Multiple sequence alignment - TraesCS2B01G309700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G309700 chr2B 100.000 5877 0 0 1601 7477 442786497 442792373 0.000000e+00 10853.0
1 TraesCS2B01G309700 chr2B 100.000 1050 0 0 1 1050 442784897 442785946 0.000000e+00 1940.0
2 TraesCS2B01G309700 chr2B 81.331 616 70 19 17 611 644221541 644220950 6.840000e-125 459.0
3 TraesCS2B01G309700 chr2B 95.122 164 8 0 3152 3315 66994806 66994643 7.440000e-65 259.0
4 TraesCS2B01G309700 chr2A 94.233 3416 114 35 3313 6669 504288249 504284858 0.000000e+00 5140.0
5 TraesCS2B01G309700 chr2A 95.450 923 36 6 1641 2558 504289819 504288898 0.000000e+00 1467.0
6 TraesCS2B01G309700 chr2A 98.167 600 10 1 2557 3155 504288846 504288247 0.000000e+00 1046.0
7 TraesCS2B01G309700 chr2A 89.763 674 20 9 6823 7477 504279398 504278755 0.000000e+00 817.0
8 TraesCS2B01G309700 chr2A 94.721 341 10 2 718 1050 504290405 504290065 2.390000e-144 523.0
9 TraesCS2B01G309700 chr2A 82.488 611 75 11 17 604 749853690 749854291 2.410000e-139 507.0
10 TraesCS2B01G309700 chr2A 86.087 115 6 5 6735 6839 504284837 504284723 1.700000e-21 115.0
11 TraesCS2B01G309700 chr2D 91.930 1425 87 15 3939 5352 373218706 373220113 0.000000e+00 1969.0
12 TraesCS2B01G309700 chr2D 89.281 1390 74 30 5351 6681 373220195 373221568 0.000000e+00 1672.0
13 TraesCS2B01G309700 chr2D 95.539 919 29 6 1641 2555 373216245 373217155 0.000000e+00 1459.0
14 TraesCS2B01G309700 chr2D 92.500 760 27 7 6735 7477 373221570 373222316 0.000000e+00 1061.0
15 TraesCS2B01G309700 chr2D 95.033 604 25 3 2557 3155 373217212 373217815 0.000000e+00 944.0
16 TraesCS2B01G309700 chr2D 93.456 596 32 7 3313 3905 373217813 373218404 0.000000e+00 878.0
17 TraesCS2B01G309700 chr2D 96.894 322 10 0 728 1049 373215668 373215989 2.370000e-149 540.0
18 TraesCS2B01G309700 chr2D 82.787 610 79 9 17 609 573905765 573906365 8.600000e-144 521.0
19 TraesCS2B01G309700 chr2D 93.258 178 8 4 3153 3329 87407364 87407538 7.440000e-65 259.0
20 TraesCS2B01G309700 chr2D 94.048 168 10 0 3151 3318 520539241 520539408 9.630000e-64 255.0
21 TraesCS2B01G309700 chr2D 92.537 67 5 0 651 717 573906480 573906546 6.180000e-16 97.1
22 TraesCS2B01G309700 chr4B 85.410 610 61 14 21 610 532717945 532718546 6.410000e-170 608.0
23 TraesCS2B01G309700 chr4B 96.341 164 6 0 3153 3316 135218049 135218212 3.440000e-68 270.0
24 TraesCS2B01G309700 chr5D 84.628 605 63 9 21 604 559101012 559101607 6.510000e-160 575.0
25 TraesCS2B01G309700 chr5D 89.552 67 7 0 651 717 559101716 559101782 1.340000e-12 86.1
26 TraesCS2B01G309700 chr7A 84.228 615 67 9 17 609 700123024 700122418 8.420000e-159 571.0
27 TraesCS2B01G309700 chr7A 83.793 617 68 16 17 609 8798627 8799235 2.360000e-154 556.0
28 TraesCS2B01G309700 chr7A 83.028 601 67 14 22 599 105225317 105224729 5.170000e-141 512.0
29 TraesCS2B01G309700 chr7A 93.750 176 10 1 3148 3322 689378287 689378112 5.750000e-66 263.0
30 TraesCS2B01G309700 chr7A 100.000 30 0 0 6683 6712 515033886 515033915 1.000000e-03 56.5
31 TraesCS2B01G309700 chr6D 84.117 617 67 12 16 609 461852927 461852319 1.090000e-157 568.0
32 TraesCS2B01G309700 chr4A 82.792 616 76 15 17 610 395018833 395019440 2.390000e-144 523.0
33 TraesCS2B01G309700 chr4A 95.181 166 7 1 3153 3317 517406471 517406636 2.070000e-65 261.0
34 TraesCS2B01G309700 chr4A 94.030 67 4 0 651 717 395019530 395019596 1.330000e-17 102.0
35 TraesCS2B01G309700 chr6B 82.692 572 62 17 56 604 35378757 35379314 2.440000e-129 473.0
36 TraesCS2B01G309700 chr7B 80.782 614 80 18 17 603 579826731 579827333 5.320000e-121 446.0
37 TraesCS2B01G309700 chr7B 92.537 67 5 0 651 717 453735865 453735931 6.180000e-16 97.1
38 TraesCS2B01G309700 chr5B 94.611 167 9 0 3153 3319 490757573 490757407 7.440000e-65 259.0
39 TraesCS2B01G309700 chr3D 92.697 178 9 4 3153 3329 459077430 459077256 3.460000e-63 254.0
40 TraesCS2B01G309700 chr1A 92.697 178 10 2 3149 3325 232104319 232104494 3.460000e-63 254.0
41 TraesCS2B01G309700 chr5A 100.000 30 0 0 6683 6712 328931749 328931778 1.000000e-03 56.5
42 TraesCS2B01G309700 chr4D 100.000 29 0 0 6681 6709 455487142 455487170 4.000000e-03 54.7
43 TraesCS2B01G309700 chr1B 100.000 28 0 0 6683 6710 37795215 37795242 1.400000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G309700 chr2B 442784897 442792373 7476 False 6396.500000 10853 100.0000 1 7477 2 chr2B.!!$F1 7476
1 TraesCS2B01G309700 chr2B 644220950 644221541 591 True 459.000000 459 81.3310 17 611 1 chr2B.!!$R2 594
2 TraesCS2B01G309700 chr2A 504284723 504290405 5682 True 1658.200000 5140 93.7316 718 6839 5 chr2A.!!$R2 6121
3 TraesCS2B01G309700 chr2A 504278755 504279398 643 True 817.000000 817 89.7630 6823 7477 1 chr2A.!!$R1 654
4 TraesCS2B01G309700 chr2A 749853690 749854291 601 False 507.000000 507 82.4880 17 604 1 chr2A.!!$F1 587
5 TraesCS2B01G309700 chr2D 373215668 373222316 6648 False 1217.571429 1969 93.5190 728 7477 7 chr2D.!!$F3 6749
6 TraesCS2B01G309700 chr2D 573905765 573906546 781 False 309.050000 521 87.6620 17 717 2 chr2D.!!$F4 700
7 TraesCS2B01G309700 chr4B 532717945 532718546 601 False 608.000000 608 85.4100 21 610 1 chr4B.!!$F2 589
8 TraesCS2B01G309700 chr5D 559101012 559101782 770 False 330.550000 575 87.0900 21 717 2 chr5D.!!$F1 696
9 TraesCS2B01G309700 chr7A 700122418 700123024 606 True 571.000000 571 84.2280 17 609 1 chr7A.!!$R3 592
10 TraesCS2B01G309700 chr7A 8798627 8799235 608 False 556.000000 556 83.7930 17 609 1 chr7A.!!$F1 592
11 TraesCS2B01G309700 chr7A 105224729 105225317 588 True 512.000000 512 83.0280 22 599 1 chr7A.!!$R1 577
12 TraesCS2B01G309700 chr6D 461852319 461852927 608 True 568.000000 568 84.1170 16 609 1 chr6D.!!$R1 593
13 TraesCS2B01G309700 chr4A 395018833 395019596 763 False 312.500000 523 88.4110 17 717 2 chr4A.!!$F2 700
14 TraesCS2B01G309700 chr6B 35378757 35379314 557 False 473.000000 473 82.6920 56 604 1 chr6B.!!$F1 548
15 TraesCS2B01G309700 chr7B 579826731 579827333 602 False 446.000000 446 80.7820 17 603 1 chr7B.!!$F2 586

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
842 959 0.178944 TCCAGAACGTTCCCCAGAGA 60.179 55.000 24.22 9.59 0.00 3.10 F
1632 1755 0.879090 TCGCAAGTCGCTACTCTTGA 59.121 50.000 8.74 0.00 42.22 3.02 F
1658 1939 1.146041 TGCTATGTGCCATCGGGAC 59.854 57.895 0.00 0.00 44.48 4.46 F
3320 3670 2.771943 GGAATGGAGGGAGTACATGACA 59.228 50.000 0.00 0.00 0.00 3.58 F
3665 4018 2.073117 TTTCGCAGTAGTTCATCGCA 57.927 45.000 0.00 0.00 0.00 5.10 F
4177 4799 3.119708 GGTCATGCTTGAACCATCACTTC 60.120 47.826 6.36 0.00 33.13 3.01 F
4957 5587 3.387699 CCTTGTCCCCACTGTTGAAATTT 59.612 43.478 0.00 0.00 0.00 1.82 F
6247 6975 1.756538 TGTCCTCTCGAAGCATATGCA 59.243 47.619 28.62 7.86 45.16 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2342 2626 2.981805 GCAATATGTGCGGCATGTATTG 59.018 45.455 27.78 27.78 45.10 1.90 R
3407 3757 1.317613 AGACAGAGCCAGAGATAGCG 58.682 55.000 0.00 0.00 0.00 4.26 R
3437 3789 3.446161 ACTATACAGCAACCTCGCACTAA 59.554 43.478 0.00 0.00 0.00 2.24 R
4361 4988 1.230324 GCTCATATCGAACCTTGCCC 58.770 55.000 0.00 0.00 0.00 5.36 R
4929 5558 1.278127 ACAGTGGGGACAAGGTAATCG 59.722 52.381 0.00 0.00 46.06 3.34 R
6170 6898 1.728971 CTCGTCCAAATGAGCACTGTC 59.271 52.381 0.00 0.00 31.96 3.51 R
6458 7228 0.036858 TTCAATGTCCGCCGTCATCA 60.037 50.000 0.00 0.00 0.00 3.07 R
7075 7877 1.445582 GCCGTCGAATCGAACCTGT 60.446 57.895 7.01 0.00 37.72 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 5.290493 TCCTCACAATAGTATTGCGGAAT 57.710 39.130 20.52 7.49 0.00 3.01
51 52 3.190327 CGTTTGCACATATCCCTTGTTGA 59.810 43.478 0.00 0.00 0.00 3.18
54 55 5.999205 TTGCACATATCCCTTGTTGAATT 57.001 34.783 0.00 0.00 0.00 2.17
55 56 5.999205 TGCACATATCCCTTGTTGAATTT 57.001 34.783 0.00 0.00 0.00 1.82
81 88 6.403866 TTGCAATGGAGATTTTGTTGTAGT 57.596 33.333 0.00 0.00 0.00 2.73
133 143 6.757897 TGTTTGTCATTATGGATGGACTTC 57.242 37.500 0.00 0.00 36.37 3.01
134 144 6.484288 TGTTTGTCATTATGGATGGACTTCT 58.516 36.000 0.00 0.00 36.37 2.85
135 145 6.375174 TGTTTGTCATTATGGATGGACTTCTG 59.625 38.462 0.00 0.00 36.37 3.02
136 146 4.454678 TGTCATTATGGATGGACTTCTGC 58.545 43.478 0.00 0.00 36.37 4.26
137 147 3.496130 GTCATTATGGATGGACTTCTGCG 59.504 47.826 0.00 0.00 36.37 5.18
138 148 3.387699 TCATTATGGATGGACTTCTGCGA 59.612 43.478 0.00 0.00 36.37 5.10
139 149 3.904800 TTATGGATGGACTTCTGCGAA 57.095 42.857 0.00 0.00 0.00 4.70
142 152 2.176045 TGGATGGACTTCTGCGAAGTA 58.824 47.619 19.19 9.19 0.00 2.24
162 172 2.443416 ACAACACAGATGATGCTGCAT 58.557 42.857 16.20 16.20 39.51 3.96
166 177 5.824097 ACAACACAGATGATGCTGCATAATA 59.176 36.000 16.23 5.66 39.51 0.98
224 241 2.189594 TGTGGGATGACTTCTGCAAG 57.810 50.000 0.00 0.00 35.50 4.01
228 245 1.538047 GGATGACTTCTGCAAGCCAA 58.462 50.000 0.00 0.00 32.09 4.52
262 290 1.790623 GGCACGCGTCGAATTATGTAT 59.209 47.619 9.86 0.00 0.00 2.29
264 292 2.811104 CACGCGTCGAATTATGTATGC 58.189 47.619 9.86 0.00 0.00 3.14
280 308 2.902343 GCCTTGGGCGGCTGATAC 60.902 66.667 9.56 0.00 46.63 2.24
282 310 1.077787 CCTTGGGCGGCTGATACAA 60.078 57.895 9.56 2.99 0.00 2.41
339 367 1.132436 CACGTGTGGCGCAACTATG 59.868 57.895 17.46 10.37 46.11 2.23
353 381 3.676049 GCAACTATGGTCGTGATCAGTCA 60.676 47.826 0.00 0.00 0.00 3.41
376 404 5.063944 CAGGTGATTCTAATCGTTGTTCCTG 59.936 44.000 0.00 0.00 38.26 3.86
387 415 2.415357 CGTTGTTCCTGTTGCAACAAGT 60.415 45.455 30.62 0.00 41.90 3.16
469 498 7.227156 ACTTTTTCTTCTCTAATCTCCTGCAA 58.773 34.615 0.00 0.00 0.00 4.08
520 553 5.136828 TCCCTATTTTTCTGCAACAAGACA 58.863 37.500 0.00 0.00 0.00 3.41
551 593 1.647545 AACAACATCTCCGCCGCATG 61.648 55.000 0.00 0.00 0.00 4.06
604 647 7.307694 CAAAAATTGCAACACATCTCTAGCTA 58.692 34.615 0.00 0.00 0.00 3.32
623 683 2.167219 CGTCATCGTTCGCTGCCAT 61.167 57.895 0.00 0.00 0.00 4.40
630 727 1.695893 CGTTCGCTGCCATCGATTGT 61.696 55.000 0.00 0.00 35.75 2.71
633 731 1.570813 TCGCTGCCATCGATTGTAAG 58.429 50.000 0.00 0.00 0.00 2.34
655 772 3.464720 AAGATGAGGGAGAGAGACACA 57.535 47.619 0.00 0.00 0.00 3.72
717 834 4.713553 TGCCGGCTGATTAGAATCATTTA 58.286 39.130 29.70 0.00 43.87 1.40
718 835 5.129634 TGCCGGCTGATTAGAATCATTTAA 58.870 37.500 29.70 0.00 43.87 1.52
719 836 5.592282 TGCCGGCTGATTAGAATCATTTAAA 59.408 36.000 29.70 0.00 43.87 1.52
720 837 6.096141 TGCCGGCTGATTAGAATCATTTAAAA 59.904 34.615 29.70 0.00 43.87 1.52
721 838 6.978080 GCCGGCTGATTAGAATCATTTAAAAA 59.022 34.615 22.15 0.00 43.87 1.94
773 890 4.846779 AATAATTCACCCGCGCAATAAT 57.153 36.364 8.75 0.00 0.00 1.28
774 891 2.490328 AATTCACCCGCGCAATAATG 57.510 45.000 8.75 0.00 0.00 1.90
795 912 1.699730 TGACCGTCCGATCATGGTAT 58.300 50.000 0.00 0.00 35.65 2.73
805 922 4.058124 CCGATCATGGTATCAACACGATT 58.942 43.478 0.00 0.00 35.39 3.34
842 959 0.178944 TCCAGAACGTTCCCCAGAGA 60.179 55.000 24.22 9.59 0.00 3.10
1631 1754 0.985549 GTCGCAAGTCGCTACTCTTG 59.014 55.000 0.00 0.00 42.44 3.02
1632 1755 0.879090 TCGCAAGTCGCTACTCTTGA 59.121 50.000 8.74 0.00 42.22 3.02
1634 1757 1.585668 CGCAAGTCGCTACTCTTGATG 59.414 52.381 8.74 0.00 42.22 3.07
1637 1760 3.735208 GCAAGTCGCTACTCTTGATGCTA 60.735 47.826 8.74 0.00 42.22 3.49
1638 1761 4.615949 CAAGTCGCTACTCTTGATGCTAT 58.384 43.478 0.00 0.00 42.22 2.97
1639 1762 4.235939 AGTCGCTACTCTTGATGCTATG 57.764 45.455 0.00 0.00 0.00 2.23
1658 1939 1.146041 TGCTATGTGCCATCGGGAC 59.854 57.895 0.00 0.00 44.48 4.46
1756 2039 6.303733 GTGCGTTATAAAATTGCGTTAGTGTT 59.696 34.615 0.00 0.00 0.00 3.32
1779 2062 7.882791 TGTTTGCTTCATTCTAGGTCAGATAAA 59.117 33.333 0.00 0.00 31.77 1.40
1812 2095 4.624882 TGGTAAAAATTGCTGCGCTATTTG 59.375 37.500 9.73 0.00 41.39 2.32
2042 2325 7.596621 ACACATCATCTCGTGTTATCATATGAC 59.403 37.037 7.78 0.00 43.71 3.06
2341 2625 4.628333 CCAGGCTTTGCTATTTTCACAATG 59.372 41.667 0.00 0.00 0.00 2.82
2342 2626 4.092383 CAGGCTTTGCTATTTTCACAATGC 59.908 41.667 0.00 0.00 41.27 3.56
2555 2845 7.387673 CCAAAAACTCCCAAAATGATTTACCTC 59.612 37.037 0.00 0.00 0.00 3.85
2558 2848 6.840780 ACTCCCAAAATGATTTACCTCAAG 57.159 37.500 0.00 0.00 0.00 3.02
2567 2913 5.055265 TGATTTACCTCAAGGGAACACAA 57.945 39.130 0.29 0.00 37.86 3.33
2581 2927 4.636206 GGGAACACAATAAGATGGTCTGAC 59.364 45.833 0.00 0.00 32.84 3.51
2598 2944 5.763204 GGTCTGACCTCTCAACAAATTGTTA 59.237 40.000 19.53 0.00 35.14 2.41
2882 3230 5.824429 TGCTTCTTTCTGTTTTGTGATCTG 58.176 37.500 0.00 0.00 0.00 2.90
3061 3411 5.537188 CTTCTCAAGTATCATGCTAGGGTC 58.463 45.833 0.00 0.00 0.00 4.46
3158 3508 9.569122 TGCTTTTATGGATAGTAAAATACTCCC 57.431 33.333 0.00 0.00 40.14 4.30
3159 3509 9.794719 GCTTTTATGGATAGTAAAATACTCCCT 57.205 33.333 0.00 0.00 40.14 4.20
3162 3512 6.607004 ATGGATAGTAAAATACTCCCTCCG 57.393 41.667 0.00 0.00 40.14 4.63
3163 3513 5.461327 TGGATAGTAAAATACTCCCTCCGT 58.539 41.667 0.00 0.00 40.14 4.69
3164 3514 5.901276 TGGATAGTAAAATACTCCCTCCGTT 59.099 40.000 0.00 0.00 40.14 4.44
3165 3515 6.041296 TGGATAGTAAAATACTCCCTCCGTTC 59.959 42.308 0.00 0.00 40.14 3.95
3166 3516 4.750021 AGTAAAATACTCCCTCCGTTCC 57.250 45.455 0.00 0.00 32.47 3.62
3167 3517 4.359996 AGTAAAATACTCCCTCCGTTCCT 58.640 43.478 0.00 0.00 32.47 3.36
3168 3518 5.522641 AGTAAAATACTCCCTCCGTTCCTA 58.477 41.667 0.00 0.00 32.47 2.94
3169 3519 6.141790 AGTAAAATACTCCCTCCGTTCCTAT 58.858 40.000 0.00 0.00 32.47 2.57
3170 3520 7.300658 AGTAAAATACTCCCTCCGTTCCTATA 58.699 38.462 0.00 0.00 32.47 1.31
3171 3521 7.954620 AGTAAAATACTCCCTCCGTTCCTATAT 59.045 37.037 0.00 0.00 32.47 0.86
3172 3522 9.247861 GTAAAATACTCCCTCCGTTCCTATATA 57.752 37.037 0.00 0.00 0.00 0.86
3173 3523 8.912614 AAAATACTCCCTCCGTTCCTATATAT 57.087 34.615 0.00 0.00 0.00 0.86
3176 3526 9.643735 AATACTCCCTCCGTTCCTATATATAAG 57.356 37.037 0.00 0.00 0.00 1.73
3177 3527 7.042106 ACTCCCTCCGTTCCTATATATAAGT 57.958 40.000 0.00 0.00 0.00 2.24
3178 3528 7.118060 ACTCCCTCCGTTCCTATATATAAGTC 58.882 42.308 0.00 0.00 0.00 3.01
3179 3529 7.036717 ACTCCCTCCGTTCCTATATATAAGTCT 60.037 40.741 0.00 0.00 0.00 3.24
3180 3530 7.344913 TCCCTCCGTTCCTATATATAAGTCTC 58.655 42.308 0.00 0.00 0.00 3.36
3181 3531 7.184204 TCCCTCCGTTCCTATATATAAGTCTCT 59.816 40.741 0.00 0.00 0.00 3.10
3182 3532 7.499895 CCCTCCGTTCCTATATATAAGTCTCTC 59.500 44.444 0.00 0.00 0.00 3.20
3183 3533 8.269317 CCTCCGTTCCTATATATAAGTCTCTCT 58.731 40.741 0.00 0.00 0.00 3.10
3200 3550 6.771934 TCTCTCTAGAGATTCCACTATGGA 57.228 41.667 22.59 9.55 44.56 3.41
3201 3551 6.539173 TCTCTCTAGAGATTCCACTATGGAC 58.461 44.000 22.59 0.00 45.26 4.02
3202 3552 6.331572 TCTCTCTAGAGATTCCACTATGGACT 59.668 42.308 22.59 0.00 45.26 3.85
3203 3553 7.514473 TCTCTCTAGAGATTCCACTATGGACTA 59.486 40.741 22.59 0.00 45.26 2.59
3204 3554 7.455058 TCTCTAGAGATTCCACTATGGACTAC 58.545 42.308 18.76 0.00 38.27 2.73
3205 3555 7.072581 TCTCTAGAGATTCCACTATGGACTACA 59.927 40.741 18.76 0.00 38.27 2.74
3211 3561 4.442401 TCCACTATGGACTACATACGGA 57.558 45.455 0.00 0.00 42.67 4.69
3212 3562 4.395625 TCCACTATGGACTACATACGGAG 58.604 47.826 0.00 0.00 42.67 4.63
3213 3563 3.057456 CCACTATGGACTACATACGGAGC 60.057 52.174 0.00 0.00 40.96 4.70
3214 3564 3.568430 CACTATGGACTACATACGGAGCA 59.432 47.826 0.00 0.00 41.03 4.26
3215 3565 4.037565 CACTATGGACTACATACGGAGCAA 59.962 45.833 0.00 0.00 41.03 3.91
3216 3566 4.647853 ACTATGGACTACATACGGAGCAAA 59.352 41.667 0.00 0.00 41.03 3.68
3217 3567 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
3218 3568 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
3219 3569 4.188462 TGGACTACATACGGAGCAAAATG 58.812 43.478 0.00 0.00 0.00 2.32
3220 3570 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
3221 3571 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
3222 3572 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
3223 3573 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
3224 3574 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3225 3575 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
3226 3576 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
3227 3577 5.415701 ACATACGGAGCAAAATGAGTGAATT 59.584 36.000 0.00 0.00 0.00 2.17
3228 3578 4.853924 ACGGAGCAAAATGAGTGAATTT 57.146 36.364 0.00 0.00 0.00 1.82
3229 3579 5.957842 ACGGAGCAAAATGAGTGAATTTA 57.042 34.783 0.00 0.00 0.00 1.40
3230 3580 5.699839 ACGGAGCAAAATGAGTGAATTTAC 58.300 37.500 0.00 0.00 0.00 2.01
3231 3581 5.240623 ACGGAGCAAAATGAGTGAATTTACA 59.759 36.000 2.93 0.00 0.00 2.41
3232 3582 5.569059 CGGAGCAAAATGAGTGAATTTACAC 59.431 40.000 2.93 0.00 40.60 2.90
3275 3625 7.432148 ACATCCATATGTAGTTTGTAGTGGA 57.568 36.000 1.24 0.00 44.66 4.02
3276 3626 7.857456 ACATCCATATGTAGTTTGTAGTGGAA 58.143 34.615 1.24 0.00 44.66 3.53
3277 3627 8.494433 ACATCCATATGTAGTTTGTAGTGGAAT 58.506 33.333 1.24 0.00 44.66 3.01
3278 3628 8.993121 CATCCATATGTAGTTTGTAGTGGAATC 58.007 37.037 1.24 0.00 37.96 2.52
3279 3629 8.319057 TCCATATGTAGTTTGTAGTGGAATCT 57.681 34.615 1.24 0.00 32.02 2.40
3280 3630 8.421784 TCCATATGTAGTTTGTAGTGGAATCTC 58.578 37.037 1.24 0.00 32.02 2.75
3281 3631 8.424918 CCATATGTAGTTTGTAGTGGAATCTCT 58.575 37.037 1.24 0.00 0.00 3.10
3289 3639 9.274206 AGTTTGTAGTGGAATCTCTAAAAAGAC 57.726 33.333 3.22 0.00 30.99 3.01
3290 3640 9.274206 GTTTGTAGTGGAATCTCTAAAAAGACT 57.726 33.333 3.22 0.00 30.99 3.24
3291 3641 9.847224 TTTGTAGTGGAATCTCTAAAAAGACTT 57.153 29.630 0.00 0.00 28.58 3.01
3309 3659 9.868160 AAAAGACTTATATTTAGGAATGGAGGG 57.132 33.333 0.00 0.00 0.00 4.30
3310 3660 8.814448 AAGACTTATATTTAGGAATGGAGGGA 57.186 34.615 0.00 0.00 0.00 4.20
3311 3661 8.442660 AGACTTATATTTAGGAATGGAGGGAG 57.557 38.462 0.00 0.00 0.00 4.30
3312 3662 8.019652 AGACTTATATTTAGGAATGGAGGGAGT 58.980 37.037 0.00 0.00 0.00 3.85
3313 3663 9.322769 GACTTATATTTAGGAATGGAGGGAGTA 57.677 37.037 0.00 0.00 0.00 2.59
3314 3664 9.102453 ACTTATATTTAGGAATGGAGGGAGTAC 57.898 37.037 0.00 0.00 0.00 2.73
3320 3670 2.771943 GGAATGGAGGGAGTACATGACA 59.228 50.000 0.00 0.00 0.00 3.58
3328 3678 5.359194 AGGGAGTACATGACAGTAATTGG 57.641 43.478 0.00 0.00 0.00 3.16
3407 3757 9.378551 TGTTGTCACCATATATTCAGTTTAGTC 57.621 33.333 0.00 0.00 0.00 2.59
3437 3789 3.445008 TGGCTCTGTCTTCTAAGATGGT 58.555 45.455 0.00 0.00 37.39 3.55
3443 3795 5.967088 TCTGTCTTCTAAGATGGTTAGTGC 58.033 41.667 0.00 0.00 37.39 4.40
3495 3847 4.712337 TCTTCGAGAGCCTTTAGATTTCCT 59.288 41.667 0.00 0.00 0.00 3.36
3607 3959 4.706842 AGGTAATGTTCCACTGACAAGT 57.293 40.909 0.00 0.00 36.98 3.16
3665 4018 2.073117 TTTCGCAGTAGTTCATCGCA 57.927 45.000 0.00 0.00 0.00 5.10
3731 4084 5.422214 TGGGTTTTATGGTGTTTGTTGTT 57.578 34.783 0.00 0.00 0.00 2.83
3927 4281 3.464720 TCTTCACTCTCTCCTGTCCAT 57.535 47.619 0.00 0.00 0.00 3.41
3934 4288 4.338118 CACTCTCTCCTGTCCATCTAGAAC 59.662 50.000 0.00 0.00 0.00 3.01
3935 4289 4.017958 ACTCTCTCCTGTCCATCTAGAACA 60.018 45.833 0.00 0.00 0.00 3.18
3936 4290 5.136068 TCTCTCCTGTCCATCTAGAACAT 57.864 43.478 0.00 0.00 0.00 2.71
3986 4608 5.491070 TGTCTCCATTACTGGACAATCTTG 58.509 41.667 0.00 0.00 46.95 3.02
4177 4799 3.119708 GGTCATGCTTGAACCATCACTTC 60.120 47.826 6.36 0.00 33.13 3.01
4189 4811 6.547141 TGAACCATCACTTCAAGATTCACTTT 59.453 34.615 0.00 0.00 36.61 2.66
4298 4921 8.539674 GTTTCTTTACGCAATTGTCTTTGATTT 58.460 29.630 7.40 0.00 0.00 2.17
4299 4922 8.641499 TTCTTTACGCAATTGTCTTTGATTTT 57.359 26.923 7.40 0.00 0.00 1.82
4326 4949 5.938322 TGCGAGTTCTCCAATCAAAATTAC 58.062 37.500 0.00 0.00 0.00 1.89
4576 5205 5.221185 CCTGGCTGTCATTTTGAAGGATATG 60.221 44.000 0.00 0.00 0.00 1.78
4868 5497 9.311916 CAATCTTTCAATAGAAGGTACTCTCTG 57.688 37.037 7.32 0.00 38.49 3.35
4929 5558 6.467723 CATCCAGATGTATAAACTAACCGC 57.532 41.667 0.00 0.00 34.23 5.68
4957 5587 3.387699 CCTTGTCCCCACTGTTGAAATTT 59.612 43.478 0.00 0.00 0.00 1.82
5440 6159 8.925700 GGTGAAAAGTGAAAATGAATCCAATAC 58.074 33.333 0.00 0.00 0.00 1.89
5594 6313 6.761242 TCGGTCCAGATTATACATTGAAAGTG 59.239 38.462 0.00 0.00 0.00 3.16
5725 6449 7.205297 TGGGTACGCTTAACTAGAATATCAAC 58.795 38.462 11.59 0.00 0.00 3.18
5905 6629 5.007682 GCAAGAGGTTAGTTTGTATTCCCA 58.992 41.667 0.00 0.00 0.00 4.37
5907 6631 6.152831 GCAAGAGGTTAGTTTGTATTCCCATT 59.847 38.462 0.00 0.00 0.00 3.16
5908 6632 7.309805 GCAAGAGGTTAGTTTGTATTCCCATTT 60.310 37.037 0.00 0.00 0.00 2.32
5911 6635 6.016555 AGGTTAGTTTGTATTCCCATTTGCT 58.983 36.000 0.00 0.00 0.00 3.91
5917 6641 4.533919 TGTATTCCCATTTGCTTGTTGG 57.466 40.909 0.00 0.00 0.00 3.77
5937 6661 6.127054 TGTTGGTTGTTGAAACATCCCAATTA 60.127 34.615 21.23 14.76 44.69 1.40
5942 6666 7.497579 GGTTGTTGAAACATCCCAATTAAAACT 59.502 33.333 10.86 0.00 41.02 2.66
5955 6679 6.136155 CCAATTAAAACTGGGGATGGATACT 58.864 40.000 0.00 0.00 37.61 2.12
6170 6898 3.624861 GTGAAATACCTCTGGCATGTCTG 59.375 47.826 0.00 0.00 0.00 3.51
6182 6910 2.082231 GCATGTCTGACAGTGCTCATT 58.918 47.619 24.77 4.73 33.20 2.57
6247 6975 1.756538 TGTCCTCTCGAAGCATATGCA 59.243 47.619 28.62 7.86 45.16 3.96
6361 7131 4.814234 TGAACCGTGCCATCATACTATTTC 59.186 41.667 0.00 0.00 0.00 2.17
6362 7132 4.689612 ACCGTGCCATCATACTATTTCT 57.310 40.909 0.00 0.00 0.00 2.52
6446 7216 3.380637 ACGAGTACTATGAAGGCGACAAT 59.619 43.478 0.00 0.00 0.00 2.71
6458 7228 3.548770 AGGCGACAATGACAATGATCAT 58.451 40.909 1.18 1.18 41.20 2.45
6477 7247 0.036858 TGATGACGGCGGACATTGAA 60.037 50.000 13.24 4.37 0.00 2.69
6491 7261 3.091545 ACATTGAAATCGGCATCTTGGT 58.908 40.909 0.00 0.00 0.00 3.67
6524 7294 3.481453 GTGGAAGCTGAAAGTCTTTCCT 58.519 45.455 20.20 9.88 38.90 3.36
6578 7355 2.310538 GGATGGGAAATAGTTGGCTGG 58.689 52.381 0.00 0.00 0.00 4.85
6593 7370 3.420893 TGGCTGGTTGACATTTTAGGAG 58.579 45.455 0.00 0.00 0.00 3.69
6594 7371 2.755103 GGCTGGTTGACATTTTAGGAGG 59.245 50.000 0.00 0.00 0.00 4.30
6595 7372 3.561313 GGCTGGTTGACATTTTAGGAGGA 60.561 47.826 0.00 0.00 0.00 3.71
6596 7373 4.273318 GCTGGTTGACATTTTAGGAGGAT 58.727 43.478 0.00 0.00 0.00 3.24
6597 7374 4.336713 GCTGGTTGACATTTTAGGAGGATC 59.663 45.833 0.00 0.00 0.00 3.36
6598 7375 5.749462 CTGGTTGACATTTTAGGAGGATCT 58.251 41.667 0.00 0.00 33.73 2.75
6599 7376 6.632672 GCTGGTTGACATTTTAGGAGGATCTA 60.633 42.308 0.00 0.00 33.73 1.98
6600 7377 7.265599 TGGTTGACATTTTAGGAGGATCTAA 57.734 36.000 0.00 0.00 33.73 2.10
6601 7378 7.110155 TGGTTGACATTTTAGGAGGATCTAAC 58.890 38.462 0.00 0.00 33.73 2.34
6602 7379 6.258068 GGTTGACATTTTAGGAGGATCTAACG 59.742 42.308 0.00 0.00 33.73 3.18
6603 7380 5.357257 TGACATTTTAGGAGGATCTAACGC 58.643 41.667 0.00 0.00 33.73 4.84
6641 7418 5.619981 GCATTGTGGGAGAATGTAACACTTC 60.620 44.000 0.00 0.00 33.96 3.01
6654 7431 5.979993 TGTAACACTTCCTGACTTGTACAA 58.020 37.500 8.28 8.28 0.00 2.41
6658 7435 5.057149 ACACTTCCTGACTTGTACAACATC 58.943 41.667 3.59 6.20 0.00 3.06
6669 7446 5.060077 ACTTGTACAACATCGTACGATTTCG 59.940 40.000 27.49 18.62 43.89 3.46
6671 7448 2.602878 ACAACATCGTACGATTTCGCT 58.397 42.857 27.49 4.33 44.43 4.93
6672 7449 2.344441 ACAACATCGTACGATTTCGCTG 59.656 45.455 27.49 18.86 44.43 5.18
6674 7451 3.409851 ACATCGTACGATTTCGCTGTA 57.590 42.857 27.49 0.00 44.43 2.74
6675 7452 3.103738 ACATCGTACGATTTCGCTGTAC 58.896 45.455 27.49 0.00 44.43 2.90
6677 7454 3.476295 TCGTACGATTTCGCTGTACTT 57.524 42.857 15.28 0.00 44.43 2.24
6678 7455 4.598406 TCGTACGATTTCGCTGTACTTA 57.402 40.909 15.28 0.00 44.43 2.24
6679 7456 4.968626 TCGTACGATTTCGCTGTACTTAA 58.031 39.130 15.28 0.00 44.43 1.85
6680 7457 5.389778 TCGTACGATTTCGCTGTACTTAAA 58.610 37.500 15.28 0.00 44.43 1.52
6681 7458 5.283717 TCGTACGATTTCGCTGTACTTAAAC 59.716 40.000 15.28 0.00 44.43 2.01
6682 7459 5.059587 CGTACGATTTCGCTGTACTTAAACA 59.940 40.000 10.44 0.00 44.43 2.83
6683 7460 5.260027 ACGATTTCGCTGTACTTAAACAC 57.740 39.130 0.00 0.00 44.43 3.32
6685 7462 5.118203 ACGATTTCGCTGTACTTAAACACTC 59.882 40.000 0.00 0.00 44.43 3.51
6686 7463 5.444218 CGATTTCGCTGTACTTAAACACTCC 60.444 44.000 0.00 0.00 0.00 3.85
6687 7464 3.308438 TCGCTGTACTTAAACACTCCC 57.692 47.619 0.00 0.00 0.00 4.30
6688 7465 2.895404 TCGCTGTACTTAAACACTCCCT 59.105 45.455 0.00 0.00 0.00 4.20
6689 7466 3.057033 TCGCTGTACTTAAACACTCCCTC 60.057 47.826 0.00 0.00 0.00 4.30
6690 7467 3.597255 GCTGTACTTAAACACTCCCTCC 58.403 50.000 0.00 0.00 0.00 4.30
6691 7468 3.007614 GCTGTACTTAAACACTCCCTCCA 59.992 47.826 0.00 0.00 0.00 3.86
6692 7469 4.504340 GCTGTACTTAAACACTCCCTCCAA 60.504 45.833 0.00 0.00 0.00 3.53
6693 7470 5.803470 GCTGTACTTAAACACTCCCTCCAAT 60.803 44.000 0.00 0.00 0.00 3.16
6694 7471 5.801380 TGTACTTAAACACTCCCTCCAATC 58.199 41.667 0.00 0.00 0.00 2.67
6695 7472 4.302559 ACTTAAACACTCCCTCCAATCC 57.697 45.455 0.00 0.00 0.00 3.01
6696 7473 3.270877 CTTAAACACTCCCTCCAATCCG 58.729 50.000 0.00 0.00 0.00 4.18
6697 7474 1.358152 AAACACTCCCTCCAATCCGA 58.642 50.000 0.00 0.00 0.00 4.55
6698 7475 1.358152 AACACTCCCTCCAATCCGAA 58.642 50.000 0.00 0.00 0.00 4.30
6699 7476 1.584724 ACACTCCCTCCAATCCGAAT 58.415 50.000 0.00 0.00 0.00 3.34
6700 7477 1.916181 ACACTCCCTCCAATCCGAATT 59.084 47.619 0.00 0.00 0.00 2.17
6701 7478 3.112263 ACACTCCCTCCAATCCGAATTA 58.888 45.455 0.00 0.00 0.00 1.40
6702 7479 3.521937 ACACTCCCTCCAATCCGAATTAA 59.478 43.478 0.00 0.00 0.00 1.40
6703 7480 4.166144 ACACTCCCTCCAATCCGAATTAAT 59.834 41.667 0.00 0.00 0.00 1.40
6704 7481 5.133221 CACTCCCTCCAATCCGAATTAATT 58.867 41.667 0.00 0.00 0.00 1.40
6705 7482 5.009010 CACTCCCTCCAATCCGAATTAATTG 59.991 44.000 5.17 0.00 33.57 2.32
6706 7483 5.104109 ACTCCCTCCAATCCGAATTAATTGA 60.104 40.000 5.17 0.00 35.35 2.57
6707 7484 5.130350 TCCCTCCAATCCGAATTAATTGAC 58.870 41.667 5.17 0.00 35.35 3.18
6708 7485 4.024048 CCCTCCAATCCGAATTAATTGACG 60.024 45.833 5.17 3.90 35.35 4.35
6709 7486 4.527564 CTCCAATCCGAATTAATTGACGC 58.472 43.478 5.17 0.00 35.35 5.19
6710 7487 3.942115 TCCAATCCGAATTAATTGACGCA 59.058 39.130 5.17 0.00 35.35 5.24
6711 7488 4.035091 TCCAATCCGAATTAATTGACGCAG 59.965 41.667 5.17 0.00 35.35 5.18
6725 7502 1.656652 ACGCAGTCTCATACAATGGC 58.343 50.000 0.00 0.00 29.74 4.40
6726 7503 1.066215 ACGCAGTCTCATACAATGGCA 60.066 47.619 0.00 0.00 29.74 4.92
6727 7504 2.009051 CGCAGTCTCATACAATGGCAA 58.991 47.619 0.00 0.00 0.00 4.52
6728 7505 2.419673 CGCAGTCTCATACAATGGCAAA 59.580 45.455 0.00 0.00 0.00 3.68
6729 7506 3.119884 CGCAGTCTCATACAATGGCAAAA 60.120 43.478 0.00 0.00 0.00 2.44
6730 7507 4.418392 GCAGTCTCATACAATGGCAAAAG 58.582 43.478 0.00 0.00 0.00 2.27
6731 7508 4.676196 GCAGTCTCATACAATGGCAAAAGG 60.676 45.833 0.00 0.00 0.00 3.11
6732 7509 4.701651 CAGTCTCATACAATGGCAAAAGGA 59.298 41.667 0.00 0.00 0.00 3.36
6733 7510 4.946157 AGTCTCATACAATGGCAAAAGGAG 59.054 41.667 0.00 0.00 0.00 3.69
6793 7574 8.806146 CCTTTGGATTATTCTTTATATGGGTGG 58.194 37.037 0.00 0.00 0.00 4.61
6800 7588 9.890915 ATTATTCTTTATATGGGTGGCCTTTTA 57.109 29.630 3.32 0.00 0.00 1.52
6854 7642 6.810911 TCATAGAGGCAAAACTAGATGAGAC 58.189 40.000 0.00 0.00 0.00 3.36
6855 7643 6.609212 TCATAGAGGCAAAACTAGATGAGACT 59.391 38.462 0.00 0.00 0.00 3.24
6856 7644 7.780271 TCATAGAGGCAAAACTAGATGAGACTA 59.220 37.037 0.00 0.00 0.00 2.59
6889 7677 3.264897 GAGGCGTGGCGTGCATAG 61.265 66.667 0.00 0.00 0.00 2.23
6997 7795 3.793144 GCTTCGCTTCGCCCACTG 61.793 66.667 0.00 0.00 0.00 3.66
7102 7904 1.749334 GATTCGACGGCTCCTCCCAT 61.749 60.000 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.277058 CGCAATACTATTGTGAGGAAAGAGC 60.277 44.000 14.74 0.00 32.02 4.09
1 2 5.235186 CCGCAATACTATTGTGAGGAAAGAG 59.765 44.000 19.69 1.74 34.46 2.85
2 3 5.105106 TCCGCAATACTATTGTGAGGAAAGA 60.105 40.000 19.69 7.82 38.15 2.52
3 4 5.116180 TCCGCAATACTATTGTGAGGAAAG 58.884 41.667 19.69 6.01 38.15 2.62
4 5 5.092554 TCCGCAATACTATTGTGAGGAAA 57.907 39.130 19.69 2.39 38.15 3.13
5 6 4.746535 TCCGCAATACTATTGTGAGGAA 57.253 40.909 19.69 4.18 38.15 3.36
6 7 4.746535 TTCCGCAATACTATTGTGAGGA 57.253 40.909 19.69 16.42 39.16 3.71
9 10 4.689071 ACGATTCCGCAATACTATTGTGA 58.311 39.130 19.69 10.17 39.95 3.58
10 11 5.403897 AACGATTCCGCAATACTATTGTG 57.596 39.130 13.40 13.40 39.95 3.33
11 12 5.729454 GCAAACGATTCCGCAATACTATTGT 60.729 40.000 9.97 0.00 39.95 2.71
12 13 4.670621 GCAAACGATTCCGCAATACTATTG 59.329 41.667 4.61 4.61 39.95 1.90
13 14 4.334203 TGCAAACGATTCCGCAATACTATT 59.666 37.500 0.00 0.00 39.95 1.73
14 15 3.874543 TGCAAACGATTCCGCAATACTAT 59.125 39.130 0.00 0.00 39.95 2.12
19 20 0.595588 TGTGCAAACGATTCCGCAAT 59.404 45.000 0.00 0.00 39.95 3.56
28 29 3.066291 ACAAGGGATATGTGCAAACGA 57.934 42.857 0.00 0.00 0.00 3.85
55 56 6.998968 ACAACAAAATCTCCATTGCAAAAA 57.001 29.167 1.71 0.00 0.00 1.94
103 113 8.567104 TCCATCCATAATGACAAACATATTTCG 58.433 33.333 0.00 0.00 38.38 3.46
108 118 8.274322 AGAAGTCCATCCATAATGACAAACATA 58.726 33.333 0.00 0.00 38.38 2.29
121 131 1.556911 ACTTCGCAGAAGTCCATCCAT 59.443 47.619 15.22 0.00 45.90 3.41
122 132 0.976641 ACTTCGCAGAAGTCCATCCA 59.023 50.000 15.22 0.00 45.90 3.41
133 143 3.317150 TCATCTGTGTTGTACTTCGCAG 58.683 45.455 18.34 18.34 41.66 5.18
134 144 3.378911 TCATCTGTGTTGTACTTCGCA 57.621 42.857 0.00 0.00 0.00 5.10
135 145 3.484229 GCATCATCTGTGTTGTACTTCGC 60.484 47.826 0.00 0.00 0.00 4.70
136 146 3.928992 AGCATCATCTGTGTTGTACTTCG 59.071 43.478 0.00 0.00 0.00 3.79
137 147 4.436584 GCAGCATCATCTGTGTTGTACTTC 60.437 45.833 0.00 0.00 36.49 3.01
138 148 3.438087 GCAGCATCATCTGTGTTGTACTT 59.562 43.478 0.00 0.00 36.49 2.24
139 149 3.005554 GCAGCATCATCTGTGTTGTACT 58.994 45.455 0.00 0.00 36.49 2.73
142 152 1.900245 TGCAGCATCATCTGTGTTGT 58.100 45.000 0.00 0.00 36.49 3.32
228 245 0.813184 CGTGCCTCTGCCATTTCATT 59.187 50.000 0.00 0.00 36.33 2.57
264 292 1.077787 TTGTATCAGCCGCCCAAGG 60.078 57.895 0.00 0.00 0.00 3.61
280 308 1.078709 ATCGGACGACATGCAACTTG 58.921 50.000 0.00 0.00 0.00 3.16
282 310 2.665649 TAATCGGACGACATGCAACT 57.334 45.000 0.00 0.00 0.00 3.16
339 367 0.888619 TCACCTGACTGATCACGACC 59.111 55.000 0.00 0.00 0.00 4.79
353 381 5.178797 CAGGAACAACGATTAGAATCACCT 58.821 41.667 3.31 0.00 35.11 4.00
387 415 6.791303 AGAATAGAACGTTTTGCAACAAAGA 58.209 32.000 0.46 0.00 32.54 2.52
469 498 0.467844 TTGTGCAGCATGGGTCTTGT 60.468 50.000 0.00 0.00 35.86 3.16
623 683 5.656859 TCTCCCTCATCTTTCTTACAATCGA 59.343 40.000 0.00 0.00 0.00 3.59
630 727 5.654650 GTGTCTCTCTCCCTCATCTTTCTTA 59.345 44.000 0.00 0.00 0.00 2.10
633 731 3.766591 TGTGTCTCTCTCCCTCATCTTTC 59.233 47.826 0.00 0.00 0.00 2.62
655 772 0.036732 TCGCCTTCCTTGCTTGACAT 59.963 50.000 0.00 0.00 0.00 3.06
773 890 0.108377 CCATGATCGGACGGTCAACA 60.108 55.000 11.99 4.61 0.00 3.33
774 891 0.108329 ACCATGATCGGACGGTCAAC 60.108 55.000 11.99 0.00 0.00 3.18
795 912 2.364002 TGGACAGTCAGAATCGTGTTGA 59.636 45.455 2.17 0.00 0.00 3.18
805 922 1.888436 GACCGGCATGGACAGTCAGA 61.888 60.000 0.00 0.00 42.00 3.27
842 959 2.781595 AAAACCGAGCGAGGCGATGT 62.782 55.000 0.22 0.00 33.69 3.06
1658 1939 5.049405 GTCACACCAATTCTAGTTGAACAGG 60.049 44.000 0.00 5.66 37.52 4.00
1738 2019 6.920758 TGAAGCAAACACTAACGCAATTTTAT 59.079 30.769 0.00 0.00 0.00 1.40
1756 2039 7.851228 TCTTTATCTGACCTAGAATGAAGCAA 58.149 34.615 0.00 0.00 39.30 3.91
1779 2062 6.424812 GCAGCAATTTTTACCATTTGACTTCT 59.575 34.615 0.00 0.00 0.00 2.85
1812 2095 7.440523 ACTAGTCATGAGAACCAAATCAAAC 57.559 36.000 0.00 0.00 0.00 2.93
2042 2325 9.347240 ACATATATCTCCATTTTCTTGTGAAGG 57.653 33.333 0.00 0.00 33.28 3.46
2118 2402 7.542130 GGAGCAAAATAAGGTAAAAGACACATG 59.458 37.037 0.00 0.00 0.00 3.21
2296 2580 5.946972 TGGGAGAGTAGTCTGTAAAAGAGAG 59.053 44.000 4.36 0.00 34.84 3.20
2341 2625 4.694748 GCAATATGTGCGGCATGTATTGC 61.695 47.826 33.72 33.72 46.98 3.56
2342 2626 2.981805 GCAATATGTGCGGCATGTATTG 59.018 45.455 27.78 27.78 45.10 1.90
2356 2640 7.968246 ACAGCTAAATATAAGCGAGCAATATG 58.032 34.615 0.00 0.00 44.87 1.78
2555 2845 5.124457 CAGACCATCTTATTGTGTTCCCTTG 59.876 44.000 0.00 0.00 0.00 3.61
2558 2848 4.636206 GTCAGACCATCTTATTGTGTTCCC 59.364 45.833 0.00 0.00 0.00 3.97
2567 2913 5.026121 TGTTGAGAGGTCAGACCATCTTAT 58.974 41.667 22.31 0.00 41.95 1.73
2598 2944 5.699143 ACAGCTAAGCTTCCATTTGGATAT 58.301 37.500 0.00 0.00 44.98 1.63
2703 3049 7.507616 TGAAGTAAGAAAACCCCAAATACATGT 59.492 33.333 2.69 2.69 0.00 3.21
3155 3505 7.184204 AGAGACTTATATATAGGAACGGAGGGA 59.816 40.741 8.74 0.00 0.00 4.20
3156 3506 7.348033 AGAGACTTATATATAGGAACGGAGGG 58.652 42.308 8.74 0.00 0.00 4.30
3157 3507 8.269317 AGAGAGACTTATATATAGGAACGGAGG 58.731 40.741 8.74 0.00 0.00 4.30
3173 3523 8.160765 CCATAGTGGAATCTCTAGAGAGACTTA 58.839 40.741 25.86 13.93 46.45 2.24
3174 3524 7.004086 CCATAGTGGAATCTCTAGAGAGACTT 58.996 42.308 25.86 16.29 46.45 3.01
3175 3525 6.331572 TCCATAGTGGAATCTCTAGAGAGACT 59.668 42.308 25.86 23.03 46.73 3.24
3176 3526 6.539173 TCCATAGTGGAATCTCTAGAGAGAC 58.461 44.000 25.86 20.36 46.73 3.36
3190 3540 4.395625 CTCCGTATGTAGTCCATAGTGGA 58.604 47.826 0.00 0.00 45.98 4.02
3191 3541 3.057456 GCTCCGTATGTAGTCCATAGTGG 60.057 52.174 0.00 0.00 36.71 4.00
3192 3542 3.568430 TGCTCCGTATGTAGTCCATAGTG 59.432 47.826 0.00 0.00 36.71 2.74
3193 3543 3.828921 TGCTCCGTATGTAGTCCATAGT 58.171 45.455 0.00 0.00 36.71 2.12
3194 3544 4.848562 TTGCTCCGTATGTAGTCCATAG 57.151 45.455 0.00 0.00 36.71 2.23
3195 3545 5.601583 TTTTGCTCCGTATGTAGTCCATA 57.398 39.130 0.00 0.00 34.86 2.74
3196 3546 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
3197 3547 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
3198 3548 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
3199 3549 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
3200 3550 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
3201 3551 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
3202 3552 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
3203 3553 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
3204 3554 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3205 3555 6.515272 AAATTCACTCATTTTGCTCCGTAT 57.485 33.333 0.00 0.00 0.00 3.06
3206 3556 5.957842 AAATTCACTCATTTTGCTCCGTA 57.042 34.783 0.00 0.00 0.00 4.02
3207 3557 4.853924 AAATTCACTCATTTTGCTCCGT 57.146 36.364 0.00 0.00 0.00 4.69
3208 3558 5.569059 GTGTAAATTCACTCATTTTGCTCCG 59.431 40.000 0.00 0.00 35.68 4.63
3209 3559 6.681777 AGTGTAAATTCACTCATTTTGCTCC 58.318 36.000 0.00 0.00 44.07 4.70
3249 3599 9.154632 TCCACTACAAACTACATATGGATGTAT 57.845 33.333 7.80 0.00 45.42 2.29
3250 3600 8.541899 TCCACTACAAACTACATATGGATGTA 57.458 34.615 7.80 3.84 44.77 2.29
3252 3602 8.908786 ATTCCACTACAAACTACATATGGATG 57.091 34.615 7.80 0.00 35.03 3.51
3253 3603 8.938883 AGATTCCACTACAAACTACATATGGAT 58.061 33.333 7.80 0.00 35.03 3.41
3254 3604 8.319057 AGATTCCACTACAAACTACATATGGA 57.681 34.615 7.80 0.00 33.21 3.41
3255 3605 8.424918 AGAGATTCCACTACAAACTACATATGG 58.575 37.037 7.80 0.00 0.00 2.74
3263 3613 9.274206 GTCTTTTTAGAGATTCCACTACAAACT 57.726 33.333 0.00 0.00 0.00 2.66
3264 3614 9.274206 AGTCTTTTTAGAGATTCCACTACAAAC 57.726 33.333 0.00 0.00 0.00 2.93
3265 3615 9.847224 AAGTCTTTTTAGAGATTCCACTACAAA 57.153 29.630 0.00 0.00 0.00 2.83
3283 3633 9.868160 CCCTCCATTCCTAAATATAAGTCTTTT 57.132 33.333 0.00 0.00 0.00 2.27
3284 3634 9.237706 TCCCTCCATTCCTAAATATAAGTCTTT 57.762 33.333 0.00 0.00 0.00 2.52
3285 3635 8.814448 TCCCTCCATTCCTAAATATAAGTCTT 57.186 34.615 0.00 0.00 0.00 3.01
3286 3636 8.019652 ACTCCCTCCATTCCTAAATATAAGTCT 58.980 37.037 0.00 0.00 0.00 3.24
3287 3637 8.208575 ACTCCCTCCATTCCTAAATATAAGTC 57.791 38.462 0.00 0.00 0.00 3.01
3288 3638 9.102453 GTACTCCCTCCATTCCTAAATATAAGT 57.898 37.037 0.00 0.00 0.00 2.24
3289 3639 9.101325 TGTACTCCCTCCATTCCTAAATATAAG 57.899 37.037 0.00 0.00 0.00 1.73
3290 3640 9.629649 ATGTACTCCCTCCATTCCTAAATATAA 57.370 33.333 0.00 0.00 0.00 0.98
3291 3641 9.046846 CATGTACTCCCTCCATTCCTAAATATA 57.953 37.037 0.00 0.00 0.00 0.86
3292 3642 7.739444 TCATGTACTCCCTCCATTCCTAAATAT 59.261 37.037 0.00 0.00 0.00 1.28
3293 3643 7.016268 GTCATGTACTCCCTCCATTCCTAAATA 59.984 40.741 0.00 0.00 0.00 1.40
3294 3644 5.911178 TCATGTACTCCCTCCATTCCTAAAT 59.089 40.000 0.00 0.00 0.00 1.40
3295 3645 5.130477 GTCATGTACTCCCTCCATTCCTAAA 59.870 44.000 0.00 0.00 0.00 1.85
3296 3646 4.654262 GTCATGTACTCCCTCCATTCCTAA 59.346 45.833 0.00 0.00 0.00 2.69
3297 3647 4.223953 GTCATGTACTCCCTCCATTCCTA 58.776 47.826 0.00 0.00 0.00 2.94
3298 3648 3.041946 GTCATGTACTCCCTCCATTCCT 58.958 50.000 0.00 0.00 0.00 3.36
3299 3649 2.771943 TGTCATGTACTCCCTCCATTCC 59.228 50.000 0.00 0.00 0.00 3.01
3300 3650 3.452627 ACTGTCATGTACTCCCTCCATTC 59.547 47.826 0.00 0.00 0.00 2.67
3301 3651 3.454858 ACTGTCATGTACTCCCTCCATT 58.545 45.455 0.00 0.00 0.00 3.16
3302 3652 3.121929 ACTGTCATGTACTCCCTCCAT 57.878 47.619 0.00 0.00 0.00 3.41
3303 3653 2.623418 ACTGTCATGTACTCCCTCCA 57.377 50.000 0.00 0.00 0.00 3.86
3304 3654 5.360591 CAATTACTGTCATGTACTCCCTCC 58.639 45.833 0.00 0.00 0.00 4.30
3305 3655 5.104900 ACCAATTACTGTCATGTACTCCCTC 60.105 44.000 0.00 0.00 0.00 4.30
3306 3656 4.783227 ACCAATTACTGTCATGTACTCCCT 59.217 41.667 0.00 0.00 0.00 4.20
3307 3657 4.876107 CACCAATTACTGTCATGTACTCCC 59.124 45.833 0.00 0.00 0.00 4.30
3308 3658 5.730550 TCACCAATTACTGTCATGTACTCC 58.269 41.667 0.00 0.00 0.00 3.85
3309 3659 7.653713 CCTATCACCAATTACTGTCATGTACTC 59.346 40.741 0.00 0.00 0.00 2.59
3310 3660 7.344612 TCCTATCACCAATTACTGTCATGTACT 59.655 37.037 0.00 0.00 0.00 2.73
3311 3661 7.497595 TCCTATCACCAATTACTGTCATGTAC 58.502 38.462 0.00 0.00 0.00 2.90
3312 3662 7.669089 TCCTATCACCAATTACTGTCATGTA 57.331 36.000 0.00 0.00 0.00 2.29
3313 3663 6.560003 TCCTATCACCAATTACTGTCATGT 57.440 37.500 0.00 0.00 0.00 3.21
3314 3664 6.994496 ACATCCTATCACCAATTACTGTCATG 59.006 38.462 0.00 0.00 0.00 3.07
3320 3670 6.384015 TGAGACACATCCTATCACCAATTACT 59.616 38.462 0.00 0.00 0.00 2.24
3328 3678 4.991153 TCAGTGAGACACATCCTATCAC 57.009 45.455 4.75 0.00 40.41 3.06
3407 3757 1.317613 AGACAGAGCCAGAGATAGCG 58.682 55.000 0.00 0.00 0.00 4.26
3437 3789 3.446161 ACTATACAGCAACCTCGCACTAA 59.554 43.478 0.00 0.00 0.00 2.24
3443 3795 3.741344 GGCATTACTATACAGCAACCTCG 59.259 47.826 0.00 0.00 0.00 4.63
3506 3858 9.672673 GTCATTACCCTGCAAATATGTATAGAT 57.327 33.333 0.00 0.00 0.00 1.98
3711 4064 4.812091 GGGAACAACAAACACCATAAAACC 59.188 41.667 0.00 0.00 0.00 3.27
3936 4290 9.725019 AGAGTTCAATGATAAAAGTCACATACA 57.275 29.630 0.00 0.00 0.00 2.29
3986 4608 4.392138 GCTATTTGGATAGAATACCGCACC 59.608 45.833 0.00 0.00 37.97 5.01
4189 4811 8.851541 AGTAAAGACCCATTACAAAAACGATA 57.148 30.769 0.00 0.00 36.04 2.92
4298 4921 4.265904 TGATTGGAGAACTCGCAACTAA 57.734 40.909 7.49 0.00 0.00 2.24
4299 4922 3.953712 TGATTGGAGAACTCGCAACTA 57.046 42.857 7.49 0.65 0.00 2.24
4326 4949 5.422214 AGTTACAAACTCTAGTGATGGGG 57.578 43.478 0.00 0.00 37.02 4.96
4361 4988 1.230324 GCTCATATCGAACCTTGCCC 58.770 55.000 0.00 0.00 0.00 5.36
4472 5101 4.857871 TCATCATTACTTAACAGCACGC 57.142 40.909 0.00 0.00 0.00 5.34
4576 5205 4.797912 ATATTTTCCTTCCCTGTCTCCC 57.202 45.455 0.00 0.00 0.00 4.30
4638 5267 6.687958 CGTTTTAAAAAGCCGAGTAAAACTGA 59.312 34.615 1.31 0.00 41.23 3.41
4642 5271 5.889219 ACCGTTTTAAAAAGCCGAGTAAAA 58.111 33.333 1.31 0.00 0.00 1.52
4710 5339 9.765795 AACATTACATACCTCAATAAGAGTAGC 57.234 33.333 0.00 0.00 43.12 3.58
4929 5558 1.278127 ACAGTGGGGACAAGGTAATCG 59.722 52.381 0.00 0.00 46.06 3.34
4957 5587 7.202016 ACGCAAGAAAATTCTCAGAATACAA 57.798 32.000 0.00 0.00 43.62 2.41
5162 5794 8.674263 ACATGAATATCCTAGAAAGAGCAAAG 57.326 34.615 0.00 0.00 0.00 2.77
5430 6149 9.699703 GAAGAGTATTAGGACAGTATTGGATTC 57.300 37.037 0.00 0.00 0.00 2.52
5440 6159 8.943594 ACTATAAGGGAAGAGTATTAGGACAG 57.056 38.462 0.00 0.00 0.00 3.51
5594 6313 5.343249 GTTCATACCATGTTCAGATTTGGC 58.657 41.667 0.00 0.00 32.26 4.52
5725 6449 9.868277 ACATCTACACATCTCTAAAGAAAGAAG 57.132 33.333 0.00 0.00 34.49 2.85
5905 6629 4.999950 TGTTTCAACAACCAACAAGCAAAT 59.000 33.333 0.00 0.00 35.67 2.32
5907 6631 3.995199 TGTTTCAACAACCAACAAGCAA 58.005 36.364 0.00 0.00 35.67 3.91
5908 6632 3.667497 TGTTTCAACAACCAACAAGCA 57.333 38.095 0.00 0.00 35.67 3.91
5917 6641 8.334632 CAGTTTTAATTGGGATGTTTCAACAAC 58.665 33.333 0.00 0.00 43.03 3.32
5937 6661 5.431731 TCACATAGTATCCATCCCCAGTTTT 59.568 40.000 0.00 0.00 0.00 2.43
5942 6666 4.593206 GTCTTCACATAGTATCCATCCCCA 59.407 45.833 0.00 0.00 0.00 4.96
5955 6679 6.710597 AAGGCGTATTCTAGTCTTCACATA 57.289 37.500 0.00 0.00 0.00 2.29
5973 6697 2.472488 GACAACAAAAGATGCAAAGGCG 59.528 45.455 0.00 0.00 45.35 5.52
6170 6898 1.728971 CTCGTCCAAATGAGCACTGTC 59.271 52.381 0.00 0.00 31.96 3.51
6182 6910 7.504924 AATCATCAAGTTTTTACTCGTCCAA 57.495 32.000 0.00 0.00 0.00 3.53
6247 6975 4.097892 GGGAAATTTCTCATTATGTGGCGT 59.902 41.667 17.42 0.00 0.00 5.68
6311 7051 4.574013 GTGGCTGAATGAAGAAGGATACAG 59.426 45.833 0.00 0.00 41.41 2.74
6317 7057 4.279169 TCAAAAGTGGCTGAATGAAGAAGG 59.721 41.667 0.00 0.00 0.00 3.46
6446 7216 2.874086 GCCGTCATCATGATCATTGTCA 59.126 45.455 5.16 0.00 0.00 3.58
6458 7228 0.036858 TTCAATGTCCGCCGTCATCA 60.037 50.000 0.00 0.00 0.00 3.07
6491 7261 4.030216 TCAGCTTCCACCTACATACATCA 58.970 43.478 0.00 0.00 0.00 3.07
6533 7303 3.187227 CGATGTTAAACTGAACAGCTGCT 59.813 43.478 15.27 0.00 42.27 4.24
6534 7304 3.058914 ACGATGTTAAACTGAACAGCTGC 60.059 43.478 15.27 0.00 42.27 5.25
6535 7305 4.457810 CACGATGTTAAACTGAACAGCTG 58.542 43.478 13.48 13.48 42.27 4.24
6536 7306 3.498397 CCACGATGTTAAACTGAACAGCT 59.502 43.478 1.46 0.00 42.27 4.24
6578 7355 6.238130 GCGTTAGATCCTCCTAAAATGTCAAC 60.238 42.308 0.00 0.00 31.19 3.18
6603 7380 0.466922 CAATGCTTCCCAGCCCTAGG 60.467 60.000 0.06 0.06 46.74 3.02
6614 7391 4.458989 TGTTACATTCTCCCACAATGCTTC 59.541 41.667 0.00 0.00 35.02 3.86
6641 7418 3.606777 CGTACGATGTTGTACAAGTCAGG 59.393 47.826 10.44 3.90 43.89 3.86
6658 7435 5.059587 TGTTTAAGTACAGCGAAATCGTACG 59.940 40.000 9.53 9.53 40.32 3.67
6669 7446 3.007614 TGGAGGGAGTGTTTAAGTACAGC 59.992 47.826 0.00 0.00 0.00 4.40
6671 7448 5.280317 GGATTGGAGGGAGTGTTTAAGTACA 60.280 44.000 0.00 0.00 0.00 2.90
6672 7449 5.183969 GGATTGGAGGGAGTGTTTAAGTAC 58.816 45.833 0.00 0.00 0.00 2.73
6674 7451 3.307480 CGGATTGGAGGGAGTGTTTAAGT 60.307 47.826 0.00 0.00 0.00 2.24
6675 7452 3.055385 TCGGATTGGAGGGAGTGTTTAAG 60.055 47.826 0.00 0.00 0.00 1.85
6677 7454 2.542550 TCGGATTGGAGGGAGTGTTTA 58.457 47.619 0.00 0.00 0.00 2.01
6678 7455 1.358152 TCGGATTGGAGGGAGTGTTT 58.642 50.000 0.00 0.00 0.00 2.83
6679 7456 1.358152 TTCGGATTGGAGGGAGTGTT 58.642 50.000 0.00 0.00 0.00 3.32
6680 7457 1.584724 ATTCGGATTGGAGGGAGTGT 58.415 50.000 0.00 0.00 0.00 3.55
6681 7458 2.717639 AATTCGGATTGGAGGGAGTG 57.282 50.000 0.00 0.00 0.00 3.51
6682 7459 5.104109 TCAATTAATTCGGATTGGAGGGAGT 60.104 40.000 0.00 0.00 34.74 3.85
6683 7460 5.239525 GTCAATTAATTCGGATTGGAGGGAG 59.760 44.000 0.00 0.00 34.74 4.30
6685 7462 4.024048 CGTCAATTAATTCGGATTGGAGGG 60.024 45.833 0.00 0.00 34.74 4.30
6686 7463 4.554723 GCGTCAATTAATTCGGATTGGAGG 60.555 45.833 0.00 5.13 34.74 4.30
6687 7464 4.035091 TGCGTCAATTAATTCGGATTGGAG 59.965 41.667 0.00 5.51 34.74 3.86
6688 7465 3.942115 TGCGTCAATTAATTCGGATTGGA 59.058 39.130 0.00 0.00 34.74 3.53
6689 7466 4.201910 ACTGCGTCAATTAATTCGGATTGG 60.202 41.667 0.00 1.11 34.74 3.16
6690 7467 4.908736 ACTGCGTCAATTAATTCGGATTG 58.091 39.130 0.00 3.83 35.18 2.67
6691 7468 4.876107 AGACTGCGTCAATTAATTCGGATT 59.124 37.500 10.27 0.00 34.60 3.01
6692 7469 4.442706 AGACTGCGTCAATTAATTCGGAT 58.557 39.130 10.27 0.69 34.60 4.18
6693 7470 3.857052 AGACTGCGTCAATTAATTCGGA 58.143 40.909 10.27 7.20 34.60 4.55
6694 7471 3.616821 TGAGACTGCGTCAATTAATTCGG 59.383 43.478 10.27 2.65 34.60 4.30
6695 7472 4.840401 TGAGACTGCGTCAATTAATTCG 57.160 40.909 0.00 1.34 34.60 3.34
6696 7473 7.234187 TGTATGAGACTGCGTCAATTAATTC 57.766 36.000 0.00 0.00 34.60 2.17
6697 7474 7.609760 TTGTATGAGACTGCGTCAATTAATT 57.390 32.000 10.52 0.00 34.60 1.40
6698 7475 7.254898 CCATTGTATGAGACTGCGTCAATTAAT 60.255 37.037 10.52 0.00 34.60 1.40
6699 7476 6.037062 CCATTGTATGAGACTGCGTCAATTAA 59.963 38.462 10.52 0.00 34.60 1.40
6700 7477 5.523552 CCATTGTATGAGACTGCGTCAATTA 59.476 40.000 10.52 0.00 34.60 1.40
6701 7478 4.333649 CCATTGTATGAGACTGCGTCAATT 59.666 41.667 10.52 0.00 34.60 2.32
6702 7479 3.873361 CCATTGTATGAGACTGCGTCAAT 59.127 43.478 10.52 6.74 34.60 2.57
6703 7480 3.261580 CCATTGTATGAGACTGCGTCAA 58.738 45.455 10.52 0.55 34.60 3.18
6704 7481 2.892374 CCATTGTATGAGACTGCGTCA 58.108 47.619 10.52 0.00 34.60 4.35
6705 7482 1.594862 GCCATTGTATGAGACTGCGTC 59.405 52.381 1.15 1.15 0.00 5.19
6706 7483 1.066215 TGCCATTGTATGAGACTGCGT 60.066 47.619 0.00 0.00 0.00 5.24
6707 7484 1.655484 TGCCATTGTATGAGACTGCG 58.345 50.000 0.00 0.00 0.00 5.18
6708 7485 4.418392 CTTTTGCCATTGTATGAGACTGC 58.582 43.478 0.00 0.00 0.00 4.40
6709 7486 4.701651 TCCTTTTGCCATTGTATGAGACTG 59.298 41.667 0.00 0.00 0.00 3.51
6710 7487 4.922206 TCCTTTTGCCATTGTATGAGACT 58.078 39.130 0.00 0.00 0.00 3.24
6711 7488 4.702131 ACTCCTTTTGCCATTGTATGAGAC 59.298 41.667 0.00 0.00 0.00 3.36
6712 7489 4.922206 ACTCCTTTTGCCATTGTATGAGA 58.078 39.130 0.00 0.00 0.00 3.27
6713 7490 5.066505 GGTACTCCTTTTGCCATTGTATGAG 59.933 44.000 0.00 0.00 0.00 2.90
6714 7491 4.947388 GGTACTCCTTTTGCCATTGTATGA 59.053 41.667 0.00 0.00 0.00 2.15
6715 7492 4.704540 TGGTACTCCTTTTGCCATTGTATG 59.295 41.667 0.00 0.00 34.23 2.39
6716 7493 4.929479 TGGTACTCCTTTTGCCATTGTAT 58.071 39.130 0.00 0.00 34.23 2.29
6717 7494 4.374689 TGGTACTCCTTTTGCCATTGTA 57.625 40.909 0.00 0.00 34.23 2.41
6718 7495 3.237268 TGGTACTCCTTTTGCCATTGT 57.763 42.857 0.00 0.00 34.23 2.71
6719 7496 4.019174 AGATGGTACTCCTTTTGCCATTG 58.981 43.478 0.00 0.00 39.74 2.82
6720 7497 4.322057 AGATGGTACTCCTTTTGCCATT 57.678 40.909 0.00 0.00 39.74 3.16
6721 7498 4.322057 AAGATGGTACTCCTTTTGCCAT 57.678 40.909 0.00 0.00 42.04 4.40
6722 7499 3.806949 AAGATGGTACTCCTTTTGCCA 57.193 42.857 0.00 0.00 34.23 4.92
6723 7500 4.522789 TGAAAAGATGGTACTCCTTTTGCC 59.477 41.667 18.09 10.03 39.33 4.52
6724 7501 5.241728 ACTGAAAAGATGGTACTCCTTTTGC 59.758 40.000 18.09 12.71 39.33 3.68
6725 7502 6.884280 ACTGAAAAGATGGTACTCCTTTTG 57.116 37.500 18.09 11.18 39.33 2.44
6726 7503 6.649557 CGTACTGAAAAGATGGTACTCCTTTT 59.350 38.462 15.14 15.14 40.83 2.27
6727 7504 6.164176 CGTACTGAAAAGATGGTACTCCTTT 58.836 40.000 0.00 0.00 34.26 3.11
6728 7505 5.245526 ACGTACTGAAAAGATGGTACTCCTT 59.754 40.000 0.00 0.00 34.26 3.36
6729 7506 4.771054 ACGTACTGAAAAGATGGTACTCCT 59.229 41.667 0.00 0.00 34.26 3.69
6730 7507 5.069501 ACGTACTGAAAAGATGGTACTCC 57.930 43.478 0.00 0.00 34.26 3.85
6731 7508 6.850555 AGTACGTACTGAAAAGATGGTACTC 58.149 40.000 26.87 0.00 35.68 2.59
6732 7509 6.830873 AGTACGTACTGAAAAGATGGTACT 57.169 37.500 26.87 0.00 35.72 2.73
6733 7510 7.880059 AAAGTACGTACTGAAAAGATGGTAC 57.120 36.000 28.00 0.00 36.50 3.34
6783 7564 6.903534 TCCAAATTTAAAAGGCCACCCATATA 59.096 34.615 5.01 0.00 0.00 0.86
6784 7565 5.728741 TCCAAATTTAAAAGGCCACCCATAT 59.271 36.000 5.01 0.00 0.00 1.78
6785 7566 5.094387 TCCAAATTTAAAAGGCCACCCATA 58.906 37.500 5.01 0.00 0.00 2.74
6793 7574 6.912051 CAGTTGCTTTTCCAAATTTAAAAGGC 59.088 34.615 20.17 19.07 41.10 4.35
6800 7588 9.558396 TTATCAATCAGTTGCTTTTCCAAATTT 57.442 25.926 0.00 0.00 35.26 1.82
6854 7642 0.825425 TCTCCCTGCCTCGATGCTAG 60.825 60.000 13.93 9.14 0.00 3.42
6855 7643 0.825425 CTCTCCCTGCCTCGATGCTA 60.825 60.000 13.93 0.09 0.00 3.49
6856 7644 2.042537 TCTCCCTGCCTCGATGCT 60.043 61.111 13.93 0.00 0.00 3.79
6885 7673 1.339610 CTCGGTGCTTCTCTCCCTATG 59.660 57.143 0.00 0.00 0.00 2.23
6889 7677 1.216710 CACTCGGTGCTTCTCTCCC 59.783 63.158 0.00 0.00 0.00 4.30
6959 7757 1.370414 CGTTTTGGCTGCTTGTCGG 60.370 57.895 0.00 0.00 0.00 4.79
6997 7795 1.418373 GATGCAAACAAAGGCGTTCC 58.582 50.000 0.00 0.00 0.00 3.62
7029 7827 1.584483 GATTGATTGGCTGTGCGCG 60.584 57.895 0.00 0.00 40.44 6.86
7030 7828 1.226773 GGATTGATTGGCTGTGCGC 60.227 57.895 0.00 0.00 38.13 6.09
7075 7877 1.445582 GCCGTCGAATCGAACCTGT 60.446 57.895 7.01 0.00 37.72 4.00
7102 7904 3.738429 CTGTGCGATCCCCATGCGA 62.738 63.158 0.00 0.00 0.00 5.10
7320 8137 4.778415 CGATATCGCCGGCGGGAG 62.778 72.222 44.95 27.93 40.25 4.30
7334 8151 3.470888 CAAGTCCCTCCCGGCGAT 61.471 66.667 9.30 0.00 0.00 4.58
7438 8255 2.973899 CCGCAGTAGCTCACCACT 59.026 61.111 0.00 0.00 39.10 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.