Multiple sequence alignment - TraesCS2B01G310500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G310500 chr2B 100.000 3666 0 0 1 3666 443267511 443263846 0.000000e+00 6770.0
1 TraesCS2B01G310500 chr2B 80.375 586 105 7 1596 2179 730614651 730614074 1.560000e-118 436.0
2 TraesCS2B01G310500 chr2A 91.158 2669 155 45 254 2871 505336533 505333895 0.000000e+00 3546.0
3 TraesCS2B01G310500 chr2A 81.122 588 97 8 1596 2179 734091737 734091160 3.340000e-125 459.0
4 TraesCS2B01G310500 chr2D 93.973 2190 92 26 713 2871 373760799 373758619 0.000000e+00 3277.0
5 TraesCS2B01G310500 chr2D 80.475 589 99 10 1596 2179 600407742 600407165 1.560000e-118 436.0
6 TraesCS2B01G310500 chr2D 78.596 285 29 21 372 646 373806586 373806324 3.790000e-35 159.0
7 TraesCS2B01G310500 chr4A 94.396 803 36 4 2868 3663 545836664 545837464 0.000000e+00 1225.0
8 TraesCS2B01G310500 chr4A 95.047 424 20 1 2868 3290 16840414 16840837 0.000000e+00 665.0
9 TraesCS2B01G310500 chr4A 81.818 363 46 8 3206 3555 309477280 309476925 1.670000e-73 287.0
10 TraesCS2B01G310500 chr4A 81.267 363 48 7 3206 3555 350847089 350846734 3.610000e-70 276.0
11 TraesCS2B01G310500 chr7D 90.013 771 49 8 2905 3647 59472247 59473017 0.000000e+00 972.0
12 TraesCS2B01G310500 chr7D 97.561 41 1 0 2868 2908 629258489 629258449 1.830000e-08 71.3
13 TraesCS2B01G310500 chr5D 80.409 587 103 9 1593 2176 217333546 217334123 1.560000e-118 436.0
14 TraesCS2B01G310500 chr5A 80.205 586 106 7 1593 2176 290074060 290074637 7.270000e-117 431.0
15 TraesCS2B01G310500 chr6D 82.320 362 44 7 3206 3555 38564082 38564435 2.770000e-76 296.0
16 TraesCS2B01G310500 chr7A 76.277 607 110 20 1593 2176 728290506 728291101 3.580000e-75 292.0
17 TraesCS2B01G310500 chr7A 81.405 242 36 4 3206 3439 455696120 455696360 4.830000e-44 189.0
18 TraesCS2B01G310500 chr3D 79.859 427 56 19 3206 3612 478950456 478950040 5.990000e-73 285.0
19 TraesCS2B01G310500 chr3D 97.561 41 1 0 2868 2908 304398995 304399035 1.830000e-08 71.3
20 TraesCS2B01G310500 chr6B 77.583 513 74 23 3073 3558 266830661 266830163 4.660000e-69 272.0
21 TraesCS2B01G310500 chr6B 80.769 364 47 11 3206 3557 90024087 90024439 2.810000e-66 263.0
22 TraesCS2B01G310500 chr3A 81.290 310 40 8 3206 3503 6673094 6672791 6.120000e-58 235.0
23 TraesCS2B01G310500 chr7B 82.609 230 30 6 3210 3431 418195852 418196079 1.040000e-45 195.0
24 TraesCS2B01G310500 chr7B 95.556 45 2 0 2865 2909 244663300 244663256 5.080000e-09 73.1
25 TraesCS2B01G310500 chr7B 95.455 44 2 0 2863 2906 671584312 671584355 1.830000e-08 71.3
26 TraesCS2B01G310500 chr1D 97.778 45 0 1 2864 2907 436456641 436456597 3.930000e-10 76.8
27 TraesCS2B01G310500 chr1A 97.561 41 1 0 2864 2904 201853884 201853844 1.830000e-08 71.3
28 TraesCS2B01G310500 chr4B 89.091 55 5 1 2865 2918 662086127 662086073 2.360000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G310500 chr2B 443263846 443267511 3665 True 6770 6770 100.000 1 3666 1 chr2B.!!$R1 3665
1 TraesCS2B01G310500 chr2B 730614074 730614651 577 True 436 436 80.375 1596 2179 1 chr2B.!!$R2 583
2 TraesCS2B01G310500 chr2A 505333895 505336533 2638 True 3546 3546 91.158 254 2871 1 chr2A.!!$R1 2617
3 TraesCS2B01G310500 chr2A 734091160 734091737 577 True 459 459 81.122 1596 2179 1 chr2A.!!$R2 583
4 TraesCS2B01G310500 chr2D 373758619 373760799 2180 True 3277 3277 93.973 713 2871 1 chr2D.!!$R1 2158
5 TraesCS2B01G310500 chr2D 600407165 600407742 577 True 436 436 80.475 1596 2179 1 chr2D.!!$R3 583
6 TraesCS2B01G310500 chr4A 545836664 545837464 800 False 1225 1225 94.396 2868 3663 1 chr4A.!!$F2 795
7 TraesCS2B01G310500 chr7D 59472247 59473017 770 False 972 972 90.013 2905 3647 1 chr7D.!!$F1 742
8 TraesCS2B01G310500 chr5D 217333546 217334123 577 False 436 436 80.409 1593 2176 1 chr5D.!!$F1 583
9 TraesCS2B01G310500 chr5A 290074060 290074637 577 False 431 431 80.205 1593 2176 1 chr5A.!!$F1 583
10 TraesCS2B01G310500 chr7A 728290506 728291101 595 False 292 292 76.277 1593 2176 1 chr7A.!!$F2 583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
257 258 0.034896 GAGCTCAACGTTGGGAAGGA 59.965 55.0 31.85 8.64 0.0 3.36 F
680 747 0.036952 TCTCTACTTGCCTGCTGTGC 60.037 55.0 0.00 0.00 0.0 4.57 F
2207 2301 0.248825 CCTCTCCGACTTGATCTGCG 60.249 60.0 0.00 0.00 0.0 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1401 1468 1.062886 TCAGGATCCAGAGGTCCGATT 60.063 52.381 15.82 0.0 39.54 3.34 R
2295 2389 1.061411 CGCCGATTGTGATGTGCAG 59.939 57.895 0.00 0.0 0.00 4.41 R
3166 3317 0.179062 GAGATGCAGGATGAGCGGTT 60.179 55.000 0.00 0.0 39.69 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.229921 TCTTTTTATCTACGGTGCATTGC 57.770 39.130 0.46 0.46 0.00 3.56
24 25 4.941263 TCTTTTTATCTACGGTGCATTGCT 59.059 37.500 10.49 0.00 0.00 3.91
25 26 6.110033 TCTTTTTATCTACGGTGCATTGCTA 58.890 36.000 10.49 0.00 0.00 3.49
26 27 5.984233 TTTTATCTACGGTGCATTGCTAG 57.016 39.130 10.49 3.42 0.00 3.42
27 28 4.665833 TTATCTACGGTGCATTGCTAGT 57.334 40.909 10.49 9.39 0.00 2.57
28 29 5.777850 TTATCTACGGTGCATTGCTAGTA 57.222 39.130 10.49 9.99 0.00 1.82
29 30 4.873746 ATCTACGGTGCATTGCTAGTAT 57.126 40.909 10.49 0.00 0.00 2.12
30 31 3.977427 TCTACGGTGCATTGCTAGTATG 58.023 45.455 10.49 0.00 0.00 2.39
31 32 1.953559 ACGGTGCATTGCTAGTATGG 58.046 50.000 10.49 0.00 0.00 2.74
32 33 1.484653 ACGGTGCATTGCTAGTATGGA 59.515 47.619 10.49 3.86 0.00 3.41
33 34 2.104792 ACGGTGCATTGCTAGTATGGAT 59.895 45.455 10.49 0.00 0.00 3.41
34 35 3.323691 ACGGTGCATTGCTAGTATGGATA 59.676 43.478 10.49 0.00 0.00 2.59
35 36 4.020218 ACGGTGCATTGCTAGTATGGATAT 60.020 41.667 10.49 0.00 0.00 1.63
36 37 4.330894 CGGTGCATTGCTAGTATGGATATG 59.669 45.833 10.49 0.00 0.00 1.78
37 38 5.491070 GGTGCATTGCTAGTATGGATATGA 58.509 41.667 10.49 0.00 0.00 2.15
38 39 5.583854 GGTGCATTGCTAGTATGGATATGAG 59.416 44.000 10.49 0.00 0.00 2.90
39 40 6.401394 GTGCATTGCTAGTATGGATATGAGA 58.599 40.000 10.49 0.00 0.00 3.27
40 41 6.875726 GTGCATTGCTAGTATGGATATGAGAA 59.124 38.462 10.49 0.00 0.00 2.87
41 42 7.388776 GTGCATTGCTAGTATGGATATGAGAAA 59.611 37.037 10.49 0.00 0.00 2.52
42 43 7.388776 TGCATTGCTAGTATGGATATGAGAAAC 59.611 37.037 10.49 0.00 0.00 2.78
43 44 7.148340 GCATTGCTAGTATGGATATGAGAAACC 60.148 40.741 0.16 0.00 0.00 3.27
44 45 6.025749 TGCTAGTATGGATATGAGAAACCG 57.974 41.667 0.00 0.00 0.00 4.44
45 46 5.047306 TGCTAGTATGGATATGAGAAACCGG 60.047 44.000 0.00 0.00 0.00 5.28
46 47 5.185249 GCTAGTATGGATATGAGAAACCGGA 59.815 44.000 9.46 0.00 0.00 5.14
47 48 6.127310 GCTAGTATGGATATGAGAAACCGGAT 60.127 42.308 9.46 0.00 0.00 4.18
48 49 7.068348 GCTAGTATGGATATGAGAAACCGGATA 59.932 40.741 9.46 0.00 0.00 2.59
49 50 7.979786 AGTATGGATATGAGAAACCGGATAT 57.020 36.000 9.46 0.00 0.00 1.63
50 51 7.786030 AGTATGGATATGAGAAACCGGATATG 58.214 38.462 9.46 0.00 0.00 1.78
51 52 6.874278 ATGGATATGAGAAACCGGATATGA 57.126 37.500 9.46 0.00 0.00 2.15
52 53 6.286240 TGGATATGAGAAACCGGATATGAG 57.714 41.667 9.46 0.00 0.00 2.90
53 54 6.016555 TGGATATGAGAAACCGGATATGAGA 58.983 40.000 9.46 0.00 0.00 3.27
54 55 6.669591 TGGATATGAGAAACCGGATATGAGAT 59.330 38.462 9.46 0.00 0.00 2.75
55 56 7.839200 TGGATATGAGAAACCGGATATGAGATA 59.161 37.037 9.46 0.00 0.00 1.98
56 57 8.865090 GGATATGAGAAACCGGATATGAGATAT 58.135 37.037 9.46 1.31 0.00 1.63
59 60 7.085052 TGAGAAACCGGATATGAGATATACG 57.915 40.000 9.46 1.81 46.58 3.06
66 67 5.340803 CGGATATGAGATATACGGTTGTGG 58.659 45.833 0.93 0.00 44.01 4.17
67 68 5.124936 CGGATATGAGATATACGGTTGTGGA 59.875 44.000 0.93 0.00 44.01 4.02
68 69 6.331061 GGATATGAGATATACGGTTGTGGAC 58.669 44.000 0.00 0.00 0.00 4.02
69 70 3.703286 TGAGATATACGGTTGTGGACG 57.297 47.619 0.00 0.00 0.00 4.79
70 71 3.281158 TGAGATATACGGTTGTGGACGA 58.719 45.455 0.00 0.00 0.00 4.20
71 72 3.065786 TGAGATATACGGTTGTGGACGAC 59.934 47.826 0.00 0.00 0.00 4.34
72 73 3.018856 AGATATACGGTTGTGGACGACA 58.981 45.455 0.00 0.00 31.82 4.35
73 74 2.925578 TATACGGTTGTGGACGACAG 57.074 50.000 0.00 0.00 35.44 3.51
74 75 0.245539 ATACGGTTGTGGACGACAGG 59.754 55.000 0.00 0.00 35.44 4.00
75 76 0.822944 TACGGTTGTGGACGACAGGA 60.823 55.000 0.00 0.00 35.44 3.86
76 77 1.292223 CGGTTGTGGACGACAGGAT 59.708 57.895 0.00 0.00 35.44 3.24
77 78 0.320421 CGGTTGTGGACGACAGGATT 60.320 55.000 0.00 0.00 35.44 3.01
78 79 1.876416 CGGTTGTGGACGACAGGATTT 60.876 52.381 0.00 0.00 35.44 2.17
79 80 2.610976 CGGTTGTGGACGACAGGATTTA 60.611 50.000 0.00 0.00 35.44 1.40
80 81 3.404899 GGTTGTGGACGACAGGATTTAA 58.595 45.455 0.00 0.00 35.44 1.52
81 82 3.435671 GGTTGTGGACGACAGGATTTAAG 59.564 47.826 0.00 0.00 35.44 1.85
82 83 3.328382 TGTGGACGACAGGATTTAAGG 57.672 47.619 0.00 0.00 0.00 2.69
83 84 2.027561 TGTGGACGACAGGATTTAAGGG 60.028 50.000 0.00 0.00 0.00 3.95
84 85 2.027469 GTGGACGACAGGATTTAAGGGT 60.027 50.000 0.00 0.00 0.00 4.34
85 86 2.640826 TGGACGACAGGATTTAAGGGTT 59.359 45.455 0.00 0.00 0.00 4.11
86 87 3.007635 GGACGACAGGATTTAAGGGTTG 58.992 50.000 0.00 0.00 0.00 3.77
87 88 2.418976 GACGACAGGATTTAAGGGTTGC 59.581 50.000 0.00 0.00 0.00 4.17
88 89 1.743394 CGACAGGATTTAAGGGTTGCC 59.257 52.381 0.00 0.00 0.00 4.52
89 90 2.618045 CGACAGGATTTAAGGGTTGCCT 60.618 50.000 0.00 0.00 0.00 4.75
90 91 3.370103 CGACAGGATTTAAGGGTTGCCTA 60.370 47.826 0.00 0.00 0.00 3.93
91 92 4.200092 GACAGGATTTAAGGGTTGCCTAG 58.800 47.826 0.00 0.00 0.00 3.02
92 93 3.591977 ACAGGATTTAAGGGTTGCCTAGT 59.408 43.478 0.00 0.00 0.00 2.57
93 94 4.200092 CAGGATTTAAGGGTTGCCTAGTC 58.800 47.826 0.00 0.00 0.00 2.59
94 95 3.850173 AGGATTTAAGGGTTGCCTAGTCA 59.150 43.478 0.00 0.00 0.00 3.41
95 96 4.080299 AGGATTTAAGGGTTGCCTAGTCAG 60.080 45.833 0.00 0.00 0.00 3.51
96 97 4.324331 GGATTTAAGGGTTGCCTAGTCAGT 60.324 45.833 0.00 0.00 0.00 3.41
97 98 3.695830 TTAAGGGTTGCCTAGTCAGTG 57.304 47.619 0.00 0.00 0.00 3.66
98 99 0.036875 AAGGGTTGCCTAGTCAGTGC 59.963 55.000 0.00 0.00 0.00 4.40
99 100 1.377333 GGGTTGCCTAGTCAGTGCC 60.377 63.158 0.00 0.00 0.00 5.01
100 101 1.377333 GGTTGCCTAGTCAGTGCCC 60.377 63.158 0.00 0.00 0.00 5.36
101 102 1.374947 GTTGCCTAGTCAGTGCCCA 59.625 57.895 0.00 0.00 0.00 5.36
102 103 0.955919 GTTGCCTAGTCAGTGCCCAC 60.956 60.000 0.00 0.00 0.00 4.61
103 104 2.125512 GCCTAGTCAGTGCCCACG 60.126 66.667 0.00 0.00 36.20 4.94
104 105 2.579201 CCTAGTCAGTGCCCACGG 59.421 66.667 0.00 0.00 36.20 4.94
105 106 1.982395 CCTAGTCAGTGCCCACGGA 60.982 63.158 0.00 0.00 36.20 4.69
134 135 3.403057 GCGTCTGCGAGCGTTTGA 61.403 61.111 0.00 0.00 41.33 2.69
135 136 2.765785 CGTCTGCGAGCGTTTGAG 59.234 61.111 0.00 0.00 41.33 3.02
136 137 2.016704 CGTCTGCGAGCGTTTGAGT 61.017 57.895 0.00 0.00 41.33 3.41
137 138 1.488957 GTCTGCGAGCGTTTGAGTG 59.511 57.895 0.00 0.00 0.00 3.51
138 139 1.664649 TCTGCGAGCGTTTGAGTGG 60.665 57.895 0.00 0.00 0.00 4.00
139 140 3.300667 CTGCGAGCGTTTGAGTGGC 62.301 63.158 0.00 0.00 0.00 5.01
140 141 4.090057 GCGAGCGTTTGAGTGGCC 62.090 66.667 0.00 0.00 0.00 5.36
141 142 3.777925 CGAGCGTTTGAGTGGCCG 61.778 66.667 0.00 0.00 0.00 6.13
142 143 3.423154 GAGCGTTTGAGTGGCCGG 61.423 66.667 0.00 0.00 0.00 6.13
143 144 3.876589 GAGCGTTTGAGTGGCCGGA 62.877 63.158 5.05 0.00 0.00 5.14
144 145 2.746277 GCGTTTGAGTGGCCGGAT 60.746 61.111 5.05 0.00 0.00 4.18
145 146 2.332654 GCGTTTGAGTGGCCGGATT 61.333 57.895 5.05 0.00 0.00 3.01
146 147 1.862602 GCGTTTGAGTGGCCGGATTT 61.863 55.000 5.05 0.00 0.00 2.17
147 148 0.109781 CGTTTGAGTGGCCGGATTTG 60.110 55.000 5.05 0.00 0.00 2.32
148 149 0.958822 GTTTGAGTGGCCGGATTTGT 59.041 50.000 5.05 0.00 0.00 2.83
149 150 2.156098 GTTTGAGTGGCCGGATTTGTA 58.844 47.619 5.05 0.00 0.00 2.41
150 151 2.554893 GTTTGAGTGGCCGGATTTGTAA 59.445 45.455 5.05 0.00 0.00 2.41
151 152 2.570415 TGAGTGGCCGGATTTGTAAA 57.430 45.000 5.05 0.00 0.00 2.01
152 153 2.432444 TGAGTGGCCGGATTTGTAAAG 58.568 47.619 5.05 0.00 0.00 1.85
153 154 2.224670 TGAGTGGCCGGATTTGTAAAGT 60.225 45.455 5.05 0.00 0.00 2.66
154 155 2.418976 GAGTGGCCGGATTTGTAAAGTC 59.581 50.000 5.05 0.00 0.00 3.01
161 162 3.211803 GGATTTGTAAAGTCCGGTTGC 57.788 47.619 0.00 0.00 43.07 4.17
162 163 2.554893 GGATTTGTAAAGTCCGGTTGCA 59.445 45.455 0.00 0.00 43.07 4.08
163 164 3.365969 GGATTTGTAAAGTCCGGTTGCAG 60.366 47.826 0.00 0.00 43.07 4.41
164 165 2.623878 TTGTAAAGTCCGGTTGCAGA 57.376 45.000 0.00 0.00 0.00 4.26
165 166 2.851263 TGTAAAGTCCGGTTGCAGAT 57.149 45.000 0.00 0.00 0.00 2.90
166 167 2.422597 TGTAAAGTCCGGTTGCAGATG 58.577 47.619 0.00 0.00 0.00 2.90
167 168 1.130561 GTAAAGTCCGGTTGCAGATGC 59.869 52.381 0.00 0.00 42.50 3.91
168 169 0.250901 AAAGTCCGGTTGCAGATGCT 60.251 50.000 0.00 0.00 42.66 3.79
169 170 0.674895 AAGTCCGGTTGCAGATGCTC 60.675 55.000 0.00 0.00 42.66 4.26
170 171 1.078848 GTCCGGTTGCAGATGCTCT 60.079 57.895 0.00 0.00 42.66 4.09
171 172 0.175760 GTCCGGTTGCAGATGCTCTA 59.824 55.000 0.00 0.00 42.66 2.43
172 173 0.901827 TCCGGTTGCAGATGCTCTAA 59.098 50.000 0.00 0.00 42.66 2.10
173 174 1.134699 TCCGGTTGCAGATGCTCTAAG 60.135 52.381 0.00 0.00 42.66 2.18
174 175 1.406069 CCGGTTGCAGATGCTCTAAGT 60.406 52.381 6.35 0.00 42.66 2.24
175 176 2.159099 CCGGTTGCAGATGCTCTAAGTA 60.159 50.000 6.35 0.00 42.66 2.24
176 177 3.521560 CGGTTGCAGATGCTCTAAGTAA 58.478 45.455 6.35 0.00 42.66 2.24
177 178 3.307242 CGGTTGCAGATGCTCTAAGTAAC 59.693 47.826 6.35 0.36 42.66 2.50
178 179 3.623510 GGTTGCAGATGCTCTAAGTAACC 59.376 47.826 6.35 5.88 42.66 2.85
179 180 4.508662 GTTGCAGATGCTCTAAGTAACCT 58.491 43.478 6.35 0.00 42.66 3.50
180 181 4.128925 TGCAGATGCTCTAAGTAACCTG 57.871 45.455 6.35 0.00 42.66 4.00
181 182 3.769300 TGCAGATGCTCTAAGTAACCTGA 59.231 43.478 6.35 0.00 42.66 3.86
182 183 4.222810 TGCAGATGCTCTAAGTAACCTGAA 59.777 41.667 6.35 0.00 42.66 3.02
183 184 5.104776 TGCAGATGCTCTAAGTAACCTGAAT 60.105 40.000 6.35 0.00 42.66 2.57
184 185 5.236047 GCAGATGCTCTAAGTAACCTGAATG 59.764 44.000 0.00 0.00 38.21 2.67
185 186 6.344500 CAGATGCTCTAAGTAACCTGAATGT 58.656 40.000 0.00 0.00 0.00 2.71
186 187 7.492524 CAGATGCTCTAAGTAACCTGAATGTA 58.507 38.462 0.00 0.00 0.00 2.29
187 188 7.651304 CAGATGCTCTAAGTAACCTGAATGTAG 59.349 40.741 0.00 0.00 0.00 2.74
188 189 7.561722 AGATGCTCTAAGTAACCTGAATGTAGA 59.438 37.037 0.00 0.00 0.00 2.59
189 190 7.476540 TGCTCTAAGTAACCTGAATGTAGAA 57.523 36.000 0.00 0.00 0.00 2.10
190 191 8.079211 TGCTCTAAGTAACCTGAATGTAGAAT 57.921 34.615 0.00 0.00 0.00 2.40
191 192 8.540388 TGCTCTAAGTAACCTGAATGTAGAATT 58.460 33.333 0.00 0.00 0.00 2.17
192 193 9.384764 GCTCTAAGTAACCTGAATGTAGAATTT 57.615 33.333 0.00 0.00 0.00 1.82
194 195 9.667107 TCTAAGTAACCTGAATGTAGAATTTGG 57.333 33.333 0.00 0.00 0.00 3.28
195 196 7.703058 AAGTAACCTGAATGTAGAATTTGGG 57.297 36.000 0.00 0.00 0.00 4.12
196 197 5.652452 AGTAACCTGAATGTAGAATTTGGGC 59.348 40.000 0.00 0.00 0.00 5.36
197 198 3.365472 ACCTGAATGTAGAATTTGGGCC 58.635 45.455 0.00 0.00 0.00 5.80
198 199 2.358898 CCTGAATGTAGAATTTGGGCCG 59.641 50.000 0.00 0.00 0.00 6.13
199 200 3.278574 CTGAATGTAGAATTTGGGCCGA 58.721 45.455 0.00 0.00 0.00 5.54
200 201 3.885297 CTGAATGTAGAATTTGGGCCGAT 59.115 43.478 0.00 0.00 0.00 4.18
201 202 4.277476 TGAATGTAGAATTTGGGCCGATT 58.723 39.130 0.00 1.23 0.00 3.34
202 203 4.709397 TGAATGTAGAATTTGGGCCGATTT 59.291 37.500 0.00 0.00 0.00 2.17
203 204 5.186797 TGAATGTAGAATTTGGGCCGATTTT 59.813 36.000 0.00 0.00 0.00 1.82
204 205 4.448537 TGTAGAATTTGGGCCGATTTTG 57.551 40.909 0.00 0.00 0.00 2.44
205 206 3.194542 TGTAGAATTTGGGCCGATTTTGG 59.805 43.478 0.00 0.00 0.00 3.28
206 207 2.256306 AGAATTTGGGCCGATTTTGGT 58.744 42.857 0.00 0.00 0.00 3.67
207 208 2.028203 AGAATTTGGGCCGATTTTGGTG 60.028 45.455 0.00 0.00 0.00 4.17
208 209 1.347062 ATTTGGGCCGATTTTGGTGT 58.653 45.000 0.00 0.00 0.00 4.16
209 210 0.390860 TTTGGGCCGATTTTGGTGTG 59.609 50.000 0.00 0.00 0.00 3.82
210 211 0.468214 TTGGGCCGATTTTGGTGTGA 60.468 50.000 0.00 0.00 0.00 3.58
211 212 0.468214 TGGGCCGATTTTGGTGTGAA 60.468 50.000 0.00 0.00 0.00 3.18
212 213 0.243636 GGGCCGATTTTGGTGTGAAG 59.756 55.000 0.00 0.00 0.00 3.02
213 214 0.243636 GGCCGATTTTGGTGTGAAGG 59.756 55.000 0.00 0.00 0.00 3.46
214 215 1.243902 GCCGATTTTGGTGTGAAGGA 58.756 50.000 0.00 0.00 0.00 3.36
215 216 1.611491 GCCGATTTTGGTGTGAAGGAA 59.389 47.619 0.00 0.00 0.00 3.36
216 217 2.351738 GCCGATTTTGGTGTGAAGGAAG 60.352 50.000 0.00 0.00 0.00 3.46
217 218 2.228822 CCGATTTTGGTGTGAAGGAAGG 59.771 50.000 0.00 0.00 0.00 3.46
218 219 3.146066 CGATTTTGGTGTGAAGGAAGGA 58.854 45.455 0.00 0.00 0.00 3.36
219 220 3.568007 CGATTTTGGTGTGAAGGAAGGAA 59.432 43.478 0.00 0.00 0.00 3.36
220 221 4.556699 CGATTTTGGTGTGAAGGAAGGAAC 60.557 45.833 0.00 0.00 0.00 3.62
221 222 3.374042 TTTGGTGTGAAGGAAGGAACA 57.626 42.857 0.00 0.00 0.00 3.18
222 223 3.374042 TTGGTGTGAAGGAAGGAACAA 57.626 42.857 0.00 0.00 0.00 2.83
223 224 2.650322 TGGTGTGAAGGAAGGAACAAC 58.350 47.619 0.00 0.00 0.00 3.32
224 225 1.954382 GGTGTGAAGGAAGGAACAACC 59.046 52.381 0.00 0.00 39.35 3.77
225 226 1.602377 GTGTGAAGGAAGGAACAACCG 59.398 52.381 0.00 0.00 44.74 4.44
226 227 1.235724 GTGAAGGAAGGAACAACCGG 58.764 55.000 0.00 0.00 44.74 5.28
227 228 1.133363 TGAAGGAAGGAACAACCGGA 58.867 50.000 9.46 0.00 44.74 5.14
228 229 1.071699 TGAAGGAAGGAACAACCGGAG 59.928 52.381 9.46 1.96 44.74 4.63
243 244 2.017138 CGGAGGAAAGGAAAGAGCTC 57.983 55.000 5.27 5.27 0.00 4.09
244 245 1.276421 CGGAGGAAAGGAAAGAGCTCA 59.724 52.381 17.77 0.00 0.00 4.26
245 246 2.289694 CGGAGGAAAGGAAAGAGCTCAA 60.290 50.000 17.77 0.00 0.00 3.02
246 247 3.078097 GGAGGAAAGGAAAGAGCTCAAC 58.922 50.000 17.77 6.39 0.00 3.18
247 248 2.739379 GAGGAAAGGAAAGAGCTCAACG 59.261 50.000 17.77 0.00 0.00 4.10
248 249 2.104963 AGGAAAGGAAAGAGCTCAACGT 59.895 45.455 17.77 5.41 0.00 3.99
249 250 2.879026 GGAAAGGAAAGAGCTCAACGTT 59.121 45.455 17.77 11.04 0.00 3.99
250 251 3.304057 GGAAAGGAAAGAGCTCAACGTTG 60.304 47.826 22.35 22.35 0.00 4.10
251 252 1.884235 AGGAAAGAGCTCAACGTTGG 58.116 50.000 27.02 18.35 0.00 3.77
252 253 0.875059 GGAAAGAGCTCAACGTTGGG 59.125 55.000 27.02 25.59 0.00 4.12
253 254 1.542547 GGAAAGAGCTCAACGTTGGGA 60.543 52.381 31.85 10.97 0.00 4.37
254 255 2.218603 GAAAGAGCTCAACGTTGGGAA 58.781 47.619 31.85 10.20 0.00 3.97
255 256 1.884235 AAGAGCTCAACGTTGGGAAG 58.116 50.000 31.85 20.13 0.00 3.46
256 257 0.035458 AGAGCTCAACGTTGGGAAGG 59.965 55.000 31.85 15.06 0.00 3.46
257 258 0.034896 GAGCTCAACGTTGGGAAGGA 59.965 55.000 31.85 8.64 0.00 3.36
258 259 0.472471 AGCTCAACGTTGGGAAGGAA 59.528 50.000 31.85 7.88 0.00 3.36
259 260 0.875059 GCTCAACGTTGGGAAGGAAG 59.125 55.000 31.85 18.00 0.00 3.46
267 268 0.836400 TTGGGAAGGAAGGAGCTCGT 60.836 55.000 7.83 5.12 0.00 4.18
303 304 2.422945 GGGTTTATCTTAGGGTGGCAGG 60.423 54.545 0.00 0.00 0.00 4.85
306 307 2.787339 TATCTTAGGGTGGCAGGCTA 57.213 50.000 0.00 0.00 0.00 3.93
307 308 2.124560 ATCTTAGGGTGGCAGGCTAT 57.875 50.000 0.00 0.00 0.00 2.97
312 313 3.161450 GGTGGCAGGCTATCCCGA 61.161 66.667 0.00 0.00 39.21 5.14
316 317 1.134670 GTGGCAGGCTATCCCGATATC 60.135 57.143 0.00 0.00 39.21 1.63
325 326 6.432783 CAGGCTATCCCGATATCTATCTTAGG 59.567 46.154 0.34 0.00 39.21 2.69
326 327 5.712917 GGCTATCCCGATATCTATCTTAGGG 59.287 48.000 0.34 2.34 34.23 3.53
327 328 5.184287 GCTATCCCGATATCTATCTTAGGGC 59.816 48.000 0.34 0.00 33.46 5.19
329 330 2.623889 CCCGATATCTATCTTAGGGCGG 59.376 54.545 0.34 0.00 36.25 6.13
333 334 4.882427 CGATATCTATCTTAGGGCGGAAGA 59.118 45.833 0.34 2.63 37.34 2.87
353 354 7.256190 CGGAAGACAACCCCATTATCTATCTTA 60.256 40.741 0.00 0.00 0.00 2.10
361 362 8.372877 ACCCCATTATCTATCTTAGAGATGTG 57.627 38.462 0.82 0.00 38.38 3.21
364 365 8.256605 CCCATTATCTATCTTAGAGATGTGTGG 58.743 40.741 0.82 0.00 38.38 4.17
365 366 8.256605 CCATTATCTATCTTAGAGATGTGTGGG 58.743 40.741 0.82 0.00 38.38 4.61
366 367 8.811017 CATTATCTATCTTAGAGATGTGTGGGT 58.189 37.037 0.82 0.00 38.38 4.51
369 370 2.187958 TCTTAGAGATGTGTGGGTGGG 58.812 52.381 0.00 0.00 0.00 4.61
370 371 1.909302 CTTAGAGATGTGTGGGTGGGT 59.091 52.381 0.00 0.00 0.00 4.51
372 373 1.675641 GAGATGTGTGGGTGGGTGC 60.676 63.158 0.00 0.00 0.00 5.01
376 377 4.887190 GTGTGGGTGGGTGCGGTT 62.887 66.667 0.00 0.00 0.00 4.44
395 415 2.349755 GGGGGTGCAAGTTCGCTA 59.650 61.111 0.00 0.00 0.00 4.26
402 422 3.555518 GGTGCAAGTTCGCTAGAAAAAG 58.444 45.455 0.00 0.00 38.23 2.27
408 428 3.067833 AGTTCGCTAGAAAAAGCTGGTC 58.932 45.455 0.00 0.00 40.49 4.02
409 429 2.806244 GTTCGCTAGAAAAAGCTGGTCA 59.194 45.455 0.00 0.00 40.49 4.02
412 432 2.744202 CGCTAGAAAAAGCTGGTCATGT 59.256 45.455 0.00 0.00 40.49 3.21
414 434 4.006319 GCTAGAAAAAGCTGGTCATGTCT 58.994 43.478 0.00 0.00 39.50 3.41
415 435 5.178797 GCTAGAAAAAGCTGGTCATGTCTA 58.821 41.667 0.00 0.00 39.50 2.59
428 448 4.287552 GTCATGTCTAGGGTTAGAGGGAA 58.712 47.826 0.00 0.00 36.61 3.97
430 450 2.748388 TGTCTAGGGTTAGAGGGAAGC 58.252 52.381 0.00 0.00 36.61 3.86
461 482 3.948719 ACCACGGTGGCGATGGTT 61.949 61.111 26.62 2.50 44.51 3.67
462 483 3.430862 CCACGGTGGCGATGGTTG 61.431 66.667 15.29 0.00 0.00 3.77
463 484 2.358125 CACGGTGGCGATGGTTGA 60.358 61.111 0.00 0.00 0.00 3.18
464 485 1.745115 CACGGTGGCGATGGTTGAT 60.745 57.895 0.00 0.00 0.00 2.57
465 486 1.745115 ACGGTGGCGATGGTTGATG 60.745 57.895 0.00 0.00 0.00 3.07
466 487 2.472059 CGGTGGCGATGGTTGATGG 61.472 63.158 0.00 0.00 0.00 3.51
467 488 2.120909 GGTGGCGATGGTTGATGGG 61.121 63.158 0.00 0.00 0.00 4.00
468 489 1.077787 GTGGCGATGGTTGATGGGA 60.078 57.895 0.00 0.00 0.00 4.37
469 490 1.097547 GTGGCGATGGTTGATGGGAG 61.098 60.000 0.00 0.00 0.00 4.30
470 491 1.526917 GGCGATGGTTGATGGGAGG 60.527 63.158 0.00 0.00 0.00 4.30
471 492 1.526917 GCGATGGTTGATGGGAGGG 60.527 63.158 0.00 0.00 0.00 4.30
472 493 1.526917 CGATGGTTGATGGGAGGGC 60.527 63.158 0.00 0.00 0.00 5.19
473 494 1.526917 GATGGTTGATGGGAGGGCG 60.527 63.158 0.00 0.00 0.00 6.13
474 495 2.965716 GATGGTTGATGGGAGGGCGG 62.966 65.000 0.00 0.00 0.00 6.13
475 496 4.506255 GGTTGATGGGAGGGCGGG 62.506 72.222 0.00 0.00 0.00 6.13
476 497 4.506255 GTTGATGGGAGGGCGGGG 62.506 72.222 0.00 0.00 0.00 5.73
524 575 4.760047 CGGCTGCGGTGGTAAGCT 62.760 66.667 0.00 0.00 37.12 3.74
535 586 0.618458 TGGTAAGCTGTTAGGCCTGG 59.382 55.000 17.99 3.91 0.00 4.45
536 587 0.107165 GGTAAGCTGTTAGGCCTGGG 60.107 60.000 17.99 3.52 0.00 4.45
542 593 2.262774 CTGTTAGGCCTGGGCTGGAG 62.263 65.000 30.92 19.02 39.30 3.86
581 635 8.923270 AGGAAGAAAAGAAACAATAATGGTTGA 58.077 29.630 0.00 0.00 36.33 3.18
605 659 9.231297 TGAAGGTAAAAGAAGATGTCTAATTGG 57.769 33.333 0.00 0.00 34.56 3.16
606 660 8.581253 AAGGTAAAAGAAGATGTCTAATTGGG 57.419 34.615 0.00 0.00 34.56 4.12
607 661 7.699878 AGGTAAAAGAAGATGTCTAATTGGGT 58.300 34.615 0.00 0.00 34.56 4.51
608 662 7.829706 AGGTAAAAGAAGATGTCTAATTGGGTC 59.170 37.037 0.00 0.00 34.56 4.46
609 663 7.829706 GGTAAAAGAAGATGTCTAATTGGGTCT 59.170 37.037 0.00 0.00 34.56 3.85
610 664 7.693969 AAAAGAAGATGTCTAATTGGGTCTG 57.306 36.000 0.00 0.00 34.56 3.51
611 665 4.775236 AGAAGATGTCTAATTGGGTCTGC 58.225 43.478 0.00 0.00 33.56 4.26
612 666 4.225942 AGAAGATGTCTAATTGGGTCTGCA 59.774 41.667 0.00 0.00 33.56 4.41
613 667 4.574674 AGATGTCTAATTGGGTCTGCAA 57.425 40.909 0.00 0.00 0.00 4.08
616 670 1.737793 GTCTAATTGGGTCTGCAACGG 59.262 52.381 0.00 0.00 0.00 4.44
623 677 2.401766 GGTCTGCAACGGATGGCTG 61.402 63.158 0.00 0.00 0.00 4.85
653 720 2.610374 CGACTGTCCCAAAAGAAAACGA 59.390 45.455 1.55 0.00 0.00 3.85
658 725 5.636121 ACTGTCCCAAAAGAAAACGAAAAAC 59.364 36.000 0.00 0.00 0.00 2.43
659 726 4.930405 TGTCCCAAAAGAAAACGAAAAACC 59.070 37.500 0.00 0.00 0.00 3.27
669 736 5.814188 AGAAAACGAAAAACCGTCTCTACTT 59.186 36.000 0.00 0.00 42.54 2.24
670 737 5.399604 AAACGAAAAACCGTCTCTACTTG 57.600 39.130 0.00 0.00 42.54 3.16
671 738 2.798847 ACGAAAAACCGTCTCTACTTGC 59.201 45.455 0.00 0.00 38.56 4.01
672 739 2.157085 CGAAAAACCGTCTCTACTTGCC 59.843 50.000 0.00 0.00 0.00 4.52
673 740 3.400255 GAAAAACCGTCTCTACTTGCCT 58.600 45.455 0.00 0.00 0.00 4.75
674 741 2.457366 AAACCGTCTCTACTTGCCTG 57.543 50.000 0.00 0.00 0.00 4.85
675 742 0.037232 AACCGTCTCTACTTGCCTGC 60.037 55.000 0.00 0.00 0.00 4.85
676 743 0.900647 ACCGTCTCTACTTGCCTGCT 60.901 55.000 0.00 0.00 0.00 4.24
677 744 0.459237 CCGTCTCTACTTGCCTGCTG 60.459 60.000 0.00 0.00 0.00 4.41
678 745 0.244994 CGTCTCTACTTGCCTGCTGT 59.755 55.000 0.00 0.00 0.00 4.40
679 746 1.719600 GTCTCTACTTGCCTGCTGTG 58.280 55.000 0.00 0.00 0.00 3.66
680 747 0.036952 TCTCTACTTGCCTGCTGTGC 60.037 55.000 0.00 0.00 0.00 4.57
681 748 0.321034 CTCTACTTGCCTGCTGTGCA 60.321 55.000 3.29 3.29 36.84 4.57
682 749 0.325933 TCTACTTGCCTGCTGTGCAT 59.674 50.000 7.39 0.00 38.13 3.96
683 750 0.450583 CTACTTGCCTGCTGTGCATG 59.549 55.000 13.86 13.86 38.13 4.06
684 751 0.961857 TACTTGCCTGCTGTGCATGG 60.962 55.000 17.23 11.76 38.13 3.66
701 768 4.146075 GCTGCTCTGCTCCTCGCT 62.146 66.667 0.00 0.00 40.11 4.93
708 775 1.875813 CTGCTCCTCGCTACGCAAG 60.876 63.158 0.00 0.00 41.55 4.01
719 786 0.442310 CTACGCAAGCGCTTAAAGCA 59.558 50.000 24.55 6.57 44.19 3.91
720 787 0.869068 TACGCAAGCGCTTAAAGCAA 59.131 45.000 24.55 10.33 44.19 3.91
768 835 2.912025 CACCGCCAAGCAAAGGGT 60.912 61.111 0.00 0.00 0.00 4.34
975 1042 1.280457 GATCCTCCCAGGTGACTTGT 58.720 55.000 0.00 0.00 40.21 3.16
981 1048 2.434702 CTCCCAGGTGACTTGTATACCC 59.565 54.545 0.00 0.00 40.21 3.69
1025 1092 1.434555 CCAAACAGGATAACGACGCA 58.565 50.000 0.00 0.00 41.22 5.24
1092 1159 2.125326 CGAGTATGTCCGGCCTCCA 61.125 63.158 0.00 0.00 0.00 3.86
1165 1232 2.282555 CAGGTATGCACGTCGATCAAAG 59.717 50.000 0.00 0.00 0.00 2.77
1207 1274 0.391130 CCGGCGGAGAACTTGATTGA 60.391 55.000 24.41 0.00 0.00 2.57
1228 1295 0.615331 ATCTGCGTGTCAGGTCCATT 59.385 50.000 0.00 0.00 43.06 3.16
1267 1334 4.512944 CGAACCATATGAGAGTTTCATGGG 59.487 45.833 3.65 9.77 46.01 4.00
1401 1468 0.602638 GCAAGATCCACCACGTCACA 60.603 55.000 0.00 0.00 0.00 3.58
1529 1599 1.796253 CGCAGGTACGCACGAAATCTA 60.796 52.381 0.00 0.00 0.00 1.98
1585 1655 1.787847 GTGCGATCTCACGGTTTGG 59.212 57.895 0.00 0.00 0.00 3.28
2207 2301 0.248825 CCTCTCCGACTTGATCTGCG 60.249 60.000 0.00 0.00 0.00 5.18
2217 2311 3.906649 GATCTGCGTGCGCGTGAG 61.907 66.667 22.18 16.87 45.51 3.51
2228 2322 1.799519 CGCGTGAGAGTGTGAGAGC 60.800 63.158 0.00 0.00 0.00 4.09
2233 2327 1.615883 GTGAGAGTGTGAGAGCCTGAA 59.384 52.381 0.00 0.00 0.00 3.02
2371 2465 1.857364 CAAACGACGCGTAGGCTTT 59.143 52.632 23.21 12.49 39.99 3.51
2373 2467 1.456544 CAAACGACGCGTAGGCTTTAA 59.543 47.619 23.21 0.00 39.99 1.52
2374 2468 2.000429 AACGACGCGTAGGCTTTAAT 58.000 45.000 23.21 0.00 39.99 1.40
2375 2469 1.553308 ACGACGCGTAGGCTTTAATC 58.447 50.000 23.21 0.59 38.73 1.75
2401 2546 8.826710 CAACTAAATTGATTCGTTCCATAGCTA 58.173 33.333 0.00 0.00 41.23 3.32
2413 2558 5.817816 CGTTCCATAGCTAAATCCTTTCTGT 59.182 40.000 0.00 0.00 0.00 3.41
2588 2733 4.856607 CCTTCCGCGACGAGCTCC 62.857 72.222 8.23 0.00 45.59 4.70
2679 2824 4.589798 TGAGTTGTAGGCTTGGTACAGTAA 59.410 41.667 0.00 0.00 42.39 2.24
2694 2839 6.421501 TGGTACAGTAACATTGTCACGTTTAG 59.578 38.462 0.00 0.00 0.00 1.85
2880 3030 5.106555 CCTTCGATTTCACTAGCACAAATGT 60.107 40.000 0.00 0.00 0.00 2.71
2972 3122 4.533815 AGACATTGGCATCTCATTCATGT 58.466 39.130 0.00 0.00 0.00 3.21
2974 3124 5.067413 AGACATTGGCATCTCATTCATGTTC 59.933 40.000 0.00 0.00 0.00 3.18
3007 3158 3.508845 AGCAGTGGGTTGTACATCTTT 57.491 42.857 0.00 0.00 0.00 2.52
3033 3184 3.362986 CCTTGACGAAATCAGACAACACG 60.363 47.826 0.00 0.00 38.99 4.49
3066 3217 2.618241 ACACTGCGTTGAACAATGACAT 59.382 40.909 10.41 0.00 0.00 3.06
3137 3288 2.989824 CTCCACCGGTCCACGTCT 60.990 66.667 2.59 0.00 42.24 4.18
3166 3317 3.891977 TCAAAACGGAATCCCACATTGAA 59.108 39.130 0.00 0.00 0.00 2.69
3173 3324 1.463674 ATCCCACATTGAAACCGCTC 58.536 50.000 0.00 0.00 0.00 5.03
3201 3362 0.108585 TCTCACCCTTGCCAACAGAC 59.891 55.000 0.00 0.00 0.00 3.51
3272 3433 6.949352 ACCCATCTCACATCAAAATGATAC 57.051 37.500 0.00 0.00 34.28 2.24
3297 3458 7.775561 ACACAAGGATGTAAAGAAATATCCCTC 59.224 37.037 0.00 0.00 39.91 4.30
3408 3574 8.214721 TGTACACTGTATTTCATGTTCAACAA 57.785 30.769 0.00 0.00 0.00 2.83
3574 3746 1.078709 CAGCCACGGAGTACACATTG 58.921 55.000 0.00 0.00 41.61 2.82
3647 3825 9.236691 TTGAACTTCAAAATCGAAAGATGAAAG 57.763 29.630 1.47 0.00 40.65 2.62
3663 3841 8.970859 AAGATGAAAGATACTTGGAGTTATGG 57.029 34.615 0.00 0.00 0.00 2.74
3664 3842 7.512992 AGATGAAAGATACTTGGAGTTATGGG 58.487 38.462 0.00 0.00 0.00 4.00
3665 3843 6.001449 TGAAAGATACTTGGAGTTATGGGG 57.999 41.667 0.00 0.00 0.00 4.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.414454 AGCAATGCACCGTAGATAAAAAGAA 59.586 36.000 8.35 0.00 0.00 2.52
1 2 4.941263 AGCAATGCACCGTAGATAAAAAGA 59.059 37.500 8.35 0.00 0.00 2.52
2 3 5.235305 AGCAATGCACCGTAGATAAAAAG 57.765 39.130 8.35 0.00 0.00 2.27
3 4 5.878116 ACTAGCAATGCACCGTAGATAAAAA 59.122 36.000 8.35 0.00 0.00 1.94
4 5 5.424757 ACTAGCAATGCACCGTAGATAAAA 58.575 37.500 8.35 0.00 0.00 1.52
5 6 5.018539 ACTAGCAATGCACCGTAGATAAA 57.981 39.130 8.35 0.00 0.00 1.40
6 7 4.665833 ACTAGCAATGCACCGTAGATAA 57.334 40.909 8.35 0.00 0.00 1.75
7 8 5.336451 CCATACTAGCAATGCACCGTAGATA 60.336 44.000 8.35 0.00 0.00 1.98
8 9 4.560128 CATACTAGCAATGCACCGTAGAT 58.440 43.478 8.35 0.00 0.00 1.98
9 10 3.243737 CCATACTAGCAATGCACCGTAGA 60.244 47.826 8.35 0.00 0.00 2.59
10 11 3.059884 CCATACTAGCAATGCACCGTAG 58.940 50.000 8.35 2.70 0.00 3.51
11 12 2.696187 TCCATACTAGCAATGCACCGTA 59.304 45.455 8.35 5.90 0.00 4.02
12 13 1.484653 TCCATACTAGCAATGCACCGT 59.515 47.619 8.35 3.63 0.00 4.83
13 14 2.238942 TCCATACTAGCAATGCACCG 57.761 50.000 8.35 0.00 0.00 4.94
14 15 5.491070 TCATATCCATACTAGCAATGCACC 58.509 41.667 8.35 0.00 0.00 5.01
15 16 6.401394 TCTCATATCCATACTAGCAATGCAC 58.599 40.000 8.35 0.00 0.00 4.57
16 17 6.610075 TCTCATATCCATACTAGCAATGCA 57.390 37.500 8.35 0.00 0.00 3.96
17 18 7.148340 GGTTTCTCATATCCATACTAGCAATGC 60.148 40.741 0.00 0.00 0.00 3.56
18 19 7.063898 CGGTTTCTCATATCCATACTAGCAATG 59.936 40.741 0.00 0.00 0.00 2.82
19 20 7.099764 CGGTTTCTCATATCCATACTAGCAAT 58.900 38.462 0.00 0.00 0.00 3.56
20 21 6.455647 CGGTTTCTCATATCCATACTAGCAA 58.544 40.000 0.00 0.00 0.00 3.91
21 22 5.047306 CCGGTTTCTCATATCCATACTAGCA 60.047 44.000 0.00 0.00 0.00 3.49
22 23 5.185249 TCCGGTTTCTCATATCCATACTAGC 59.815 44.000 0.00 0.00 0.00 3.42
23 24 6.835819 TCCGGTTTCTCATATCCATACTAG 57.164 41.667 0.00 0.00 0.00 2.57
24 25 8.914011 CATATCCGGTTTCTCATATCCATACTA 58.086 37.037 0.00 0.00 0.00 1.82
25 26 7.619698 TCATATCCGGTTTCTCATATCCATACT 59.380 37.037 0.00 0.00 0.00 2.12
26 27 7.782049 TCATATCCGGTTTCTCATATCCATAC 58.218 38.462 0.00 0.00 0.00 2.39
27 28 7.839200 TCTCATATCCGGTTTCTCATATCCATA 59.161 37.037 0.00 0.00 0.00 2.74
28 29 6.669591 TCTCATATCCGGTTTCTCATATCCAT 59.330 38.462 0.00 0.00 0.00 3.41
29 30 6.016555 TCTCATATCCGGTTTCTCATATCCA 58.983 40.000 0.00 0.00 0.00 3.41
30 31 6.531503 TCTCATATCCGGTTTCTCATATCC 57.468 41.667 0.00 0.00 0.00 2.59
33 34 8.837389 CGTATATCTCATATCCGGTTTCTCATA 58.163 37.037 0.00 0.00 0.00 2.15
34 35 7.201830 CCGTATATCTCATATCCGGTTTCTCAT 60.202 40.741 0.00 0.00 39.16 2.90
35 36 6.095021 CCGTATATCTCATATCCGGTTTCTCA 59.905 42.308 0.00 0.00 39.16 3.27
36 37 6.496571 CCGTATATCTCATATCCGGTTTCTC 58.503 44.000 0.00 0.00 39.16 2.87
37 38 6.452494 CCGTATATCTCATATCCGGTTTCT 57.548 41.667 0.00 0.00 39.16 2.52
42 43 5.340803 CACAACCGTATATCTCATATCCGG 58.659 45.833 0.00 0.00 46.40 5.14
43 44 5.124936 TCCACAACCGTATATCTCATATCCG 59.875 44.000 0.00 0.00 0.00 4.18
44 45 6.331061 GTCCACAACCGTATATCTCATATCC 58.669 44.000 0.00 0.00 0.00 2.59
45 46 6.028368 CGTCCACAACCGTATATCTCATATC 58.972 44.000 0.00 0.00 0.00 1.63
46 47 5.708697 TCGTCCACAACCGTATATCTCATAT 59.291 40.000 0.00 0.00 0.00 1.78
47 48 5.049198 GTCGTCCACAACCGTATATCTCATA 60.049 44.000 0.00 0.00 0.00 2.15
48 49 3.887110 TCGTCCACAACCGTATATCTCAT 59.113 43.478 0.00 0.00 0.00 2.90
49 50 3.065786 GTCGTCCACAACCGTATATCTCA 59.934 47.826 0.00 0.00 0.00 3.27
50 51 3.065786 TGTCGTCCACAACCGTATATCTC 59.934 47.826 0.00 0.00 29.30 2.75
51 52 3.018856 TGTCGTCCACAACCGTATATCT 58.981 45.455 0.00 0.00 29.30 1.98
52 53 3.369385 CTGTCGTCCACAACCGTATATC 58.631 50.000 0.00 0.00 33.31 1.63
53 54 2.100252 CCTGTCGTCCACAACCGTATAT 59.900 50.000 0.00 0.00 33.31 0.86
54 55 1.473677 CCTGTCGTCCACAACCGTATA 59.526 52.381 0.00 0.00 33.31 1.47
55 56 0.245539 CCTGTCGTCCACAACCGTAT 59.754 55.000 0.00 0.00 33.31 3.06
56 57 0.822944 TCCTGTCGTCCACAACCGTA 60.823 55.000 0.00 0.00 33.31 4.02
57 58 1.469335 ATCCTGTCGTCCACAACCGT 61.469 55.000 0.00 0.00 33.31 4.83
58 59 0.320421 AATCCTGTCGTCCACAACCG 60.320 55.000 0.00 0.00 33.31 4.44
59 60 1.892209 AAATCCTGTCGTCCACAACC 58.108 50.000 0.00 0.00 33.31 3.77
60 61 3.435671 CCTTAAATCCTGTCGTCCACAAC 59.564 47.826 0.00 0.00 33.31 3.32
61 62 3.558321 CCCTTAAATCCTGTCGTCCACAA 60.558 47.826 0.00 0.00 33.31 3.33
62 63 2.027561 CCCTTAAATCCTGTCGTCCACA 60.028 50.000 0.00 0.00 0.00 4.17
63 64 2.027469 ACCCTTAAATCCTGTCGTCCAC 60.027 50.000 0.00 0.00 0.00 4.02
64 65 2.262637 ACCCTTAAATCCTGTCGTCCA 58.737 47.619 0.00 0.00 0.00 4.02
65 66 3.007635 CAACCCTTAAATCCTGTCGTCC 58.992 50.000 0.00 0.00 0.00 4.79
66 67 2.418976 GCAACCCTTAAATCCTGTCGTC 59.581 50.000 0.00 0.00 0.00 4.20
67 68 2.433436 GCAACCCTTAAATCCTGTCGT 58.567 47.619 0.00 0.00 0.00 4.34
68 69 1.743394 GGCAACCCTTAAATCCTGTCG 59.257 52.381 0.00 0.00 0.00 4.35
69 70 3.087370 AGGCAACCCTTAAATCCTGTC 57.913 47.619 0.00 0.00 38.74 3.51
70 71 3.591977 ACTAGGCAACCCTTAAATCCTGT 59.408 43.478 0.00 0.00 42.87 4.00
71 72 4.200092 GACTAGGCAACCCTTAAATCCTG 58.800 47.826 0.00 0.00 42.87 3.86
72 73 3.850173 TGACTAGGCAACCCTTAAATCCT 59.150 43.478 0.00 0.00 42.87 3.24
73 74 4.200092 CTGACTAGGCAACCCTTAAATCC 58.800 47.826 0.00 0.00 42.87 3.01
74 75 4.636206 CACTGACTAGGCAACCCTTAAATC 59.364 45.833 0.00 0.00 42.87 2.17
75 76 4.589908 CACTGACTAGGCAACCCTTAAAT 58.410 43.478 0.00 0.00 42.87 1.40
76 77 3.809324 GCACTGACTAGGCAACCCTTAAA 60.809 47.826 0.00 0.00 42.87 1.52
77 78 2.290071 GCACTGACTAGGCAACCCTTAA 60.290 50.000 0.00 0.00 42.87 1.85
78 79 1.278127 GCACTGACTAGGCAACCCTTA 59.722 52.381 0.00 0.00 42.87 2.69
79 80 0.036875 GCACTGACTAGGCAACCCTT 59.963 55.000 0.00 0.00 42.87 3.95
80 81 1.679898 GCACTGACTAGGCAACCCT 59.320 57.895 0.00 0.00 45.61 4.34
81 82 1.377333 GGCACTGACTAGGCAACCC 60.377 63.158 0.00 0.00 37.17 4.11
82 83 1.377333 GGGCACTGACTAGGCAACC 60.377 63.158 0.00 1.07 37.17 3.77
83 84 0.955919 GTGGGCACTGACTAGGCAAC 60.956 60.000 0.00 0.00 0.00 4.17
84 85 1.374947 GTGGGCACTGACTAGGCAA 59.625 57.895 0.00 0.00 0.00 4.52
85 86 2.942796 CGTGGGCACTGACTAGGCA 61.943 63.158 0.00 0.00 0.00 4.75
86 87 2.125512 CGTGGGCACTGACTAGGC 60.126 66.667 0.00 0.00 0.00 3.93
87 88 1.982395 TCCGTGGGCACTGACTAGG 60.982 63.158 0.00 0.00 0.00 3.02
88 89 1.215647 GTCCGTGGGCACTGACTAG 59.784 63.158 0.00 0.00 40.77 2.57
89 90 2.632544 CGTCCGTGGGCACTGACTA 61.633 63.158 0.00 0.00 41.46 2.59
90 91 3.991051 CGTCCGTGGGCACTGACT 61.991 66.667 0.00 0.00 41.46 3.41
117 118 3.340721 CTCAAACGCTCGCAGACGC 62.341 63.158 0.00 0.00 39.84 5.19
118 119 2.016704 ACTCAAACGCTCGCAGACG 61.017 57.895 0.00 0.00 42.01 4.18
119 120 1.488957 CACTCAAACGCTCGCAGAC 59.511 57.895 0.00 0.00 0.00 3.51
120 121 1.664649 CCACTCAAACGCTCGCAGA 60.665 57.895 0.00 0.00 0.00 4.26
121 122 2.856032 CCACTCAAACGCTCGCAG 59.144 61.111 0.00 0.00 0.00 5.18
122 123 3.345808 GCCACTCAAACGCTCGCA 61.346 61.111 0.00 0.00 0.00 5.10
123 124 4.090057 GGCCACTCAAACGCTCGC 62.090 66.667 0.00 0.00 0.00 5.03
124 125 3.777925 CGGCCACTCAAACGCTCG 61.778 66.667 2.24 0.00 0.00 5.03
125 126 3.423154 CCGGCCACTCAAACGCTC 61.423 66.667 2.24 0.00 0.00 5.03
126 127 2.748058 AATCCGGCCACTCAAACGCT 62.748 55.000 2.24 0.00 0.00 5.07
127 128 1.862602 AAATCCGGCCACTCAAACGC 61.863 55.000 2.24 0.00 0.00 4.84
128 129 0.109781 CAAATCCGGCCACTCAAACG 60.110 55.000 2.24 0.00 0.00 3.60
129 130 0.958822 ACAAATCCGGCCACTCAAAC 59.041 50.000 2.24 0.00 0.00 2.93
130 131 2.570415 TACAAATCCGGCCACTCAAA 57.430 45.000 2.24 0.00 0.00 2.69
131 132 2.570415 TTACAAATCCGGCCACTCAA 57.430 45.000 2.24 0.00 0.00 3.02
132 133 2.224670 ACTTTACAAATCCGGCCACTCA 60.225 45.455 2.24 0.00 0.00 3.41
133 134 2.418976 GACTTTACAAATCCGGCCACTC 59.581 50.000 2.24 0.00 0.00 3.51
134 135 2.433436 GACTTTACAAATCCGGCCACT 58.567 47.619 2.24 0.00 0.00 4.00
135 136 1.471287 GGACTTTACAAATCCGGCCAC 59.529 52.381 2.24 0.00 0.00 5.01
136 137 1.828979 GGACTTTACAAATCCGGCCA 58.171 50.000 2.24 0.00 0.00 5.36
141 142 2.554893 TGCAACCGGACTTTACAAATCC 59.445 45.455 9.46 0.00 0.00 3.01
142 143 3.500680 TCTGCAACCGGACTTTACAAATC 59.499 43.478 9.46 0.00 0.00 2.17
143 144 3.482436 TCTGCAACCGGACTTTACAAAT 58.518 40.909 9.46 0.00 0.00 2.32
144 145 2.920524 TCTGCAACCGGACTTTACAAA 58.079 42.857 9.46 0.00 0.00 2.83
145 146 2.623878 TCTGCAACCGGACTTTACAA 57.376 45.000 9.46 0.00 0.00 2.41
146 147 2.422597 CATCTGCAACCGGACTTTACA 58.577 47.619 9.46 0.00 0.00 2.41
147 148 1.130561 GCATCTGCAACCGGACTTTAC 59.869 52.381 9.46 0.00 41.59 2.01
148 149 1.003118 AGCATCTGCAACCGGACTTTA 59.997 47.619 9.46 0.00 45.16 1.85
149 150 0.250901 AGCATCTGCAACCGGACTTT 60.251 50.000 9.46 0.00 45.16 2.66
150 151 0.674895 GAGCATCTGCAACCGGACTT 60.675 55.000 9.46 0.00 45.16 3.01
151 152 1.078848 GAGCATCTGCAACCGGACT 60.079 57.895 9.46 0.00 45.16 3.85
152 153 3.490890 GAGCATCTGCAACCGGAC 58.509 61.111 9.46 0.00 45.16 4.79
163 164 7.717568 TCTACATTCAGGTTACTTAGAGCATC 58.282 38.462 0.00 0.00 0.00 3.91
164 165 7.661536 TCTACATTCAGGTTACTTAGAGCAT 57.338 36.000 0.00 0.00 0.00 3.79
165 166 7.476540 TTCTACATTCAGGTTACTTAGAGCA 57.523 36.000 0.00 0.00 0.00 4.26
166 167 8.950208 AATTCTACATTCAGGTTACTTAGAGC 57.050 34.615 0.00 0.00 0.00 4.09
168 169 9.667107 CCAAATTCTACATTCAGGTTACTTAGA 57.333 33.333 0.00 0.00 0.00 2.10
169 170 8.893727 CCCAAATTCTACATTCAGGTTACTTAG 58.106 37.037 0.00 0.00 0.00 2.18
170 171 7.338449 GCCCAAATTCTACATTCAGGTTACTTA 59.662 37.037 0.00 0.00 0.00 2.24
171 172 6.152831 GCCCAAATTCTACATTCAGGTTACTT 59.847 38.462 0.00 0.00 0.00 2.24
172 173 5.652452 GCCCAAATTCTACATTCAGGTTACT 59.348 40.000 0.00 0.00 0.00 2.24
173 174 5.163550 GGCCCAAATTCTACATTCAGGTTAC 60.164 44.000 0.00 0.00 0.00 2.50
174 175 4.953579 GGCCCAAATTCTACATTCAGGTTA 59.046 41.667 0.00 0.00 0.00 2.85
175 176 3.769300 GGCCCAAATTCTACATTCAGGTT 59.231 43.478 0.00 0.00 0.00 3.50
176 177 3.365472 GGCCCAAATTCTACATTCAGGT 58.635 45.455 0.00 0.00 0.00 4.00
177 178 2.358898 CGGCCCAAATTCTACATTCAGG 59.641 50.000 0.00 0.00 0.00 3.86
178 179 3.278574 TCGGCCCAAATTCTACATTCAG 58.721 45.455 0.00 0.00 0.00 3.02
179 180 3.358111 TCGGCCCAAATTCTACATTCA 57.642 42.857 0.00 0.00 0.00 2.57
180 181 4.918810 AATCGGCCCAAATTCTACATTC 57.081 40.909 0.00 0.00 0.00 2.67
181 182 5.418676 CAAAATCGGCCCAAATTCTACATT 58.581 37.500 0.00 0.00 0.00 2.71
182 183 4.141959 CCAAAATCGGCCCAAATTCTACAT 60.142 41.667 0.00 0.00 0.00 2.29
183 184 3.194542 CCAAAATCGGCCCAAATTCTACA 59.805 43.478 0.00 0.00 0.00 2.74
184 185 3.194755 ACCAAAATCGGCCCAAATTCTAC 59.805 43.478 0.00 0.00 0.00 2.59
185 186 3.194542 CACCAAAATCGGCCCAAATTCTA 59.805 43.478 0.00 0.00 0.00 2.10
186 187 2.028203 CACCAAAATCGGCCCAAATTCT 60.028 45.455 0.00 0.00 0.00 2.40
187 188 2.289382 ACACCAAAATCGGCCCAAATTC 60.289 45.455 0.00 0.00 0.00 2.17
188 189 1.696884 ACACCAAAATCGGCCCAAATT 59.303 42.857 0.00 0.00 0.00 1.82
189 190 1.001860 CACACCAAAATCGGCCCAAAT 59.998 47.619 0.00 0.00 0.00 2.32
190 191 0.390860 CACACCAAAATCGGCCCAAA 59.609 50.000 0.00 0.00 0.00 3.28
191 192 0.468214 TCACACCAAAATCGGCCCAA 60.468 50.000 0.00 0.00 0.00 4.12
192 193 0.468214 TTCACACCAAAATCGGCCCA 60.468 50.000 0.00 0.00 0.00 5.36
193 194 0.243636 CTTCACACCAAAATCGGCCC 59.756 55.000 0.00 0.00 0.00 5.80
194 195 0.243636 CCTTCACACCAAAATCGGCC 59.756 55.000 0.00 0.00 0.00 6.13
195 196 1.243902 TCCTTCACACCAAAATCGGC 58.756 50.000 0.00 0.00 0.00 5.54
196 197 2.228822 CCTTCCTTCACACCAAAATCGG 59.771 50.000 0.00 0.00 0.00 4.18
197 198 3.146066 TCCTTCCTTCACACCAAAATCG 58.854 45.455 0.00 0.00 0.00 3.34
198 199 4.340950 TGTTCCTTCCTTCACACCAAAATC 59.659 41.667 0.00 0.00 0.00 2.17
199 200 4.285863 TGTTCCTTCCTTCACACCAAAAT 58.714 39.130 0.00 0.00 0.00 1.82
200 201 3.702792 TGTTCCTTCCTTCACACCAAAA 58.297 40.909 0.00 0.00 0.00 2.44
201 202 3.374042 TGTTCCTTCCTTCACACCAAA 57.626 42.857 0.00 0.00 0.00 3.28
202 203 3.020984 GTTGTTCCTTCCTTCACACCAA 58.979 45.455 0.00 0.00 0.00 3.67
203 204 2.650322 GTTGTTCCTTCCTTCACACCA 58.350 47.619 0.00 0.00 0.00 4.17
204 205 1.954382 GGTTGTTCCTTCCTTCACACC 59.046 52.381 0.00 0.00 0.00 4.16
205 206 1.602377 CGGTTGTTCCTTCCTTCACAC 59.398 52.381 0.00 0.00 0.00 3.82
206 207 1.476110 CCGGTTGTTCCTTCCTTCACA 60.476 52.381 0.00 0.00 0.00 3.58
207 208 1.202722 TCCGGTTGTTCCTTCCTTCAC 60.203 52.381 0.00 0.00 0.00 3.18
208 209 1.071699 CTCCGGTTGTTCCTTCCTTCA 59.928 52.381 0.00 0.00 0.00 3.02
209 210 1.610886 CCTCCGGTTGTTCCTTCCTTC 60.611 57.143 0.00 0.00 0.00 3.46
210 211 0.400594 CCTCCGGTTGTTCCTTCCTT 59.599 55.000 0.00 0.00 0.00 3.36
211 212 0.473117 TCCTCCGGTTGTTCCTTCCT 60.473 55.000 0.00 0.00 0.00 3.36
212 213 0.399075 TTCCTCCGGTTGTTCCTTCC 59.601 55.000 0.00 0.00 0.00 3.46
213 214 2.152016 CTTTCCTCCGGTTGTTCCTTC 58.848 52.381 0.00 0.00 0.00 3.46
214 215 1.202891 CCTTTCCTCCGGTTGTTCCTT 60.203 52.381 0.00 0.00 0.00 3.36
215 216 0.400594 CCTTTCCTCCGGTTGTTCCT 59.599 55.000 0.00 0.00 0.00 3.36
216 217 0.399075 TCCTTTCCTCCGGTTGTTCC 59.601 55.000 0.00 0.00 0.00 3.62
217 218 2.265589 TTCCTTTCCTCCGGTTGTTC 57.734 50.000 0.00 0.00 0.00 3.18
218 219 2.173996 TCTTTCCTTTCCTCCGGTTGTT 59.826 45.455 0.00 0.00 0.00 2.83
219 220 1.772453 TCTTTCCTTTCCTCCGGTTGT 59.228 47.619 0.00 0.00 0.00 3.32
220 221 2.427506 CTCTTTCCTTTCCTCCGGTTG 58.572 52.381 0.00 0.00 0.00 3.77
221 222 1.271434 GCTCTTTCCTTTCCTCCGGTT 60.271 52.381 0.00 0.00 0.00 4.44
222 223 0.325272 GCTCTTTCCTTTCCTCCGGT 59.675 55.000 0.00 0.00 0.00 5.28
223 224 0.615850 AGCTCTTTCCTTTCCTCCGG 59.384 55.000 0.00 0.00 0.00 5.14
224 225 1.276421 TGAGCTCTTTCCTTTCCTCCG 59.724 52.381 16.19 0.00 0.00 4.63
225 226 3.078097 GTTGAGCTCTTTCCTTTCCTCC 58.922 50.000 16.19 0.00 0.00 4.30
226 227 2.739379 CGTTGAGCTCTTTCCTTTCCTC 59.261 50.000 16.19 0.00 0.00 3.71
227 228 2.104963 ACGTTGAGCTCTTTCCTTTCCT 59.895 45.455 16.19 0.00 0.00 3.36
228 229 2.495084 ACGTTGAGCTCTTTCCTTTCC 58.505 47.619 16.19 0.00 0.00 3.13
229 230 3.304057 CCAACGTTGAGCTCTTTCCTTTC 60.304 47.826 29.35 0.00 0.00 2.62
230 231 2.618709 CCAACGTTGAGCTCTTTCCTTT 59.381 45.455 29.35 0.00 0.00 3.11
231 232 2.222027 CCAACGTTGAGCTCTTTCCTT 58.778 47.619 29.35 0.00 0.00 3.36
232 233 1.543429 CCCAACGTTGAGCTCTTTCCT 60.543 52.381 29.35 0.00 0.00 3.36
233 234 0.875059 CCCAACGTTGAGCTCTTTCC 59.125 55.000 29.35 0.00 0.00 3.13
234 235 1.878953 TCCCAACGTTGAGCTCTTTC 58.121 50.000 29.35 4.41 0.00 2.62
235 236 2.222027 CTTCCCAACGTTGAGCTCTTT 58.778 47.619 29.35 0.00 0.00 2.52
236 237 1.543429 CCTTCCCAACGTTGAGCTCTT 60.543 52.381 29.35 0.00 0.00 2.85
237 238 0.035458 CCTTCCCAACGTTGAGCTCT 59.965 55.000 29.35 0.00 0.00 4.09
238 239 0.034896 TCCTTCCCAACGTTGAGCTC 59.965 55.000 29.35 6.82 0.00 4.09
239 240 0.472471 TTCCTTCCCAACGTTGAGCT 59.528 50.000 29.35 0.00 0.00 4.09
240 241 0.875059 CTTCCTTCCCAACGTTGAGC 59.125 55.000 29.35 0.00 0.00 4.26
241 242 1.071699 TCCTTCCTTCCCAACGTTGAG 59.928 52.381 29.35 17.26 0.00 3.02
242 243 1.071699 CTCCTTCCTTCCCAACGTTGA 59.928 52.381 29.35 7.80 0.00 3.18
243 244 1.523758 CTCCTTCCTTCCCAACGTTG 58.476 55.000 21.47 21.47 0.00 4.10
244 245 0.250770 GCTCCTTCCTTCCCAACGTT 60.251 55.000 0.00 0.00 0.00 3.99
245 246 1.128188 AGCTCCTTCCTTCCCAACGT 61.128 55.000 0.00 0.00 0.00 3.99
246 247 0.391793 GAGCTCCTTCCTTCCCAACG 60.392 60.000 0.87 0.00 0.00 4.10
247 248 0.391793 CGAGCTCCTTCCTTCCCAAC 60.392 60.000 8.47 0.00 0.00 3.77
248 249 0.836400 ACGAGCTCCTTCCTTCCCAA 60.836 55.000 8.47 0.00 0.00 4.12
249 250 1.229209 ACGAGCTCCTTCCTTCCCA 60.229 57.895 8.47 0.00 0.00 4.37
250 251 1.518302 GACGAGCTCCTTCCTTCCC 59.482 63.158 8.47 0.00 0.00 3.97
251 252 1.139947 CGACGAGCTCCTTCCTTCC 59.860 63.158 8.47 0.00 0.00 3.46
252 253 1.139947 CCGACGAGCTCCTTCCTTC 59.860 63.158 8.47 0.00 0.00 3.46
253 254 1.304217 TCCGACGAGCTCCTTCCTT 60.304 57.895 8.47 0.00 0.00 3.36
254 255 1.751162 CTCCGACGAGCTCCTTCCT 60.751 63.158 8.47 0.00 0.00 3.36
255 256 1.313812 TTCTCCGACGAGCTCCTTCC 61.314 60.000 8.47 0.00 35.94 3.46
256 257 0.099791 CTTCTCCGACGAGCTCCTTC 59.900 60.000 8.47 3.95 35.94 3.46
257 258 1.939769 GCTTCTCCGACGAGCTCCTT 61.940 60.000 8.47 0.00 35.94 3.36
258 259 2.411504 GCTTCTCCGACGAGCTCCT 61.412 63.158 8.47 0.00 35.94 3.69
259 260 2.103340 GCTTCTCCGACGAGCTCC 59.897 66.667 8.47 0.00 35.94 4.70
279 280 2.932261 CCACCCTAAGATAAACCCAGC 58.068 52.381 0.00 0.00 0.00 4.85
282 283 2.422945 CCTGCCACCCTAAGATAAACCC 60.423 54.545 0.00 0.00 0.00 4.11
283 284 2.932261 CCTGCCACCCTAAGATAAACC 58.068 52.381 0.00 0.00 0.00 3.27
303 304 5.184287 GCCCTAAGATAGATATCGGGATAGC 59.816 48.000 12.35 0.00 34.61 2.97
306 307 4.145807 CGCCCTAAGATAGATATCGGGAT 58.854 47.826 12.35 1.47 34.61 3.85
307 308 3.552875 CGCCCTAAGATAGATATCGGGA 58.447 50.000 12.35 0.00 34.61 5.14
312 313 5.580998 TGTCTTCCGCCCTAAGATAGATAT 58.419 41.667 0.00 0.00 35.53 1.63
316 317 3.492829 GGTTGTCTTCCGCCCTAAGATAG 60.493 52.174 0.00 0.00 35.53 2.08
325 326 0.034863 TAATGGGGTTGTCTTCCGCC 60.035 55.000 0.00 0.00 37.14 6.13
326 327 1.947456 GATAATGGGGTTGTCTTCCGC 59.053 52.381 0.00 0.00 38.21 5.54
327 328 3.560636 AGATAATGGGGTTGTCTTCCG 57.439 47.619 0.00 0.00 35.01 4.30
329 330 8.871125 TCTAAGATAGATAATGGGGTTGTCTTC 58.129 37.037 0.00 0.00 38.89 2.87
333 334 8.820831 CATCTCTAAGATAGATAATGGGGTTGT 58.179 37.037 0.00 0.00 32.12 3.32
353 354 2.069776 CACCCACCCACACATCTCT 58.930 57.895 0.00 0.00 0.00 3.10
378 379 1.745489 CTAGCGAACTTGCACCCCC 60.745 63.158 0.00 0.00 37.31 5.40
380 381 1.519408 TTTCTAGCGAACTTGCACCC 58.481 50.000 0.00 0.00 37.31 4.61
392 412 4.006319 AGACATGACCAGCTTTTTCTAGC 58.994 43.478 0.00 0.00 41.53 3.42
395 415 4.566488 CCCTAGACATGACCAGCTTTTTCT 60.566 45.833 0.00 0.00 0.00 2.52
402 422 3.031736 TCTAACCCTAGACATGACCAGC 58.968 50.000 0.00 0.00 0.00 4.85
408 428 3.070302 GCTTCCCTCTAACCCTAGACATG 59.930 52.174 0.00 0.00 30.68 3.21
409 429 3.310193 GCTTCCCTCTAACCCTAGACAT 58.690 50.000 0.00 0.00 30.68 3.06
412 432 1.649633 TGGCTTCCCTCTAACCCTAGA 59.350 52.381 0.00 0.00 33.00 2.43
414 434 2.478292 CTTGGCTTCCCTCTAACCCTA 58.522 52.381 0.00 0.00 0.00 3.53
415 435 1.290134 CTTGGCTTCCCTCTAACCCT 58.710 55.000 0.00 0.00 0.00 4.34
448 469 2.472059 CCATCAACCATCGCCACCG 61.472 63.158 0.00 0.00 0.00 4.94
449 470 2.120909 CCCATCAACCATCGCCACC 61.121 63.158 0.00 0.00 0.00 4.61
450 471 1.077787 TCCCATCAACCATCGCCAC 60.078 57.895 0.00 0.00 0.00 5.01
451 472 1.224315 CTCCCATCAACCATCGCCA 59.776 57.895 0.00 0.00 0.00 5.69
454 475 1.526917 GCCCTCCCATCAACCATCG 60.527 63.158 0.00 0.00 0.00 3.84
456 477 2.597340 CGCCCTCCCATCAACCAT 59.403 61.111 0.00 0.00 0.00 3.55
457 478 3.727258 CCGCCCTCCCATCAACCA 61.727 66.667 0.00 0.00 0.00 3.67
458 479 4.506255 CCCGCCCTCCCATCAACC 62.506 72.222 0.00 0.00 0.00 3.77
519 570 0.914417 AGCCCAGGCCTAACAGCTTA 60.914 55.000 3.98 0.00 43.17 3.09
524 575 2.204074 TCCAGCCCAGGCCTAACA 60.204 61.111 3.98 0.00 43.17 2.41
542 593 4.742201 TTCCTCTCGCACTGCCGC 62.742 66.667 0.00 0.00 0.00 6.53
546 597 3.032017 TCTTTTCTTCCTCTCGCACTG 57.968 47.619 0.00 0.00 0.00 3.66
547 598 3.753294 TTCTTTTCTTCCTCTCGCACT 57.247 42.857 0.00 0.00 0.00 4.40
549 600 3.804036 TGTTTCTTTTCTTCCTCTCGCA 58.196 40.909 0.00 0.00 0.00 5.10
551 602 7.965107 CCATTATTGTTTCTTTTCTTCCTCTCG 59.035 37.037 0.00 0.00 0.00 4.04
581 635 8.170730 ACCCAATTAGACATCTTCTTTTACCTT 58.829 33.333 0.00 0.00 35.55 3.50
595 649 2.422597 CGTTGCAGACCCAATTAGACA 58.577 47.619 0.00 0.00 0.00 3.41
603 657 2.350895 CCATCCGTTGCAGACCCA 59.649 61.111 0.00 0.00 0.00 4.51
604 658 3.134127 GCCATCCGTTGCAGACCC 61.134 66.667 0.00 0.00 0.00 4.46
605 659 2.045926 AGCCATCCGTTGCAGACC 60.046 61.111 0.00 0.00 0.00 3.85
606 660 0.955428 TTCAGCCATCCGTTGCAGAC 60.955 55.000 0.00 0.00 0.00 3.51
607 661 0.250684 TTTCAGCCATCCGTTGCAGA 60.251 50.000 0.00 0.00 0.00 4.26
608 662 0.597568 TTTTCAGCCATCCGTTGCAG 59.402 50.000 0.00 0.00 0.00 4.41
609 663 0.313672 GTTTTCAGCCATCCGTTGCA 59.686 50.000 0.00 0.00 0.00 4.08
610 664 0.729140 CGTTTTCAGCCATCCGTTGC 60.729 55.000 0.00 0.00 0.00 4.17
611 665 0.871722 TCGTTTTCAGCCATCCGTTG 59.128 50.000 0.00 0.00 0.00 4.10
612 666 1.737793 GATCGTTTTCAGCCATCCGTT 59.262 47.619 0.00 0.00 0.00 4.44
613 667 1.369625 GATCGTTTTCAGCCATCCGT 58.630 50.000 0.00 0.00 0.00 4.69
616 670 2.029728 CAGTCGATCGTTTTCAGCCATC 59.970 50.000 15.94 0.00 0.00 3.51
623 677 2.074547 TGGGACAGTCGATCGTTTTC 57.925 50.000 15.94 7.40 0.00 2.29
653 720 3.139077 CAGGCAAGTAGAGACGGTTTTT 58.861 45.455 0.00 0.00 0.00 1.94
658 725 0.459237 CAGCAGGCAAGTAGAGACGG 60.459 60.000 0.00 0.00 0.00 4.79
659 726 0.244994 ACAGCAGGCAAGTAGAGACG 59.755 55.000 0.00 0.00 0.00 4.18
669 736 4.671590 AGCCATGCACAGCAGGCA 62.672 61.111 24.01 7.60 46.91 4.75
670 737 4.129737 CAGCCATGCACAGCAGGC 62.130 66.667 18.40 18.40 45.82 4.85
680 747 1.524165 GAGGAGCAGAGCAGCCATG 60.524 63.158 0.00 0.00 34.23 3.66
681 748 2.909577 GAGGAGCAGAGCAGCCAT 59.090 61.111 0.00 0.00 34.23 4.40
682 749 3.767806 CGAGGAGCAGAGCAGCCA 61.768 66.667 0.00 0.00 34.23 4.75
701 768 0.869068 TTGCTTTAAGCGCTTGCGTA 59.131 45.000 32.23 16.06 46.26 4.42
719 786 1.534235 ACTCACCCACCTCTCGCTT 60.534 57.895 0.00 0.00 0.00 4.68
720 787 1.979693 GACTCACCCACCTCTCGCT 60.980 63.158 0.00 0.00 0.00 4.93
895 962 0.583438 CTCTGGCATTATCAACGGCG 59.417 55.000 4.80 4.80 0.00 6.46
903 970 1.774856 GTGGGGGTACTCTGGCATTAT 59.225 52.381 0.00 0.00 0.00 1.28
904 971 1.209621 GTGGGGGTACTCTGGCATTA 58.790 55.000 0.00 0.00 0.00 1.90
975 1042 1.717791 CGACGTGCACGAGGGGTATA 61.718 60.000 42.94 0.00 43.02 1.47
1025 1092 3.350833 ACGACCAGGAGTACTACGAAAT 58.649 45.455 0.00 0.00 0.00 2.17
1165 1232 2.514013 CCGGCGTCGATAAGTGCAC 61.514 63.158 12.93 9.40 39.00 4.57
1191 1258 3.063180 CAGATGTCAATCAAGTTCTCCGC 59.937 47.826 0.00 0.00 35.03 5.54
1199 1266 3.380486 GACACGCAGATGTCAATCAAG 57.620 47.619 7.65 0.00 46.89 3.02
1228 1295 1.886253 TTCGCCCCGACAACCGATAA 61.886 55.000 0.00 0.00 41.76 1.75
1267 1334 3.712881 GTGCTTGGCGTCCGTGAC 61.713 66.667 0.00 0.00 0.00 3.67
1322 1389 4.367023 TGGCCGACGTGGTGTAGC 62.367 66.667 0.00 0.00 41.21 3.58
1401 1468 1.062886 TCAGGATCCAGAGGTCCGATT 60.063 52.381 15.82 0.00 39.54 3.34
1447 1514 2.804090 GAACTCGTCGCCGACCAC 60.804 66.667 12.26 0.00 38.40 4.16
1519 1586 2.223829 ACCAGAGGCGATAGATTTCGTG 60.224 50.000 0.00 0.00 41.16 4.35
1585 1655 1.988982 GCCCAAGGTCCCCTGAGATC 61.989 65.000 0.00 0.00 32.13 2.75
2207 2301 2.354656 TCACACTCTCACGCGCAC 60.355 61.111 5.73 0.00 0.00 5.34
2217 2311 1.067213 GTCCTTCAGGCTCTCACACTC 60.067 57.143 0.00 0.00 34.44 3.51
2228 2322 4.389374 ACAGTTAACATGTGTCCTTCAGG 58.611 43.478 8.61 0.00 0.00 3.86
2233 2327 3.550820 TGCAACAGTTAACATGTGTCCT 58.449 40.909 8.61 0.00 0.00 3.85
2295 2389 1.061411 CGCCGATTGTGATGTGCAG 59.939 57.895 0.00 0.00 0.00 4.41
2375 2469 7.697691 AGCTATGGAACGAATCAATTTAGTTG 58.302 34.615 0.00 0.00 39.25 3.16
2401 2546 4.956075 ACACAAACAGGACAGAAAGGATTT 59.044 37.500 0.00 0.00 43.98 2.17
2413 2558 1.525077 GGCGACCACACAAACAGGA 60.525 57.895 0.00 0.00 0.00 3.86
2679 2824 2.551504 GGACCCCTAAACGTGACAATGT 60.552 50.000 0.00 0.00 0.00 2.71
2694 2839 0.984995 AGCACAGAAGTTAGGACCCC 59.015 55.000 0.00 0.00 0.00 4.95
2820 2970 6.976636 TTTGCTAAAAGAAAAACAAGTGGG 57.023 33.333 0.00 0.00 0.00 4.61
2855 3005 3.953712 TGTGCTAGTGAAATCGAAGGA 57.046 42.857 0.00 0.00 0.00 3.36
2919 3069 4.126437 CGGGATGTATGCTTGTCATGTTA 58.874 43.478 0.00 0.00 36.63 2.41
2972 3122 5.132502 CCCACTGCTTATGTGATTATGGAA 58.867 41.667 0.00 0.00 37.60 3.53
2974 3124 4.464008 ACCCACTGCTTATGTGATTATGG 58.536 43.478 0.00 0.00 37.60 2.74
3007 3158 5.221362 TGTTGTCTGATTTCGTCAAGGAGTA 60.221 40.000 0.00 0.00 36.14 2.59
3054 3205 4.933505 TTTTGAGCCATGTCATTGTTCA 57.066 36.364 0.02 0.02 0.00 3.18
3137 3288 5.163405 TGTGGGATTCCGTTTTGAAATTGAA 60.163 36.000 0.00 0.00 35.24 2.69
3166 3317 0.179062 GAGATGCAGGATGAGCGGTT 60.179 55.000 0.00 0.00 39.69 4.44
3173 3324 1.676746 CAAGGGTGAGATGCAGGATG 58.323 55.000 0.00 0.00 40.87 3.51
3236 3397 6.539173 TGTGAGATGGGTTGTAAATACAGTT 58.461 36.000 0.00 0.00 37.52 3.16
3272 3433 7.041780 CGAGGGATATTTCTTTACATCCTTGTG 60.042 40.741 0.00 0.00 37.65 3.33
3290 3451 8.918202 ATCTAAACAATATTTTGCGAGGGATA 57.082 30.769 0.00 0.00 36.22 2.59
3408 3574 5.762179 TGATGGAGTTGTCTAAGTTGGAT 57.238 39.130 0.00 0.00 0.00 3.41
3545 3717 3.009723 ACTCCGTGGCTGAATGTTTATG 58.990 45.455 0.00 0.00 0.00 1.90
3574 3746 8.087750 TGATTGACAATTGATTTTGGGAACTAC 58.912 33.333 13.59 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.