Multiple sequence alignment - TraesCS2B01G309800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G309800 chr2B 100.000 4787 0 0 1 4787 442791003 442795789 0.000000e+00 8841.0
1 TraesCS2B01G309800 chr2B 87.288 236 16 5 4242 4476 735827242 735827464 1.710000e-64 257.0
2 TraesCS2B01G309800 chr2D 94.052 3581 86 39 629 4165 373221570 373225067 0.000000e+00 5315.0
3 TraesCS2B01G309800 chr2D 97.314 484 13 0 4304 4787 373225178 373225661 0.000000e+00 822.0
4 TraesCS2B01G309800 chr2D 85.304 626 31 20 1 575 373220953 373221568 1.480000e-164 590.0
5 TraesCS2B01G309800 chr2A 95.405 2459 55 16 1734 4165 504278315 504275888 0.000000e+00 3862.0
6 TraesCS2B01G309800 chr2A 91.819 1039 29 13 717 1736 504279398 504278397 0.000000e+00 1397.0
7 TraesCS2B01G309800 chr2A 86.656 607 29 18 1 563 504285456 504284858 4.070000e-175 625.0
8 TraesCS2B01G309800 chr2A 98.261 345 6 0 4443 4787 504275671 504275327 5.300000e-169 604.0
9 TraesCS2B01G309800 chr2A 87.336 229 17 5 4248 4476 40762262 40762046 7.950000e-63 252.0
10 TraesCS2B01G309800 chr2A 95.200 125 2 1 4285 4409 504275793 504275673 1.360000e-45 195.0
11 TraesCS2B01G309800 chr2A 86.087 115 6 5 629 733 504284837 504284723 1.090000e-21 115.0
12 TraesCS2B01G309800 chr4A 87.826 230 14 6 4248 4476 661951958 661951742 1.710000e-64 257.0
13 TraesCS2B01G309800 chr3B 87.391 230 15 4 4248 4476 456361942 456361726 7.950000e-63 252.0
14 TraesCS2B01G309800 chr3B 86.441 236 18 5 4242 4476 807584425 807584647 3.700000e-61 246.0
15 TraesCS2B01G309800 chr1B 87.391 230 15 5 4248 4476 69432496 69432280 7.950000e-63 252.0
16 TraesCS2B01G309800 chr1B 100.000 28 0 0 577 604 37795215 37795242 9.000000e-03 52.8
17 TraesCS2B01G309800 chr6A 86.441 236 18 3 4242 4476 196698 196920 3.700000e-61 246.0
18 TraesCS2B01G309800 chr7A 100.000 30 0 0 577 606 515033886 515033915 6.690000e-04 56.5
19 TraesCS2B01G309800 chr5A 100.000 30 0 0 577 606 328931749 328931778 6.690000e-04 56.5
20 TraesCS2B01G309800 chr4D 100.000 29 0 0 575 603 455487142 455487170 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G309800 chr2B 442791003 442795789 4786 False 8841.000000 8841 100.000000 1 4787 1 chr2B.!!$F1 4786
1 TraesCS2B01G309800 chr2D 373220953 373225661 4708 False 2242.333333 5315 92.223333 1 4787 3 chr2D.!!$F1 4786
2 TraesCS2B01G309800 chr2A 504275327 504279398 4071 True 1514.500000 3862 95.171250 717 4787 4 chr2A.!!$R2 4070
3 TraesCS2B01G309800 chr2A 504284723 504285456 733 True 370.000000 625 86.371500 1 733 2 chr2A.!!$R3 732

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
371 418 0.036858 TGATGACGGCGGACATTGAA 60.037 50.0 13.24 4.37 0.0 2.69 F
2186 2360 0.596082 GGTTTGACATGTTCCCCACG 59.404 55.0 0.00 0.00 0.0 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2310 2484 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.0 0.00 0.0 0.00 3.82 R
4049 4253 0.318955 GGTTTGCGTTGCTGAATGCT 60.319 50.0 3.02 0.0 43.51 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 69 3.624861 GTGAAATACCTCTGGCATGTCTG 59.375 47.826 0.00 0.00 0.00 3.51
76 81 2.082231 GCATGTCTGACAGTGCTCATT 58.918 47.619 24.77 4.73 33.20 2.57
141 146 1.756538 TGTCCTCTCGAAGCATATGCA 59.243 47.619 28.62 7.86 45.16 3.96
241 288 0.594796 CAGCCACTTTTGAACCGTGC 60.595 55.000 0.00 0.00 0.00 5.34
248 295 3.190327 CACTTTTGAACCGTGCCATCATA 59.810 43.478 0.00 0.00 0.00 2.15
255 302 4.814234 TGAACCGTGCCATCATACTATTTC 59.186 41.667 0.00 0.00 0.00 2.17
256 303 4.689612 ACCGTGCCATCATACTATTTCT 57.310 40.909 0.00 0.00 0.00 2.52
340 387 3.380637 ACGAGTACTATGAAGGCGACAAT 59.619 43.478 0.00 0.00 0.00 2.71
352 399 3.548770 AGGCGACAATGACAATGATCAT 58.451 40.909 1.18 1.18 41.20 2.45
371 418 0.036858 TGATGACGGCGGACATTGAA 60.037 50.000 13.24 4.37 0.00 2.69
385 432 3.091545 ACATTGAAATCGGCATCTTGGT 58.908 40.909 0.00 0.00 0.00 3.67
418 465 3.481453 GTGGAAGCTGAAAGTCTTTCCT 58.519 45.455 20.20 9.88 38.90 3.36
472 526 2.310538 GGATGGGAAATAGTTGGCTGG 58.689 52.381 0.00 0.00 0.00 4.85
487 541 3.420893 TGGCTGGTTGACATTTTAGGAG 58.579 45.455 0.00 0.00 0.00 3.69
488 542 2.755103 GGCTGGTTGACATTTTAGGAGG 59.245 50.000 0.00 0.00 0.00 4.30
489 543 3.561313 GGCTGGTTGACATTTTAGGAGGA 60.561 47.826 0.00 0.00 0.00 3.71
490 544 4.273318 GCTGGTTGACATTTTAGGAGGAT 58.727 43.478 0.00 0.00 0.00 3.24
491 545 4.336713 GCTGGTTGACATTTTAGGAGGATC 59.663 45.833 0.00 0.00 0.00 3.36
492 546 5.749462 CTGGTTGACATTTTAGGAGGATCT 58.251 41.667 0.00 0.00 33.73 2.75
493 547 6.632672 GCTGGTTGACATTTTAGGAGGATCTA 60.633 42.308 0.00 0.00 33.73 1.98
494 548 7.265599 TGGTTGACATTTTAGGAGGATCTAA 57.734 36.000 0.00 0.00 33.73 2.10
495 549 7.110155 TGGTTGACATTTTAGGAGGATCTAAC 58.890 38.462 0.00 0.00 33.73 2.34
496 550 6.258068 GGTTGACATTTTAGGAGGATCTAACG 59.742 42.308 0.00 0.00 33.73 3.18
497 551 5.357257 TGACATTTTAGGAGGATCTAACGC 58.643 41.667 0.00 0.00 33.73 4.84
535 589 5.619981 GCATTGTGGGAGAATGTAACACTTC 60.620 44.000 0.00 0.00 33.96 3.01
548 602 5.979993 TGTAACACTTCCTGACTTGTACAA 58.020 37.500 8.28 8.28 0.00 2.41
552 606 5.057149 ACACTTCCTGACTTGTACAACATC 58.943 41.667 3.59 6.20 0.00 3.06
563 617 5.060077 ACTTGTACAACATCGTACGATTTCG 59.940 40.000 27.49 18.62 43.89 3.46
565 619 2.602878 ACAACATCGTACGATTTCGCT 58.397 42.857 27.49 4.33 44.43 4.93
566 620 2.344441 ACAACATCGTACGATTTCGCTG 59.656 45.455 27.49 18.86 44.43 5.18
568 622 3.409851 ACATCGTACGATTTCGCTGTA 57.590 42.857 27.49 0.00 44.43 2.74
569 623 3.103738 ACATCGTACGATTTCGCTGTAC 58.896 45.455 27.49 0.00 44.43 2.90
571 625 3.476295 TCGTACGATTTCGCTGTACTT 57.524 42.857 15.28 0.00 44.43 2.24
572 626 4.598406 TCGTACGATTTCGCTGTACTTA 57.402 40.909 15.28 0.00 44.43 2.24
573 627 4.968626 TCGTACGATTTCGCTGTACTTAA 58.031 39.130 15.28 0.00 44.43 1.85
574 628 5.389778 TCGTACGATTTCGCTGTACTTAAA 58.610 37.500 15.28 0.00 44.43 1.52
575 629 5.283717 TCGTACGATTTCGCTGTACTTAAAC 59.716 40.000 15.28 0.00 44.43 2.01
576 630 5.059587 CGTACGATTTCGCTGTACTTAAACA 59.940 40.000 10.44 0.00 44.43 2.83
577 631 5.260027 ACGATTTCGCTGTACTTAAACAC 57.740 39.130 0.00 0.00 44.43 3.32
579 633 5.118203 ACGATTTCGCTGTACTTAAACACTC 59.882 40.000 0.00 0.00 44.43 3.51
580 634 5.444218 CGATTTCGCTGTACTTAAACACTCC 60.444 44.000 0.00 0.00 0.00 3.85
581 635 3.308438 TCGCTGTACTTAAACACTCCC 57.692 47.619 0.00 0.00 0.00 4.30
582 636 2.895404 TCGCTGTACTTAAACACTCCCT 59.105 45.455 0.00 0.00 0.00 4.20
583 637 3.057033 TCGCTGTACTTAAACACTCCCTC 60.057 47.826 0.00 0.00 0.00 4.30
584 638 3.597255 GCTGTACTTAAACACTCCCTCC 58.403 50.000 0.00 0.00 0.00 4.30
585 639 3.007614 GCTGTACTTAAACACTCCCTCCA 59.992 47.826 0.00 0.00 0.00 3.86
586 640 4.504340 GCTGTACTTAAACACTCCCTCCAA 60.504 45.833 0.00 0.00 0.00 3.53
587 641 5.803470 GCTGTACTTAAACACTCCCTCCAAT 60.803 44.000 0.00 0.00 0.00 3.16
588 642 5.801380 TGTACTTAAACACTCCCTCCAATC 58.199 41.667 0.00 0.00 0.00 2.67
589 643 4.302559 ACTTAAACACTCCCTCCAATCC 57.697 45.455 0.00 0.00 0.00 3.01
590 644 3.270877 CTTAAACACTCCCTCCAATCCG 58.729 50.000 0.00 0.00 0.00 4.18
591 645 1.358152 AAACACTCCCTCCAATCCGA 58.642 50.000 0.00 0.00 0.00 4.55
592 646 1.358152 AACACTCCCTCCAATCCGAA 58.642 50.000 0.00 0.00 0.00 4.30
593 647 1.584724 ACACTCCCTCCAATCCGAAT 58.415 50.000 0.00 0.00 0.00 3.34
594 648 1.916181 ACACTCCCTCCAATCCGAATT 59.084 47.619 0.00 0.00 0.00 2.17
595 649 3.112263 ACACTCCCTCCAATCCGAATTA 58.888 45.455 0.00 0.00 0.00 1.40
596 650 3.521937 ACACTCCCTCCAATCCGAATTAA 59.478 43.478 0.00 0.00 0.00 1.40
597 651 4.166144 ACACTCCCTCCAATCCGAATTAAT 59.834 41.667 0.00 0.00 0.00 1.40
598 652 5.133221 CACTCCCTCCAATCCGAATTAATT 58.867 41.667 0.00 0.00 0.00 1.40
599 653 5.009010 CACTCCCTCCAATCCGAATTAATTG 59.991 44.000 5.17 0.00 33.57 2.32
600 654 5.104109 ACTCCCTCCAATCCGAATTAATTGA 60.104 40.000 5.17 0.00 35.35 2.57
601 655 5.130350 TCCCTCCAATCCGAATTAATTGAC 58.870 41.667 5.17 0.00 35.35 3.18
602 656 4.024048 CCCTCCAATCCGAATTAATTGACG 60.024 45.833 5.17 3.90 35.35 4.35
603 657 4.527564 CTCCAATCCGAATTAATTGACGC 58.472 43.478 5.17 0.00 35.35 5.19
604 658 3.942115 TCCAATCCGAATTAATTGACGCA 59.058 39.130 5.17 0.00 35.35 5.24
605 659 4.035091 TCCAATCCGAATTAATTGACGCAG 59.965 41.667 5.17 0.00 35.35 5.18
619 673 1.656652 ACGCAGTCTCATACAATGGC 58.343 50.000 0.00 0.00 29.74 4.40
620 674 1.066215 ACGCAGTCTCATACAATGGCA 60.066 47.619 0.00 0.00 29.74 4.92
621 675 2.009051 CGCAGTCTCATACAATGGCAA 58.991 47.619 0.00 0.00 0.00 4.52
622 676 2.419673 CGCAGTCTCATACAATGGCAAA 59.580 45.455 0.00 0.00 0.00 3.68
623 677 3.119884 CGCAGTCTCATACAATGGCAAAA 60.120 43.478 0.00 0.00 0.00 2.44
624 678 4.418392 GCAGTCTCATACAATGGCAAAAG 58.582 43.478 0.00 0.00 0.00 2.27
625 679 4.676196 GCAGTCTCATACAATGGCAAAAGG 60.676 45.833 0.00 0.00 0.00 3.11
626 680 4.701651 CAGTCTCATACAATGGCAAAAGGA 59.298 41.667 0.00 0.00 0.00 3.36
627 681 4.946157 AGTCTCATACAATGGCAAAAGGAG 59.054 41.667 0.00 0.00 0.00 3.69
687 745 8.806146 CCTTTGGATTATTCTTTATATGGGTGG 58.194 37.037 0.00 0.00 0.00 4.61
694 759 9.890915 ATTATTCTTTATATGGGTGGCCTTTTA 57.109 29.630 3.32 0.00 0.00 1.52
748 813 6.810911 TCATAGAGGCAAAACTAGATGAGAC 58.189 40.000 0.00 0.00 0.00 3.36
749 814 6.609212 TCATAGAGGCAAAACTAGATGAGACT 59.391 38.462 0.00 0.00 0.00 3.24
750 815 7.780271 TCATAGAGGCAAAACTAGATGAGACTA 59.220 37.037 0.00 0.00 0.00 2.59
783 848 3.264897 GAGGCGTGGCGTGCATAG 61.265 66.667 0.00 0.00 0.00 2.23
891 966 3.793144 GCTTCGCTTCGCCCACTG 61.793 66.667 0.00 0.00 0.00 3.66
996 1075 1.749334 GATTCGACGGCTCCTCCCAT 61.749 60.000 0.00 0.00 0.00 4.00
1097 1176 3.537874 CAGGGTCGGGGTCGGATC 61.538 72.222 0.00 0.00 36.95 3.36
1591 1679 4.391216 CAGATGCTCCTCTTACTTGTGTTG 59.609 45.833 0.00 0.00 0.00 3.33
1593 1681 4.150897 TGCTCCTCTTACTTGTGTTGTT 57.849 40.909 0.00 0.00 0.00 2.83
1595 1683 5.676552 TGCTCCTCTTACTTGTGTTGTTAA 58.323 37.500 0.00 0.00 0.00 2.01
1596 1684 6.296026 TGCTCCTCTTACTTGTGTTGTTAAT 58.704 36.000 0.00 0.00 0.00 1.40
1598 1686 7.934665 TGCTCCTCTTACTTGTGTTGTTAATAA 59.065 33.333 0.00 0.00 0.00 1.40
1599 1687 8.947115 GCTCCTCTTACTTGTGTTGTTAATAAT 58.053 33.333 0.00 0.00 0.00 1.28
1601 1689 9.226606 TCCTCTTACTTGTGTTGTTAATAATGG 57.773 33.333 0.00 0.00 0.00 3.16
1626 1714 8.308931 GGGTATATGCAATTGAATCATTGATGT 58.691 33.333 10.34 0.00 0.00 3.06
1703 1791 5.904362 AGTTGAAGGCAATAAATCAGGAC 57.096 39.130 0.00 0.00 36.22 3.85
1740 1912 8.210265 TCAATGTACTGCCTATCATGTATGAAA 58.790 33.333 0.00 0.00 40.69 2.69
1853 2025 1.602377 GCTAGTTTCAAGGTGCGTGTT 59.398 47.619 0.00 0.00 0.00 3.32
1877 2049 2.038426 TCCGCTTGAAGGTGATGAAGAA 59.962 45.455 0.00 0.00 0.00 2.52
1949 2121 1.963855 TGTGGCACCGGTTGATTCG 60.964 57.895 16.26 0.00 0.00 3.34
2007 2179 2.664568 TGTTGACTCTGTTAATACGCGC 59.335 45.455 5.73 0.00 0.00 6.86
2008 2180 2.640346 TGACTCTGTTAATACGCGCA 57.360 45.000 5.73 0.00 0.00 6.09
2067 2241 8.685257 TTCAGGTCTATGGTGGATCATATTAT 57.315 34.615 0.00 0.00 0.00 1.28
2186 2360 0.596082 GGTTTGACATGTTCCCCACG 59.404 55.000 0.00 0.00 0.00 4.94
2204 2378 1.002366 CGTTGCTAGTCACTGATGGC 58.998 55.000 0.00 0.00 0.00 4.40
2310 2484 3.126858 AGTGAAACATCACACACACACAC 59.873 43.478 11.17 0.00 42.68 3.82
2311 2485 3.077359 TGAAACATCACACACACACACA 58.923 40.909 0.00 0.00 0.00 3.72
2312 2486 3.120025 TGAAACATCACACACACACACAC 60.120 43.478 0.00 0.00 0.00 3.82
2313 2487 2.106477 ACATCACACACACACACACA 57.894 45.000 0.00 0.00 0.00 3.72
2314 2488 1.737236 ACATCACACACACACACACAC 59.263 47.619 0.00 0.00 0.00 3.82
2315 2489 1.736681 CATCACACACACACACACACA 59.263 47.619 0.00 0.00 0.00 3.72
2316 2490 1.152510 TCACACACACACACACACAC 58.847 50.000 0.00 0.00 0.00 3.82
2317 2491 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2318 2492 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2319 2493 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2320 2494 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2321 2495 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2322 2496 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2323 2497 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2324 2498 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2325 2499 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2333 2507 2.095314 CACACACACACACACACACAAT 60.095 45.455 0.00 0.00 0.00 2.71
2478 2652 7.595819 ACATGTCTTGAATTCTTTTTGGGTA 57.404 32.000 7.05 0.00 0.00 3.69
2574 2749 9.757227 CTTTAAAAACATGGTTATTCAGGTCAA 57.243 29.630 0.00 0.00 30.87 3.18
2618 2793 0.757188 ACGTGATCCTCCCCTGCTAG 60.757 60.000 0.00 0.00 0.00 3.42
2974 3149 4.157246 GGGGTTACTTGATTGGAAACCTT 58.843 43.478 0.00 0.00 39.62 3.50
3028 3203 2.838202 TCTGGGGAACTTGTGGTCTATC 59.162 50.000 0.00 0.00 0.00 2.08
3232 3407 0.456824 TGCGAGTCTTGCAGATCGTC 60.457 55.000 10.94 6.61 37.44 4.20
3369 3544 7.840342 AATTTTGATGTGTACTTTGCAAACA 57.160 28.000 8.05 5.50 0.00 2.83
3501 3680 3.207669 CGGCCTGAGATTGCAGCC 61.208 66.667 0.00 0.91 34.56 4.85
3836 4015 4.811557 GGGTTCATAGATGTAGCAGTGTTC 59.188 45.833 0.00 0.00 0.00 3.18
3842 4021 7.161404 TCATAGATGTAGCAGTGTTCAGTTTT 58.839 34.615 0.00 0.00 0.00 2.43
3843 4022 7.661437 TCATAGATGTAGCAGTGTTCAGTTTTT 59.339 33.333 0.00 0.00 0.00 1.94
3998 4199 4.872124 CAGATGCACAGTTATGCTACTCAA 59.128 41.667 0.00 0.00 46.28 3.02
4049 4253 4.508551 AGCAATTACTGATGTCCCATCA 57.491 40.909 6.72 6.72 0.00 3.07
4057 4261 2.879026 CTGATGTCCCATCAGCATTCAG 59.121 50.000 18.27 0.00 39.03 3.02
4079 4283 3.610677 GCAACGCAAACCCATAACATAAC 59.389 43.478 0.00 0.00 0.00 1.89
4126 4330 7.865706 TGATTTCTAAATCCTTGCTCCTAAC 57.134 36.000 11.82 0.00 43.19 2.34
4218 4467 1.741706 AGCTCATTTTCAGATGCCACG 59.258 47.619 0.00 0.00 0.00 4.94
4219 4468 1.796617 GCTCATTTTCAGATGCCACGC 60.797 52.381 0.00 0.00 0.00 5.34
4242 4491 5.108385 GGGGACGAACTATTATTGCATTG 57.892 43.478 0.00 0.00 0.00 2.82
4243 4492 4.537015 GGGACGAACTATTATTGCATTGC 58.463 43.478 0.46 0.46 0.00 3.56
4244 4493 4.036262 GGGACGAACTATTATTGCATTGCA 59.964 41.667 7.38 7.38 36.47 4.08
4245 4494 5.278463 GGGACGAACTATTATTGCATTGCAT 60.278 40.000 12.95 5.57 38.76 3.96
4246 4495 6.072728 GGGACGAACTATTATTGCATTGCATA 60.073 38.462 12.95 4.15 38.76 3.14
4247 4496 6.797033 GGACGAACTATTATTGCATTGCATAC 59.203 38.462 12.95 0.00 38.76 2.39
4248 4497 7.258022 ACGAACTATTATTGCATTGCATACA 57.742 32.000 12.95 0.00 38.76 2.29
4249 4498 7.355017 ACGAACTATTATTGCATTGCATACAG 58.645 34.615 12.95 8.17 38.76 2.74
4250 4499 7.012327 ACGAACTATTATTGCATTGCATACAGT 59.988 33.333 12.95 8.76 38.76 3.55
4251 4500 8.495148 CGAACTATTATTGCATTGCATACAGTA 58.505 33.333 12.95 0.00 38.76 2.74
4252 4501 9.599322 GAACTATTATTGCATTGCATACAGTAC 57.401 33.333 12.95 0.00 38.76 2.73
4253 4502 8.675705 ACTATTATTGCATTGCATACAGTACA 57.324 30.769 12.95 0.00 38.76 2.90
4254 4503 8.777413 ACTATTATTGCATTGCATACAGTACAG 58.223 33.333 12.95 5.50 38.76 2.74
4255 4504 3.763097 TTGCATTGCATACAGTACAGC 57.237 42.857 12.95 0.77 38.76 4.40
4256 4505 2.709213 TGCATTGCATACAGTACAGCA 58.291 42.857 7.38 5.61 31.71 4.41
4257 4506 2.419673 TGCATTGCATACAGTACAGCAC 59.580 45.455 7.38 0.69 36.62 4.40
4258 4507 2.419673 GCATTGCATACAGTACAGCACA 59.580 45.455 3.15 2.94 36.62 4.57
4259 4508 3.119884 GCATTGCATACAGTACAGCACAA 60.120 43.478 3.15 0.00 36.62 3.33
4260 4509 4.406069 CATTGCATACAGTACAGCACAAC 58.594 43.478 8.65 0.00 36.62 3.32
4261 4510 3.118905 TGCATACAGTACAGCACAACA 57.881 42.857 5.61 0.00 31.05 3.33
4262 4511 3.066380 TGCATACAGTACAGCACAACAG 58.934 45.455 5.61 0.00 31.05 3.16
4263 4512 2.159653 GCATACAGTACAGCACAACAGC 60.160 50.000 0.00 0.00 0.00 4.40
4264 4513 2.900716 TACAGTACAGCACAACAGCA 57.099 45.000 0.00 0.00 36.85 4.41
4265 4514 1.586422 ACAGTACAGCACAACAGCAG 58.414 50.000 0.00 0.00 36.85 4.24
4266 4515 0.236711 CAGTACAGCACAACAGCAGC 59.763 55.000 0.00 0.00 36.85 5.25
4267 4516 0.179048 AGTACAGCACAACAGCAGCA 60.179 50.000 0.00 0.00 36.85 4.41
4268 4517 0.877071 GTACAGCACAACAGCAGCAT 59.123 50.000 0.00 0.00 36.85 3.79
4269 4518 0.876399 TACAGCACAACAGCAGCATG 59.124 50.000 0.00 0.00 40.87 4.06
4308 4557 1.636148 ATTGCTTGCAAGACCATGGT 58.364 45.000 30.39 19.89 0.00 3.55
4336 4585 6.680874 TTCAAAAGAAAAATGCTTGCACAT 57.319 29.167 0.00 0.00 0.00 3.21
4415 4664 2.559668 CACCCGACCTTACTCAGTTACA 59.440 50.000 0.00 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 69 1.728971 CTCGTCCAAATGAGCACTGTC 59.271 52.381 0.00 0.00 31.96 3.51
76 81 7.504924 AATCATCAAGTTTTTACTCGTCCAA 57.495 32.000 0.00 0.00 0.00 3.53
141 146 4.097892 GGGAAATTTCTCATTATGTGGCGT 59.902 41.667 17.42 0.00 0.00 5.68
205 222 4.574013 GTGGCTGAATGAAGAAGGATACAG 59.426 45.833 0.00 0.00 41.41 2.74
211 228 4.279169 TCAAAAGTGGCTGAATGAAGAAGG 59.721 41.667 0.00 0.00 0.00 3.46
340 387 2.874086 GCCGTCATCATGATCATTGTCA 59.126 45.455 5.16 0.00 0.00 3.58
352 399 0.036858 TTCAATGTCCGCCGTCATCA 60.037 50.000 0.00 0.00 0.00 3.07
385 432 4.030216 TCAGCTTCCACCTACATACATCA 58.970 43.478 0.00 0.00 0.00 3.07
427 474 3.187227 CGATGTTAAACTGAACAGCTGCT 59.813 43.478 15.27 0.00 42.27 4.24
428 475 3.058914 ACGATGTTAAACTGAACAGCTGC 60.059 43.478 15.27 0.00 42.27 5.25
429 476 4.457810 CACGATGTTAAACTGAACAGCTG 58.542 43.478 13.48 13.48 42.27 4.24
430 477 3.498397 CCACGATGTTAAACTGAACAGCT 59.502 43.478 1.46 0.00 42.27 4.24
472 526 6.238130 GCGTTAGATCCTCCTAAAATGTCAAC 60.238 42.308 0.00 0.00 31.19 3.18
497 551 0.466922 CAATGCTTCCCAGCCCTAGG 60.467 60.000 0.06 0.06 46.74 3.02
508 562 4.458989 TGTTACATTCTCCCACAATGCTTC 59.541 41.667 0.00 0.00 35.02 3.86
535 589 3.606777 CGTACGATGTTGTACAAGTCAGG 59.393 47.826 10.44 3.90 43.89 3.86
552 606 5.059587 TGTTTAAGTACAGCGAAATCGTACG 59.940 40.000 9.53 9.53 40.32 3.67
563 617 3.007614 TGGAGGGAGTGTTTAAGTACAGC 59.992 47.826 0.00 0.00 0.00 4.40
565 619 5.280317 GGATTGGAGGGAGTGTTTAAGTACA 60.280 44.000 0.00 0.00 0.00 2.90
566 620 5.183969 GGATTGGAGGGAGTGTTTAAGTAC 58.816 45.833 0.00 0.00 0.00 2.73
568 622 3.307480 CGGATTGGAGGGAGTGTTTAAGT 60.307 47.826 0.00 0.00 0.00 2.24
569 623 3.055385 TCGGATTGGAGGGAGTGTTTAAG 60.055 47.826 0.00 0.00 0.00 1.85
571 625 2.542550 TCGGATTGGAGGGAGTGTTTA 58.457 47.619 0.00 0.00 0.00 2.01
572 626 1.358152 TCGGATTGGAGGGAGTGTTT 58.642 50.000 0.00 0.00 0.00 2.83
573 627 1.358152 TTCGGATTGGAGGGAGTGTT 58.642 50.000 0.00 0.00 0.00 3.32
574 628 1.584724 ATTCGGATTGGAGGGAGTGT 58.415 50.000 0.00 0.00 0.00 3.55
575 629 2.717639 AATTCGGATTGGAGGGAGTG 57.282 50.000 0.00 0.00 0.00 3.51
576 630 5.104109 TCAATTAATTCGGATTGGAGGGAGT 60.104 40.000 0.00 0.00 34.74 3.85
577 631 5.239525 GTCAATTAATTCGGATTGGAGGGAG 59.760 44.000 0.00 0.00 34.74 4.30
579 633 4.024048 CGTCAATTAATTCGGATTGGAGGG 60.024 45.833 0.00 0.00 34.74 4.30
580 634 4.554723 GCGTCAATTAATTCGGATTGGAGG 60.555 45.833 0.00 5.13 34.74 4.30
581 635 4.035091 TGCGTCAATTAATTCGGATTGGAG 59.965 41.667 0.00 5.51 34.74 3.86
582 636 3.942115 TGCGTCAATTAATTCGGATTGGA 59.058 39.130 0.00 0.00 34.74 3.53
583 637 4.201910 ACTGCGTCAATTAATTCGGATTGG 60.202 41.667 0.00 1.11 34.74 3.16
584 638 4.908736 ACTGCGTCAATTAATTCGGATTG 58.091 39.130 0.00 3.83 35.18 2.67
585 639 4.876107 AGACTGCGTCAATTAATTCGGATT 59.124 37.500 10.27 0.00 34.60 3.01
586 640 4.442706 AGACTGCGTCAATTAATTCGGAT 58.557 39.130 10.27 0.69 34.60 4.18
587 641 3.857052 AGACTGCGTCAATTAATTCGGA 58.143 40.909 10.27 7.20 34.60 4.55
588 642 3.616821 TGAGACTGCGTCAATTAATTCGG 59.383 43.478 10.27 2.65 34.60 4.30
589 643 4.840401 TGAGACTGCGTCAATTAATTCG 57.160 40.909 0.00 1.34 34.60 3.34
590 644 7.234187 TGTATGAGACTGCGTCAATTAATTC 57.766 36.000 0.00 0.00 34.60 2.17
591 645 7.609760 TTGTATGAGACTGCGTCAATTAATT 57.390 32.000 10.52 0.00 34.60 1.40
592 646 7.254898 CCATTGTATGAGACTGCGTCAATTAAT 60.255 37.037 10.52 0.00 34.60 1.40
593 647 6.037062 CCATTGTATGAGACTGCGTCAATTAA 59.963 38.462 10.52 0.00 34.60 1.40
594 648 5.523552 CCATTGTATGAGACTGCGTCAATTA 59.476 40.000 10.52 0.00 34.60 1.40
595 649 4.333649 CCATTGTATGAGACTGCGTCAATT 59.666 41.667 10.52 0.00 34.60 2.32
596 650 3.873361 CCATTGTATGAGACTGCGTCAAT 59.127 43.478 10.52 6.74 34.60 2.57
597 651 3.261580 CCATTGTATGAGACTGCGTCAA 58.738 45.455 10.52 0.55 34.60 3.18
598 652 2.892374 CCATTGTATGAGACTGCGTCA 58.108 47.619 10.52 0.00 34.60 4.35
599 653 1.594862 GCCATTGTATGAGACTGCGTC 59.405 52.381 1.15 1.15 0.00 5.19
600 654 1.066215 TGCCATTGTATGAGACTGCGT 60.066 47.619 0.00 0.00 0.00 5.24
601 655 1.655484 TGCCATTGTATGAGACTGCG 58.345 50.000 0.00 0.00 0.00 5.18
602 656 4.418392 CTTTTGCCATTGTATGAGACTGC 58.582 43.478 0.00 0.00 0.00 4.40
603 657 4.701651 TCCTTTTGCCATTGTATGAGACTG 59.298 41.667 0.00 0.00 0.00 3.51
604 658 4.922206 TCCTTTTGCCATTGTATGAGACT 58.078 39.130 0.00 0.00 0.00 3.24
605 659 4.702131 ACTCCTTTTGCCATTGTATGAGAC 59.298 41.667 0.00 0.00 0.00 3.36
606 660 4.922206 ACTCCTTTTGCCATTGTATGAGA 58.078 39.130 0.00 0.00 0.00 3.27
607 661 5.066505 GGTACTCCTTTTGCCATTGTATGAG 59.933 44.000 0.00 0.00 0.00 2.90
608 662 4.947388 GGTACTCCTTTTGCCATTGTATGA 59.053 41.667 0.00 0.00 0.00 2.15
609 663 4.704540 TGGTACTCCTTTTGCCATTGTATG 59.295 41.667 0.00 0.00 34.23 2.39
610 664 4.929479 TGGTACTCCTTTTGCCATTGTAT 58.071 39.130 0.00 0.00 34.23 2.29
611 665 4.374689 TGGTACTCCTTTTGCCATTGTA 57.625 40.909 0.00 0.00 34.23 2.41
612 666 3.237268 TGGTACTCCTTTTGCCATTGT 57.763 42.857 0.00 0.00 34.23 2.71
613 667 4.019174 AGATGGTACTCCTTTTGCCATTG 58.981 43.478 0.00 0.00 39.74 2.82
614 668 4.322057 AGATGGTACTCCTTTTGCCATT 57.678 40.909 0.00 0.00 39.74 3.16
615 669 4.322057 AAGATGGTACTCCTTTTGCCAT 57.678 40.909 0.00 0.00 42.04 4.40
616 670 3.806949 AAGATGGTACTCCTTTTGCCA 57.193 42.857 0.00 0.00 34.23 4.92
617 671 4.522789 TGAAAAGATGGTACTCCTTTTGCC 59.477 41.667 18.09 10.03 39.33 4.52
618 672 5.241728 ACTGAAAAGATGGTACTCCTTTTGC 59.758 40.000 18.09 12.71 39.33 3.68
619 673 6.884280 ACTGAAAAGATGGTACTCCTTTTG 57.116 37.500 18.09 11.18 39.33 2.44
620 674 6.649557 CGTACTGAAAAGATGGTACTCCTTTT 59.350 38.462 15.14 15.14 40.83 2.27
621 675 6.164176 CGTACTGAAAAGATGGTACTCCTTT 58.836 40.000 0.00 0.00 34.26 3.11
622 676 5.245526 ACGTACTGAAAAGATGGTACTCCTT 59.754 40.000 0.00 0.00 34.26 3.36
623 677 4.771054 ACGTACTGAAAAGATGGTACTCCT 59.229 41.667 0.00 0.00 34.26 3.69
624 678 5.069501 ACGTACTGAAAAGATGGTACTCC 57.930 43.478 0.00 0.00 34.26 3.85
625 679 6.850555 AGTACGTACTGAAAAGATGGTACTC 58.149 40.000 26.87 0.00 35.68 2.59
626 680 6.830873 AGTACGTACTGAAAAGATGGTACT 57.169 37.500 26.87 0.00 35.72 2.73
627 681 7.880059 AAAGTACGTACTGAAAAGATGGTAC 57.120 36.000 28.00 0.00 36.50 3.34
677 735 6.903534 TCCAAATTTAAAAGGCCACCCATATA 59.096 34.615 5.01 0.00 0.00 0.86
678 736 5.728741 TCCAAATTTAAAAGGCCACCCATAT 59.271 36.000 5.01 0.00 0.00 1.78
679 737 5.094387 TCCAAATTTAAAAGGCCACCCATA 58.906 37.500 5.01 0.00 0.00 2.74
687 745 6.912051 CAGTTGCTTTTCCAAATTTAAAAGGC 59.088 34.615 20.17 19.07 41.10 4.35
694 759 9.558396 TTATCAATCAGTTGCTTTTCCAAATTT 57.442 25.926 0.00 0.00 35.26 1.82
748 813 0.825425 TCTCCCTGCCTCGATGCTAG 60.825 60.000 13.93 9.14 0.00 3.42
749 814 0.825425 CTCTCCCTGCCTCGATGCTA 60.825 60.000 13.93 0.09 0.00 3.49
750 815 2.042537 TCTCCCTGCCTCGATGCT 60.043 61.111 13.93 0.00 0.00 3.79
779 844 1.339610 CTCGGTGCTTCTCTCCCTATG 59.660 57.143 0.00 0.00 0.00 2.23
783 848 1.216710 CACTCGGTGCTTCTCTCCC 59.783 63.158 0.00 0.00 0.00 4.30
853 928 1.370414 CGTTTTGGCTGCTTGTCGG 60.370 57.895 0.00 0.00 0.00 4.79
891 966 1.418373 GATGCAAACAAAGGCGTTCC 58.582 50.000 0.00 0.00 0.00 3.62
923 998 1.584483 GATTGATTGGCTGTGCGCG 60.584 57.895 0.00 0.00 40.44 6.86
924 999 1.226773 GGATTGATTGGCTGTGCGC 60.227 57.895 0.00 0.00 38.13 6.09
969 1048 1.445582 GCCGTCGAATCGAACCTGT 60.446 57.895 7.01 0.00 37.72 4.00
996 1075 3.738429 CTGTGCGATCCCCATGCGA 62.738 63.158 0.00 0.00 0.00 5.10
1228 1316 3.470888 CAAGTCCCTCCCGGCGAT 61.471 66.667 9.30 0.00 0.00 4.58
1332 1420 2.973899 CCGCAGTAGCTCACCACT 59.026 61.111 0.00 0.00 39.10 4.00
1377 1465 2.879233 GCTGGAGTCGTTGGGGTCA 61.879 63.158 0.00 0.00 0.00 4.02
1598 1686 8.425237 TCAATGATTCAATTGCATATACCCAT 57.575 30.769 0.00 0.00 37.44 4.00
1599 1687 7.836479 TCAATGATTCAATTGCATATACCCA 57.164 32.000 0.00 0.00 37.44 4.51
1600 1688 8.308931 ACATCAATGATTCAATTGCATATACCC 58.691 33.333 0.00 0.00 37.44 3.69
1622 1710 5.212532 ACTGAGGAGCATCAAGATACATC 57.787 43.478 0.00 0.00 36.25 3.06
1626 1714 4.033009 TGGAACTGAGGAGCATCAAGATA 58.967 43.478 0.00 0.00 36.25 1.98
1627 1715 2.842496 TGGAACTGAGGAGCATCAAGAT 59.158 45.455 0.00 0.00 36.25 2.40
1628 1716 2.259917 TGGAACTGAGGAGCATCAAGA 58.740 47.619 0.00 0.00 36.25 3.02
1629 1717 2.775911 TGGAACTGAGGAGCATCAAG 57.224 50.000 0.00 0.00 36.25 3.02
1630 1718 3.726557 ATTGGAACTGAGGAGCATCAA 57.273 42.857 0.00 0.00 36.25 2.57
1679 1767 6.599244 TGTCCTGATTTATTGCCTTCAACTAG 59.401 38.462 0.00 0.00 34.60 2.57
1853 2025 1.071542 TCATCACCTTCAAGCGGAACA 59.928 47.619 0.00 0.00 0.00 3.18
1877 2049 1.004440 GACTTCCTCAGTTGCGCCT 60.004 57.895 4.18 0.00 35.01 5.52
2023 2195 4.023291 TGAAAACCATCATTAAGGCCCTC 58.977 43.478 0.00 0.00 0.00 4.30
2025 2197 3.132824 CCTGAAAACCATCATTAAGGCCC 59.867 47.826 0.00 0.00 0.00 5.80
2026 2198 3.769300 ACCTGAAAACCATCATTAAGGCC 59.231 43.478 0.00 0.00 0.00 5.19
2067 2241 5.022122 TGAACATTTTCCATATGCCCTCAA 58.978 37.500 0.00 0.00 0.00 3.02
2186 2360 2.275318 GAGCCATCAGTGACTAGCAAC 58.725 52.381 12.03 3.97 0.00 4.17
2204 2378 1.793258 GACGATCCATCATGCAGGAG 58.207 55.000 7.33 0.00 37.34 3.69
2310 2484 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2311 2485 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2312 2486 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2313 2487 1.598882 TTGTGTGTGTGTGTGTGTGT 58.401 45.000 0.00 0.00 0.00 3.72
2314 2488 2.917701 ATTGTGTGTGTGTGTGTGTG 57.082 45.000 0.00 0.00 0.00 3.82
2315 2489 4.216472 TGTTTATTGTGTGTGTGTGTGTGT 59.784 37.500 0.00 0.00 0.00 3.72
2316 2490 4.727475 TGTTTATTGTGTGTGTGTGTGTG 58.273 39.130 0.00 0.00 0.00 3.82
2317 2491 4.674101 GCTGTTTATTGTGTGTGTGTGTGT 60.674 41.667 0.00 0.00 0.00 3.72
2318 2492 3.790820 GCTGTTTATTGTGTGTGTGTGTG 59.209 43.478 0.00 0.00 0.00 3.82
2319 2493 3.441922 TGCTGTTTATTGTGTGTGTGTGT 59.558 39.130 0.00 0.00 0.00 3.72
2320 2494 4.026293 TGCTGTTTATTGTGTGTGTGTG 57.974 40.909 0.00 0.00 0.00 3.82
2321 2495 4.710423 TTGCTGTTTATTGTGTGTGTGT 57.290 36.364 0.00 0.00 0.00 3.72
2322 2496 6.400579 TTTTTGCTGTTTATTGTGTGTGTG 57.599 33.333 0.00 0.00 0.00 3.82
2323 2497 5.063312 GCTTTTTGCTGTTTATTGTGTGTGT 59.937 36.000 0.00 0.00 38.95 3.72
2324 2498 5.063186 TGCTTTTTGCTGTTTATTGTGTGTG 59.937 36.000 0.00 0.00 43.37 3.82
2325 2499 5.063312 GTGCTTTTTGCTGTTTATTGTGTGT 59.937 36.000 0.00 0.00 43.37 3.72
2333 2507 5.907207 TGGTTATGTGCTTTTTGCTGTTTA 58.093 33.333 0.00 0.00 43.37 2.01
2478 2652 2.079158 CCGTGCAGTGAAATGAGTGAT 58.921 47.619 0.00 0.00 0.00 3.06
2574 2749 9.726438 GTGGCACTATTAACCATAATCTTAGAT 57.274 33.333 11.13 0.00 35.53 1.98
2618 2793 6.952773 AGTAATCCTCACTCATCTACAGAC 57.047 41.667 0.00 0.00 0.00 3.51
2917 3092 0.541863 ATTCAACTAGCCACGGAGGG 59.458 55.000 0.00 0.00 38.09 4.30
2962 3137 2.893489 AGCTGGTTGAAGGTTTCCAATC 59.107 45.455 0.00 0.00 0.00 2.67
2974 3149 2.885135 AATCCATGTGAGCTGGTTGA 57.115 45.000 0.00 0.00 35.19 3.18
3028 3203 2.116366 GTTGTTGCCAAACTGCTTACG 58.884 47.619 0.00 0.00 37.19 3.18
3052 3227 3.513909 TCCAGAATAGCATGGGATTGG 57.486 47.619 0.00 0.00 37.19 3.16
3121 3296 5.080337 TCCTCGAGAGCAGGATAACATATT 58.920 41.667 15.71 0.00 34.14 1.28
3232 3407 9.459640 CAAAATAAATGTTATGAGGAGATGCAG 57.540 33.333 0.00 0.00 0.00 4.41
3369 3544 7.111247 TCAATCAAAACAACAAGGTCTTGAT 57.889 32.000 16.55 2.82 42.93 2.57
3372 3547 8.695456 AGTAATCAATCAAAACAACAAGGTCTT 58.305 29.630 0.00 0.00 0.00 3.01
3446 3625 1.152963 ACCGTGAGCTGCCAAAAGT 60.153 52.632 0.00 0.00 0.00 2.66
3501 3680 4.767255 GCCACCTCCACGGCTCTG 62.767 72.222 0.00 0.00 45.29 3.35
3764 3943 7.062749 ACTTACACAATGTAGGTCTTCTTCA 57.937 36.000 0.00 0.00 38.55 3.02
3867 4046 7.857456 TCACTGTAATATGTACAAATCCTGGT 58.143 34.615 0.00 0.00 0.00 4.00
3998 4199 4.216411 ACCATTTTATAGTGCTGACCGT 57.784 40.909 0.00 0.00 0.00 4.83
4049 4253 0.318955 GGTTTGCGTTGCTGAATGCT 60.319 50.000 3.02 0.00 43.51 3.79
4057 4261 2.362169 ATGTTATGGGTTTGCGTTGC 57.638 45.000 0.00 0.00 0.00 4.17
4079 4283 1.067060 TGTCTGTCACGGACTTCACAG 59.933 52.381 17.84 0.00 40.15 3.66
4105 4309 6.388619 AGGTTAGGAGCAAGGATTTAGAAA 57.611 37.500 0.00 0.00 0.00 2.52
4159 4363 8.705594 AGTAGTTGTTGCTGGATAGTATGTAAT 58.294 33.333 0.00 0.00 0.00 1.89
4188 4437 5.793817 TCTGAAAATGAGCTGTTACTGCTA 58.206 37.500 16.35 6.35 38.70 3.49
4196 4445 2.490903 GTGGCATCTGAAAATGAGCTGT 59.509 45.455 0.00 0.00 0.00 4.40
4218 4467 1.529865 GCAATAATAGTTCGTCCCCGC 59.470 52.381 0.00 0.00 0.00 6.13
4219 4468 2.828877 TGCAATAATAGTTCGTCCCCG 58.171 47.619 0.00 0.00 0.00 5.73
4224 4473 7.012327 ACTGTATGCAATGCAATAATAGTTCGT 59.988 33.333 13.45 0.00 43.62 3.85
4238 4487 4.083377 TGTTGTGCTGTACTGTATGCAATG 60.083 41.667 16.14 0.00 37.17 2.82
4239 4488 4.071423 TGTTGTGCTGTACTGTATGCAAT 58.929 39.130 16.14 0.00 37.17 3.56
4240 4489 3.471680 TGTTGTGCTGTACTGTATGCAA 58.528 40.909 16.14 7.70 37.17 4.08
4241 4490 3.066380 CTGTTGTGCTGTACTGTATGCA 58.934 45.455 12.27 12.27 0.00 3.96
4242 4491 2.159653 GCTGTTGTGCTGTACTGTATGC 60.160 50.000 1.46 8.25 0.00 3.14
4243 4492 3.066380 TGCTGTTGTGCTGTACTGTATG 58.934 45.455 1.46 0.00 0.00 2.39
4244 4493 3.329386 CTGCTGTTGTGCTGTACTGTAT 58.671 45.455 1.46 0.00 0.00 2.29
4245 4494 2.754472 CTGCTGTTGTGCTGTACTGTA 58.246 47.619 1.46 0.00 0.00 2.74
4246 4495 1.586422 CTGCTGTTGTGCTGTACTGT 58.414 50.000 1.46 0.00 0.00 3.55
4247 4496 0.236711 GCTGCTGTTGTGCTGTACTG 59.763 55.000 0.00 0.00 34.93 2.74
4248 4497 0.179048 TGCTGCTGTTGTGCTGTACT 60.179 50.000 0.00 0.00 34.93 2.73
4249 4498 0.877071 ATGCTGCTGTTGTGCTGTAC 59.123 50.000 0.00 0.00 34.93 2.90
4250 4499 0.876399 CATGCTGCTGTTGTGCTGTA 59.124 50.000 0.00 0.00 34.93 2.74
4251 4500 1.658114 CATGCTGCTGTTGTGCTGT 59.342 52.632 0.00 0.00 34.93 4.40
4252 4501 1.733041 GCATGCTGCTGTTGTGCTG 60.733 57.895 11.37 0.00 40.96 4.41
4253 4502 2.649034 GCATGCTGCTGTTGTGCT 59.351 55.556 11.37 0.00 40.96 4.40
4270 4519 2.309528 TTGCATTACGGCTGGTAGAG 57.690 50.000 0.00 0.00 31.46 2.43
4271 4520 2.942376 CAATTGCATTACGGCTGGTAGA 59.058 45.455 0.00 0.00 31.46 2.59
4272 4521 2.541588 GCAATTGCATTACGGCTGGTAG 60.542 50.000 25.36 0.00 41.59 3.18
4273 4522 1.403679 GCAATTGCATTACGGCTGGTA 59.596 47.619 25.36 0.00 41.59 3.25
4274 4523 0.173255 GCAATTGCATTACGGCTGGT 59.827 50.000 25.36 0.00 41.59 4.00
4275 4524 0.457035 AGCAATTGCATTACGGCTGG 59.543 50.000 30.89 0.00 45.16 4.85
4276 4525 1.921887 CAAGCAATTGCATTACGGCTG 59.078 47.619 30.89 11.19 45.16 4.85
4277 4526 1.736696 GCAAGCAATTGCATTACGGCT 60.737 47.619 30.89 5.95 46.60 5.52
4278 4527 0.646895 GCAAGCAATTGCATTACGGC 59.353 50.000 30.89 19.39 46.60 5.68
4336 4585 4.020485 CAGATATCAGATGAGCCATGGTCA 60.020 45.833 14.67 15.60 44.17 4.02
4471 4720 2.122729 CAGTCCCCACTCCCCTGA 59.877 66.667 0.00 0.00 0.00 3.86
4722 4971 2.044946 AACTGGGCCTTGATCCGC 60.045 61.111 4.53 0.00 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.