Multiple sequence alignment - TraesCS2B01G310700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G310700 chr2B 100.000 3235 0 0 1 3235 443826342 443823108 0.000000e+00 5975.0
1 TraesCS2B01G310700 chr2B 97.059 34 1 0 103 136 726082054 726082087 1.250000e-04 58.4
2 TraesCS2B01G310700 chr2D 95.346 2600 87 14 324 2911 373904228 373901651 0.000000e+00 4100.0
3 TraesCS2B01G310700 chr2D 91.304 345 15 5 11 340 373904591 373904247 1.060000e-124 457.0
4 TraesCS2B01G310700 chrUn 94.100 2644 78 22 181 2793 300433641 300431045 0.000000e+00 3947.0
5 TraesCS2B01G310700 chrUn 96.045 177 5 2 11 186 300434008 300433833 1.470000e-73 287.0
6 TraesCS2B01G310700 chrUn 95.349 129 3 3 2785 2911 308098813 308098940 5.470000e-48 202.0
7 TraesCS2B01G310700 chr4A 80.114 1056 129 44 1108 2131 681790106 681791112 0.000000e+00 712.0
8 TraesCS2B01G310700 chr4A 93.902 328 18 2 2910 3235 534528838 534529165 8.060000e-136 494.0
9 TraesCS2B01G310700 chr4A 87.500 72 9 0 961 1032 681790007 681790078 2.070000e-12 84.2
10 TraesCS2B01G310700 chr4A 97.674 43 1 0 62 104 652197407 652197365 1.240000e-09 75.0
11 TraesCS2B01G310700 chr6B 94.225 329 17 2 2909 3235 124555533 124555205 4.820000e-138 501.0
12 TraesCS2B01G310700 chr6B 93.884 327 19 1 2910 3235 204459437 204459111 2.900000e-135 492.0
13 TraesCS2B01G310700 chr6B 93.808 323 20 0 2910 3232 702965816 702966138 1.350000e-133 486.0
14 TraesCS2B01G310700 chr5B 93.656 331 21 0 2905 3235 97475489 97475159 2.240000e-136 496.0
15 TraesCS2B01G310700 chr5B 97.059 34 1 0 103 136 227838842 227838875 1.250000e-04 58.4
16 TraesCS2B01G310700 chr4D 94.081 321 19 0 2915 3235 31213807 31213487 3.750000e-134 488.0
17 TraesCS2B01G310700 chr4D 88.265 392 35 8 1113 1499 474378018 474377633 2.940000e-125 459.0
18 TraesCS2B01G310700 chr4D 81.287 513 53 21 1629 2121 474377562 474377073 3.050000e-100 375.0
19 TraesCS2B01G310700 chr4D 95.122 41 2 0 64 104 192735949 192735909 7.490000e-07 65.8
20 TraesCS2B01G310700 chr3D 93.578 327 21 0 2909 3235 443725861 443726187 3.750000e-134 488.0
21 TraesCS2B01G310700 chr3D 92.308 338 23 3 2900 3235 20702640 20702976 8.120000e-131 477.0
22 TraesCS2B01G310700 chr5D 93.333 330 19 3 2907 3235 416784278 416784605 4.850000e-133 484.0
23 TraesCS2B01G310700 chr5D 94.737 38 1 1 103 140 213477989 213478025 1.250000e-04 58.4
24 TraesCS2B01G310700 chr5D 94.444 36 2 0 100 135 510601055 510601090 4.510000e-04 56.5
25 TraesCS2B01G310700 chr4B 88.265 392 34 9 1113 1499 597742392 597742008 2.940000e-125 459.0
26 TraesCS2B01G310700 chr4B 79.377 514 58 24 1629 2121 597741930 597741444 5.210000e-83 318.0
27 TraesCS2B01G310700 chr4B 90.278 72 7 0 961 1032 597742504 597742433 9.550000e-16 95.3
28 TraesCS2B01G310700 chr7A 97.674 43 0 1 59 101 43524388 43524347 4.480000e-09 73.1
29 TraesCS2B01G310700 chr3A 100.000 33 0 0 103 135 80223675 80223707 9.690000e-06 62.1
30 TraesCS2B01G310700 chr5A 94.737 38 1 1 103 140 277726056 277726092 1.250000e-04 58.4
31 TraesCS2B01G310700 chr2A 90.698 43 4 0 63 105 763365993 763366035 1.250000e-04 58.4
32 TraesCS2B01G310700 chr2A 100.000 30 0 0 72 101 770094179 770094208 4.510000e-04 56.5
33 TraesCS2B01G310700 chr1D 90.909 44 3 1 93 135 184070836 184070879 1.250000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G310700 chr2B 443823108 443826342 3234 True 5975.000000 5975 100.000000 1 3235 1 chr2B.!!$R1 3234
1 TraesCS2B01G310700 chr2D 373901651 373904591 2940 True 2278.500000 4100 93.325000 11 2911 2 chr2D.!!$R1 2900
2 TraesCS2B01G310700 chrUn 300431045 300434008 2963 True 2117.000000 3947 95.072500 11 2793 2 chrUn.!!$R1 2782
3 TraesCS2B01G310700 chr4A 681790007 681791112 1105 False 398.100000 712 83.807000 961 2131 2 chr4A.!!$F2 1170
4 TraesCS2B01G310700 chr4D 474377073 474378018 945 True 417.000000 459 84.776000 1113 2121 2 chr4D.!!$R3 1008
5 TraesCS2B01G310700 chr4B 597741444 597742504 1060 True 290.766667 459 85.973333 961 2121 3 chr4B.!!$R1 1160

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
643 898 0.829990 TATGTGCTGCGGAAGGATCA 59.170 50.0 0.0 0.0 0.0 2.92 F
1338 1611 0.618968 TTTGCCCCTCCTCTCCTCTC 60.619 60.0 0.0 0.0 0.0 3.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1992 2338 0.914417 GTGGAGGGAGGGTTCATGGA 60.914 60.0 0.00 0.0 0.00 3.41 R
3149 3510 0.029567 GTCATCGTCGCGATCCTTCT 59.970 55.0 14.06 0.0 45.19 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 8.553459 AGGTAGTACATCTGATTCACAAAAAG 57.447 34.615 2.06 0.00 0.00 2.27
60 61 7.272978 TCCCTCAGTAAACTAATGTAAGATGC 58.727 38.462 0.00 0.00 0.00 3.91
128 129 8.506168 ACAACATCTTATATTTGTGAACGGAT 57.494 30.769 0.00 0.00 30.99 4.18
204 403 3.172229 AGAGCGAATAGGAGCAAACTC 57.828 47.619 0.00 0.00 42.66 3.01
211 410 3.791973 ATAGGAGCAAACTCGAGACAG 57.208 47.619 21.68 8.86 44.48 3.51
224 423 1.613520 CGAGACAGGTACAGAGGGACA 60.614 57.143 0.00 0.00 0.00 4.02
343 591 3.257393 CTCACTACTGCGCTTTCTCATT 58.743 45.455 9.73 0.00 0.00 2.57
505 756 8.816640 ATAAGAAAAACGAAGCATTTTGACAT 57.183 26.923 0.00 0.00 31.52 3.06
507 758 7.858052 AGAAAAACGAAGCATTTTGACATAG 57.142 32.000 0.00 0.00 31.52 2.23
623 878 2.548057 CTCAAACAGTGCGGCTTCTAAA 59.452 45.455 0.00 0.00 0.00 1.85
624 879 3.146066 TCAAACAGTGCGGCTTCTAAAT 58.854 40.909 0.00 0.00 0.00 1.40
629 884 3.623060 ACAGTGCGGCTTCTAAATATGTG 59.377 43.478 0.00 0.00 0.00 3.21
643 898 0.829990 TATGTGCTGCGGAAGGATCA 59.170 50.000 0.00 0.00 0.00 2.92
780 1038 7.270579 GTGCATTATTAACTCGAACAAACTTCC 59.729 37.037 0.00 0.00 0.00 3.46
785 1043 3.771577 ACTCGAACAAACTTCCTCCAT 57.228 42.857 0.00 0.00 0.00 3.41
800 1058 3.045634 CCTCCATAACCCACCTATCACA 58.954 50.000 0.00 0.00 0.00 3.58
947 1206 1.604947 CCTCACACACAGCTCACTCAG 60.605 57.143 0.00 0.00 0.00 3.35
1052 1325 2.291190 CTCGTGCTTCTACTAGCTACCC 59.709 54.545 0.00 0.00 41.76 3.69
1056 1329 1.341852 GCTTCTACTAGCTACCCTGCC 59.658 57.143 0.00 0.00 38.15 4.85
1179 1452 1.003233 GGGGAGGTCATCGACAACTTT 59.997 52.381 0.00 0.00 33.68 2.66
1324 1597 1.882623 CCTTCTTCACTCTGGTTTGCC 59.117 52.381 0.00 0.00 0.00 4.52
1338 1611 0.618968 TTTGCCCCTCCTCTCCTCTC 60.619 60.000 0.00 0.00 0.00 3.20
1339 1612 2.123033 GCCCCTCCTCTCCTCTCC 60.123 72.222 0.00 0.00 0.00 3.71
1340 1613 2.710826 GCCCCTCCTCTCCTCTCCT 61.711 68.421 0.00 0.00 0.00 3.69
1341 1614 1.541672 CCCCTCCTCTCCTCTCCTC 59.458 68.421 0.00 0.00 0.00 3.71
1342 1615 0.998945 CCCCTCCTCTCCTCTCCTCT 60.999 65.000 0.00 0.00 0.00 3.69
1398 1673 4.572389 GTGTAACATCCAGCTGATAACTGG 59.428 45.833 17.39 3.34 46.52 4.00
1494 1774 6.057321 TCCACTGGTAATTACTAACCCAAG 57.943 41.667 15.05 0.00 34.69 3.61
1523 1803 7.225931 AGTTTACAGTACTCGAGCAATCAAAAA 59.774 33.333 13.61 2.96 0.00 1.94
1524 1804 5.597813 ACAGTACTCGAGCAATCAAAAAG 57.402 39.130 13.61 0.00 0.00 2.27
1527 1807 2.508526 ACTCGAGCAATCAAAAAGCCT 58.491 42.857 13.61 0.00 0.00 4.58
1528 1808 2.227388 ACTCGAGCAATCAAAAAGCCTG 59.773 45.455 13.61 0.00 0.00 4.85
1529 1809 2.485426 CTCGAGCAATCAAAAAGCCTGA 59.515 45.455 0.00 0.00 0.00 3.86
1530 1810 3.084039 TCGAGCAATCAAAAAGCCTGAT 58.916 40.909 0.00 0.00 34.97 2.90
1531 1811 3.127548 TCGAGCAATCAAAAAGCCTGATC 59.872 43.478 0.00 0.00 32.26 2.92
1532 1812 3.119743 CGAGCAATCAAAAAGCCTGATCA 60.120 43.478 0.00 0.00 32.26 2.92
1533 1813 4.439700 CGAGCAATCAAAAAGCCTGATCAT 60.440 41.667 0.00 0.00 32.26 2.45
1682 2002 7.175104 AGCTTTCCTATGGACATAAAACTTGA 58.825 34.615 0.00 0.00 0.00 3.02
1757 2079 7.838498 GCATAAAAACATGCTTGATCAGATTC 58.162 34.615 6.60 0.00 46.35 2.52
1782 2115 3.261580 CTTGTGTATGCAGGATCGTCAA 58.738 45.455 0.00 0.00 0.00 3.18
1838 2172 5.183904 GGTAAGTCCTTTTCATGCATGACTT 59.816 40.000 28.72 25.94 43.34 3.01
1992 2338 0.886490 CCAACAGAAGAAGCGGCAGT 60.886 55.000 1.45 0.00 0.00 4.40
2198 2550 5.163395 GCCTATGGATCAACCTATAGCTACC 60.163 48.000 0.00 0.00 39.86 3.18
2226 2578 9.990868 TTAGCTACCATCTACATATATCTCCAA 57.009 33.333 0.00 0.00 0.00 3.53
2227 2579 8.299990 AGCTACCATCTACATATATCTCCAAC 57.700 38.462 0.00 0.00 0.00 3.77
2459 2812 1.152030 ACAGTTGGGGGCTGAGAGA 60.152 57.895 0.00 0.00 37.40 3.10
2460 2813 0.548682 ACAGTTGGGGGCTGAGAGAT 60.549 55.000 0.00 0.00 37.40 2.75
2669 3029 1.473434 CCAGCTTGTACCCGATCCTTC 60.473 57.143 0.00 0.00 0.00 3.46
2800 3160 6.528537 TGTTAGGTTTTGCCGTATCTACTA 57.471 37.500 0.00 0.00 43.70 1.82
2809 3169 2.626743 GCCGTATCTACTATGTGTGGGT 59.373 50.000 0.00 0.00 0.00 4.51
2811 3171 3.635373 CCGTATCTACTATGTGTGGGTGT 59.365 47.826 0.00 0.00 0.00 4.16
2860 3220 3.580022 TGAGAAGAGGCATCAGTTCTTGA 59.420 43.478 0.00 0.00 40.85 3.02
2911 3272 5.291614 CCTTTTGGTCGATTTGGCAATATTG 59.708 40.000 11.27 11.27 34.07 1.90
2912 3273 8.094049 CCTTTTGGTCGATTTGGCAATATTGC 62.094 42.308 28.68 28.68 43.38 3.56
2927 3288 6.588348 CAATATTGCCGAAAAAGATTTCCC 57.412 37.500 1.74 0.00 41.58 3.97
2928 3289 3.610040 ATTGCCGAAAAAGATTTCCCC 57.390 42.857 0.00 0.00 41.58 4.81
2929 3290 1.262417 TGCCGAAAAAGATTTCCCCC 58.738 50.000 0.00 0.00 41.58 5.40
2956 3317 7.079182 CTTTGTATATAAAGCAACCAACCGA 57.921 36.000 8.78 0.00 31.62 4.69
2957 3318 7.450124 TTTGTATATAAAGCAACCAACCGAA 57.550 32.000 0.00 0.00 0.00 4.30
2958 3319 6.425577 TGTATATAAAGCAACCAACCGAAC 57.574 37.500 0.00 0.00 0.00 3.95
2959 3320 4.976224 ATATAAAGCAACCAACCGAACC 57.024 40.909 0.00 0.00 0.00 3.62
2960 3321 2.054232 TAAAGCAACCAACCGAACCA 57.946 45.000 0.00 0.00 0.00 3.67
2961 3322 1.408969 AAAGCAACCAACCGAACCAT 58.591 45.000 0.00 0.00 0.00 3.55
2962 3323 2.279935 AAGCAACCAACCGAACCATA 57.720 45.000 0.00 0.00 0.00 2.74
2963 3324 1.530323 AGCAACCAACCGAACCATAC 58.470 50.000 0.00 0.00 0.00 2.39
2964 3325 1.202830 AGCAACCAACCGAACCATACA 60.203 47.619 0.00 0.00 0.00 2.29
2965 3326 1.199097 GCAACCAACCGAACCATACAG 59.801 52.381 0.00 0.00 0.00 2.74
2966 3327 1.810151 CAACCAACCGAACCATACAGG 59.190 52.381 0.00 0.00 45.67 4.00
2967 3328 0.326927 ACCAACCGAACCATACAGGG 59.673 55.000 0.00 0.00 43.89 4.45
2968 3329 0.616371 CCAACCGAACCATACAGGGA 59.384 55.000 0.00 0.00 43.89 4.20
2969 3330 1.211949 CCAACCGAACCATACAGGGAT 59.788 52.381 0.00 0.00 43.89 3.85
2970 3331 2.436542 CCAACCGAACCATACAGGGATA 59.563 50.000 0.00 0.00 43.89 2.59
2971 3332 3.494398 CCAACCGAACCATACAGGGATAG 60.494 52.174 0.00 0.00 43.89 2.08
2972 3333 2.326428 ACCGAACCATACAGGGATAGG 58.674 52.381 0.00 0.00 43.89 2.57
2973 3334 1.623811 CCGAACCATACAGGGATAGGG 59.376 57.143 0.00 0.00 43.89 3.53
2974 3335 1.623811 CGAACCATACAGGGATAGGGG 59.376 57.143 0.00 0.00 43.89 4.79
2975 3336 1.351350 GAACCATACAGGGATAGGGGC 59.649 57.143 0.00 0.00 43.89 5.80
2976 3337 0.573279 ACCATACAGGGATAGGGGCT 59.427 55.000 0.00 0.00 43.89 5.19
2977 3338 0.987294 CCATACAGGGATAGGGGCTG 59.013 60.000 0.00 0.00 0.00 4.85
2978 3339 0.987294 CATACAGGGATAGGGGCTGG 59.013 60.000 0.00 0.00 0.00 4.85
2979 3340 0.178861 ATACAGGGATAGGGGCTGGG 60.179 60.000 0.00 0.00 0.00 4.45
2980 3341 2.340909 TACAGGGATAGGGGCTGGGG 62.341 65.000 0.00 0.00 0.00 4.96
2981 3342 4.928520 AGGGATAGGGGCTGGGGC 62.929 72.222 0.00 0.00 37.82 5.80
2985 3346 4.835456 ATAGGGGCTGGGGCGGAA 62.835 66.667 0.00 0.00 39.81 4.30
2998 3359 3.248029 CGGAAGCAGCACAGTCAC 58.752 61.111 0.00 0.00 0.00 3.67
2999 3360 2.661566 CGGAAGCAGCACAGTCACG 61.662 63.158 0.00 0.00 0.00 4.35
3000 3361 2.553268 GAAGCAGCACAGTCACGC 59.447 61.111 0.00 0.00 0.00 5.34
3001 3362 2.959357 GAAGCAGCACAGTCACGCC 61.959 63.158 0.00 0.00 0.00 5.68
3002 3363 4.996434 AGCAGCACAGTCACGCCC 62.996 66.667 0.00 0.00 0.00 6.13
3004 3365 2.591429 CAGCACAGTCACGCCCAA 60.591 61.111 0.00 0.00 0.00 4.12
3005 3366 2.186160 CAGCACAGTCACGCCCAAA 61.186 57.895 0.00 0.00 0.00 3.28
3006 3367 1.453015 AGCACAGTCACGCCCAAAA 60.453 52.632 0.00 0.00 0.00 2.44
3007 3368 1.008538 GCACAGTCACGCCCAAAAG 60.009 57.895 0.00 0.00 0.00 2.27
3008 3369 1.444119 GCACAGTCACGCCCAAAAGA 61.444 55.000 0.00 0.00 0.00 2.52
3009 3370 1.021202 CACAGTCACGCCCAAAAGAA 58.979 50.000 0.00 0.00 0.00 2.52
3010 3371 1.403679 CACAGTCACGCCCAAAAGAAA 59.596 47.619 0.00 0.00 0.00 2.52
3011 3372 2.096248 ACAGTCACGCCCAAAAGAAAA 58.904 42.857 0.00 0.00 0.00 2.29
3012 3373 2.099098 ACAGTCACGCCCAAAAGAAAAG 59.901 45.455 0.00 0.00 0.00 2.27
3013 3374 2.357637 CAGTCACGCCCAAAAGAAAAGA 59.642 45.455 0.00 0.00 0.00 2.52
3014 3375 2.357952 AGTCACGCCCAAAAGAAAAGAC 59.642 45.455 0.00 0.00 0.00 3.01
3015 3376 2.098443 GTCACGCCCAAAAGAAAAGACA 59.902 45.455 0.00 0.00 0.00 3.41
3016 3377 2.357637 TCACGCCCAAAAGAAAAGACAG 59.642 45.455 0.00 0.00 0.00 3.51
3017 3378 2.357637 CACGCCCAAAAGAAAAGACAGA 59.642 45.455 0.00 0.00 0.00 3.41
3018 3379 2.618709 ACGCCCAAAAGAAAAGACAGAG 59.381 45.455 0.00 0.00 0.00 3.35
3019 3380 2.878406 CGCCCAAAAGAAAAGACAGAGA 59.122 45.455 0.00 0.00 0.00 3.10
3020 3381 3.315191 CGCCCAAAAGAAAAGACAGAGAA 59.685 43.478 0.00 0.00 0.00 2.87
3021 3382 4.202010 CGCCCAAAAGAAAAGACAGAGAAA 60.202 41.667 0.00 0.00 0.00 2.52
3022 3383 5.284864 GCCCAAAAGAAAAGACAGAGAAAG 58.715 41.667 0.00 0.00 0.00 2.62
3023 3384 5.067805 GCCCAAAAGAAAAGACAGAGAAAGA 59.932 40.000 0.00 0.00 0.00 2.52
3024 3385 6.405842 GCCCAAAAGAAAAGACAGAGAAAGAA 60.406 38.462 0.00 0.00 0.00 2.52
3025 3386 6.975197 CCCAAAAGAAAAGACAGAGAAAGAAC 59.025 38.462 0.00 0.00 0.00 3.01
3026 3387 7.362920 CCCAAAAGAAAAGACAGAGAAAGAACA 60.363 37.037 0.00 0.00 0.00 3.18
3027 3388 8.028938 CCAAAAGAAAAGACAGAGAAAGAACAA 58.971 33.333 0.00 0.00 0.00 2.83
3028 3389 9.410556 CAAAAGAAAAGACAGAGAAAGAACAAA 57.589 29.630 0.00 0.00 0.00 2.83
3029 3390 9.631452 AAAAGAAAAGACAGAGAAAGAACAAAG 57.369 29.630 0.00 0.00 0.00 2.77
3030 3391 8.567285 AAGAAAAGACAGAGAAAGAACAAAGA 57.433 30.769 0.00 0.00 0.00 2.52
3031 3392 8.567285 AGAAAAGACAGAGAAAGAACAAAGAA 57.433 30.769 0.00 0.00 0.00 2.52
3032 3393 9.014297 AGAAAAGACAGAGAAAGAACAAAGAAA 57.986 29.630 0.00 0.00 0.00 2.52
3033 3394 8.972262 AAAAGACAGAGAAAGAACAAAGAAAC 57.028 30.769 0.00 0.00 0.00 2.78
3034 3395 7.687941 AAGACAGAGAAAGAACAAAGAAACA 57.312 32.000 0.00 0.00 0.00 2.83
3035 3396 7.687941 AGACAGAGAAAGAACAAAGAAACAA 57.312 32.000 0.00 0.00 0.00 2.83
3036 3397 8.110860 AGACAGAGAAAGAACAAAGAAACAAA 57.889 30.769 0.00 0.00 0.00 2.83
3037 3398 8.743714 AGACAGAGAAAGAACAAAGAAACAAAT 58.256 29.630 0.00 0.00 0.00 2.32
3038 3399 8.693542 ACAGAGAAAGAACAAAGAAACAAATG 57.306 30.769 0.00 0.00 0.00 2.32
3039 3400 7.276438 ACAGAGAAAGAACAAAGAAACAAATGC 59.724 33.333 0.00 0.00 0.00 3.56
3040 3401 6.758416 AGAGAAAGAACAAAGAAACAAATGCC 59.242 34.615 0.00 0.00 0.00 4.40
3041 3402 5.519927 AGAAAGAACAAAGAAACAAATGCCG 59.480 36.000 0.00 0.00 0.00 5.69
3042 3403 4.647424 AGAACAAAGAAACAAATGCCGA 57.353 36.364 0.00 0.00 0.00 5.54
3043 3404 5.200368 AGAACAAAGAAACAAATGCCGAT 57.800 34.783 0.00 0.00 0.00 4.18
3044 3405 6.325919 AGAACAAAGAAACAAATGCCGATA 57.674 33.333 0.00 0.00 0.00 2.92
3045 3406 6.744112 AGAACAAAGAAACAAATGCCGATAA 58.256 32.000 0.00 0.00 0.00 1.75
3046 3407 7.378181 AGAACAAAGAAACAAATGCCGATAAT 58.622 30.769 0.00 0.00 0.00 1.28
3047 3408 6.949578 ACAAAGAAACAAATGCCGATAATG 57.050 33.333 0.00 0.00 0.00 1.90
3048 3409 5.868801 ACAAAGAAACAAATGCCGATAATGG 59.131 36.000 0.00 0.00 0.00 3.16
3060 3421 3.961477 CGATAATGGCGGATCAACAAA 57.039 42.857 0.00 0.00 0.00 2.83
3061 3422 4.285807 CGATAATGGCGGATCAACAAAA 57.714 40.909 0.00 0.00 0.00 2.44
3062 3423 4.667262 CGATAATGGCGGATCAACAAAAA 58.333 39.130 0.00 0.00 0.00 1.94
3063 3424 4.499040 CGATAATGGCGGATCAACAAAAAC 59.501 41.667 0.00 0.00 0.00 2.43
3064 3425 2.346099 ATGGCGGATCAACAAAAACG 57.654 45.000 0.00 0.00 0.00 3.60
3065 3426 1.309950 TGGCGGATCAACAAAAACGA 58.690 45.000 0.00 0.00 0.00 3.85
3066 3427 1.676529 TGGCGGATCAACAAAAACGAA 59.323 42.857 0.00 0.00 0.00 3.85
3067 3428 2.287308 TGGCGGATCAACAAAAACGAAG 60.287 45.455 0.00 0.00 0.00 3.79
3068 3429 2.031508 GGCGGATCAACAAAAACGAAGA 60.032 45.455 0.00 0.00 0.00 2.87
3069 3430 3.549221 GGCGGATCAACAAAAACGAAGAA 60.549 43.478 0.00 0.00 0.00 2.52
3070 3431 3.664025 GCGGATCAACAAAAACGAAGAAG 59.336 43.478 0.00 0.00 0.00 2.85
3071 3432 3.664025 CGGATCAACAAAAACGAAGAAGC 59.336 43.478 0.00 0.00 0.00 3.86
3072 3433 3.981416 GGATCAACAAAAACGAAGAAGCC 59.019 43.478 0.00 0.00 0.00 4.35
3073 3434 4.261614 GGATCAACAAAAACGAAGAAGCCT 60.262 41.667 0.00 0.00 0.00 4.58
3074 3435 4.287238 TCAACAAAAACGAAGAAGCCTC 57.713 40.909 0.00 0.00 0.00 4.70
3075 3436 3.035942 CAACAAAAACGAAGAAGCCTCG 58.964 45.455 0.00 0.00 0.00 4.63
3076 3437 1.002792 ACAAAAACGAAGAAGCCTCGC 60.003 47.619 0.00 0.00 0.00 5.03
3077 3438 0.234884 AAAAACGAAGAAGCCTCGCG 59.765 50.000 0.00 0.00 0.00 5.87
3078 3439 0.599204 AAAACGAAGAAGCCTCGCGA 60.599 50.000 9.26 9.26 0.00 5.87
3079 3440 1.282930 AAACGAAGAAGCCTCGCGAC 61.283 55.000 3.71 0.00 0.00 5.19
3080 3441 2.881352 CGAAGAAGCCTCGCGACC 60.881 66.667 3.71 0.00 0.00 4.79
3081 3442 2.261671 GAAGAAGCCTCGCGACCA 59.738 61.111 3.71 0.00 0.00 4.02
3082 3443 2.048127 AAGAAGCCTCGCGACCAC 60.048 61.111 3.71 0.00 0.00 4.16
3083 3444 2.493907 GAAGAAGCCTCGCGACCACT 62.494 60.000 3.71 0.00 0.00 4.00
3084 3445 2.771763 AAGAAGCCTCGCGACCACTG 62.772 60.000 3.71 0.00 0.00 3.66
3098 3459 4.666253 ACTGCGCCCACCAGCATT 62.666 61.111 4.18 0.00 42.95 3.56
3099 3460 3.376078 CTGCGCCCACCAGCATTT 61.376 61.111 4.18 0.00 42.95 2.32
3100 3461 2.916703 TGCGCCCACCAGCATTTT 60.917 55.556 4.18 0.00 38.59 1.82
3101 3462 2.125952 GCGCCCACCAGCATTTTC 60.126 61.111 0.00 0.00 0.00 2.29
3102 3463 2.573340 CGCCCACCAGCATTTTCC 59.427 61.111 0.00 0.00 0.00 3.13
3103 3464 2.274645 CGCCCACCAGCATTTTCCA 61.275 57.895 0.00 0.00 0.00 3.53
3104 3465 1.293179 GCCCACCAGCATTTTCCAC 59.707 57.895 0.00 0.00 0.00 4.02
3105 3466 1.187567 GCCCACCAGCATTTTCCACT 61.188 55.000 0.00 0.00 0.00 4.00
3106 3467 1.890573 GCCCACCAGCATTTTCCACTA 60.891 52.381 0.00 0.00 0.00 2.74
3107 3468 2.094675 CCCACCAGCATTTTCCACTAG 58.905 52.381 0.00 0.00 0.00 2.57
3108 3469 2.094675 CCACCAGCATTTTCCACTAGG 58.905 52.381 0.00 0.00 0.00 3.02
3109 3470 1.474077 CACCAGCATTTTCCACTAGGC 59.526 52.381 0.00 0.00 33.74 3.93
3110 3471 1.355720 ACCAGCATTTTCCACTAGGCT 59.644 47.619 0.00 0.00 33.74 4.58
3111 3472 2.019984 CCAGCATTTTCCACTAGGCTC 58.980 52.381 0.00 0.00 33.74 4.70
3112 3473 2.019984 CAGCATTTTCCACTAGGCTCC 58.980 52.381 0.00 0.00 33.74 4.70
3113 3474 1.635487 AGCATTTTCCACTAGGCTCCA 59.365 47.619 0.00 0.00 33.74 3.86
3114 3475 2.041620 AGCATTTTCCACTAGGCTCCAA 59.958 45.455 0.00 0.00 33.74 3.53
3115 3476 2.424956 GCATTTTCCACTAGGCTCCAAG 59.575 50.000 0.00 0.00 33.74 3.61
3116 3477 3.873801 GCATTTTCCACTAGGCTCCAAGA 60.874 47.826 0.00 0.00 33.74 3.02
3117 3478 3.418684 TTTTCCACTAGGCTCCAAGAC 57.581 47.619 0.00 0.00 33.74 3.01
3118 3479 2.327325 TTCCACTAGGCTCCAAGACT 57.673 50.000 0.00 0.00 37.37 3.24
3119 3480 1.853963 TCCACTAGGCTCCAAGACTC 58.146 55.000 0.00 0.00 33.88 3.36
3120 3481 0.827368 CCACTAGGCTCCAAGACTCC 59.173 60.000 0.00 0.00 33.88 3.85
3121 3482 0.457851 CACTAGGCTCCAAGACTCCG 59.542 60.000 0.00 0.00 33.88 4.63
3122 3483 0.684805 ACTAGGCTCCAAGACTCCGG 60.685 60.000 0.00 0.00 33.88 5.14
3123 3484 0.395862 CTAGGCTCCAAGACTCCGGA 60.396 60.000 2.93 2.93 33.88 5.14
3126 3487 2.492090 CTCCAAGACTCCGGAGCG 59.508 66.667 31.56 16.61 42.30 5.03
3127 3488 3.708220 CTCCAAGACTCCGGAGCGC 62.708 68.421 31.56 22.65 42.30 5.92
3128 3489 4.821589 CCAAGACTCCGGAGCGCC 62.822 72.222 31.56 19.73 0.00 6.53
3138 3499 4.971125 GGAGCGCCGGCACCTATC 62.971 72.222 28.98 15.38 45.34 2.08
3139 3500 4.221422 GAGCGCCGGCACCTATCA 62.221 66.667 28.98 0.00 43.41 2.15
3140 3501 3.733344 GAGCGCCGGCACCTATCAA 62.733 63.158 28.98 0.00 43.41 2.57
3141 3502 3.573491 GCGCCGGCACCTATCAAC 61.573 66.667 28.98 0.00 39.62 3.18
3142 3503 2.125310 CGCCGGCACCTATCAACA 60.125 61.111 28.98 0.00 0.00 3.33
3143 3504 2.461110 CGCCGGCACCTATCAACAC 61.461 63.158 28.98 0.00 0.00 3.32
3144 3505 2.112815 GCCGGCACCTATCAACACC 61.113 63.158 24.80 0.00 0.00 4.16
3145 3506 1.602237 CCGGCACCTATCAACACCT 59.398 57.895 0.00 0.00 0.00 4.00
3146 3507 0.462047 CCGGCACCTATCAACACCTC 60.462 60.000 0.00 0.00 0.00 3.85
3147 3508 0.462047 CGGCACCTATCAACACCTCC 60.462 60.000 0.00 0.00 0.00 4.30
3148 3509 0.618458 GGCACCTATCAACACCTCCA 59.382 55.000 0.00 0.00 0.00 3.86
3149 3510 1.004277 GGCACCTATCAACACCTCCAA 59.996 52.381 0.00 0.00 0.00 3.53
3150 3511 2.359900 GCACCTATCAACACCTCCAAG 58.640 52.381 0.00 0.00 0.00 3.61
3151 3512 2.027192 GCACCTATCAACACCTCCAAGA 60.027 50.000 0.00 0.00 0.00 3.02
3152 3513 3.559171 GCACCTATCAACACCTCCAAGAA 60.559 47.826 0.00 0.00 0.00 2.52
3153 3514 4.256920 CACCTATCAACACCTCCAAGAAG 58.743 47.826 0.00 0.00 0.00 2.85
3154 3515 3.264450 ACCTATCAACACCTCCAAGAAGG 59.736 47.826 0.00 0.00 42.55 3.46
3155 3516 3.519510 CCTATCAACACCTCCAAGAAGGA 59.480 47.826 0.00 0.00 46.75 3.36
3163 3524 1.138883 TCCAAGAAGGATCGCGACG 59.861 57.895 12.93 0.00 43.07 5.12
3164 3525 1.138883 CCAAGAAGGATCGCGACGA 59.861 57.895 12.93 4.51 41.22 4.20
3166 3527 0.848942 CAAGAAGGATCGCGACGATG 59.151 55.000 12.93 0.00 47.00 3.84
3167 3528 0.738975 AAGAAGGATCGCGACGATGA 59.261 50.000 12.93 0.00 47.00 2.92
3168 3529 0.029567 AGAAGGATCGCGACGATGAC 59.970 55.000 12.93 10.86 47.00 3.06
3169 3530 1.262824 GAAGGATCGCGACGATGACG 61.263 60.000 12.93 0.00 47.00 4.35
3170 3531 1.712018 AAGGATCGCGACGATGACGA 61.712 55.000 12.93 0.00 47.00 4.20
3171 3532 2.004489 GGATCGCGACGATGACGAC 61.004 63.158 12.93 4.89 47.00 4.34
3178 3539 2.842995 GACGATGACGACGCTACTG 58.157 57.895 0.00 0.00 42.66 2.74
3179 3540 1.194896 GACGATGACGACGCTACTGC 61.195 60.000 0.00 0.00 42.66 4.40
3180 3541 1.939785 CGATGACGACGCTACTGCC 60.940 63.158 0.00 0.00 42.66 4.85
3181 3542 1.138883 GATGACGACGCTACTGCCA 59.861 57.895 0.00 0.00 35.36 4.92
3182 3543 0.457853 GATGACGACGCTACTGCCAA 60.458 55.000 0.00 0.00 35.36 4.52
3183 3544 0.458543 ATGACGACGCTACTGCCAAG 60.459 55.000 0.00 0.00 35.36 3.61
3184 3545 1.805945 GACGACGCTACTGCCAAGG 60.806 63.158 0.00 0.00 35.36 3.61
3185 3546 2.209064 GACGACGCTACTGCCAAGGA 62.209 60.000 0.00 0.00 35.36 3.36
3186 3547 1.141881 CGACGCTACTGCCAAGGAT 59.858 57.895 0.00 0.00 35.36 3.24
3187 3548 0.460284 CGACGCTACTGCCAAGGATT 60.460 55.000 0.00 0.00 35.36 3.01
3188 3549 1.739067 GACGCTACTGCCAAGGATTT 58.261 50.000 0.00 0.00 35.36 2.17
3189 3550 2.084546 GACGCTACTGCCAAGGATTTT 58.915 47.619 0.00 0.00 35.36 1.82
3190 3551 2.084546 ACGCTACTGCCAAGGATTTTC 58.915 47.619 0.00 0.00 35.36 2.29
3191 3552 1.401905 CGCTACTGCCAAGGATTTTCC 59.598 52.381 0.00 0.00 34.19 3.13
3192 3553 1.751351 GCTACTGCCAAGGATTTTCCC 59.249 52.381 0.00 0.00 37.19 3.97
3193 3554 2.379005 CTACTGCCAAGGATTTTCCCC 58.621 52.381 0.00 0.00 37.19 4.81
3194 3555 0.611896 ACTGCCAAGGATTTTCCCCG 60.612 55.000 0.00 0.00 37.19 5.73
3195 3556 1.304879 TGCCAAGGATTTTCCCCGG 60.305 57.895 0.00 0.00 37.19 5.73
3196 3557 1.304962 GCCAAGGATTTTCCCCGGT 60.305 57.895 0.00 0.00 37.19 5.28
3197 3558 0.033894 GCCAAGGATTTTCCCCGGTA 60.034 55.000 0.00 0.00 37.19 4.02
3198 3559 1.758936 CCAAGGATTTTCCCCGGTAC 58.241 55.000 0.00 0.00 37.19 3.34
3199 3560 1.004979 CCAAGGATTTTCCCCGGTACA 59.995 52.381 0.00 0.00 37.19 2.90
3200 3561 2.089201 CAAGGATTTTCCCCGGTACAC 58.911 52.381 0.00 0.00 37.19 2.90
3201 3562 0.251073 AGGATTTTCCCCGGTACACG 59.749 55.000 0.00 0.00 37.19 4.49
3202 3563 2.173230 AGGATTTTCCCCGGTACACGA 61.173 52.381 0.00 0.00 40.84 4.35
3203 3564 4.311892 AGGATTTTCCCCGGTACACGAC 62.312 54.545 0.00 0.00 40.84 4.34
3211 3572 2.099831 GGTACACGACGAGGCGAG 59.900 66.667 4.95 0.00 34.83 5.03
3212 3573 2.393768 GGTACACGACGAGGCGAGA 61.394 63.158 4.95 0.00 34.83 4.04
3213 3574 1.060622 GTACACGACGAGGCGAGAG 59.939 63.158 4.95 0.00 34.83 3.20
3214 3575 2.104859 TACACGACGAGGCGAGAGG 61.105 63.158 4.95 0.00 34.83 3.69
3215 3576 2.511545 TACACGACGAGGCGAGAGGA 62.512 60.000 4.95 0.00 34.83 3.71
3216 3577 2.359602 ACGACGAGGCGAGAGGAA 60.360 61.111 4.95 0.00 34.83 3.36
3217 3578 2.400158 ACGACGAGGCGAGAGGAAG 61.400 63.158 4.95 0.00 34.83 3.46
3218 3579 2.802106 GACGAGGCGAGAGGAAGG 59.198 66.667 0.00 0.00 0.00 3.46
3219 3580 1.749638 GACGAGGCGAGAGGAAGGA 60.750 63.158 0.00 0.00 0.00 3.36
3220 3581 1.076632 ACGAGGCGAGAGGAAGGAT 60.077 57.895 0.00 0.00 0.00 3.24
3221 3582 0.183014 ACGAGGCGAGAGGAAGGATA 59.817 55.000 0.00 0.00 0.00 2.59
3222 3583 0.878416 CGAGGCGAGAGGAAGGATAG 59.122 60.000 0.00 0.00 0.00 2.08
3223 3584 0.601057 GAGGCGAGAGGAAGGATAGC 59.399 60.000 0.00 0.00 0.00 2.97
3224 3585 0.830023 AGGCGAGAGGAAGGATAGCC 60.830 60.000 0.00 0.00 43.07 3.93
3225 3586 1.668867 GCGAGAGGAAGGATAGCCC 59.331 63.158 0.00 0.00 33.31 5.19
3226 3587 1.822114 GCGAGAGGAAGGATAGCCCC 61.822 65.000 0.00 0.00 34.66 5.80
3227 3588 1.188871 CGAGAGGAAGGATAGCCCCC 61.189 65.000 0.00 0.00 34.66 5.40
3228 3589 1.152226 AGAGGAAGGATAGCCCCCG 60.152 63.158 0.00 0.00 33.84 5.73
3229 3590 1.152312 GAGGAAGGATAGCCCCCGA 60.152 63.158 0.00 0.00 33.84 5.14
3230 3591 1.459730 AGGAAGGATAGCCCCCGAC 60.460 63.158 0.00 0.00 33.84 4.79
3231 3592 2.735237 GAAGGATAGCCCCCGACG 59.265 66.667 0.00 0.00 34.66 5.12
3232 3593 3.516866 GAAGGATAGCCCCCGACGC 62.517 68.421 0.00 0.00 34.66 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.338682 GTGAATCAGATGTACTACCTCCGT 59.661 45.833 0.00 0.00 0.00 4.69
1 2 4.338400 TGTGAATCAGATGTACTACCTCCG 59.662 45.833 0.00 0.00 0.00 4.63
2 3 5.854010 TGTGAATCAGATGTACTACCTCC 57.146 43.478 0.00 0.00 0.00 4.30
3 4 8.547967 TTTTTGTGAATCAGATGTACTACCTC 57.452 34.615 0.00 0.00 0.00 3.85
4 5 7.607991 CCTTTTTGTGAATCAGATGTACTACCT 59.392 37.037 0.00 0.00 0.00 3.08
5 6 7.390718 ACCTTTTTGTGAATCAGATGTACTACC 59.609 37.037 0.00 0.00 0.00 3.18
6 7 8.324163 ACCTTTTTGTGAATCAGATGTACTAC 57.676 34.615 0.00 0.00 0.00 2.73
7 8 8.918202 AACCTTTTTGTGAATCAGATGTACTA 57.082 30.769 0.00 0.00 0.00 1.82
8 9 7.823745 AACCTTTTTGTGAATCAGATGTACT 57.176 32.000 0.00 0.00 0.00 2.73
9 10 8.784043 AGTAACCTTTTTGTGAATCAGATGTAC 58.216 33.333 0.00 0.00 0.00 2.90
29 30 6.944096 ACATTAGTTTACTGAGGGAGTAACC 58.056 40.000 0.00 0.00 45.16 2.85
204 403 1.096416 GTCCCTCTGTACCTGTCTCG 58.904 60.000 0.00 0.00 0.00 4.04
211 410 0.608640 CACTGGTGTCCCTCTGTACC 59.391 60.000 0.00 0.00 0.00 3.34
242 441 1.202521 CCAAGGGGTGCAAAAACAGAC 60.203 52.381 0.00 0.00 0.00 3.51
613 868 2.348872 CGCAGCACATATTTAGAAGCCG 60.349 50.000 0.00 0.00 0.00 5.52
623 878 1.417517 TGATCCTTCCGCAGCACATAT 59.582 47.619 0.00 0.00 0.00 1.78
624 879 0.829990 TGATCCTTCCGCAGCACATA 59.170 50.000 0.00 0.00 0.00 2.29
629 884 1.064654 GTTCATTGATCCTTCCGCAGC 59.935 52.381 0.00 0.00 0.00 5.25
643 898 3.951680 ACAAGTTCCCGAAACAGTTCATT 59.048 39.130 3.92 0.00 40.56 2.57
746 1004 5.758296 TCGAGTTAATAATGCACAGAATCCC 59.242 40.000 0.00 0.00 0.00 3.85
780 1038 4.771114 TTGTGATAGGTGGGTTATGGAG 57.229 45.455 0.00 0.00 0.00 3.86
785 1043 8.426489 GTCTGTATATTTGTGATAGGTGGGTTA 58.574 37.037 0.00 0.00 0.00 2.85
1052 1325 1.615883 ACAGATATCTACAGCCGGCAG 59.384 52.381 31.54 24.99 0.00 4.85
1056 1329 3.437049 TCGATGACAGATATCTACAGCCG 59.563 47.826 4.54 14.53 0.00 5.52
1179 1452 2.028476 CGTCATCTTCACTGTGGGGTTA 60.028 50.000 8.11 0.00 0.00 2.85
1324 1597 0.478507 GAGAGGAGAGGAGAGGAGGG 59.521 65.000 0.00 0.00 0.00 4.30
1338 1611 0.831288 AGATGAGATGGCCGGAGAGG 60.831 60.000 5.05 0.00 44.97 3.69
1339 1612 0.317799 CAGATGAGATGGCCGGAGAG 59.682 60.000 5.05 0.00 0.00 3.20
1340 1613 0.397675 ACAGATGAGATGGCCGGAGA 60.398 55.000 5.05 0.00 0.00 3.71
1341 1614 1.000283 GTACAGATGAGATGGCCGGAG 60.000 57.143 5.05 0.00 0.00 4.63
1342 1615 1.040646 GTACAGATGAGATGGCCGGA 58.959 55.000 5.05 0.00 0.00 5.14
1398 1673 0.249911 ACCTGAAGAGCGACAACACC 60.250 55.000 0.00 0.00 0.00 4.16
1494 1774 4.352600 TGCTCGAGTACTGTAAACTAGC 57.647 45.455 15.13 0.00 31.86 3.42
1523 1803 5.604231 TGGTCTTTATAGTCATGATCAGGCT 59.396 40.000 1.57 6.06 0.00 4.58
1524 1804 5.858381 TGGTCTTTATAGTCATGATCAGGC 58.142 41.667 1.57 0.00 0.00 4.85
1527 1807 9.494271 GCTTATTGGTCTTTATAGTCATGATCA 57.506 33.333 0.00 0.00 0.00 2.92
1528 1808 9.717942 AGCTTATTGGTCTTTATAGTCATGATC 57.282 33.333 0.00 0.00 0.00 2.92
1529 1809 9.717942 GAGCTTATTGGTCTTTATAGTCATGAT 57.282 33.333 0.00 0.00 39.86 2.45
1530 1810 8.704668 TGAGCTTATTGGTCTTTATAGTCATGA 58.295 33.333 0.00 0.00 43.13 3.07
1531 1811 8.893219 TGAGCTTATTGGTCTTTATAGTCATG 57.107 34.615 0.00 0.00 43.13 3.07
1532 1812 7.659390 GCTGAGCTTATTGGTCTTTATAGTCAT 59.341 37.037 0.00 0.00 43.13 3.06
1533 1813 6.986817 GCTGAGCTTATTGGTCTTTATAGTCA 59.013 38.462 0.00 0.00 43.13 3.41
1657 1977 7.121315 GTCAAGTTTTATGTCCATAGGAAAGCT 59.879 37.037 0.00 0.00 31.38 3.74
1707 2027 7.064371 GCATAGCTGGTCATATAAATCTGACTG 59.936 40.741 0.00 4.19 41.21 3.51
1708 2028 7.102346 GCATAGCTGGTCATATAAATCTGACT 58.898 38.462 0.00 0.00 41.21 3.41
1757 2079 2.862536 CGATCCTGCATACACAAGTCAG 59.137 50.000 0.00 0.00 0.00 3.51
1782 2115 2.779430 TCTGTGGTGCCAGGAATATCAT 59.221 45.455 0.00 0.00 33.14 2.45
1838 2172 3.861886 GCCAATCAGCAAAAGCTAAAGCA 60.862 43.478 4.54 0.00 45.16 3.91
1845 2179 1.078918 GGGGCCAATCAGCAAAAGC 60.079 57.895 4.39 0.00 0.00 3.51
1992 2338 0.914417 GTGGAGGGAGGGTTCATGGA 60.914 60.000 0.00 0.00 0.00 3.41
2226 2578 5.695851 CTCACAAGCAAACTCTTATTGGT 57.304 39.130 0.00 0.00 39.98 3.67
2459 2812 5.284864 CAGTCAACACTAGTATGCATCGAT 58.715 41.667 0.19 0.00 0.00 3.59
2460 2813 4.440112 CCAGTCAACACTAGTATGCATCGA 60.440 45.833 0.19 0.00 0.00 3.59
2809 3169 9.717942 AGCAGCCATTTTAACATTATAAAAACA 57.282 25.926 0.00 0.00 38.03 2.83
2811 3171 9.935241 TCAGCAGCCATTTTAACATTATAAAAA 57.065 25.926 0.00 0.00 38.03 1.94
2826 3186 2.421670 CCTCTTCTCATCAGCAGCCATT 60.422 50.000 0.00 0.00 0.00 3.16
2860 3220 1.101195 AAATGATGGGGAAAGGGGGT 58.899 50.000 0.00 0.00 0.00 4.95
2932 3293 7.079182 TCGGTTGGTTGCTTTATATACAAAG 57.921 36.000 0.00 0.00 38.34 2.77
2933 3294 7.306953 GTTCGGTTGGTTGCTTTATATACAAA 58.693 34.615 0.00 0.00 0.00 2.83
2934 3295 6.127952 GGTTCGGTTGGTTGCTTTATATACAA 60.128 38.462 0.00 0.00 0.00 2.41
2935 3296 5.354792 GGTTCGGTTGGTTGCTTTATATACA 59.645 40.000 0.00 0.00 0.00 2.29
2936 3297 5.354792 TGGTTCGGTTGGTTGCTTTATATAC 59.645 40.000 0.00 0.00 0.00 1.47
2937 3298 5.498393 TGGTTCGGTTGGTTGCTTTATATA 58.502 37.500 0.00 0.00 0.00 0.86
2938 3299 4.337145 TGGTTCGGTTGGTTGCTTTATAT 58.663 39.130 0.00 0.00 0.00 0.86
2939 3300 3.752665 TGGTTCGGTTGGTTGCTTTATA 58.247 40.909 0.00 0.00 0.00 0.98
2940 3301 2.588620 TGGTTCGGTTGGTTGCTTTAT 58.411 42.857 0.00 0.00 0.00 1.40
2941 3302 2.054232 TGGTTCGGTTGGTTGCTTTA 57.946 45.000 0.00 0.00 0.00 1.85
2942 3303 1.408969 ATGGTTCGGTTGGTTGCTTT 58.591 45.000 0.00 0.00 0.00 3.51
2943 3304 1.883926 GTATGGTTCGGTTGGTTGCTT 59.116 47.619 0.00 0.00 0.00 3.91
2944 3305 1.202830 TGTATGGTTCGGTTGGTTGCT 60.203 47.619 0.00 0.00 0.00 3.91
2945 3306 1.199097 CTGTATGGTTCGGTTGGTTGC 59.801 52.381 0.00 0.00 0.00 4.17
2946 3307 1.810151 CCTGTATGGTTCGGTTGGTTG 59.190 52.381 0.00 0.00 0.00 3.77
2947 3308 1.271707 CCCTGTATGGTTCGGTTGGTT 60.272 52.381 0.00 0.00 0.00 3.67
2948 3309 0.326927 CCCTGTATGGTTCGGTTGGT 59.673 55.000 0.00 0.00 0.00 3.67
2949 3310 0.616371 TCCCTGTATGGTTCGGTTGG 59.384 55.000 0.00 0.00 0.00 3.77
2950 3311 2.710096 ATCCCTGTATGGTTCGGTTG 57.290 50.000 0.00 0.00 0.00 3.77
2951 3312 2.704065 CCTATCCCTGTATGGTTCGGTT 59.296 50.000 0.00 0.00 0.00 4.44
2952 3313 2.326428 CCTATCCCTGTATGGTTCGGT 58.674 52.381 0.00 0.00 0.00 4.69
2953 3314 1.623811 CCCTATCCCTGTATGGTTCGG 59.376 57.143 0.00 0.00 0.00 4.30
2954 3315 1.623811 CCCCTATCCCTGTATGGTTCG 59.376 57.143 0.00 0.00 0.00 3.95
2955 3316 1.351350 GCCCCTATCCCTGTATGGTTC 59.649 57.143 0.00 0.00 0.00 3.62
2956 3317 1.060561 AGCCCCTATCCCTGTATGGTT 60.061 52.381 0.00 0.00 0.00 3.67
2957 3318 0.573279 AGCCCCTATCCCTGTATGGT 59.427 55.000 0.00 0.00 0.00 3.55
2958 3319 0.987294 CAGCCCCTATCCCTGTATGG 59.013 60.000 0.00 0.00 0.00 2.74
2959 3320 0.987294 CCAGCCCCTATCCCTGTATG 59.013 60.000 0.00 0.00 0.00 2.39
2960 3321 0.178861 CCCAGCCCCTATCCCTGTAT 60.179 60.000 0.00 0.00 0.00 2.29
2961 3322 1.238938 CCCAGCCCCTATCCCTGTA 59.761 63.158 0.00 0.00 0.00 2.74
2962 3323 2.039405 CCCAGCCCCTATCCCTGT 60.039 66.667 0.00 0.00 0.00 4.00
2963 3324 2.856000 CCCCAGCCCCTATCCCTG 60.856 72.222 0.00 0.00 0.00 4.45
2964 3325 4.928520 GCCCCAGCCCCTATCCCT 62.929 72.222 0.00 0.00 0.00 4.20
2968 3329 4.835456 TTCCGCCCCAGCCCCTAT 62.835 66.667 0.00 0.00 34.57 2.57
2979 3340 3.426568 GACTGTGCTGCTTCCGCC 61.427 66.667 0.00 0.00 34.43 6.13
2980 3341 2.666190 TGACTGTGCTGCTTCCGC 60.666 61.111 0.00 0.00 0.00 5.54
2981 3342 2.661566 CGTGACTGTGCTGCTTCCG 61.662 63.158 0.00 0.00 0.00 4.30
2982 3343 2.959357 GCGTGACTGTGCTGCTTCC 61.959 63.158 0.00 0.00 0.00 3.46
2983 3344 2.553268 GCGTGACTGTGCTGCTTC 59.447 61.111 0.00 0.00 0.00 3.86
2984 3345 2.974698 GGCGTGACTGTGCTGCTT 60.975 61.111 0.00 0.00 0.00 3.91
2985 3346 4.996434 GGGCGTGACTGTGCTGCT 62.996 66.667 0.00 0.00 0.00 4.24
2987 3348 1.723608 TTTTGGGCGTGACTGTGCTG 61.724 55.000 0.00 0.00 0.00 4.41
2988 3349 1.447317 CTTTTGGGCGTGACTGTGCT 61.447 55.000 0.00 0.00 0.00 4.40
2989 3350 1.008538 CTTTTGGGCGTGACTGTGC 60.009 57.895 0.00 0.00 0.00 4.57
2990 3351 1.021202 TTCTTTTGGGCGTGACTGTG 58.979 50.000 0.00 0.00 0.00 3.66
2991 3352 1.757682 TTTCTTTTGGGCGTGACTGT 58.242 45.000 0.00 0.00 0.00 3.55
2992 3353 2.357637 TCTTTTCTTTTGGGCGTGACTG 59.642 45.455 0.00 0.00 0.00 3.51
2993 3354 2.357952 GTCTTTTCTTTTGGGCGTGACT 59.642 45.455 0.00 0.00 0.00 3.41
2994 3355 2.098443 TGTCTTTTCTTTTGGGCGTGAC 59.902 45.455 0.00 0.00 0.00 3.67
2995 3356 2.357637 CTGTCTTTTCTTTTGGGCGTGA 59.642 45.455 0.00 0.00 0.00 4.35
2996 3357 2.357637 TCTGTCTTTTCTTTTGGGCGTG 59.642 45.455 0.00 0.00 0.00 5.34
2997 3358 2.618709 CTCTGTCTTTTCTTTTGGGCGT 59.381 45.455 0.00 0.00 0.00 5.68
2998 3359 2.878406 TCTCTGTCTTTTCTTTTGGGCG 59.122 45.455 0.00 0.00 0.00 6.13
2999 3360 4.918810 TTCTCTGTCTTTTCTTTTGGGC 57.081 40.909 0.00 0.00 0.00 5.36
3000 3361 6.699575 TCTTTCTCTGTCTTTTCTTTTGGG 57.300 37.500 0.00 0.00 0.00 4.12
3001 3362 7.538575 TGTTCTTTCTCTGTCTTTTCTTTTGG 58.461 34.615 0.00 0.00 0.00 3.28
3002 3363 8.970691 TTGTTCTTTCTCTGTCTTTTCTTTTG 57.029 30.769 0.00 0.00 0.00 2.44
3003 3364 9.631452 CTTTGTTCTTTCTCTGTCTTTTCTTTT 57.369 29.630 0.00 0.00 0.00 2.27
3004 3365 9.014297 TCTTTGTTCTTTCTCTGTCTTTTCTTT 57.986 29.630 0.00 0.00 0.00 2.52
3005 3366 8.567285 TCTTTGTTCTTTCTCTGTCTTTTCTT 57.433 30.769 0.00 0.00 0.00 2.52
3006 3367 8.567285 TTCTTTGTTCTTTCTCTGTCTTTTCT 57.433 30.769 0.00 0.00 0.00 2.52
3007 3368 9.066939 GTTTCTTTGTTCTTTCTCTGTCTTTTC 57.933 33.333 0.00 0.00 0.00 2.29
3008 3369 8.576442 TGTTTCTTTGTTCTTTCTCTGTCTTTT 58.424 29.630 0.00 0.00 0.00 2.27
3009 3370 8.110860 TGTTTCTTTGTTCTTTCTCTGTCTTT 57.889 30.769 0.00 0.00 0.00 2.52
3010 3371 7.687941 TGTTTCTTTGTTCTTTCTCTGTCTT 57.312 32.000 0.00 0.00 0.00 3.01
3011 3372 7.687941 TTGTTTCTTTGTTCTTTCTCTGTCT 57.312 32.000 0.00 0.00 0.00 3.41
3012 3373 8.801913 CATTTGTTTCTTTGTTCTTTCTCTGTC 58.198 33.333 0.00 0.00 0.00 3.51
3013 3374 7.276438 GCATTTGTTTCTTTGTTCTTTCTCTGT 59.724 33.333 0.00 0.00 0.00 3.41
3014 3375 7.254218 GGCATTTGTTTCTTTGTTCTTTCTCTG 60.254 37.037 0.00 0.00 0.00 3.35
3015 3376 6.758416 GGCATTTGTTTCTTTGTTCTTTCTCT 59.242 34.615 0.00 0.00 0.00 3.10
3016 3377 6.291796 CGGCATTTGTTTCTTTGTTCTTTCTC 60.292 38.462 0.00 0.00 0.00 2.87
3017 3378 5.519927 CGGCATTTGTTTCTTTGTTCTTTCT 59.480 36.000 0.00 0.00 0.00 2.52
3018 3379 5.518487 TCGGCATTTGTTTCTTTGTTCTTTC 59.482 36.000 0.00 0.00 0.00 2.62
3019 3380 5.415221 TCGGCATTTGTTTCTTTGTTCTTT 58.585 33.333 0.00 0.00 0.00 2.52
3020 3381 5.004922 TCGGCATTTGTTTCTTTGTTCTT 57.995 34.783 0.00 0.00 0.00 2.52
3021 3382 4.647424 TCGGCATTTGTTTCTTTGTTCT 57.353 36.364 0.00 0.00 0.00 3.01
3022 3383 7.411804 CCATTATCGGCATTTGTTTCTTTGTTC 60.412 37.037 0.00 0.00 0.00 3.18
3023 3384 6.368516 CCATTATCGGCATTTGTTTCTTTGTT 59.631 34.615 0.00 0.00 0.00 2.83
3024 3385 5.868801 CCATTATCGGCATTTGTTTCTTTGT 59.131 36.000 0.00 0.00 0.00 2.83
3025 3386 6.335176 CCATTATCGGCATTTGTTTCTTTG 57.665 37.500 0.00 0.00 0.00 2.77
3040 3401 3.961477 TTTGTTGATCCGCCATTATCG 57.039 42.857 0.00 0.00 0.00 2.92
3041 3402 4.499040 CGTTTTTGTTGATCCGCCATTATC 59.501 41.667 0.00 0.00 0.00 1.75
3042 3403 4.156922 TCGTTTTTGTTGATCCGCCATTAT 59.843 37.500 0.00 0.00 0.00 1.28
3043 3404 3.502595 TCGTTTTTGTTGATCCGCCATTA 59.497 39.130 0.00 0.00 0.00 1.90
3044 3405 2.294791 TCGTTTTTGTTGATCCGCCATT 59.705 40.909 0.00 0.00 0.00 3.16
3045 3406 1.883275 TCGTTTTTGTTGATCCGCCAT 59.117 42.857 0.00 0.00 0.00 4.40
3046 3407 1.309950 TCGTTTTTGTTGATCCGCCA 58.690 45.000 0.00 0.00 0.00 5.69
3047 3408 2.031508 TCTTCGTTTTTGTTGATCCGCC 60.032 45.455 0.00 0.00 0.00 6.13
3048 3409 3.262135 TCTTCGTTTTTGTTGATCCGC 57.738 42.857 0.00 0.00 0.00 5.54
3049 3410 3.664025 GCTTCTTCGTTTTTGTTGATCCG 59.336 43.478 0.00 0.00 0.00 4.18
3050 3411 3.981416 GGCTTCTTCGTTTTTGTTGATCC 59.019 43.478 0.00 0.00 0.00 3.36
3051 3412 4.860072 AGGCTTCTTCGTTTTTGTTGATC 58.140 39.130 0.00 0.00 0.00 2.92
3052 3413 4.554723 CGAGGCTTCTTCGTTTTTGTTGAT 60.555 41.667 0.00 0.00 0.00 2.57
3053 3414 3.242608 CGAGGCTTCTTCGTTTTTGTTGA 60.243 43.478 0.00 0.00 0.00 3.18
3054 3415 3.035942 CGAGGCTTCTTCGTTTTTGTTG 58.964 45.455 0.00 0.00 0.00 3.33
3055 3416 2.540973 GCGAGGCTTCTTCGTTTTTGTT 60.541 45.455 0.00 0.00 0.00 2.83
3056 3417 1.002792 GCGAGGCTTCTTCGTTTTTGT 60.003 47.619 0.00 0.00 0.00 2.83
3057 3418 1.674908 GCGAGGCTTCTTCGTTTTTG 58.325 50.000 0.00 0.00 0.00 2.44
3058 3419 0.234884 CGCGAGGCTTCTTCGTTTTT 59.765 50.000 0.00 0.00 0.00 1.94
3059 3420 0.599204 TCGCGAGGCTTCTTCGTTTT 60.599 50.000 3.71 0.00 0.00 2.43
3060 3421 1.006571 TCGCGAGGCTTCTTCGTTT 60.007 52.632 3.71 0.00 0.00 3.60
3061 3422 1.733399 GTCGCGAGGCTTCTTCGTT 60.733 57.895 10.24 0.00 0.00 3.85
3062 3423 2.126424 GTCGCGAGGCTTCTTCGT 60.126 61.111 10.24 0.00 0.00 3.85
3063 3424 2.881352 GGTCGCGAGGCTTCTTCG 60.881 66.667 10.24 0.00 34.89 3.79
3064 3425 2.095252 GTGGTCGCGAGGCTTCTTC 61.095 63.158 10.24 0.00 34.89 2.87
3065 3426 2.048127 GTGGTCGCGAGGCTTCTT 60.048 61.111 10.24 0.00 34.89 2.52
3066 3427 2.992114 AGTGGTCGCGAGGCTTCT 60.992 61.111 10.24 0.83 34.89 2.85
3067 3428 2.811317 CAGTGGTCGCGAGGCTTC 60.811 66.667 10.24 0.00 34.89 3.86
3081 3442 4.666253 AATGCTGGTGGGCGCAGT 62.666 61.111 10.83 0.00 39.82 4.40
3082 3443 2.824071 GAAAATGCTGGTGGGCGCAG 62.824 60.000 10.83 0.00 39.82 5.18
3083 3444 2.916703 AAAATGCTGGTGGGCGCA 60.917 55.556 10.83 0.00 40.87 6.09
3084 3445 2.125952 GAAAATGCTGGTGGGCGC 60.126 61.111 0.00 0.00 34.52 6.53
3085 3446 2.274645 TGGAAAATGCTGGTGGGCG 61.275 57.895 0.00 0.00 34.52 6.13
3086 3447 1.187567 AGTGGAAAATGCTGGTGGGC 61.188 55.000 0.00 0.00 0.00 5.36
3087 3448 2.094675 CTAGTGGAAAATGCTGGTGGG 58.905 52.381 0.00 0.00 0.00 4.61
3088 3449 2.094675 CCTAGTGGAAAATGCTGGTGG 58.905 52.381 0.00 0.00 34.57 4.61
3089 3450 1.474077 GCCTAGTGGAAAATGCTGGTG 59.526 52.381 0.00 0.00 34.57 4.17
3090 3451 1.355720 AGCCTAGTGGAAAATGCTGGT 59.644 47.619 0.00 0.00 34.57 4.00
3091 3452 2.019984 GAGCCTAGTGGAAAATGCTGG 58.980 52.381 0.00 0.00 34.57 4.85
3092 3453 2.019984 GGAGCCTAGTGGAAAATGCTG 58.980 52.381 0.00 0.00 34.57 4.41
3093 3454 1.635487 TGGAGCCTAGTGGAAAATGCT 59.365 47.619 0.00 0.00 34.57 3.79
3094 3455 2.128771 TGGAGCCTAGTGGAAAATGC 57.871 50.000 0.00 0.00 34.57 3.56
3095 3456 3.691609 GTCTTGGAGCCTAGTGGAAAATG 59.308 47.826 0.00 0.00 34.57 2.32
3096 3457 3.589288 AGTCTTGGAGCCTAGTGGAAAAT 59.411 43.478 0.00 0.00 34.57 1.82
3097 3458 2.979678 AGTCTTGGAGCCTAGTGGAAAA 59.020 45.455 0.00 0.00 34.57 2.29
3098 3459 2.567615 GAGTCTTGGAGCCTAGTGGAAA 59.432 50.000 0.00 0.00 34.57 3.13
3099 3460 2.180276 GAGTCTTGGAGCCTAGTGGAA 58.820 52.381 0.00 0.00 34.57 3.53
3100 3461 1.619977 GGAGTCTTGGAGCCTAGTGGA 60.620 57.143 0.00 0.00 34.57 4.02
3101 3462 0.827368 GGAGTCTTGGAGCCTAGTGG 59.173 60.000 0.00 0.00 0.00 4.00
3102 3463 0.457851 CGGAGTCTTGGAGCCTAGTG 59.542 60.000 0.00 0.00 0.00 2.74
3103 3464 0.684805 CCGGAGTCTTGGAGCCTAGT 60.685 60.000 0.00 0.00 0.00 2.57
3104 3465 0.395862 TCCGGAGTCTTGGAGCCTAG 60.396 60.000 0.00 0.00 0.00 3.02
3105 3466 0.395862 CTCCGGAGTCTTGGAGCCTA 60.396 60.000 24.04 0.00 44.83 3.93
3106 3467 1.684049 CTCCGGAGTCTTGGAGCCT 60.684 63.158 24.04 0.00 44.83 4.58
3107 3468 2.896443 CTCCGGAGTCTTGGAGCC 59.104 66.667 24.04 0.00 44.83 4.70
3110 3471 3.760035 GCGCTCCGGAGTCTTGGA 61.760 66.667 31.43 4.85 0.00 3.53
3111 3472 4.821589 GGCGCTCCGGAGTCTTGG 62.822 72.222 31.43 16.68 0.00 3.61
3121 3482 4.971125 GATAGGTGCCGGCGCTCC 62.971 72.222 36.63 28.75 46.98 4.70
3122 3483 3.733344 TTGATAGGTGCCGGCGCTC 62.733 63.158 36.63 26.88 35.36 5.03
3123 3484 3.781307 TTGATAGGTGCCGGCGCT 61.781 61.111 36.63 24.87 35.36 5.92
3124 3485 3.573491 GTTGATAGGTGCCGGCGC 61.573 66.667 31.86 31.86 0.00 6.53
3125 3486 2.125310 TGTTGATAGGTGCCGGCG 60.125 61.111 23.90 0.00 0.00 6.46
3126 3487 2.112815 GGTGTTGATAGGTGCCGGC 61.113 63.158 22.73 22.73 0.00 6.13
3127 3488 0.462047 GAGGTGTTGATAGGTGCCGG 60.462 60.000 0.00 0.00 0.00 6.13
3128 3489 0.462047 GGAGGTGTTGATAGGTGCCG 60.462 60.000 0.00 0.00 0.00 5.69
3129 3490 0.618458 TGGAGGTGTTGATAGGTGCC 59.382 55.000 0.00 0.00 0.00 5.01
3130 3491 2.027192 TCTTGGAGGTGTTGATAGGTGC 60.027 50.000 0.00 0.00 0.00 5.01
3131 3492 3.981071 TCTTGGAGGTGTTGATAGGTG 57.019 47.619 0.00 0.00 0.00 4.00
3132 3493 3.264450 CCTTCTTGGAGGTGTTGATAGGT 59.736 47.826 0.00 0.00 38.35 3.08
3133 3494 3.519510 TCCTTCTTGGAGGTGTTGATAGG 59.480 47.826 0.00 0.00 40.56 2.57
3134 3495 4.826274 TCCTTCTTGGAGGTGTTGATAG 57.174 45.455 0.00 0.00 40.56 2.08
3145 3506 2.623623 ATCGTCGCGATCCTTCTTGGA 61.624 52.381 14.06 0.00 43.45 3.53
3146 3507 0.249073 ATCGTCGCGATCCTTCTTGG 60.249 55.000 14.06 0.00 43.45 3.61
3147 3508 0.848942 CATCGTCGCGATCCTTCTTG 59.151 55.000 14.06 0.00 45.19 3.02
3148 3509 0.738975 TCATCGTCGCGATCCTTCTT 59.261 50.000 14.06 0.00 45.19 2.52
3149 3510 0.029567 GTCATCGTCGCGATCCTTCT 59.970 55.000 14.06 0.00 45.19 2.85
3150 3511 1.262824 CGTCATCGTCGCGATCCTTC 61.263 60.000 14.06 0.00 45.19 3.46
3151 3512 1.298413 CGTCATCGTCGCGATCCTT 60.298 57.895 14.06 0.00 45.19 3.36
3152 3513 2.178235 TCGTCATCGTCGCGATCCT 61.178 57.895 14.06 0.00 45.19 3.24
3153 3514 2.004489 GTCGTCATCGTCGCGATCC 61.004 63.158 14.06 0.00 45.19 3.36
3154 3515 2.340595 CGTCGTCATCGTCGCGATC 61.341 63.158 14.06 5.25 45.19 3.69
3159 3520 0.919873 CAGTAGCGTCGTCATCGTCG 60.920 60.000 0.00 3.42 46.99 5.12
3160 3521 1.194896 GCAGTAGCGTCGTCATCGTC 61.195 60.000 0.00 0.00 38.33 4.20
3161 3522 1.226323 GCAGTAGCGTCGTCATCGT 60.226 57.895 0.00 0.00 38.33 3.73
3162 3523 1.939785 GGCAGTAGCGTCGTCATCG 60.940 63.158 0.00 0.00 43.41 3.84
3163 3524 0.457853 TTGGCAGTAGCGTCGTCATC 60.458 55.000 0.00 0.00 43.41 2.92
3164 3525 0.458543 CTTGGCAGTAGCGTCGTCAT 60.459 55.000 0.00 0.00 43.41 3.06
3165 3526 1.080772 CTTGGCAGTAGCGTCGTCA 60.081 57.895 0.00 0.00 43.41 4.35
3166 3527 1.805945 CCTTGGCAGTAGCGTCGTC 60.806 63.158 0.00 0.00 43.41 4.20
3167 3528 1.605058 ATCCTTGGCAGTAGCGTCGT 61.605 55.000 0.00 0.00 43.41 4.34
3168 3529 0.460284 AATCCTTGGCAGTAGCGTCG 60.460 55.000 0.00 0.00 43.41 5.12
3169 3530 1.739067 AAATCCTTGGCAGTAGCGTC 58.261 50.000 0.00 0.00 43.41 5.19
3170 3531 2.084546 GAAAATCCTTGGCAGTAGCGT 58.915 47.619 0.00 0.00 43.41 5.07
3171 3532 1.401905 GGAAAATCCTTGGCAGTAGCG 59.598 52.381 0.00 0.00 35.96 4.26
3172 3533 1.751351 GGGAAAATCCTTGGCAGTAGC 59.249 52.381 0.00 0.00 36.57 3.58
3173 3534 2.379005 GGGGAAAATCCTTGGCAGTAG 58.621 52.381 0.00 0.00 36.57 2.57
3174 3535 1.340600 CGGGGAAAATCCTTGGCAGTA 60.341 52.381 0.00 0.00 36.57 2.74
3175 3536 0.611896 CGGGGAAAATCCTTGGCAGT 60.612 55.000 0.00 0.00 36.57 4.40
3176 3537 1.322538 CCGGGGAAAATCCTTGGCAG 61.323 60.000 0.00 0.00 36.57 4.85
3177 3538 1.304879 CCGGGGAAAATCCTTGGCA 60.305 57.895 0.00 0.00 36.57 4.92
3178 3539 0.033894 TACCGGGGAAAATCCTTGGC 60.034 55.000 6.32 0.00 36.57 4.52
3179 3540 1.004979 TGTACCGGGGAAAATCCTTGG 59.995 52.381 6.32 1.69 36.57 3.61
3180 3541 2.089201 GTGTACCGGGGAAAATCCTTG 58.911 52.381 6.32 0.00 36.57 3.61
3181 3542 1.339342 CGTGTACCGGGGAAAATCCTT 60.339 52.381 6.32 0.00 36.57 3.36
3182 3543 0.251073 CGTGTACCGGGGAAAATCCT 59.749 55.000 6.32 0.00 36.57 3.24
3183 3544 0.249955 TCGTGTACCGGGGAAAATCC 59.750 55.000 6.32 0.00 37.11 3.01
3184 3545 1.362768 GTCGTGTACCGGGGAAAATC 58.637 55.000 6.32 0.00 37.11 2.17
3185 3546 0.390209 CGTCGTGTACCGGGGAAAAT 60.390 55.000 6.32 0.00 37.11 1.82
3186 3547 1.006337 CGTCGTGTACCGGGGAAAA 60.006 57.895 6.32 0.00 37.11 2.29
3187 3548 1.865788 CTCGTCGTGTACCGGGGAAA 61.866 60.000 6.32 0.00 37.11 3.13
3188 3549 2.282110 TCGTCGTGTACCGGGGAA 60.282 61.111 6.32 0.00 37.11 3.97
3189 3550 2.747460 CTCGTCGTGTACCGGGGA 60.747 66.667 6.32 0.00 37.11 4.81
3190 3551 3.818787 CCTCGTCGTGTACCGGGG 61.819 72.222 6.32 0.00 38.56 5.73
3191 3552 4.487412 GCCTCGTCGTGTACCGGG 62.487 72.222 6.32 0.00 37.11 5.73
3192 3553 4.824166 CGCCTCGTCGTGTACCGG 62.824 72.222 0.00 0.00 37.11 5.28
3193 3554 3.713615 CTCGCCTCGTCGTGTACCG 62.714 68.421 0.00 0.00 38.13 4.02
3194 3555 2.099831 CTCGCCTCGTCGTGTACC 59.900 66.667 0.00 0.00 0.00 3.34
3195 3556 1.060622 CTCTCGCCTCGTCGTGTAC 59.939 63.158 0.00 0.00 0.00 2.90
3196 3557 2.104859 CCTCTCGCCTCGTCGTGTA 61.105 63.158 0.00 0.00 0.00 2.90
3197 3558 3.432588 CCTCTCGCCTCGTCGTGT 61.433 66.667 0.00 0.00 0.00 4.49
3198 3559 2.585170 CTTCCTCTCGCCTCGTCGTG 62.585 65.000 0.00 0.00 0.00 4.35
3199 3560 2.359602 TTCCTCTCGCCTCGTCGT 60.360 61.111 0.00 0.00 0.00 4.34
3200 3561 2.405594 CTTCCTCTCGCCTCGTCG 59.594 66.667 0.00 0.00 0.00 5.12
3201 3562 1.104577 ATCCTTCCTCTCGCCTCGTC 61.105 60.000 0.00 0.00 0.00 4.20
3202 3563 0.183014 TATCCTTCCTCTCGCCTCGT 59.817 55.000 0.00 0.00 0.00 4.18
3203 3564 0.878416 CTATCCTTCCTCTCGCCTCG 59.122 60.000 0.00 0.00 0.00 4.63
3204 3565 0.601057 GCTATCCTTCCTCTCGCCTC 59.399 60.000 0.00 0.00 0.00 4.70
3205 3566 0.830023 GGCTATCCTTCCTCTCGCCT 60.830 60.000 0.00 0.00 33.47 5.52
3206 3567 1.668867 GGCTATCCTTCCTCTCGCC 59.331 63.158 0.00 0.00 0.00 5.54
3207 3568 1.668867 GGGCTATCCTTCCTCTCGC 59.331 63.158 0.00 0.00 0.00 5.03
3208 3569 1.188871 GGGGGCTATCCTTCCTCTCG 61.189 65.000 0.00 0.00 35.33 4.04
3209 3570 1.188871 CGGGGGCTATCCTTCCTCTC 61.189 65.000 0.00 0.00 35.33 3.20
3210 3571 1.152226 CGGGGGCTATCCTTCCTCT 60.152 63.158 0.00 0.00 35.33 3.69
3211 3572 1.152312 TCGGGGGCTATCCTTCCTC 60.152 63.158 0.00 0.00 35.33 3.71
3212 3573 1.459730 GTCGGGGGCTATCCTTCCT 60.460 63.158 0.00 0.00 35.33 3.36
3213 3574 2.868986 CGTCGGGGGCTATCCTTCC 61.869 68.421 0.00 0.00 35.33 3.46
3214 3575 2.735237 CGTCGGGGGCTATCCTTC 59.265 66.667 0.00 0.00 35.33 3.46
3215 3576 3.547513 GCGTCGGGGGCTATCCTT 61.548 66.667 0.00 0.00 35.33 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.