Multiple sequence alignment - TraesCS2B01G308800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G308800 chr2B 100.000 1935 0 0 1 1935 441899166 441897232 0.000000e+00 3574.0
1 TraesCS2B01G308800 chr2B 83.602 1677 264 11 35 1705 159215093 159213422 0.000000e+00 1563.0
2 TraesCS2B01G308800 chr2B 100.000 177 0 0 2262 2438 441896905 441896729 6.500000e-86 327.0
3 TraesCS2B01G308800 chr1D 90.884 1810 148 12 102 1898 379793073 379791268 0.000000e+00 2412.0
4 TraesCS2B01G308800 chr2A 84.151 1691 250 15 32 1713 672641141 672639460 0.000000e+00 1622.0
5 TraesCS2B01G308800 chr2A 83.792 1709 269 8 7 1711 596371857 596373561 0.000000e+00 1615.0
6 TraesCS2B01G308800 chr4D 84.032 1647 252 11 73 1713 360457219 360458860 0.000000e+00 1574.0
7 TraesCS2B01G308800 chr5D 83.462 1687 269 10 32 1713 484147911 484146230 0.000000e+00 1561.0
8 TraesCS2B01G308800 chr5D 82.908 1685 277 11 34 1713 301093178 301094856 0.000000e+00 1506.0
9 TraesCS2B01G308800 chr7B 83.492 1678 262 14 35 1705 45045387 45043718 0.000000e+00 1550.0
10 TraesCS2B01G308800 chr7B 93.333 195 11 2 1741 1935 604441702 604441894 1.100000e-73 287.0
11 TraesCS2B01G308800 chr7B 93.299 194 11 2 1741 1934 405247290 405247099 3.970000e-73 285.0
12 TraesCS2B01G308800 chr7B 93.333 195 10 3 1741 1935 604450678 604450869 3.970000e-73 285.0
13 TraesCS2B01G308800 chr4B 83.079 1702 270 17 23 1715 534709546 534711238 0.000000e+00 1531.0
14 TraesCS2B01G308800 chrUn 90.616 341 31 1 1412 1751 336765553 336765893 3.700000e-123 451.0
15 TraesCS2B01G308800 chrUn 90.616 341 31 1 1412 1751 350941945 350942285 3.700000e-123 451.0
16 TraesCS2B01G308800 chrUn 90.909 132 4 8 1803 1930 336765895 336766022 1.160000e-38 171.0
17 TraesCS2B01G308800 chrUn 90.909 132 4 8 1803 1930 350942287 350942414 1.160000e-38 171.0
18 TraesCS2B01G308800 chr4A 90.616 341 31 1 1412 1751 692396888 692396548 3.700000e-123 451.0
19 TraesCS2B01G308800 chr4A 90.909 132 4 8 1803 1930 692396546 692396419 1.160000e-38 171.0
20 TraesCS2B01G308800 chr4A 90.698 43 3 1 2361 2402 52988887 52988929 3.390000e-04 56.5
21 TraesCS2B01G308800 chr1A 90.029 341 33 1 1412 1751 557052125 557051785 8.000000e-120 440.0
22 TraesCS2B01G308800 chr1B 94.359 195 9 2 1741 1935 410131992 410132184 5.100000e-77 298.0
23 TraesCS2B01G308800 chr1B 92.821 195 12 2 1741 1935 421939104 421939296 5.130000e-72 281.0
24 TraesCS2B01G308800 chr6B 92.821 195 12 2 1741 1935 715130872 715131064 5.130000e-72 281.0
25 TraesCS2B01G308800 chr2D 80.612 98 12 5 2307 2399 409448972 409448877 4.350000e-08 69.4
26 TraesCS2B01G308800 chr3A 100.000 31 0 0 2361 2391 258278791 258278761 9.420000e-05 58.4
27 TraesCS2B01G308800 chr6A 96.970 33 1 0 2361 2393 91612212 91612244 3.390000e-04 56.5
28 TraesCS2B01G308800 chr6A 96.970 33 1 0 2361 2393 91623545 91623577 3.390000e-04 56.5
29 TraesCS2B01G308800 chr6A 96.970 33 1 0 2361 2393 276048819 276048787 3.390000e-04 56.5
30 TraesCS2B01G308800 chr6A 96.970 33 1 0 2361 2393 276059391 276059359 3.390000e-04 56.5
31 TraesCS2B01G308800 chr6A 96.970 33 1 0 2361 2393 318077537 318077505 3.390000e-04 56.5
32 TraesCS2B01G308800 chr3B 92.500 40 2 1 2361 2399 233269336 233269375 3.390000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G308800 chr2B 441896729 441899166 2437 True 1950.5 3574 100.000 1 2438 2 chr2B.!!$R2 2437
1 TraesCS2B01G308800 chr2B 159213422 159215093 1671 True 1563.0 1563 83.602 35 1705 1 chr2B.!!$R1 1670
2 TraesCS2B01G308800 chr1D 379791268 379793073 1805 True 2412.0 2412 90.884 102 1898 1 chr1D.!!$R1 1796
3 TraesCS2B01G308800 chr2A 672639460 672641141 1681 True 1622.0 1622 84.151 32 1713 1 chr2A.!!$R1 1681
4 TraesCS2B01G308800 chr2A 596371857 596373561 1704 False 1615.0 1615 83.792 7 1711 1 chr2A.!!$F1 1704
5 TraesCS2B01G308800 chr4D 360457219 360458860 1641 False 1574.0 1574 84.032 73 1713 1 chr4D.!!$F1 1640
6 TraesCS2B01G308800 chr5D 484146230 484147911 1681 True 1561.0 1561 83.462 32 1713 1 chr5D.!!$R1 1681
7 TraesCS2B01G308800 chr5D 301093178 301094856 1678 False 1506.0 1506 82.908 34 1713 1 chr5D.!!$F1 1679
8 TraesCS2B01G308800 chr7B 45043718 45045387 1669 True 1550.0 1550 83.492 35 1705 1 chr7B.!!$R1 1670
9 TraesCS2B01G308800 chr4B 534709546 534711238 1692 False 1531.0 1531 83.079 23 1715 1 chr4B.!!$F1 1692

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
534 535 0.391263 GTAGGCCACAAACCTCCTCG 60.391 60.0 5.01 0.0 38.81 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1869 1883 0.679002 AAGCATGCCTCAAGACGCAT 60.679 50.0 15.66 1.48 46.47 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
139 140 6.976925 CCAACCTCTCATTGATAAGATTTTGC 59.023 38.462 0.00 0.00 0.00 3.68
174 175 2.999928 TGGAGGGGGAAGTTACTTTCT 58.000 47.619 3.17 0.00 0.00 2.52
179 180 5.489249 GAGGGGGAAGTTACTTTCTTACTG 58.511 45.833 3.17 0.00 0.00 2.74
206 207 4.873010 AGACTAACTCTCATCAAGGCCTA 58.127 43.478 5.16 0.00 0.00 3.93
232 233 3.433598 GGCCAGCATTCCTGTGTATCTAA 60.434 47.826 0.00 0.00 40.06 2.10
260 261 7.668469 GTCCTTCTTTAAGTTTCCTAAATGGGA 59.332 37.037 0.00 0.00 36.20 4.37
264 265 9.822727 TTCTTTAAGTTTCCTAAATGGGATCTT 57.177 29.630 0.00 8.13 35.07 2.40
336 337 3.416156 GAACAGGAAACTTCATCTGGCT 58.584 45.455 0.00 0.00 40.21 4.75
363 364 4.160439 TGGCACCTAGTCTGTATGAAGAAG 59.840 45.833 0.00 0.00 0.00 2.85
432 433 2.738587 TGTTAGGCAGTTGGGTCAAA 57.261 45.000 0.00 0.00 0.00 2.69
444 445 3.017048 TGGGTCAAAAGATATGCCCAG 57.983 47.619 0.00 0.00 38.42 4.45
480 481 7.052873 AGATCTGGAAAACCATCATAGACAAG 58.947 38.462 0.00 0.00 0.00 3.16
487 488 9.956720 GGAAAACCATCATAGACAAGAAATATG 57.043 33.333 0.00 0.00 0.00 1.78
534 535 0.391263 GTAGGCCACAAACCTCCTCG 60.391 60.000 5.01 0.00 38.81 4.63
555 556 3.347216 GAGCTTTTGGCAAGGAGTCATA 58.653 45.455 0.00 0.00 44.79 2.15
621 622 6.377080 AGGGAATGGGAGGAAAATTAGATTC 58.623 40.000 0.00 0.00 0.00 2.52
765 766 9.217278 CTTACTTTTAGGAGAGTTTTTACCTCC 57.783 37.037 0.00 0.00 45.16 4.30
828 829 3.454858 AGAGACTGCCCTTAATGGAGAA 58.545 45.455 0.24 0.00 38.35 2.87
831 832 3.846588 AGACTGCCCTTAATGGAGAAGAA 59.153 43.478 0.24 0.00 38.35 2.52
858 859 6.478129 TGCTATGATCTGGCAATATGAATCA 58.522 36.000 0.00 0.00 38.56 2.57
867 868 6.041182 TCTGGCAATATGAATCAAAGGGAATG 59.959 38.462 0.00 0.00 0.00 2.67
897 898 7.725844 TCTTCTAGTTCTCTGTATGCCATCATA 59.274 37.037 0.00 0.00 34.22 2.15
975 976 4.835056 CCTCCCAGAATCCAAGTTTTTCTT 59.165 41.667 0.00 0.00 36.75 2.52
993 994 3.840437 TGGCTTCTGGCACACAAC 58.160 55.556 0.00 0.00 44.10 3.32
1058 1060 5.319043 AGGAACCCAGATTGTTTGTTCTA 57.681 39.130 0.00 0.00 36.45 2.10
1110 1112 3.791973 TTTGGTTGTGTGGTTGCTAAG 57.208 42.857 0.00 0.00 0.00 2.18
1127 1129 3.620821 GCTAAGAACATCTGGAGTGAAGC 59.379 47.826 0.00 0.00 0.00 3.86
1132 1134 3.107402 ACATCTGGAGTGAAGCCTCTA 57.893 47.619 0.00 0.00 0.00 2.43
1179 1181 5.305585 TCTAGTTACCTTTTCAGTGCCAAG 58.694 41.667 0.00 0.00 0.00 3.61
1317 1319 3.446442 AAACAGATCTGGTGGCTGATT 57.554 42.857 26.08 6.41 33.94 2.57
1322 1324 2.309755 AGATCTGGTGGCTGATTTGGAA 59.690 45.455 0.00 0.00 0.00 3.53
1335 1337 3.909995 TGATTTGGAAGACCCTCAAGAGA 59.090 43.478 0.00 0.00 35.38 3.10
1362 1364 5.762179 TGATTCTGTACACCAAGGATTCT 57.238 39.130 0.00 0.00 0.00 2.40
1411 1413 3.889815 TGGGTATCCTGCATTCTCAAAG 58.110 45.455 0.00 0.00 0.00 2.77
1419 1421 1.076024 TGCATTCTCAAAGCTCCCCTT 59.924 47.619 0.00 0.00 34.51 3.95
1493 1495 0.829990 CCTCTTCTCTCCCCAAGCTC 59.170 60.000 0.00 0.00 0.00 4.09
1519 1521 0.820871 GGGATGCGCAAAAATGGGTA 59.179 50.000 17.11 0.00 0.00 3.69
1549 1551 2.185310 GACATCTCAAGGCCGGGTGT 62.185 60.000 2.18 1.51 0.00 4.16
1676 1679 0.107945 GCAGATCAAGGAGGTTCGCT 60.108 55.000 0.00 0.00 0.00 4.93
1715 1718 2.365293 GACAAAAGGATGTTGGCTGGTT 59.635 45.455 0.00 0.00 38.71 3.67
1724 1727 2.554636 TTGGCTGGTTCTTGCTGCG 61.555 57.895 0.00 0.00 0.00 5.18
1726 1729 2.558313 GCTGGTTCTTGCTGCGAC 59.442 61.111 0.00 0.00 0.00 5.19
1751 1754 2.050144 CTGCCCCCTAGCTTATCAGAA 58.950 52.381 0.00 0.00 0.00 3.02
1753 1756 2.050918 GCCCCCTAGCTTATCAGAACT 58.949 52.381 0.00 0.00 0.00 3.01
1754 1757 2.037902 GCCCCCTAGCTTATCAGAACTC 59.962 54.545 0.00 0.00 0.00 3.01
1765 1768 5.395103 GCTTATCAGAACTCCTGTCTGTGAT 60.395 44.000 1.67 0.00 43.38 3.06
1766 1769 6.611613 TTATCAGAACTCCTGTCTGTGATT 57.388 37.500 1.67 0.00 43.38 2.57
1767 1770 7.631594 GCTTATCAGAACTCCTGTCTGTGATTA 60.632 40.741 1.67 0.00 43.38 1.75
1768 1771 6.805016 ATCAGAACTCCTGTCTGTGATTAT 57.195 37.500 1.67 0.00 43.38 1.28
1769 1772 6.214191 TCAGAACTCCTGTCTGTGATTATC 57.786 41.667 1.67 0.00 43.38 1.75
1775 1783 3.119291 CCTGTCTGTGATTATCGTCAGC 58.881 50.000 10.65 7.82 0.00 4.26
1780 1788 4.091509 GTCTGTGATTATCGTCAGCGTTTT 59.908 41.667 10.65 0.00 39.49 2.43
1787 1795 6.754675 TGATTATCGTCAGCGTTTTCAGATAA 59.245 34.615 0.00 0.00 39.49 1.75
1795 1803 4.695455 CAGCGTTTTCAGATAAGAGGGAAA 59.305 41.667 0.00 0.00 0.00 3.13
1839 1853 2.029918 GCTGTAGGCCTCAAACCTTTTG 60.030 50.000 9.68 0.00 38.81 2.44
1840 1854 1.960689 TGTAGGCCTCAAACCTTTTGC 59.039 47.619 9.68 0.00 38.81 3.68
1844 1858 1.602920 GGCCTCAAACCTTTTGCTTCG 60.603 52.381 0.00 0.00 0.00 3.79
1845 1859 1.067060 GCCTCAAACCTTTTGCTTCGT 59.933 47.619 0.00 0.00 0.00 3.85
1848 1862 3.551485 CCTCAAACCTTTTGCTTCGTTTG 59.449 43.478 5.39 5.39 44.03 2.93
1849 1863 4.173256 CTCAAACCTTTTGCTTCGTTTGT 58.827 39.130 10.33 0.00 43.45 2.83
1852 1866 5.119434 TCAAACCTTTTGCTTCGTTTGTTTC 59.881 36.000 10.33 0.00 43.45 2.78
1853 1867 4.450082 ACCTTTTGCTTCGTTTGTTTCT 57.550 36.364 0.00 0.00 0.00 2.52
1862 1876 4.205181 GCTTCGTTTGTTTCTTTGCTCTTC 59.795 41.667 0.00 0.00 0.00 2.87
1869 1883 4.269183 TGTTTCTTTGCTCTTCCAGAACA 58.731 39.130 0.00 0.00 0.00 3.18
1875 1889 0.723981 GCTCTTCCAGAACATGCGTC 59.276 55.000 0.00 0.00 0.00 5.19
1893 1907 1.615392 GTCTTGAGGCATGCTTGGTTT 59.385 47.619 18.92 0.00 0.00 3.27
1894 1908 1.614903 TCTTGAGGCATGCTTGGTTTG 59.385 47.619 18.92 2.74 0.00 2.93
1896 1910 1.412079 TGAGGCATGCTTGGTTTGTT 58.588 45.000 18.92 0.00 0.00 2.83
1897 1911 1.068895 TGAGGCATGCTTGGTTTGTTG 59.931 47.619 18.92 0.00 0.00 3.33
1898 1912 0.393820 AGGCATGCTTGGTTTGTTGG 59.606 50.000 18.92 0.00 0.00 3.77
1899 1913 0.392336 GGCATGCTTGGTTTGTTGGA 59.608 50.000 18.92 0.00 0.00 3.53
1900 1914 1.202627 GGCATGCTTGGTTTGTTGGAA 60.203 47.619 18.92 0.00 0.00 3.53
1901 1915 2.559440 GCATGCTTGGTTTGTTGGAAA 58.441 42.857 11.37 0.00 0.00 3.13
1932 1946 8.785329 TTGGTTTCATTATTTTTAATGGAGCC 57.215 30.769 11.09 11.09 42.95 4.70
1933 1947 7.038659 TGGTTTCATTATTTTTAATGGAGCCG 58.961 34.615 12.47 0.00 44.52 5.52
1934 1948 6.478673 GGTTTCATTATTTTTAATGGAGCCGG 59.521 38.462 0.00 0.00 36.84 6.13
2282 2296 4.836125 GCTCCAATTCAGAAGTGTTTGA 57.164 40.909 9.66 0.00 0.00 2.69
2283 2297 5.186996 GCTCCAATTCAGAAGTGTTTGAA 57.813 39.130 9.66 0.00 37.68 2.69
2284 2298 5.776744 GCTCCAATTCAGAAGTGTTTGAAT 58.223 37.500 9.66 0.00 43.79 2.57
2286 2300 7.370383 GCTCCAATTCAGAAGTGTTTGAATTA 58.630 34.615 9.66 0.00 46.66 1.40
2287 2301 7.867403 GCTCCAATTCAGAAGTGTTTGAATTAA 59.133 33.333 9.66 4.11 46.66 1.40
2288 2302 9.748708 CTCCAATTCAGAAGTGTTTGAATTAAA 57.251 29.630 9.66 3.85 46.66 1.52
2297 2311 9.696917 AGAAGTGTTTGAATTAAATCAATGTCC 57.303 29.630 6.79 0.00 38.98 4.02
2298 2312 9.474920 GAAGTGTTTGAATTAAATCAATGTCCA 57.525 29.630 6.79 0.45 38.98 4.02
2306 2320 9.859427 TGAATTAAATCAATGTCCATTTCTGTC 57.141 29.630 0.00 0.00 0.00 3.51
2307 2321 9.305925 GAATTAAATCAATGTCCATTTCTGTCC 57.694 33.333 0.00 0.00 0.00 4.02
2308 2322 8.599624 ATTAAATCAATGTCCATTTCTGTCCT 57.400 30.769 0.00 0.00 0.00 3.85
2309 2323 9.699410 ATTAAATCAATGTCCATTTCTGTCCTA 57.301 29.630 0.00 0.00 0.00 2.94
2310 2324 7.396540 AAATCAATGTCCATTTCTGTCCTAC 57.603 36.000 0.00 0.00 0.00 3.18
2311 2325 5.497464 TCAATGTCCATTTCTGTCCTACA 57.503 39.130 0.00 0.00 0.00 2.74
2312 2326 5.875224 TCAATGTCCATTTCTGTCCTACAA 58.125 37.500 0.00 0.00 0.00 2.41
2313 2327 6.303054 TCAATGTCCATTTCTGTCCTACAAA 58.697 36.000 0.00 0.00 0.00 2.83
2314 2328 6.775142 TCAATGTCCATTTCTGTCCTACAAAA 59.225 34.615 0.00 0.00 0.00 2.44
2315 2329 7.286546 TCAATGTCCATTTCTGTCCTACAAAAA 59.713 33.333 0.00 0.00 0.00 1.94
2316 2330 7.781324 ATGTCCATTTCTGTCCTACAAAAAT 57.219 32.000 0.00 0.00 29.48 1.82
2317 2331 6.980593 TGTCCATTTCTGTCCTACAAAAATG 58.019 36.000 10.48 10.48 42.91 2.32
2318 2332 6.549364 TGTCCATTTCTGTCCTACAAAAATGT 59.451 34.615 14.44 0.00 42.16 2.71
2319 2333 7.084486 GTCCATTTCTGTCCTACAAAAATGTC 58.916 38.462 14.44 6.73 42.16 3.06
2320 2334 6.208599 TCCATTTCTGTCCTACAAAAATGTCC 59.791 38.462 14.44 0.00 42.16 4.02
2321 2335 6.015519 CCATTTCTGTCCTACAAAAATGTCCA 60.016 38.462 14.44 0.00 42.16 4.02
2322 2336 6.385649 TTTCTGTCCTACAAAAATGTCCAC 57.614 37.500 0.00 0.00 0.00 4.02
2323 2337 4.394729 TCTGTCCTACAAAAATGTCCACC 58.605 43.478 0.00 0.00 0.00 4.61
2324 2338 4.141287 CTGTCCTACAAAAATGTCCACCA 58.859 43.478 0.00 0.00 0.00 4.17
2325 2339 4.735369 TGTCCTACAAAAATGTCCACCAT 58.265 39.130 0.00 0.00 34.36 3.55
2326 2340 5.144100 TGTCCTACAAAAATGTCCACCATT 58.856 37.500 0.00 0.00 45.81 3.16
2346 2360 7.352079 CCATTTATGGTTAGGCTTTTCATCT 57.648 36.000 0.00 0.00 43.05 2.90
2347 2361 7.785033 CCATTTATGGTTAGGCTTTTCATCTT 58.215 34.615 0.00 0.00 43.05 2.40
2348 2362 8.260114 CCATTTATGGTTAGGCTTTTCATCTTT 58.740 33.333 0.00 0.00 43.05 2.52
2349 2363 9.657419 CATTTATGGTTAGGCTTTTCATCTTTT 57.343 29.630 0.00 0.00 0.00 2.27
2373 2387 8.795786 TTTTCCTAAATCGAACATTTGTGAAG 57.204 30.769 0.00 0.00 0.00 3.02
2374 2388 6.494893 TCCTAAATCGAACATTTGTGAAGG 57.505 37.500 0.00 0.00 0.00 3.46
2375 2389 5.414454 TCCTAAATCGAACATTTGTGAAGGG 59.586 40.000 0.00 0.00 0.00 3.95
2376 2390 3.575965 AATCGAACATTTGTGAAGGGC 57.424 42.857 0.00 0.00 0.00 5.19
2377 2391 1.974265 TCGAACATTTGTGAAGGGCA 58.026 45.000 0.00 0.00 0.00 5.36
2378 2392 2.513753 TCGAACATTTGTGAAGGGCAT 58.486 42.857 0.00 0.00 0.00 4.40
2379 2393 2.890311 TCGAACATTTGTGAAGGGCATT 59.110 40.909 0.00 0.00 0.00 3.56
2380 2394 3.320541 TCGAACATTTGTGAAGGGCATTT 59.679 39.130 0.00 0.00 0.00 2.32
2381 2395 4.057432 CGAACATTTGTGAAGGGCATTTT 58.943 39.130 0.00 0.00 0.00 1.82
2382 2396 4.084433 CGAACATTTGTGAAGGGCATTTTG 60.084 41.667 0.00 0.00 0.00 2.44
2383 2397 3.742385 ACATTTGTGAAGGGCATTTTGG 58.258 40.909 0.00 0.00 0.00 3.28
2384 2398 3.390639 ACATTTGTGAAGGGCATTTTGGA 59.609 39.130 0.00 0.00 0.00 3.53
2385 2399 4.041938 ACATTTGTGAAGGGCATTTTGGAT 59.958 37.500 0.00 0.00 0.00 3.41
2386 2400 4.703379 TTTGTGAAGGGCATTTTGGATT 57.297 36.364 0.00 0.00 0.00 3.01
2387 2401 3.959535 TGTGAAGGGCATTTTGGATTC 57.040 42.857 0.00 0.00 0.00 2.52
2388 2402 3.237746 TGTGAAGGGCATTTTGGATTCA 58.762 40.909 0.00 0.00 0.00 2.57
2389 2403 3.839490 TGTGAAGGGCATTTTGGATTCAT 59.161 39.130 0.00 0.00 0.00 2.57
2390 2404 4.286549 TGTGAAGGGCATTTTGGATTCATT 59.713 37.500 0.00 0.00 0.00 2.57
2391 2405 4.632688 GTGAAGGGCATTTTGGATTCATTG 59.367 41.667 0.00 0.00 0.00 2.82
2392 2406 4.531339 TGAAGGGCATTTTGGATTCATTGA 59.469 37.500 0.00 0.00 0.00 2.57
2393 2407 5.190132 TGAAGGGCATTTTGGATTCATTGAT 59.810 36.000 0.00 0.00 0.00 2.57
2394 2408 5.703730 AGGGCATTTTGGATTCATTGATT 57.296 34.783 0.00 0.00 0.00 2.57
2395 2409 6.811634 AGGGCATTTTGGATTCATTGATTA 57.188 33.333 0.00 0.00 0.00 1.75
2396 2410 7.383156 AGGGCATTTTGGATTCATTGATTAT 57.617 32.000 0.00 0.00 0.00 1.28
2397 2411 7.808218 AGGGCATTTTGGATTCATTGATTATT 58.192 30.769 0.00 0.00 0.00 1.40
2398 2412 8.276477 AGGGCATTTTGGATTCATTGATTATTT 58.724 29.630 0.00 0.00 0.00 1.40
2399 2413 8.347035 GGGCATTTTGGATTCATTGATTATTTG 58.653 33.333 0.00 0.00 0.00 2.32
2400 2414 9.111613 GGCATTTTGGATTCATTGATTATTTGA 57.888 29.630 0.00 0.00 0.00 2.69
2404 2418 9.947433 TTTTGGATTCATTGATTATTTGAAGCT 57.053 25.926 0.00 0.00 36.35 3.74
2407 2421 9.412460 TGGATTCATTGATTATTTGAAGCTAGT 57.588 29.630 0.00 0.00 36.35 2.57
2421 2435 7.611213 TTGAAGCTAGTTTATTAGAAGGTGC 57.389 36.000 0.00 0.00 0.00 5.01
2422 2436 6.947464 TGAAGCTAGTTTATTAGAAGGTGCT 58.053 36.000 0.00 0.00 0.00 4.40
2423 2437 8.074613 TGAAGCTAGTTTATTAGAAGGTGCTA 57.925 34.615 0.00 0.00 0.00 3.49
2424 2438 8.198109 TGAAGCTAGTTTATTAGAAGGTGCTAG 58.802 37.037 0.00 0.00 0.00 3.42
2425 2439 7.056844 AGCTAGTTTATTAGAAGGTGCTAGG 57.943 40.000 0.00 0.00 0.00 3.02
2426 2440 6.042208 AGCTAGTTTATTAGAAGGTGCTAGGG 59.958 42.308 0.00 0.00 0.00 3.53
2427 2441 6.183360 GCTAGTTTATTAGAAGGTGCTAGGGT 60.183 42.308 0.00 0.00 0.00 4.34
2428 2442 6.638021 AGTTTATTAGAAGGTGCTAGGGTT 57.362 37.500 0.00 0.00 0.00 4.11
2429 2443 7.029053 AGTTTATTAGAAGGTGCTAGGGTTT 57.971 36.000 0.00 0.00 0.00 3.27
2430 2444 6.884836 AGTTTATTAGAAGGTGCTAGGGTTTG 59.115 38.462 0.00 0.00 0.00 2.93
2431 2445 6.630203 TTATTAGAAGGTGCTAGGGTTTGA 57.370 37.500 0.00 0.00 0.00 2.69
2432 2446 5.717119 ATTAGAAGGTGCTAGGGTTTGAT 57.283 39.130 0.00 0.00 0.00 2.57
2433 2447 3.636153 AGAAGGTGCTAGGGTTTGATC 57.364 47.619 0.00 0.00 0.00 2.92
2434 2448 2.912956 AGAAGGTGCTAGGGTTTGATCA 59.087 45.455 0.00 0.00 0.00 2.92
2435 2449 3.330701 AGAAGGTGCTAGGGTTTGATCAA 59.669 43.478 3.38 3.38 0.00 2.57
2436 2450 3.806949 AGGTGCTAGGGTTTGATCAAA 57.193 42.857 16.91 16.91 0.00 2.69
2437 2451 4.322057 AGGTGCTAGGGTTTGATCAAAT 57.678 40.909 23.05 10.68 32.36 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 5.067273 CCCACAGTACATTCAAAGGTGTTA 58.933 41.667 0.00 0.00 0.00 2.41
30 31 3.486383 ACCCACAGTACATTCAAAGGTG 58.514 45.455 0.00 0.00 0.00 4.00
48 49 9.516546 CCTAGATATTTTATTGGAAAGGTACCC 57.483 37.037 8.74 0.00 0.00 3.69
97 98 3.716872 GGTTGGATATCCTCCCTTCTCAA 59.283 47.826 22.35 2.44 44.23 3.02
139 140 0.107312 CTCCAACCAGCCATCCTCTG 60.107 60.000 0.00 0.00 0.00 3.35
174 175 6.884836 TGATGAGAGTTAGTCTAGCACAGTAA 59.115 38.462 0.00 0.00 34.71 2.24
179 180 5.587289 CCTTGATGAGAGTTAGTCTAGCAC 58.413 45.833 0.00 0.00 34.71 4.40
206 207 0.899720 CACAGGAATGCTGGCCAAAT 59.100 50.000 7.01 0.00 0.00 2.32
232 233 9.025041 CCATTTAGGAAACTTAAAGAAGGACAT 57.975 33.333 0.00 0.00 43.67 3.06
293 294 4.540099 TCCCCTCAAAGTCACTCCATAAAT 59.460 41.667 0.00 0.00 0.00 1.40
336 337 6.382859 TCTTCATACAGACTAGGTGCCAATTA 59.617 38.462 0.00 0.00 0.00 1.40
363 364 1.380380 CCCAAGCCCTCCATGTTCC 60.380 63.158 0.00 0.00 0.00 3.62
432 433 1.991070 CCCTCATCCTGGGCATATCTT 59.009 52.381 0.00 0.00 37.99 2.40
444 445 1.135094 TCCAGATCTTGCCCTCATCC 58.865 55.000 0.00 0.00 0.00 3.51
534 535 1.609208 TGACTCCTTGCCAAAAGCTC 58.391 50.000 0.00 0.00 44.23 4.09
621 622 3.048600 TCCAAACCAGATATCCTCCCAG 58.951 50.000 0.00 0.00 0.00 4.45
765 766 4.687948 CAGTACCATTCTTCCATCATAGCG 59.312 45.833 0.00 0.00 0.00 4.26
828 829 4.701651 TTGCCAGATCATAGCATCTTCT 57.298 40.909 5.33 0.00 36.20 2.85
831 832 6.309389 TCATATTGCCAGATCATAGCATCT 57.691 37.500 5.33 0.58 36.20 2.90
858 859 7.676468 AGAGAACTAGAAGAGTACATTCCCTTT 59.324 37.037 0.00 0.00 37.44 3.11
867 868 6.319152 TGGCATACAGAGAACTAGAAGAGTAC 59.681 42.308 0.00 0.00 37.44 2.73
975 976 0.682532 TGTTGTGTGCCAGAAGCCAA 60.683 50.000 0.00 0.00 42.71 4.52
1030 1032 5.476945 ACAAACAATCTGGGTTCCTATCAAC 59.523 40.000 0.00 0.00 0.00 3.18
1047 1049 4.100963 TCCTGCTCAGAGTAGAACAAACAA 59.899 41.667 16.69 0.00 28.61 2.83
1058 1060 2.307392 TCTACAGTCTCCTGCTCAGAGT 59.693 50.000 0.00 0.00 42.81 3.24
1110 1112 2.235898 AGAGGCTTCACTCCAGATGTTC 59.764 50.000 0.00 0.00 38.26 3.18
1127 1129 5.667539 TTCTGTGGAGAAGAATGTAGAGG 57.332 43.478 0.00 0.00 32.98 3.69
1132 1134 6.627087 TCCTAATTCTGTGGAGAAGAATGT 57.373 37.500 0.00 0.00 42.26 2.71
1179 1181 3.726291 TTCTTGTTAGCAGGCCAAAAC 57.274 42.857 5.01 3.96 0.00 2.43
1317 1319 2.573462 CCATCTCTTGAGGGTCTTCCAA 59.427 50.000 0.00 0.00 39.15 3.53
1322 1324 3.411454 TCATCCATCTCTTGAGGGTCT 57.589 47.619 0.00 0.00 43.95 3.85
1335 1337 4.474651 TCCTTGGTGTACAGAATCATCCAT 59.525 41.667 0.00 0.00 0.00 3.41
1362 1364 6.038985 CAGTATCTTCTGCATTTTCTCGAGA 58.961 40.000 12.08 12.08 0.00 4.04
1404 1406 1.734655 ACTGAAGGGGAGCTTTGAGA 58.265 50.000 0.00 0.00 0.00 3.27
1411 1413 1.814793 GAAGTCAACTGAAGGGGAGC 58.185 55.000 0.00 0.00 0.00 4.70
1419 1421 3.762407 TTTCATCCCGAAGTCAACTGA 57.238 42.857 0.00 0.00 34.32 3.41
1519 1521 2.612285 TGAGATGTCTGGACTCTGGT 57.388 50.000 2.38 0.00 0.00 4.00
1573 1575 1.601759 GCAGGGCTTGAGCTTGTCA 60.602 57.895 0.00 0.00 41.70 3.58
1575 1577 0.964358 GATGCAGGGCTTGAGCTTGT 60.964 55.000 0.00 0.00 41.70 3.16
1601 1603 4.269523 GGTGTGCCAGGCCAGTCA 62.270 66.667 9.64 0.00 34.09 3.41
1627 1629 1.283029 CCCCCTTCATCTTCTTGAGCA 59.717 52.381 0.00 0.00 0.00 4.26
1654 1657 1.800655 CGAACCTCCTTGATCTGCTCG 60.801 57.143 0.00 0.00 0.00 5.03
1699 1702 2.242043 CAAGAACCAGCCAACATCCTT 58.758 47.619 0.00 0.00 0.00 3.36
1715 1718 3.684990 AGAGCCGTCGCAGCAAGA 61.685 61.111 0.00 0.00 37.52 3.02
1735 1738 3.323403 CAGGAGTTCTGATAAGCTAGGGG 59.677 52.174 0.00 0.00 46.18 4.79
1738 1741 5.359576 ACAGACAGGAGTTCTGATAAGCTAG 59.640 44.000 5.11 0.00 46.18 3.42
1743 1746 6.611613 AATCACAGACAGGAGTTCTGATAA 57.388 37.500 5.11 0.00 46.18 1.75
1751 1754 4.017126 TGACGATAATCACAGACAGGAGT 58.983 43.478 0.00 0.00 0.00 3.85
1753 1756 3.181486 GCTGACGATAATCACAGACAGGA 60.181 47.826 0.00 0.00 32.90 3.86
1754 1757 3.119291 GCTGACGATAATCACAGACAGG 58.881 50.000 0.00 0.00 32.90 4.00
1765 1768 6.327154 TCTTATCTGAAAACGCTGACGATAA 58.673 36.000 0.00 0.00 43.93 1.75
1766 1769 5.886992 TCTTATCTGAAAACGCTGACGATA 58.113 37.500 0.00 0.00 43.93 2.92
1767 1770 4.744570 TCTTATCTGAAAACGCTGACGAT 58.255 39.130 0.00 0.00 43.93 3.73
1768 1771 4.166523 CTCTTATCTGAAAACGCTGACGA 58.833 43.478 0.00 0.00 43.93 4.20
1775 1783 5.648092 ACCATTTCCCTCTTATCTGAAAACG 59.352 40.000 0.00 0.00 31.20 3.60
1780 1788 6.180472 GTTTCACCATTTCCCTCTTATCTGA 58.820 40.000 0.00 0.00 0.00 3.27
1787 1795 2.225117 CCAGGTTTCACCATTTCCCTCT 60.225 50.000 0.00 0.00 41.95 3.69
1795 1803 5.694995 CCTATTACATCCAGGTTTCACCAT 58.305 41.667 0.00 0.00 41.95 3.55
1830 1839 5.234752 AGAAACAAACGAAGCAAAAGGTTT 58.765 33.333 0.00 0.00 33.19 3.27
1833 1842 5.550070 CAAAGAAACAAACGAAGCAAAAGG 58.450 37.500 0.00 0.00 0.00 3.11
1834 1843 5.015108 GCAAAGAAACAAACGAAGCAAAAG 58.985 37.500 0.00 0.00 0.00 2.27
1839 1853 3.695816 AGAGCAAAGAAACAAACGAAGC 58.304 40.909 0.00 0.00 0.00 3.86
1840 1854 4.735338 GGAAGAGCAAAGAAACAAACGAAG 59.265 41.667 0.00 0.00 0.00 3.79
1844 1858 5.248870 TCTGGAAGAGCAAAGAAACAAAC 57.751 39.130 0.00 0.00 38.67 2.93
1862 1876 1.081892 CCTCAAGACGCATGTTCTGG 58.918 55.000 0.00 0.00 0.00 3.86
1869 1883 0.679002 AAGCATGCCTCAAGACGCAT 60.679 50.000 15.66 1.48 46.47 4.73
1875 1889 1.342174 ACAAACCAAGCATGCCTCAAG 59.658 47.619 15.66 1.41 0.00 3.02
1906 1920 9.225436 GGCTCCATTAAAAATAATGAAACCAAA 57.775 29.630 9.53 0.00 39.20 3.28
1907 1921 7.547370 CGGCTCCATTAAAAATAATGAAACCAA 59.453 33.333 9.53 0.00 39.20 3.67
1908 1922 7.038659 CGGCTCCATTAAAAATAATGAAACCA 58.961 34.615 9.53 0.00 39.20 3.67
1909 1923 6.478673 CCGGCTCCATTAAAAATAATGAAACC 59.521 38.462 9.53 6.81 39.20 3.27
1910 1924 7.463469 CCGGCTCCATTAAAAATAATGAAAC 57.537 36.000 9.53 0.27 39.20 2.78
2261 2275 4.836125 TCAAACACTTCTGAATTGGAGC 57.164 40.909 11.70 0.00 0.00 4.70
2262 2276 9.748708 TTTAATTCAAACACTTCTGAATTGGAG 57.251 29.630 16.45 2.49 46.58 3.86
2271 2285 9.696917 GGACATTGATTTAATTCAAACACTTCT 57.303 29.630 14.80 0.00 38.98 2.85
2272 2286 9.474920 TGGACATTGATTTAATTCAAACACTTC 57.525 29.630 14.80 8.23 38.98 3.01
2280 2294 9.859427 GACAGAAATGGACATTGATTTAATTCA 57.141 29.630 0.00 0.00 0.00 2.57
2281 2295 9.305925 GGACAGAAATGGACATTGATTTAATTC 57.694 33.333 0.00 0.00 0.00 2.17
2282 2296 9.039165 AGGACAGAAATGGACATTGATTTAATT 57.961 29.630 0.00 0.00 0.00 1.40
2283 2297 8.599624 AGGACAGAAATGGACATTGATTTAAT 57.400 30.769 0.00 0.00 0.00 1.40
2284 2298 8.956426 GTAGGACAGAAATGGACATTGATTTAA 58.044 33.333 0.00 0.00 0.00 1.52
2285 2299 8.106462 TGTAGGACAGAAATGGACATTGATTTA 58.894 33.333 0.00 0.00 0.00 1.40
2286 2300 6.947733 TGTAGGACAGAAATGGACATTGATTT 59.052 34.615 0.00 0.00 0.00 2.17
2287 2301 6.484288 TGTAGGACAGAAATGGACATTGATT 58.516 36.000 0.00 0.00 0.00 2.57
2288 2302 6.065976 TGTAGGACAGAAATGGACATTGAT 57.934 37.500 0.00 0.00 0.00 2.57
2289 2303 5.497464 TGTAGGACAGAAATGGACATTGA 57.503 39.130 0.00 0.00 0.00 2.57
2290 2304 6.573664 TTTGTAGGACAGAAATGGACATTG 57.426 37.500 0.00 0.00 0.00 2.82
2291 2305 7.595819 TTTTTGTAGGACAGAAATGGACATT 57.404 32.000 0.00 0.00 28.83 2.71
2292 2306 7.781324 ATTTTTGTAGGACAGAAATGGACAT 57.219 32.000 7.16 0.00 40.15 3.06
2298 2312 6.015434 GGTGGACATTTTTGTAGGACAGAAAT 60.015 38.462 3.07 3.07 41.67 2.17
2299 2313 5.300792 GGTGGACATTTTTGTAGGACAGAAA 59.699 40.000 0.00 0.00 36.76 2.52
2300 2314 4.825085 GGTGGACATTTTTGTAGGACAGAA 59.175 41.667 0.00 0.00 0.00 3.02
2301 2315 4.141367 TGGTGGACATTTTTGTAGGACAGA 60.141 41.667 0.00 0.00 0.00 3.41
2302 2316 4.141287 TGGTGGACATTTTTGTAGGACAG 58.859 43.478 0.00 0.00 0.00 3.51
2303 2317 4.171878 TGGTGGACATTTTTGTAGGACA 57.828 40.909 0.00 0.00 0.00 4.02
2323 2337 9.657419 AAAAGATGAAAAGCCTAACCATAAATG 57.343 29.630 0.00 0.00 0.00 2.32
2347 2361 9.243637 CTTCACAAATGTTCGATTTAGGAAAAA 57.756 29.630 0.00 0.00 0.00 1.94
2348 2362 7.865385 CCTTCACAAATGTTCGATTTAGGAAAA 59.135 33.333 0.00 0.00 0.00 2.29
2349 2363 7.367285 CCTTCACAAATGTTCGATTTAGGAAA 58.633 34.615 0.00 0.00 0.00 3.13
2350 2364 6.072175 CCCTTCACAAATGTTCGATTTAGGAA 60.072 38.462 0.00 0.00 0.00 3.36
2351 2365 5.414454 CCCTTCACAAATGTTCGATTTAGGA 59.586 40.000 0.00 0.00 0.00 2.94
2352 2366 5.640732 CCCTTCACAAATGTTCGATTTAGG 58.359 41.667 0.00 0.00 0.00 2.69
2353 2367 5.095490 GCCCTTCACAAATGTTCGATTTAG 58.905 41.667 0.00 0.00 0.00 1.85
2354 2368 4.520874 TGCCCTTCACAAATGTTCGATTTA 59.479 37.500 0.00 0.00 0.00 1.40
2355 2369 3.320541 TGCCCTTCACAAATGTTCGATTT 59.679 39.130 0.00 0.00 0.00 2.17
2356 2370 2.890311 TGCCCTTCACAAATGTTCGATT 59.110 40.909 0.00 0.00 0.00 3.34
2357 2371 2.513753 TGCCCTTCACAAATGTTCGAT 58.486 42.857 0.00 0.00 0.00 3.59
2358 2372 1.974265 TGCCCTTCACAAATGTTCGA 58.026 45.000 0.00 0.00 0.00 3.71
2359 2373 3.302365 AATGCCCTTCACAAATGTTCG 57.698 42.857 0.00 0.00 0.00 3.95
2360 2374 4.213906 CCAAAATGCCCTTCACAAATGTTC 59.786 41.667 0.00 0.00 0.00 3.18
2361 2375 4.136051 CCAAAATGCCCTTCACAAATGTT 58.864 39.130 0.00 0.00 0.00 2.71
2362 2376 3.390639 TCCAAAATGCCCTTCACAAATGT 59.609 39.130 0.00 0.00 0.00 2.71
2363 2377 4.005487 TCCAAAATGCCCTTCACAAATG 57.995 40.909 0.00 0.00 0.00 2.32
2364 2378 4.914177 ATCCAAAATGCCCTTCACAAAT 57.086 36.364 0.00 0.00 0.00 2.32
2365 2379 4.102210 TGAATCCAAAATGCCCTTCACAAA 59.898 37.500 0.00 0.00 0.00 2.83
2366 2380 3.645212 TGAATCCAAAATGCCCTTCACAA 59.355 39.130 0.00 0.00 0.00 3.33
2367 2381 3.237746 TGAATCCAAAATGCCCTTCACA 58.762 40.909 0.00 0.00 0.00 3.58
2368 2382 3.959535 TGAATCCAAAATGCCCTTCAC 57.040 42.857 0.00 0.00 0.00 3.18
2369 2383 4.531339 TCAATGAATCCAAAATGCCCTTCA 59.469 37.500 0.00 0.00 0.00 3.02
2370 2384 5.088680 TCAATGAATCCAAAATGCCCTTC 57.911 39.130 0.00 0.00 0.00 3.46
2371 2385 5.703730 ATCAATGAATCCAAAATGCCCTT 57.296 34.783 0.00 0.00 0.00 3.95
2372 2386 5.703730 AATCAATGAATCCAAAATGCCCT 57.296 34.783 0.00 0.00 0.00 5.19
2373 2387 8.347035 CAAATAATCAATGAATCCAAAATGCCC 58.653 33.333 0.00 0.00 0.00 5.36
2374 2388 9.111613 TCAAATAATCAATGAATCCAAAATGCC 57.888 29.630 0.00 0.00 0.00 4.40
2378 2392 9.947433 AGCTTCAAATAATCAATGAATCCAAAA 57.053 25.926 0.00 0.00 33.03 2.44
2381 2395 9.412460 ACTAGCTTCAAATAATCAATGAATCCA 57.588 29.630 0.00 0.00 33.03 3.41
2395 2409 8.678199 GCACCTTCTAATAAACTAGCTTCAAAT 58.322 33.333 0.00 0.00 0.00 2.32
2396 2410 7.883311 AGCACCTTCTAATAAACTAGCTTCAAA 59.117 33.333 0.00 0.00 0.00 2.69
2397 2411 7.394816 AGCACCTTCTAATAAACTAGCTTCAA 58.605 34.615 0.00 0.00 0.00 2.69
2398 2412 6.947464 AGCACCTTCTAATAAACTAGCTTCA 58.053 36.000 0.00 0.00 0.00 3.02
2399 2413 7.654116 CCTAGCACCTTCTAATAAACTAGCTTC 59.346 40.741 0.00 0.00 0.00 3.86
2400 2414 7.419172 CCCTAGCACCTTCTAATAAACTAGCTT 60.419 40.741 0.00 0.00 0.00 3.74
2401 2415 6.042208 CCCTAGCACCTTCTAATAAACTAGCT 59.958 42.308 0.00 0.00 0.00 3.32
2402 2416 6.183360 ACCCTAGCACCTTCTAATAAACTAGC 60.183 42.308 0.00 0.00 0.00 3.42
2403 2417 7.362802 ACCCTAGCACCTTCTAATAAACTAG 57.637 40.000 0.00 0.00 0.00 2.57
2404 2418 7.744678 AACCCTAGCACCTTCTAATAAACTA 57.255 36.000 0.00 0.00 0.00 2.24
2405 2419 6.638021 AACCCTAGCACCTTCTAATAAACT 57.362 37.500 0.00 0.00 0.00 2.66
2406 2420 6.882678 TCAAACCCTAGCACCTTCTAATAAAC 59.117 38.462 0.00 0.00 0.00 2.01
2407 2421 7.023171 TCAAACCCTAGCACCTTCTAATAAA 57.977 36.000 0.00 0.00 0.00 1.40
2408 2422 6.630203 TCAAACCCTAGCACCTTCTAATAA 57.370 37.500 0.00 0.00 0.00 1.40
2409 2423 6.385759 TGATCAAACCCTAGCACCTTCTAATA 59.614 38.462 0.00 0.00 0.00 0.98
2410 2424 5.191722 TGATCAAACCCTAGCACCTTCTAAT 59.808 40.000 0.00 0.00 0.00 1.73
2411 2425 4.534500 TGATCAAACCCTAGCACCTTCTAA 59.466 41.667 0.00 0.00 0.00 2.10
2412 2426 4.101114 TGATCAAACCCTAGCACCTTCTA 58.899 43.478 0.00 0.00 0.00 2.10
2413 2427 2.912956 TGATCAAACCCTAGCACCTTCT 59.087 45.455 0.00 0.00 0.00 2.85
2414 2428 3.350219 TGATCAAACCCTAGCACCTTC 57.650 47.619 0.00 0.00 0.00 3.46
2415 2429 3.806949 TTGATCAAACCCTAGCACCTT 57.193 42.857 5.45 0.00 0.00 3.50
2416 2430 3.806949 TTTGATCAAACCCTAGCACCT 57.193 42.857 16.91 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.