9.828852 TTATAGTGCAAAAGTTAAATGTAACCG 57.171 29.630 1.94 0.00 40.55 4.44
5268 5371 9.646427 AACTTGTGAAAAACTTATAGTGCAAAA 57.354 25.926 0.00 0.00 0.00 2.44
5285 5388 0.100325 CGCAGTTGCCAACTTGTGAA 59.900 50.000 7.51 0.00 40.46 3.18
5367 5471 8.363434 CGATCAACGTTATGCTAACCTGCATT 62.363 42.308 0.00 0.00 42.62 3.56
5503 5607 1.077265 CTGGCCACCCTGGTTCAAT 59.923 57.895 0.00 0.00 40.46 2.57
5677 5782 6.010850 ACAATAGGGCATCTAATCTACGAGA 58.989 40.000 0.00 0.00 0.00 4.04
5697 5802 7.126733 ACTCTACAGGTCTGGTATCTTACAAT 58.873 38.462 2.87 0.00 34.19 2.71
5850 5955 0.525668 GCGATACGACACACCAGGAG 60.526 60.000 0.00 0.00 0.00 3.69
5863 5968 0.522705 TGAAGACGAGCACGCGATAC 60.523 55.000 15.93 0.38 43.96 2.24
5876 5981 1.669999 GCATGTGGGGGCATGAAGAC 61.670 60.000 9.87 0.00 46.65 3.01
5885 5990 1.417890 CTCTAAGTAGGCATGTGGGGG 59.582 57.143 0.00 0.00 0.00 5.40
5891 5996 3.118629 TGGAGTTGCTCTAAGTAGGCATG 60.119 47.826 0.00 0.00 35.84 4.06
5932 6038 0.387239 AAAGCAGACAAAATCGCCGC 60.387 50.000 0.00 0.00 0.00 6.53
5988 6094 1.660264 CGACCCAAACGCAAAAGCC 60.660 57.895 0.00 0.00 0.00 4.35
6035 6141 2.011540 TTTTGCACGACCCCAAAAAC 57.988 45.000 0.00 0.00 37.82 2.43
6084 6198 7.513969 GCCGGCATTAATGTTTAATTAACGTTC 60.514 37.037 24.80 0.00 43.26 3.95
6153 6267 7.827729 ACGCCTCCTCATAGTTTTTAGTTTTAT 59.172 33.333 0.00 0.00 0.00 1.40
6207 6362 3.083997 GACCTCACCAGCCCCGAT 61.084 66.667 0.00 0.00 0.00 4.18
6215 6370 1.934220 GACGCTCATCGACCTCACCA 61.934 60.000 0.00 0.00 41.67 4.17
6246 6409 2.579201 CCTGGTCGACCGCATTCT 59.421 61.111 28.70 0.00 39.43 2.40
6250 6413 3.931190 TAGAGCCTGGTCGACCGCA 62.931 63.158 28.80 14.58 39.43 5.69
6253 6416 2.809010 GCTAGAGCCTGGTCGACC 59.191 66.667 28.17 28.17 34.31 4.79
6331 6500 4.798682 GAGGCGGGGGAGGAGGAA 62.799 72.222 0.00 0.00 0.00 3.36
6367 6539 0.613292 ACCTCGAGATGCTGGAGTGT 60.613 55.000 15.71 0.00 35.12 3.55
6408 6580 1.220749 CGGCAGTAAAGGCTAGCCA 59.779 57.895 34.70 12.72 45.47 4.75
6412 6584 0.254747 AATGGCGGCAGTAAAGGCTA 59.745 50.000 19.29 0.00 0.00 3.93
6448 6620 2.492090 GCGACGTCAGCTCAGGAT 59.508 61.111 17.16 0.00 0.00 3.24
6484 6656 4.796231 CGCGAGTGGGTTAGCGCT 62.796 66.667 17.26 17.26 46.54 5.92
6528 6700 2.676121 CGCCCACCATCAAGCCAA 60.676 61.111 0.00 0.00 0.00 4.52
6529 6701 4.738998 CCGCCCACCATCAAGCCA 62.739 66.667 0.00 0.00 0.00 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.