Multiple sequence alignment - TraesCS2B01G309100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G309100 chr2B 100.000 2357 0 0 1 2357 442311708 442309352 0.000000e+00 4353
1 TraesCS2B01G309100 chr2D 95.008 1182 46 9 496 1674 372701257 372700086 0.000000e+00 1844
2 TraesCS2B01G309100 chr2D 90.240 625 28 16 1743 2355 372698174 372697571 0.000000e+00 785
3 TraesCS2B01G309100 chr2D 92.941 340 13 7 5 336 372701591 372701255 3.520000e-133 484
4 TraesCS2B01G309100 chr2D 85.714 140 16 2 2139 2278 551888626 551888761 6.790000e-31 145
5 TraesCS2B01G309100 chr2A 93.669 1232 60 13 496 1719 504077169 504075948 0.000000e+00 1827
6 TraesCS2B01G309100 chr2A 83.784 592 59 23 1752 2323 504075817 504075243 5.770000e-146 527
7 TraesCS2B01G309100 chr2A 93.175 337 17 4 5 336 504077502 504077167 7.570000e-135 490
8 TraesCS2B01G309100 chr2A 95.833 168 6 1 331 497 683721492 683721325 1.070000e-68 270
9 TraesCS2B01G309100 chr2A 86.429 140 15 2 2139 2278 692695421 692695556 1.460000e-32 150
10 TraesCS2B01G309100 chr2A 82.011 189 23 7 2090 2277 701231864 701231686 1.460000e-32 150
11 TraesCS2B01G309100 chr6B 97.006 167 5 0 331 497 400633555 400633721 4.960000e-72 281
12 TraesCS2B01G309100 chr6B 96.364 165 5 1 334 497 226362644 226362480 1.070000e-68 270
13 TraesCS2B01G309100 chrUn 96.386 166 5 1 333 497 74119616 74119451 2.980000e-69 272
14 TraesCS2B01G309100 chr6A 95.833 168 7 0 334 501 98747562 98747395 2.980000e-69 272
15 TraesCS2B01G309100 chr4D 94.828 174 7 2 334 505 93079368 93079195 1.070000e-68 270
16 TraesCS2B01G309100 chr3B 94.798 173 8 1 330 501 775481564 775481736 3.860000e-68 268
17 TraesCS2B01G309100 chr3B 94.286 175 9 1 330 503 547333206 547333032 1.390000e-67 267
18 TraesCS2B01G309100 chr1A 93.333 180 12 0 333 512 49976742 49976921 1.390000e-67 267
19 TraesCS2B01G309100 chr1A 86.429 140 13 4 2139 2277 77079500 77079634 5.250000e-32 148
20 TraesCS2B01G309100 chr1A 81.347 193 24 7 2087 2277 385654651 385654833 1.890000e-31 147
21 TraesCS2B01G309100 chr7A 81.122 196 25 6 2084 2277 47901489 47901674 1.890000e-31 147
22 TraesCS2B01G309100 chr7A 81.383 188 24 6 2091 2277 80533107 80532930 2.440000e-30 143
23 TraesCS2B01G309100 chr5A 81.579 190 24 5 2087 2275 23935878 23936057 1.890000e-31 147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G309100 chr2B 442309352 442311708 2356 True 4353.000000 4353 100.000000 1 2357 1 chr2B.!!$R1 2356
1 TraesCS2B01G309100 chr2D 372697571 372701591 4020 True 1037.666667 1844 92.729667 5 2355 3 chr2D.!!$R1 2350
2 TraesCS2B01G309100 chr2A 504075243 504077502 2259 True 948.000000 1827 90.209333 5 2323 3 chr2A.!!$R3 2318

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
184 192 0.041312 CCAAGTTCGGCGACTGTTTG 60.041 55.0 10.16 11.56 0.0 2.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1861 3723 0.106918 TGTGTGGACCCAACAGTTCC 60.107 55.0 0.0 0.0 0.0 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 5.865085 TCATACATACCTATTTCTGTGGGC 58.135 41.667 0.00 0.00 0.00 5.36
184 192 0.041312 CCAAGTTCGGCGACTGTTTG 60.041 55.000 10.16 11.56 0.00 2.93
275 284 4.029809 GTGGCGCACCCCCTTACT 62.030 66.667 10.83 0.00 33.59 2.24
307 316 5.121811 GTCACGAGTACCTGAGGATAGTTA 58.878 45.833 4.99 0.00 0.00 2.24
308 317 5.764192 GTCACGAGTACCTGAGGATAGTTAT 59.236 44.000 4.99 0.00 0.00 1.89
339 349 8.833493 ACTATTTATACCATGCGTTTTACTTCC 58.167 33.333 0.00 0.00 0.00 3.46
340 350 7.875327 ATTTATACCATGCGTTTTACTTCCT 57.125 32.000 0.00 0.00 0.00 3.36
341 351 6.913873 TTATACCATGCGTTTTACTTCCTC 57.086 37.500 0.00 0.00 0.00 3.71
342 352 2.433436 ACCATGCGTTTTACTTCCTCC 58.567 47.619 0.00 0.00 0.00 4.30
343 353 1.396996 CCATGCGTTTTACTTCCTCCG 59.603 52.381 0.00 0.00 0.00 4.63
344 354 2.073816 CATGCGTTTTACTTCCTCCGT 58.926 47.619 0.00 0.00 0.00 4.69
345 355 2.243602 TGCGTTTTACTTCCTCCGTT 57.756 45.000 0.00 0.00 0.00 4.44
346 356 2.137523 TGCGTTTTACTTCCTCCGTTC 58.862 47.619 0.00 0.00 0.00 3.95
347 357 1.462283 GCGTTTTACTTCCTCCGTTCC 59.538 52.381 0.00 0.00 0.00 3.62
348 358 2.869237 GCGTTTTACTTCCTCCGTTCCT 60.869 50.000 0.00 0.00 0.00 3.36
349 359 3.614870 GCGTTTTACTTCCTCCGTTCCTA 60.615 47.826 0.00 0.00 0.00 2.94
350 360 4.559153 CGTTTTACTTCCTCCGTTCCTAA 58.441 43.478 0.00 0.00 0.00 2.69
351 361 4.990426 CGTTTTACTTCCTCCGTTCCTAAA 59.010 41.667 0.00 0.00 0.00 1.85
352 362 5.640783 CGTTTTACTTCCTCCGTTCCTAAAT 59.359 40.000 0.00 0.00 0.00 1.40
353 363 6.813152 CGTTTTACTTCCTCCGTTCCTAAATA 59.187 38.462 0.00 0.00 0.00 1.40
354 364 7.493645 CGTTTTACTTCCTCCGTTCCTAAATAT 59.506 37.037 0.00 0.00 0.00 1.28
355 365 9.170734 GTTTTACTTCCTCCGTTCCTAAATATT 57.829 33.333 0.00 0.00 0.00 1.28
356 366 9.743581 TTTTACTTCCTCCGTTCCTAAATATTT 57.256 29.630 5.89 5.89 0.00 1.40
357 367 8.726870 TTACTTCCTCCGTTCCTAAATATTTG 57.273 34.615 11.05 1.40 0.00 2.32
358 368 6.718294 ACTTCCTCCGTTCCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
359 369 6.822170 ACTTCCTCCGTTCCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
360 370 6.555463 TCCTCCGTTCCTAAATATTTGTCT 57.445 37.500 11.05 0.00 0.00 3.41
361 371 6.954232 TCCTCCGTTCCTAAATATTTGTCTT 58.046 36.000 11.05 0.00 0.00 3.01
362 372 7.399634 TCCTCCGTTCCTAAATATTTGTCTTT 58.600 34.615 11.05 0.00 0.00 2.52
363 373 7.551617 TCCTCCGTTCCTAAATATTTGTCTTTC 59.448 37.037 11.05 0.00 0.00 2.62
364 374 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
365 375 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
366 376 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
367 377 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
391 401 9.737427 AGATATTTCAACAAGAGACTACATACG 57.263 33.333 0.00 0.00 0.00 3.06
392 402 8.873215 ATATTTCAACAAGAGACTACATACGG 57.127 34.615 0.00 0.00 0.00 4.02
393 403 5.970317 TTCAACAAGAGACTACATACGGA 57.030 39.130 0.00 0.00 0.00 4.69
394 404 5.562506 TCAACAAGAGACTACATACGGAG 57.437 43.478 0.00 0.00 0.00 4.63
395 405 4.106197 CAACAAGAGACTACATACGGAGC 58.894 47.826 0.00 0.00 0.00 4.70
396 406 3.353557 ACAAGAGACTACATACGGAGCA 58.646 45.455 0.00 0.00 0.00 4.26
397 407 3.762288 ACAAGAGACTACATACGGAGCAA 59.238 43.478 0.00 0.00 0.00 3.91
398 408 4.219944 ACAAGAGACTACATACGGAGCAAA 59.780 41.667 0.00 0.00 0.00 3.68
399 409 5.168569 CAAGAGACTACATACGGAGCAAAA 58.831 41.667 0.00 0.00 0.00 2.44
400 410 5.599999 AGAGACTACATACGGAGCAAAAT 57.400 39.130 0.00 0.00 0.00 1.82
401 411 5.352284 AGAGACTACATACGGAGCAAAATG 58.648 41.667 0.00 0.00 0.00 2.32
402 412 5.127194 AGAGACTACATACGGAGCAAAATGA 59.873 40.000 0.00 0.00 0.00 2.57
403 413 5.352284 AGACTACATACGGAGCAAAATGAG 58.648 41.667 0.00 0.00 0.00 2.90
404 414 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
405 415 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
406 416 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
407 417 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
408 418 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
409 419 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
410 420 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
411 421 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
412 422 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
413 423 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
414 424 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
451 461 3.242518 CATACATCCGTATGTGGTAGCG 58.757 50.000 3.56 0.00 46.70 4.26
452 462 1.395635 ACATCCGTATGTGGTAGCGA 58.604 50.000 0.00 0.00 44.79 4.93
453 463 1.961394 ACATCCGTATGTGGTAGCGAT 59.039 47.619 0.00 0.00 44.79 4.58
454 464 2.364324 ACATCCGTATGTGGTAGCGATT 59.636 45.455 0.00 0.00 44.79 3.34
455 465 3.181469 ACATCCGTATGTGGTAGCGATTT 60.181 43.478 0.00 0.00 44.79 2.17
456 466 2.816689 TCCGTATGTGGTAGCGATTTG 58.183 47.619 0.00 0.00 0.00 2.32
457 467 2.427812 TCCGTATGTGGTAGCGATTTGA 59.572 45.455 0.00 0.00 0.00 2.69
458 468 3.119065 TCCGTATGTGGTAGCGATTTGAA 60.119 43.478 0.00 0.00 0.00 2.69
459 469 3.619483 CCGTATGTGGTAGCGATTTGAAA 59.381 43.478 0.00 0.00 0.00 2.69
460 470 4.272504 CCGTATGTGGTAGCGATTTGAAAT 59.727 41.667 0.00 0.00 0.00 2.17
461 471 5.197549 CGTATGTGGTAGCGATTTGAAATG 58.802 41.667 0.00 0.00 0.00 2.32
462 472 3.485947 TGTGGTAGCGATTTGAAATGC 57.514 42.857 0.00 0.00 0.00 3.56
463 473 2.163412 TGTGGTAGCGATTTGAAATGCC 59.837 45.455 0.00 0.00 0.00 4.40
464 474 2.423538 GTGGTAGCGATTTGAAATGCCT 59.576 45.455 0.00 0.00 0.00 4.75
465 475 3.625764 GTGGTAGCGATTTGAAATGCCTA 59.374 43.478 0.00 0.00 0.00 3.93
466 476 3.876914 TGGTAGCGATTTGAAATGCCTAG 59.123 43.478 0.00 0.00 0.00 3.02
467 477 4.127171 GGTAGCGATTTGAAATGCCTAGA 58.873 43.478 0.00 0.00 0.00 2.43
468 478 4.574828 GGTAGCGATTTGAAATGCCTAGAA 59.425 41.667 0.00 0.00 0.00 2.10
469 479 5.065988 GGTAGCGATTTGAAATGCCTAGAAA 59.934 40.000 0.00 0.00 0.00 2.52
470 480 5.240713 AGCGATTTGAAATGCCTAGAAAG 57.759 39.130 0.00 0.00 0.00 2.62
471 481 4.943705 AGCGATTTGAAATGCCTAGAAAGA 59.056 37.500 0.00 0.00 0.00 2.52
472 482 5.030936 GCGATTTGAAATGCCTAGAAAGAC 58.969 41.667 0.00 0.00 0.00 3.01
473 483 5.391950 GCGATTTGAAATGCCTAGAAAGACA 60.392 40.000 0.00 0.00 0.00 3.41
474 484 6.611381 CGATTTGAAATGCCTAGAAAGACAA 58.389 36.000 0.00 0.00 0.00 3.18
475 485 7.083858 CGATTTGAAATGCCTAGAAAGACAAA 58.916 34.615 0.00 0.00 0.00 2.83
476 486 7.756722 CGATTTGAAATGCCTAGAAAGACAAAT 59.243 33.333 0.00 0.00 37.86 2.32
484 494 9.920946 AATGCCTAGAAAGACAAATATTTAGGA 57.079 29.630 11.79 1.09 0.00 2.94
485 495 9.920946 ATGCCTAGAAAGACAAATATTTAGGAA 57.079 29.630 11.79 3.74 0.00 3.36
486 496 9.174166 TGCCTAGAAAGACAAATATTTAGGAAC 57.826 33.333 11.79 0.00 0.00 3.62
487 497 8.336080 GCCTAGAAAGACAAATATTTAGGAACG 58.664 37.037 11.79 0.00 0.00 3.95
488 498 8.827677 CCTAGAAAGACAAATATTTAGGAACGG 58.172 37.037 0.00 0.00 0.00 4.44
489 499 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
490 500 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
491 501 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
492 502 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
493 503 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
494 504 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
495 505 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
496 506 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
497 507 6.416631 AATATTTAGGAACGGAGGGAGTAC 57.583 41.667 0.00 0.00 0.00 2.73
505 515 3.397849 ACGGAGGGAGTACAAGTTTTC 57.602 47.619 0.00 0.00 0.00 2.29
515 525 3.739300 AGTACAAGTTTTCGACATGACGG 59.261 43.478 17.11 2.36 31.59 4.79
518 528 0.599204 AGTTTTCGACATGACGGCGT 60.599 50.000 14.65 14.65 0.00 5.68
539 549 4.451096 CGTGTTTTACACTTATCTGCCTGT 59.549 41.667 8.18 0.00 46.46 4.00
561 571 8.454106 CCTGTGAAAGGTAAATCATTTAGTGAG 58.546 37.037 0.00 0.00 41.74 3.51
567 577 8.494016 AAGGTAAATCATTTAGTGAGTGTAGC 57.506 34.615 0.00 0.00 40.92 3.58
569 579 7.766278 AGGTAAATCATTTAGTGAGTGTAGCTG 59.234 37.037 0.00 0.00 40.92 4.24
570 580 7.549488 GGTAAATCATTTAGTGAGTGTAGCTGT 59.451 37.037 0.00 0.00 40.92 4.40
571 581 7.986085 AAATCATTTAGTGAGTGTAGCTGTT 57.014 32.000 0.00 0.00 40.92 3.16
572 582 7.986085 AATCATTTAGTGAGTGTAGCTGTTT 57.014 32.000 0.00 0.00 40.92 2.83
702 713 4.450976 TGTGTAGTTTCAGACACTGCAAT 58.549 39.130 8.87 0.00 45.08 3.56
709 720 9.319143 GTAGTTTCAGACACTGCAATATAGATT 57.681 33.333 0.00 0.00 0.00 2.40
795 806 5.241728 GCTTTACCAATCCTGTTTCACTTCT 59.758 40.000 0.00 0.00 0.00 2.85
796 807 6.568653 GCTTTACCAATCCTGTTTCACTTCTC 60.569 42.308 0.00 0.00 0.00 2.87
807 818 4.273480 TGTTTCACTTCTCACTTTAGCTGC 59.727 41.667 0.00 0.00 0.00 5.25
832 843 8.880750 GCGACTTCTTGTATTCCTAAAATAGTT 58.119 33.333 0.00 0.00 0.00 2.24
862 873 8.169268 GCTGTGAGTGTAGAAACATGTAAATAC 58.831 37.037 0.00 3.12 38.08 1.89
913 924 6.572519 TGAAATTAAGCTTCAGTTTGTGCTT 58.427 32.000 0.00 0.00 45.94 3.91
914 925 6.476380 TGAAATTAAGCTTCAGTTTGTGCTTG 59.524 34.615 0.00 0.00 44.21 4.01
916 927 3.874392 AAGCTTCAGTTTGTGCTTGTT 57.126 38.095 0.00 0.00 43.09 2.83
917 928 3.874392 AGCTTCAGTTTGTGCTTGTTT 57.126 38.095 0.00 0.00 30.96 2.83
960 971 6.525629 ACAACAGCTCTGTATTAGAAGTGTT 58.474 36.000 2.62 0.00 44.13 3.32
1046 1057 7.172703 TGACTTTTTCTTGCTAACCTAGTAAGC 59.827 37.037 6.64 2.19 44.80 3.09
1056 1067 6.035217 GCTAACCTAGTAAGCTATAATCCGC 58.965 44.000 0.00 0.00 33.40 5.54
1362 1373 0.610687 CACCAGGGGAGTGAAGAGAC 59.389 60.000 0.00 0.00 37.42 3.36
1403 1414 0.332632 TGCTTTATGCTGGGCTCCTT 59.667 50.000 0.00 0.00 43.37 3.36
1404 1415 1.272648 TGCTTTATGCTGGGCTCCTTT 60.273 47.619 0.00 0.00 43.37 3.11
1405 1416 1.827344 GCTTTATGCTGGGCTCCTTTT 59.173 47.619 0.00 0.00 38.95 2.27
1546 1558 4.576330 ACCTTAGCCTAAATTGAGCTGT 57.424 40.909 0.00 0.00 37.45 4.40
1548 1560 6.062258 ACCTTAGCCTAAATTGAGCTGTTA 57.938 37.500 0.00 0.00 37.45 2.41
1549 1561 6.663734 ACCTTAGCCTAAATTGAGCTGTTAT 58.336 36.000 0.00 0.00 37.45 1.89
1663 1678 1.372872 GCATTGTGGTTTGGCGTCC 60.373 57.895 0.00 0.00 0.00 4.79
1667 1682 2.112297 GTGGTTTGGCGTCCCTCA 59.888 61.111 0.00 0.00 0.00 3.86
1679 1694 2.289506 GCGTCCCTCAGTCCTTTTAAGT 60.290 50.000 0.00 0.00 0.00 2.24
1680 1695 3.586892 CGTCCCTCAGTCCTTTTAAGTC 58.413 50.000 0.00 0.00 0.00 3.01
1681 1696 3.586892 GTCCCTCAGTCCTTTTAAGTCG 58.413 50.000 0.00 0.00 0.00 4.18
1709 3292 4.397417 AGTTTCATGCTGCCAAAGATACTC 59.603 41.667 0.00 0.00 0.00 2.59
1713 3296 1.565759 TGCTGCCAAAGATACTCCCAT 59.434 47.619 0.00 0.00 0.00 4.00
1717 3300 2.846206 TGCCAAAGATACTCCCATCAGT 59.154 45.455 0.00 0.00 0.00 3.41
1719 3302 3.745797 GCCAAAGATACTCCCATCAGTCC 60.746 52.174 0.00 0.00 0.00 3.85
1723 3306 3.843422 AGATACTCCCATCAGTCCTCTG 58.157 50.000 0.00 0.00 42.54 3.35
1724 3307 1.781786 TACTCCCATCAGTCCTCTGC 58.218 55.000 0.00 0.00 41.10 4.26
1725 3308 0.980231 ACTCCCATCAGTCCTCTGCC 60.980 60.000 0.00 0.00 41.10 4.85
1726 3309 0.979709 CTCCCATCAGTCCTCTGCCA 60.980 60.000 0.00 0.00 41.10 4.92
1745 3603 3.672511 GCCAGAGCATGTTGATCACTTTG 60.673 47.826 0.00 0.00 34.77 2.77
1750 3608 6.965500 CAGAGCATGTTGATCACTTTGTTATC 59.035 38.462 0.00 0.00 34.77 1.75
1778 3636 2.353704 GCAAAACAGGTAATCCCTTGGC 60.354 50.000 0.00 0.00 42.73 4.52
1817 3675 6.588373 GTCCTCTCAAGTTATGAAGTTCTCAC 59.412 42.308 4.17 0.00 37.67 3.51
1845 3707 0.169672 CTCCATTGCGCCTCAAACTG 59.830 55.000 4.18 0.00 38.34 3.16
1849 3711 0.598065 ATTGCGCCTCAAACTGGAAC 59.402 50.000 4.18 0.00 38.34 3.62
1861 3723 4.761739 TCAAACTGGAACCATGAGCTTTAG 59.238 41.667 0.00 0.00 0.00 1.85
1870 3732 4.074970 ACCATGAGCTTTAGGAACTGTTG 58.925 43.478 0.00 0.00 41.52 3.33
1941 3810 1.541233 CGTCTTTGCTGAAGTGGACCT 60.541 52.381 0.00 0.00 36.70 3.85
1942 3811 2.288825 CGTCTTTGCTGAAGTGGACCTA 60.289 50.000 0.00 0.00 36.70 3.08
1943 3812 3.330267 GTCTTTGCTGAAGTGGACCTAG 58.670 50.000 0.00 0.00 36.70 3.02
1995 3866 6.830324 TGATGATTGGCTCTAATTAGCTTTGT 59.170 34.615 7.67 0.00 42.37 2.83
1996 3867 7.992608 TGATGATTGGCTCTAATTAGCTTTGTA 59.007 33.333 7.67 0.00 42.37 2.41
2019 3890 7.998383 TGTATACATGGACTAAAGGCAATGATT 59.002 33.333 7.22 0.00 0.00 2.57
2020 3891 7.902920 ATACATGGACTAAAGGCAATGATTT 57.097 32.000 7.22 0.00 0.00 2.17
2041 3912 8.471609 TGATTTTCAACTCATACCGTATACAGA 58.528 33.333 3.32 0.00 0.00 3.41
2105 3981 5.728741 AGATCAGGTCTCCTTTGGTTTAGAT 59.271 40.000 0.00 0.00 28.45 1.98
2111 3987 6.887002 AGGTCTCCTTTGGTTTAGATGAATTC 59.113 38.462 0.00 0.00 0.00 2.17
2134 4011 2.988010 TGGAATCCAGATCGGTCTTG 57.012 50.000 0.00 0.00 35.57 3.02
2297 4178 6.582636 TCCTACCAAATGTCAGATGATACAC 58.417 40.000 0.00 0.00 0.00 2.90
2314 4195 8.645814 ATGATACACGGAAATGGTACTATAGA 57.354 34.615 6.78 0.00 0.00 1.98
2323 4204 1.254954 GGTACTATAGACCGGCAGGG 58.745 60.000 8.08 0.00 43.47 4.45
2355 4243 7.160726 TGGTTAACACCTTAACTACATACACC 58.839 38.462 8.10 0.00 44.61 4.16
2356 4244 7.160726 GGTTAACACCTTAACTACATACACCA 58.839 38.462 8.10 0.00 41.10 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.372659 CCCACAGAAATAGGTATGTATGATGC 59.627 42.308 0.00 0.00 0.00 3.91
1 2 6.372659 GCCCACAGAAATAGGTATGTATGATG 59.627 42.308 0.00 0.00 0.00 3.07
2 3 6.044287 TGCCCACAGAAATAGGTATGTATGAT 59.956 38.462 0.00 0.00 0.00 2.45
3 4 5.368230 TGCCCACAGAAATAGGTATGTATGA 59.632 40.000 0.00 0.00 0.00 2.15
4 5 5.620206 TGCCCACAGAAATAGGTATGTATG 58.380 41.667 0.00 0.00 0.00 2.39
5 6 5.904984 TGCCCACAGAAATAGGTATGTAT 57.095 39.130 0.00 0.00 0.00 2.29
184 192 6.727824 TTAAAATTCACTACTCAGAGCAGC 57.272 37.500 0.00 0.00 0.00 5.25
241 250 4.084797 GCGCCACAAATTAAACAACGAAAT 60.085 37.500 0.00 0.00 0.00 2.17
275 284 1.539496 GGTACTCGTGACACAAGCCAA 60.539 52.381 6.37 0.00 0.00 4.52
316 326 7.012989 GGAGGAAGTAAAACGCATGGTATAAAT 59.987 37.037 0.00 0.00 0.00 1.40
328 338 3.036075 AGGAACGGAGGAAGTAAAACG 57.964 47.619 0.00 0.00 0.00 3.60
336 346 6.954232 AGACAAATATTTAGGAACGGAGGAA 58.046 36.000 0.00 0.00 0.00 3.36
337 347 6.555463 AGACAAATATTTAGGAACGGAGGA 57.445 37.500 0.00 0.00 0.00 3.71
338 348 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
339 349 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
340 350 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
341 351 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
365 375 9.737427 CGTATGTAGTCTCTTGTTGAAATATCT 57.263 33.333 0.00 0.00 0.00 1.98
366 376 8.969267 CCGTATGTAGTCTCTTGTTGAAATATC 58.031 37.037 0.00 0.00 0.00 1.63
367 377 8.692710 TCCGTATGTAGTCTCTTGTTGAAATAT 58.307 33.333 0.00 0.00 0.00 1.28
368 378 8.058667 TCCGTATGTAGTCTCTTGTTGAAATA 57.941 34.615 0.00 0.00 0.00 1.40
369 379 6.931838 TCCGTATGTAGTCTCTTGTTGAAAT 58.068 36.000 0.00 0.00 0.00 2.17
370 380 6.335471 TCCGTATGTAGTCTCTTGTTGAAA 57.665 37.500 0.00 0.00 0.00 2.69
371 381 5.621555 GCTCCGTATGTAGTCTCTTGTTGAA 60.622 44.000 0.00 0.00 0.00 2.69
372 382 4.142447 GCTCCGTATGTAGTCTCTTGTTGA 60.142 45.833 0.00 0.00 0.00 3.18
373 383 4.106197 GCTCCGTATGTAGTCTCTTGTTG 58.894 47.826 0.00 0.00 0.00 3.33
374 384 3.762288 TGCTCCGTATGTAGTCTCTTGTT 59.238 43.478 0.00 0.00 0.00 2.83
375 385 3.353557 TGCTCCGTATGTAGTCTCTTGT 58.646 45.455 0.00 0.00 0.00 3.16
376 386 4.371855 TTGCTCCGTATGTAGTCTCTTG 57.628 45.455 0.00 0.00 0.00 3.02
377 387 5.401531 TTTTGCTCCGTATGTAGTCTCTT 57.598 39.130 0.00 0.00 0.00 2.85
378 388 5.127194 TCATTTTGCTCCGTATGTAGTCTCT 59.873 40.000 0.00 0.00 0.00 3.10
379 389 5.348986 TCATTTTGCTCCGTATGTAGTCTC 58.651 41.667 0.00 0.00 0.00 3.36
380 390 5.105310 ACTCATTTTGCTCCGTATGTAGTCT 60.105 40.000 0.00 0.00 0.00 3.24
381 391 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
382 392 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
383 393 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
384 394 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
385 395 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
386 396 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
387 397 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
388 398 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
389 399 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
390 400 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
391 401 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
392 402 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
431 441 3.151554 TCGCTACCACATACGGATGTAT 58.848 45.455 14.23 7.46 44.82 2.29
432 442 2.574450 TCGCTACCACATACGGATGTA 58.426 47.619 14.23 0.00 44.82 2.29
434 444 2.724977 ATCGCTACCACATACGGATG 57.275 50.000 5.94 5.94 39.16 3.51
435 445 3.069016 TCAAATCGCTACCACATACGGAT 59.931 43.478 0.00 0.00 0.00 4.18
436 446 2.427812 TCAAATCGCTACCACATACGGA 59.572 45.455 0.00 0.00 0.00 4.69
437 447 2.816689 TCAAATCGCTACCACATACGG 58.183 47.619 0.00 0.00 0.00 4.02
438 448 4.850859 TTTCAAATCGCTACCACATACG 57.149 40.909 0.00 0.00 0.00 3.06
439 449 4.970003 GCATTTCAAATCGCTACCACATAC 59.030 41.667 0.00 0.00 0.00 2.39
440 450 4.036262 GGCATTTCAAATCGCTACCACATA 59.964 41.667 5.04 0.00 0.00 2.29
441 451 3.181487 GGCATTTCAAATCGCTACCACAT 60.181 43.478 5.04 0.00 0.00 3.21
442 452 2.163412 GGCATTTCAAATCGCTACCACA 59.837 45.455 5.04 0.00 0.00 4.17
443 453 2.423538 AGGCATTTCAAATCGCTACCAC 59.576 45.455 5.04 0.00 0.00 4.16
444 454 2.722094 AGGCATTTCAAATCGCTACCA 58.278 42.857 5.04 0.00 0.00 3.25
445 455 4.127171 TCTAGGCATTTCAAATCGCTACC 58.873 43.478 5.04 0.00 0.00 3.18
446 456 5.734855 TTCTAGGCATTTCAAATCGCTAC 57.265 39.130 5.04 0.00 0.00 3.58
447 457 6.037172 GTCTTTCTAGGCATTTCAAATCGCTA 59.963 38.462 5.04 0.00 0.00 4.26
448 458 4.943705 TCTTTCTAGGCATTTCAAATCGCT 59.056 37.500 5.04 0.00 0.00 4.93
449 459 5.030936 GTCTTTCTAGGCATTTCAAATCGC 58.969 41.667 0.00 0.00 0.00 4.58
450 460 6.182039 TGTCTTTCTAGGCATTTCAAATCG 57.818 37.500 0.00 0.00 29.10 3.34
451 461 8.992835 ATTTGTCTTTCTAGGCATTTCAAATC 57.007 30.769 0.00 0.00 35.56 2.17
458 468 9.920946 TCCTAAATATTTGTCTTTCTAGGCATT 57.079 29.630 11.05 0.00 35.56 3.56
459 469 9.920946 TTCCTAAATATTTGTCTTTCTAGGCAT 57.079 29.630 11.05 0.00 35.56 4.40
460 470 9.174166 GTTCCTAAATATTTGTCTTTCTAGGCA 57.826 33.333 11.05 0.00 33.22 4.75
461 471 8.336080 CGTTCCTAAATATTTGTCTTTCTAGGC 58.664 37.037 11.05 0.00 0.00 3.93
462 472 8.827677 CCGTTCCTAAATATTTGTCTTTCTAGG 58.172 37.037 11.05 6.95 0.00 3.02
463 473 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
464 474 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
465 475 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
466 476 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
467 477 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
468 478 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
469 479 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
470 480 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
471 481 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
472 482 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
473 483 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
474 484 5.901276 TGTACTCCCTCCGTTCCTAAATATT 59.099 40.000 0.00 0.00 0.00 1.28
475 485 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
476 486 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
477 487 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
478 488 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
479 489 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
480 490 2.042162 ACTTGTACTCCCTCCGTTCCTA 59.958 50.000 0.00 0.00 0.00 2.94
481 491 1.203149 ACTTGTACTCCCTCCGTTCCT 60.203 52.381 0.00 0.00 0.00 3.36
482 492 1.264295 ACTTGTACTCCCTCCGTTCC 58.736 55.000 0.00 0.00 0.00 3.62
483 493 3.397849 AAACTTGTACTCCCTCCGTTC 57.602 47.619 0.00 0.00 0.00 3.95
484 494 3.736720 GAAAACTTGTACTCCCTCCGTT 58.263 45.455 0.00 0.00 0.00 4.44
485 495 2.288640 CGAAAACTTGTACTCCCTCCGT 60.289 50.000 0.00 0.00 0.00 4.69
486 496 2.029649 TCGAAAACTTGTACTCCCTCCG 60.030 50.000 0.00 0.00 0.00 4.63
487 497 3.243975 TGTCGAAAACTTGTACTCCCTCC 60.244 47.826 0.00 0.00 0.00 4.30
488 498 3.986277 TGTCGAAAACTTGTACTCCCTC 58.014 45.455 0.00 0.00 0.00 4.30
489 499 4.039973 TCATGTCGAAAACTTGTACTCCCT 59.960 41.667 0.00 0.00 35.19 4.20
490 500 4.151867 GTCATGTCGAAAACTTGTACTCCC 59.848 45.833 0.00 0.00 35.19 4.30
491 501 4.143389 CGTCATGTCGAAAACTTGTACTCC 60.143 45.833 6.49 0.00 35.19 3.85
492 502 4.143389 CCGTCATGTCGAAAACTTGTACTC 60.143 45.833 14.01 0.00 35.19 2.59
493 503 3.739300 CCGTCATGTCGAAAACTTGTACT 59.261 43.478 14.01 0.00 35.19 2.73
494 504 3.663493 GCCGTCATGTCGAAAACTTGTAC 60.663 47.826 14.01 0.00 35.19 2.90
495 505 2.477375 GCCGTCATGTCGAAAACTTGTA 59.523 45.455 14.01 0.00 35.19 2.41
496 506 1.263217 GCCGTCATGTCGAAAACTTGT 59.737 47.619 14.01 0.00 35.19 3.16
497 507 1.721489 CGCCGTCATGTCGAAAACTTG 60.721 52.381 14.01 0.00 35.01 3.16
505 515 0.785378 TAAAACACGCCGTCATGTCG 59.215 50.000 5.32 5.32 0.00 4.35
518 528 5.616270 TCACAGGCAGATAAGTGTAAAACA 58.384 37.500 0.00 0.00 33.84 2.83
539 549 8.918202 ACACTCACTAAATGATTTACCTTTCA 57.082 30.769 0.00 0.00 36.48 2.69
561 571 9.118236 GAATTAATCACAGAAAAACAGCTACAC 57.882 33.333 0.00 0.00 0.00 2.90
567 577 8.955061 ATGTCGAATTAATCACAGAAAAACAG 57.045 30.769 0.00 0.00 0.00 3.16
569 579 8.237267 AGGATGTCGAATTAATCACAGAAAAAC 58.763 33.333 0.00 0.00 0.00 2.43
570 580 8.335532 AGGATGTCGAATTAATCACAGAAAAA 57.664 30.769 0.00 0.00 0.00 1.94
571 581 7.921786 AGGATGTCGAATTAATCACAGAAAA 57.078 32.000 0.00 0.00 0.00 2.29
572 582 9.443323 TTTAGGATGTCGAATTAATCACAGAAA 57.557 29.630 0.00 0.00 0.00 2.52
702 713 4.905456 ACGGGGACATCCAGAAAATCTATA 59.095 41.667 0.00 0.00 37.91 1.31
709 720 1.002624 GCACGGGGACATCCAGAAA 60.003 57.895 0.00 0.00 37.91 2.52
795 806 3.059884 CAAGAAGTCGCAGCTAAAGTGA 58.940 45.455 0.00 0.00 0.00 3.41
796 807 2.802816 ACAAGAAGTCGCAGCTAAAGTG 59.197 45.455 0.00 0.00 0.00 3.16
832 843 4.400529 TGTTTCTACACTCACAGCAGAA 57.599 40.909 0.00 0.00 0.00 3.02
913 924 2.744741 TGCAGTCACGAGTTTGAAAACA 59.255 40.909 8.53 0.00 41.30 2.83
914 925 3.398954 TGCAGTCACGAGTTTGAAAAC 57.601 42.857 0.00 0.00 39.17 2.43
916 927 4.123506 TGTATGCAGTCACGAGTTTGAAA 58.876 39.130 0.00 0.00 0.00 2.69
917 928 3.723260 TGTATGCAGTCACGAGTTTGAA 58.277 40.909 0.00 0.00 0.00 2.69
1046 1057 2.071688 AGAGCTTGCGCGGATTATAG 57.928 50.000 8.83 0.00 42.32 1.31
1056 1067 1.212616 GTAGGTGCATAGAGCTTGCG 58.787 55.000 4.50 0.00 45.94 4.85
1072 1083 8.270111 ACTTTTGTGAAAACAAAACAAACGTAG 58.730 29.630 11.61 4.04 41.57 3.51
1362 1373 3.097877 TCGACATGAGAAATCGATGGG 57.902 47.619 0.00 0.00 39.80 4.00
1442 1453 3.728845 ACATAAACAGTCGCTCAACACT 58.271 40.909 0.00 0.00 0.00 3.55
1580 1595 0.409092 TTGCCACAGATGAACCCCAT 59.591 50.000 0.00 0.00 38.43 4.00
1586 1601 3.286353 TCACAAGTTTGCCACAGATGAA 58.714 40.909 0.00 0.00 0.00 2.57
1663 1678 4.252971 TGACGACTTAAAAGGACTGAGG 57.747 45.455 0.00 0.00 0.00 3.86
1667 1682 6.596497 TGAAACTTTGACGACTTAAAAGGACT 59.404 34.615 0.00 0.00 35.64 3.85
1679 1694 1.266718 GGCAGCATGAAACTTTGACGA 59.733 47.619 0.00 0.00 39.69 4.20
1680 1695 1.001487 TGGCAGCATGAAACTTTGACG 60.001 47.619 0.00 0.00 39.69 4.35
1681 1696 2.798976 TGGCAGCATGAAACTTTGAC 57.201 45.000 0.00 0.00 39.69 3.18
1709 3292 0.979709 TCTGGCAGAGGACTGATGGG 60.980 60.000 14.43 0.00 46.03 4.00
1713 3296 1.228988 TGCTCTGGCAGAGGACTGA 60.229 57.895 37.73 11.38 46.03 3.41
1723 3306 1.747709 AGTGATCAACATGCTCTGGC 58.252 50.000 0.00 0.00 39.26 4.85
1724 3307 3.504906 ACAAAGTGATCAACATGCTCTGG 59.495 43.478 0.00 0.00 0.00 3.86
1725 3308 4.761235 ACAAAGTGATCAACATGCTCTG 57.239 40.909 0.00 0.00 0.00 3.35
1726 3309 6.883217 AGATAACAAAGTGATCAACATGCTCT 59.117 34.615 0.00 0.00 0.00 4.09
1745 3603 8.986477 ATTACCTGTTTTGCATTCAAGATAAC 57.014 30.769 0.00 0.00 33.12 1.89
1750 3608 5.170748 GGGATTACCTGTTTTGCATTCAAG 58.829 41.667 0.00 0.00 35.85 3.02
1778 3636 1.104630 GAGGACTCGAGGGGTAAGTG 58.895 60.000 18.41 0.00 0.00 3.16
1817 3675 1.632422 GCGCAATGGAGTTTGGATTG 58.368 50.000 0.30 0.00 0.00 2.67
1845 3707 3.691609 CAGTTCCTAAAGCTCATGGTTCC 59.308 47.826 0.00 0.00 32.90 3.62
1849 3711 3.441572 CCAACAGTTCCTAAAGCTCATGG 59.558 47.826 0.00 0.00 0.00 3.66
1861 3723 0.106918 TGTGTGGACCCAACAGTTCC 60.107 55.000 0.00 0.00 0.00 3.62
1870 3732 0.755327 AAAACAGGCTGTGTGGACCC 60.755 55.000 22.83 0.00 40.26 4.46
1941 3810 2.022195 GCACCTCCGTGTCATCTACTA 58.978 52.381 0.00 0.00 42.39 1.82
1942 3811 0.818296 GCACCTCCGTGTCATCTACT 59.182 55.000 0.00 0.00 42.39 2.57
1943 3812 0.179108 GGCACCTCCGTGTCATCTAC 60.179 60.000 0.00 0.00 44.40 2.59
1995 3866 8.995027 AAATCATTGCCTTTAGTCCATGTATA 57.005 30.769 0.00 0.00 0.00 1.47
1996 3867 7.902920 AAATCATTGCCTTTAGTCCATGTAT 57.097 32.000 0.00 0.00 0.00 2.29
2019 3890 8.471609 TCAATCTGTATACGGTATGAGTTGAAA 58.528 33.333 11.47 0.00 0.00 2.69
2020 3891 7.919091 GTCAATCTGTATACGGTATGAGTTGAA 59.081 37.037 17.01 0.00 0.00 2.69
2041 3912 3.672808 CTGGCTCAGTTGAAGAGTCAAT 58.327 45.455 0.00 0.00 46.01 2.57
2072 3943 2.101082 GGAGACCTGATCTACGAAACCC 59.899 54.545 0.00 0.00 38.00 4.11
2111 3987 2.105477 AGACCGATCTGGATTCCAATGG 59.895 50.000 6.88 8.45 42.00 3.16
2121 3997 4.256920 AGAATCAAACAAGACCGATCTGG 58.743 43.478 2.55 2.55 46.41 3.86
2134 4011 9.201989 AGGGGAAAATTCCTATAAGAATCAAAC 57.798 33.333 11.75 0.00 46.72 2.93
2297 4178 3.613432 GCCGGTCTATAGTACCATTTCCG 60.613 52.174 16.65 11.02 36.78 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.