Multiple sequence alignment - TraesCS2B01G308500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G308500 chr2B 100.000 3245 0 0 1 3245 441791651 441794895 0.000000e+00 5993.0
1 TraesCS2B01G308500 chr2B 88.230 1164 117 12 1062 2212 441480315 441479159 0.000000e+00 1373.0
2 TraesCS2B01G308500 chr2A 93.285 2874 88 46 224 3066 502933094 502935893 0.000000e+00 4141.0
3 TraesCS2B01G308500 chr2A 88.707 1160 107 15 1068 2212 502826049 502824899 0.000000e+00 1395.0
4 TraesCS2B01G308500 chr2D 95.020 2289 55 19 257 2514 372223305 372225565 0.000000e+00 3541.0
5 TraesCS2B01G308500 chr2D 88.306 1163 109 18 1062 2212 372015806 372014659 0.000000e+00 1369.0
6 TraesCS2B01G308500 chr2D 90.231 563 19 22 2506 3065 372229342 372229871 0.000000e+00 702.0
7 TraesCS2B01G308500 chr2D 88.739 222 21 3 1 218 372222957 372223178 5.340000e-68 268.0
8 TraesCS2B01G308500 chr5B 85.655 969 126 13 1270 2228 550488911 550489876 0.000000e+00 1007.0
9 TraesCS2B01G308500 chr5B 96.875 32 0 1 3131 3162 352132771 352132801 6.000000e-03 52.8
10 TraesCS2B01G308500 chr5A 85.592 937 128 7 1270 2203 569793578 569794510 0.000000e+00 976.0
11 TraesCS2B01G308500 chr5A 100.000 31 0 0 3131 3161 606354481 606354451 1.260000e-04 58.4
12 TraesCS2B01G308500 chr5A 100.000 28 0 0 3129 3156 390564958 390564931 6.000000e-03 52.8
13 TraesCS2B01G308500 chr5D 85.397 945 130 8 1270 2210 450577901 450578841 0.000000e+00 974.0
14 TraesCS2B01G308500 chr5D 80.263 304 56 3 1470 1770 447508361 447508663 3.260000e-55 226.0
15 TraesCS2B01G308500 chr6B 100.000 31 0 0 3131 3161 417672972 417672942 1.260000e-04 58.4
16 TraesCS2B01G308500 chr6A 100.000 31 0 0 3131 3161 535860819 535860849 1.260000e-04 58.4
17 TraesCS2B01G308500 chr4B 100.000 31 0 0 3131 3161 139021107 139021137 1.260000e-04 58.4
18 TraesCS2B01G308500 chr4D 97.059 34 0 1 3129 3162 97374927 97374959 4.520000e-04 56.5
19 TraesCS2B01G308500 chr6D 100.000 28 0 0 3079 3106 418268340 418268313 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G308500 chr2B 441791651 441794895 3244 False 5993.000000 5993 100.000 1 3245 1 chr2B.!!$F1 3244
1 TraesCS2B01G308500 chr2B 441479159 441480315 1156 True 1373.000000 1373 88.230 1062 2212 1 chr2B.!!$R1 1150
2 TraesCS2B01G308500 chr2A 502933094 502935893 2799 False 4141.000000 4141 93.285 224 3066 1 chr2A.!!$F1 2842
3 TraesCS2B01G308500 chr2A 502824899 502826049 1150 True 1395.000000 1395 88.707 1068 2212 1 chr2A.!!$R1 1144
4 TraesCS2B01G308500 chr2D 372222957 372229871 6914 False 1503.666667 3541 91.330 1 3065 3 chr2D.!!$F1 3064
5 TraesCS2B01G308500 chr2D 372014659 372015806 1147 True 1369.000000 1369 88.306 1062 2212 1 chr2D.!!$R1 1150
6 TraesCS2B01G308500 chr5B 550488911 550489876 965 False 1007.000000 1007 85.655 1270 2228 1 chr5B.!!$F2 958
7 TraesCS2B01G308500 chr5A 569793578 569794510 932 False 976.000000 976 85.592 1270 2203 1 chr5A.!!$F1 933
8 TraesCS2B01G308500 chr5D 450577901 450578841 940 False 974.000000 974 85.397 1270 2210 1 chr5D.!!$F2 940

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
641 762 1.172812 AAGCAGGCCAAGACGTTTCC 61.173 55.0 5.01 0.0 0.0 3.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2639 6593 1.305297 ATGGGAGTGCCAGACGAGA 60.305 57.895 10.0 0.0 35.15 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.081862 AGGACGTCCTATTGTTTGATTCGA 60.082 41.667 35.59 0.00 46.48 3.71
128 132 9.923143 TTCACTATGCATATGTATACCTACAAC 57.077 33.333 6.92 0.00 41.09 3.32
136 140 7.713507 GCATATGTATACCTACAACAGAACCAA 59.286 37.037 4.29 0.00 41.09 3.67
147 151 6.767524 ACAACAGAACCAAATGTCAGTTTA 57.232 33.333 0.00 0.00 0.00 2.01
150 154 4.274950 ACAGAACCAAATGTCAGTTTACCG 59.725 41.667 0.00 0.00 0.00 4.02
196 200 6.738114 TCTCAAGAACAATGAACCAAATGTC 58.262 36.000 0.00 0.00 0.00 3.06
198 202 6.871844 TCAAGAACAATGAACCAAATGTCAA 58.128 32.000 0.00 0.00 0.00 3.18
201 205 8.614346 CAAGAACAATGAACCAAATGTCAATTT 58.386 29.630 0.00 0.00 36.39 1.82
213 217 7.076842 CAAATGTCAATTTGGAGATACGAGT 57.923 36.000 3.73 0.00 45.99 4.18
216 220 8.425577 AATGTCAATTTGGAGATACGAGTTAG 57.574 34.615 0.00 0.00 0.00 2.34
218 222 6.070995 TGTCAATTTGGAGATACGAGTTAGGT 60.071 38.462 0.00 0.00 0.00 3.08
219 223 6.255887 GTCAATTTGGAGATACGAGTTAGGTG 59.744 42.308 0.00 0.00 0.00 4.00
220 224 4.730949 TTTGGAGATACGAGTTAGGTGG 57.269 45.455 0.00 0.00 0.00 4.61
241 314 4.776837 TGGGGAAATCATGTGCTAATTTGT 59.223 37.500 0.00 0.00 0.00 2.83
370 479 4.363991 AATATCTGCCTCATCCCAAGAC 57.636 45.455 0.00 0.00 0.00 3.01
413 522 2.664185 CATCCGATCCAGCGCAGG 60.664 66.667 13.53 13.53 0.00 4.85
414 523 3.933722 ATCCGATCCAGCGCAGGG 61.934 66.667 19.70 15.42 0.00 4.45
641 762 1.172812 AAGCAGGCCAAGACGTTTCC 61.173 55.000 5.01 0.00 0.00 3.13
931 1064 2.549064 CCATCGGCATCCTTCATACA 57.451 50.000 0.00 0.00 0.00 2.29
932 1065 2.420642 CCATCGGCATCCTTCATACAG 58.579 52.381 0.00 0.00 0.00 2.74
933 1066 2.224378 CCATCGGCATCCTTCATACAGT 60.224 50.000 0.00 0.00 0.00 3.55
934 1067 3.006859 CCATCGGCATCCTTCATACAGTA 59.993 47.826 0.00 0.00 0.00 2.74
935 1068 3.728076 TCGGCATCCTTCATACAGTAC 57.272 47.619 0.00 0.00 0.00 2.73
936 1069 3.296854 TCGGCATCCTTCATACAGTACT 58.703 45.455 0.00 0.00 0.00 2.73
937 1070 3.068165 TCGGCATCCTTCATACAGTACTG 59.932 47.826 21.44 21.44 0.00 2.74
938 1071 3.134458 GGCATCCTTCATACAGTACTGC 58.866 50.000 22.90 4.80 0.00 4.40
939 1072 3.134458 GCATCCTTCATACAGTACTGCC 58.866 50.000 22.90 0.00 0.00 4.85
940 1073 3.432186 GCATCCTTCATACAGTACTGCCA 60.432 47.826 22.90 11.37 0.00 4.92
941 1074 4.375272 CATCCTTCATACAGTACTGCCAG 58.625 47.826 22.90 12.16 0.00 4.85
942 1075 2.766263 TCCTTCATACAGTACTGCCAGG 59.234 50.000 22.90 18.38 0.00 4.45
976 1109 1.676006 CAAGAAACGGACCAACAGCTT 59.324 47.619 0.00 0.00 0.00 3.74
1305 1444 3.201494 CGGATCGCTGACCTGTCT 58.799 61.111 0.00 0.00 0.00 3.41
1806 1948 0.833287 AGCTGTACGGCATGGAGATT 59.167 50.000 27.85 2.03 34.17 2.40
2313 2464 4.379082 GGTTAATTTGTGGTCATGTCGTCC 60.379 45.833 0.00 0.00 0.00 4.79
2314 2465 1.821216 ATTTGTGGTCATGTCGTCCC 58.179 50.000 0.00 0.00 0.00 4.46
2315 2466 0.470341 TTTGTGGTCATGTCGTCCCA 59.530 50.000 0.00 0.00 0.00 4.37
2357 2511 6.553476 AGCTGGGGTAATTAGTTTTGTTCTTT 59.447 34.615 0.00 0.00 0.00 2.52
2392 2548 6.790350 GTCATAATACATGTAAAATCGTGCCG 59.210 38.462 10.14 0.00 0.00 5.69
2438 2606 6.929606 GTGGAATATACCCTGTGAGATACAAC 59.070 42.308 0.00 0.00 39.20 3.32
2486 2654 2.556287 GAAGCAACTTGTCGGGCG 59.444 61.111 0.00 0.00 0.00 6.13
2487 2655 1.959226 GAAGCAACTTGTCGGGCGA 60.959 57.895 0.00 0.00 0.00 5.54
2647 6601 2.202362 CGTGCCTCGTCTCGTCTG 60.202 66.667 0.00 0.00 34.52 3.51
2648 6602 2.179517 GTGCCTCGTCTCGTCTGG 59.820 66.667 0.00 0.00 0.00 3.86
2649 6603 3.749064 TGCCTCGTCTCGTCTGGC 61.749 66.667 12.86 12.86 38.41 4.85
2652 6606 2.336478 CCTCGTCTCGTCTGGCACT 61.336 63.158 0.00 0.00 0.00 4.40
2653 6607 1.135731 CTCGTCTCGTCTGGCACTC 59.864 63.158 0.00 0.00 0.00 3.51
2654 6608 2.179517 CGTCTCGTCTGGCACTCC 59.820 66.667 0.00 0.00 0.00 3.85
2655 6609 2.574399 GTCTCGTCTGGCACTCCC 59.426 66.667 0.00 0.00 0.00 4.30
2656 6610 2.117423 TCTCGTCTGGCACTCCCA 59.883 61.111 0.00 0.00 42.79 4.37
2657 6611 1.305297 TCTCGTCTGGCACTCCCAT 60.305 57.895 0.00 0.00 44.33 4.00
2658 6612 1.153489 CTCGTCTGGCACTCCCATG 60.153 63.158 0.00 0.00 44.33 3.66
2659 6613 2.124983 CGTCTGGCACTCCCATGG 60.125 66.667 4.14 4.14 44.33 3.66
2660 6614 2.439156 GTCTGGCACTCCCATGGC 60.439 66.667 6.09 0.00 44.33 4.40
2664 6618 2.599597 GGCACTCCCATGGCAGAT 59.400 61.111 10.50 0.00 44.34 2.90
2665 6619 1.076485 GGCACTCCCATGGCAGATT 60.076 57.895 10.50 0.00 44.34 2.40
2707 6662 4.148838 ACGTTTCTTGGAAATGGAATGGA 58.851 39.130 14.18 0.00 0.00 3.41
2708 6663 4.586841 ACGTTTCTTGGAAATGGAATGGAA 59.413 37.500 14.18 0.00 0.00 3.53
2709 6664 5.245977 ACGTTTCTTGGAAATGGAATGGAAT 59.754 36.000 14.18 0.00 0.00 3.01
2710 6665 5.577945 CGTTTCTTGGAAATGGAATGGAATG 59.422 40.000 4.78 0.00 0.00 2.67
2711 6666 5.680594 TTCTTGGAAATGGAATGGAATGG 57.319 39.130 0.00 0.00 0.00 3.16
2712 6667 3.451902 TCTTGGAAATGGAATGGAATGGC 59.548 43.478 0.00 0.00 0.00 4.40
2756 6711 2.279517 GTAGATGCGGTCAGGGCG 60.280 66.667 0.00 0.00 0.00 6.13
2765 6721 3.315949 GTCAGGGCGTGGTGGGTA 61.316 66.667 7.42 0.00 0.00 3.69
2769 6725 3.078836 GGGCGTGGTGGGTAGCTA 61.079 66.667 0.00 0.00 0.00 3.32
2809 6766 4.741321 ACGACTCCCGGAAATAACATAA 57.259 40.909 0.73 0.00 43.93 1.90
2810 6767 4.690122 ACGACTCCCGGAAATAACATAAG 58.310 43.478 0.73 0.00 43.93 1.73
2811 6768 4.161001 ACGACTCCCGGAAATAACATAAGT 59.839 41.667 0.73 0.00 43.93 2.24
2812 6769 5.360714 ACGACTCCCGGAAATAACATAAGTA 59.639 40.000 0.73 0.00 43.93 2.24
2813 6770 5.689068 CGACTCCCGGAAATAACATAAGTAC 59.311 44.000 0.73 0.00 33.91 2.73
2814 6771 6.549433 ACTCCCGGAAATAACATAAGTACA 57.451 37.500 0.73 0.00 0.00 2.90
2815 6772 6.579865 ACTCCCGGAAATAACATAAGTACAG 58.420 40.000 0.73 0.00 0.00 2.74
2816 6773 6.155737 ACTCCCGGAAATAACATAAGTACAGT 59.844 38.462 0.73 0.00 0.00 3.55
2817 6774 7.342799 ACTCCCGGAAATAACATAAGTACAGTA 59.657 37.037 0.73 0.00 0.00 2.74
2818 6775 7.491682 TCCCGGAAATAACATAAGTACAGTAC 58.508 38.462 0.73 2.05 0.00 2.73
2819 6776 6.418819 CCCGGAAATAACATAAGTACAGTACG 59.581 42.308 0.73 0.00 0.00 3.67
2820 6777 6.974622 CCGGAAATAACATAAGTACAGTACGT 59.025 38.462 0.00 4.74 0.00 3.57
2821 6778 8.128582 CCGGAAATAACATAAGTACAGTACGTA 58.871 37.037 8.59 8.59 0.00 3.57
2879 6836 2.060050 TTGTGGTGACCCAAACGAAT 57.940 45.000 0.00 0.00 44.15 3.34
2900 6857 8.470805 ACGAATTAATCACTCTTCTGATGTACT 58.529 33.333 0.00 0.00 30.92 2.73
2901 6858 8.750416 CGAATTAATCACTCTTCTGATGTACTG 58.250 37.037 0.00 0.00 30.92 2.74
2902 6859 9.593134 GAATTAATCACTCTTCTGATGTACTGT 57.407 33.333 0.00 0.00 30.92 3.55
2971 6928 2.758327 ACAGGGACGCGCCATCTA 60.758 61.111 18.87 0.00 38.95 1.98
2977 6934 1.227263 GACGCGCCATCTACACCAT 60.227 57.895 5.73 0.00 0.00 3.55
3036 6993 0.895100 ACCATTTCGCCACACAGCAT 60.895 50.000 0.00 0.00 0.00 3.79
3066 7023 1.135721 GGCCACCGTATCGAAACTACT 59.864 52.381 0.00 0.00 0.00 2.57
3067 7024 2.417787 GGCCACCGTATCGAAACTACTT 60.418 50.000 0.00 0.00 0.00 2.24
3068 7025 2.856557 GCCACCGTATCGAAACTACTTC 59.143 50.000 0.00 0.00 0.00 3.01
3069 7026 3.442100 CCACCGTATCGAAACTACTTCC 58.558 50.000 0.00 0.00 0.00 3.46
3070 7027 3.119388 CCACCGTATCGAAACTACTTCCA 60.119 47.826 0.00 0.00 0.00 3.53
3071 7028 3.855950 CACCGTATCGAAACTACTTCCAC 59.144 47.826 0.00 0.00 0.00 4.02
3072 7029 3.507233 ACCGTATCGAAACTACTTCCACA 59.493 43.478 0.00 0.00 0.00 4.17
3073 7030 4.022068 ACCGTATCGAAACTACTTCCACAA 60.022 41.667 0.00 0.00 0.00 3.33
3074 7031 5.107133 CCGTATCGAAACTACTTCCACAAT 58.893 41.667 0.00 0.00 0.00 2.71
3075 7032 5.231568 CCGTATCGAAACTACTTCCACAATC 59.768 44.000 0.00 0.00 0.00 2.67
3076 7033 5.231568 CGTATCGAAACTACTTCCACAATCC 59.768 44.000 0.00 0.00 0.00 3.01
3077 7034 3.934068 TCGAAACTACTTCCACAATCCC 58.066 45.455 0.00 0.00 0.00 3.85
3078 7035 3.581332 TCGAAACTACTTCCACAATCCCT 59.419 43.478 0.00 0.00 0.00 4.20
3079 7036 3.933332 CGAAACTACTTCCACAATCCCTC 59.067 47.826 0.00 0.00 0.00 4.30
3080 7037 4.322801 CGAAACTACTTCCACAATCCCTCT 60.323 45.833 0.00 0.00 0.00 3.69
3081 7038 4.828072 AACTACTTCCACAATCCCTCTC 57.172 45.455 0.00 0.00 0.00 3.20
3082 7039 3.791320 ACTACTTCCACAATCCCTCTCA 58.209 45.455 0.00 0.00 0.00 3.27
3083 7040 4.168101 ACTACTTCCACAATCCCTCTCAA 58.832 43.478 0.00 0.00 0.00 3.02
3084 7041 4.785376 ACTACTTCCACAATCCCTCTCAAT 59.215 41.667 0.00 0.00 0.00 2.57
3085 7042 4.227864 ACTTCCACAATCCCTCTCAATC 57.772 45.455 0.00 0.00 0.00 2.67
3086 7043 3.848975 ACTTCCACAATCCCTCTCAATCT 59.151 43.478 0.00 0.00 0.00 2.40
3087 7044 4.290722 ACTTCCACAATCCCTCTCAATCTT 59.709 41.667 0.00 0.00 0.00 2.40
3088 7045 4.226427 TCCACAATCCCTCTCAATCTTG 57.774 45.455 0.00 0.00 0.00 3.02
3089 7046 3.588842 TCCACAATCCCTCTCAATCTTGT 59.411 43.478 0.00 0.00 0.00 3.16
3090 7047 3.944015 CCACAATCCCTCTCAATCTTGTC 59.056 47.826 0.00 0.00 0.00 3.18
3091 7048 4.324099 CCACAATCCCTCTCAATCTTGTCT 60.324 45.833 0.00 0.00 0.00 3.41
3092 7049 4.874966 CACAATCCCTCTCAATCTTGTCTC 59.125 45.833 0.00 0.00 0.00 3.36
3093 7050 4.782156 ACAATCCCTCTCAATCTTGTCTCT 59.218 41.667 0.00 0.00 0.00 3.10
3094 7051 5.104982 ACAATCCCTCTCAATCTTGTCTCTC 60.105 44.000 0.00 0.00 0.00 3.20
3095 7052 4.053009 TCCCTCTCAATCTTGTCTCTCA 57.947 45.455 0.00 0.00 0.00 3.27
3096 7053 4.420206 TCCCTCTCAATCTTGTCTCTCAA 58.580 43.478 0.00 0.00 34.61 3.02
3097 7054 4.840680 TCCCTCTCAATCTTGTCTCTCAAA 59.159 41.667 0.00 0.00 35.48 2.69
3098 7055 5.486775 TCCCTCTCAATCTTGTCTCTCAAAT 59.513 40.000 0.00 0.00 35.48 2.32
3099 7056 5.585445 CCCTCTCAATCTTGTCTCTCAAATG 59.415 44.000 0.00 0.00 35.48 2.32
3100 7057 5.585445 CCTCTCAATCTTGTCTCTCAAATGG 59.415 44.000 0.00 0.00 35.48 3.16
3101 7058 6.364568 TCTCAATCTTGTCTCTCAAATGGA 57.635 37.500 0.00 0.00 35.48 3.41
3102 7059 6.955364 TCTCAATCTTGTCTCTCAAATGGAT 58.045 36.000 0.00 0.00 35.48 3.41
3103 7060 6.822170 TCTCAATCTTGTCTCTCAAATGGATG 59.178 38.462 0.00 0.00 35.48 3.51
3104 7061 6.479006 TCAATCTTGTCTCTCAAATGGATGT 58.521 36.000 0.00 0.00 35.48 3.06
3105 7062 7.623630 TCAATCTTGTCTCTCAAATGGATGTA 58.376 34.615 0.00 0.00 35.48 2.29
3106 7063 7.767659 TCAATCTTGTCTCTCAAATGGATGTAG 59.232 37.037 0.00 0.00 35.48 2.74
3107 7064 5.982356 TCTTGTCTCTCAAATGGATGTAGG 58.018 41.667 0.00 0.00 35.48 3.18
3108 7065 5.721480 TCTTGTCTCTCAAATGGATGTAGGA 59.279 40.000 0.00 0.00 35.48 2.94
3109 7066 5.604758 TGTCTCTCAAATGGATGTAGGAG 57.395 43.478 0.00 0.00 0.00 3.69
3110 7067 5.026121 TGTCTCTCAAATGGATGTAGGAGT 58.974 41.667 0.00 0.00 0.00 3.85
3111 7068 6.194967 TGTCTCTCAAATGGATGTAGGAGTA 58.805 40.000 0.00 0.00 0.00 2.59
3112 7069 6.841229 TGTCTCTCAAATGGATGTAGGAGTAT 59.159 38.462 0.00 0.00 0.00 2.12
3113 7070 7.014711 TGTCTCTCAAATGGATGTAGGAGTATC 59.985 40.741 0.00 0.00 0.00 2.24
3114 7071 7.232534 GTCTCTCAAATGGATGTAGGAGTATCT 59.767 40.741 0.00 0.00 33.73 1.98
3115 7072 8.448816 TCTCTCAAATGGATGTAGGAGTATCTA 58.551 37.037 0.00 0.00 33.73 1.98
3116 7073 9.083422 CTCTCAAATGGATGTAGGAGTATCTAA 57.917 37.037 0.00 0.00 33.73 2.10
3117 7074 8.861086 TCTCAAATGGATGTAGGAGTATCTAAC 58.139 37.037 0.00 0.00 33.73 2.34
3118 7075 8.783660 TCAAATGGATGTAGGAGTATCTAACT 57.216 34.615 0.00 0.00 42.80 2.24
3119 7076 9.213777 TCAAATGGATGTAGGAGTATCTAACTT 57.786 33.333 0.00 0.00 39.07 2.66
3120 7077 9.265901 CAAATGGATGTAGGAGTATCTAACTTG 57.734 37.037 0.00 0.00 39.07 3.16
3121 7078 8.554490 AATGGATGTAGGAGTATCTAACTTGT 57.446 34.615 0.00 0.00 39.07 3.16
3122 7079 7.584122 TGGATGTAGGAGTATCTAACTTGTC 57.416 40.000 0.00 0.00 39.07 3.18
3123 7080 6.550108 TGGATGTAGGAGTATCTAACTTGTCC 59.450 42.308 0.00 0.00 39.07 4.02
3124 7081 6.778559 GGATGTAGGAGTATCTAACTTGTCCT 59.221 42.308 0.00 0.00 39.07 3.85
3125 7082 7.288158 GGATGTAGGAGTATCTAACTTGTCCTT 59.712 40.741 0.00 0.00 39.07 3.36
3126 7083 7.642082 TGTAGGAGTATCTAACTTGTCCTTC 57.358 40.000 0.00 0.00 39.07 3.46
3127 7084 7.179966 TGTAGGAGTATCTAACTTGTCCTTCA 58.820 38.462 0.00 0.00 39.07 3.02
3128 7085 7.672660 TGTAGGAGTATCTAACTTGTCCTTCAA 59.327 37.037 0.00 0.00 39.07 2.69
3129 7086 7.554959 AGGAGTATCTAACTTGTCCTTCAAA 57.445 36.000 0.00 0.00 39.07 2.69
3130 7087 8.152023 AGGAGTATCTAACTTGTCCTTCAAAT 57.848 34.615 0.00 0.00 39.07 2.32
3131 7088 8.043710 AGGAGTATCTAACTTGTCCTTCAAATG 58.956 37.037 0.00 0.00 39.07 2.32
3132 7089 7.201652 GGAGTATCTAACTTGTCCTTCAAATGC 60.202 40.741 0.00 0.00 39.07 3.56
3133 7090 7.398024 AGTATCTAACTTGTCCTTCAAATGCT 58.602 34.615 0.00 0.00 33.35 3.79
3134 7091 8.540388 AGTATCTAACTTGTCCTTCAAATGCTA 58.460 33.333 0.00 0.00 33.35 3.49
3135 7092 7.856145 ATCTAACTTGTCCTTCAAATGCTAG 57.144 36.000 0.00 0.00 35.48 3.42
3136 7093 7.004555 TCTAACTTGTCCTTCAAATGCTAGA 57.995 36.000 0.00 0.00 35.48 2.43
3137 7094 7.624549 TCTAACTTGTCCTTCAAATGCTAGAT 58.375 34.615 0.00 0.00 35.48 1.98
3138 7095 8.758829 TCTAACTTGTCCTTCAAATGCTAGATA 58.241 33.333 0.00 0.00 35.48 1.98
3139 7096 7.617041 AACTTGTCCTTCAAATGCTAGATAC 57.383 36.000 0.00 0.00 35.48 2.24
3140 7097 6.711277 ACTTGTCCTTCAAATGCTAGATACA 58.289 36.000 0.00 0.00 35.48 2.29
3141 7098 7.341805 ACTTGTCCTTCAAATGCTAGATACAT 58.658 34.615 0.00 0.00 35.48 2.29
3142 7099 7.497249 ACTTGTCCTTCAAATGCTAGATACATC 59.503 37.037 0.00 0.00 35.48 3.06
3143 7100 6.291377 TGTCCTTCAAATGCTAGATACATCC 58.709 40.000 0.00 0.00 0.00 3.51
3144 7101 6.126796 TGTCCTTCAAATGCTAGATACATCCA 60.127 38.462 0.00 0.00 0.00 3.41
3145 7102 6.939163 GTCCTTCAAATGCTAGATACATCCAT 59.061 38.462 0.00 0.00 0.00 3.41
3146 7103 7.446625 GTCCTTCAAATGCTAGATACATCCATT 59.553 37.037 0.00 0.00 0.00 3.16
3147 7104 8.000709 TCCTTCAAATGCTAGATACATCCATTT 58.999 33.333 0.00 0.00 36.77 2.32
3148 7105 9.288576 CCTTCAAATGCTAGATACATCCATTTA 57.711 33.333 0.00 0.00 35.16 1.40
3155 7112 9.851686 ATGCTAGATACATCCATTTAAGAAACA 57.148 29.630 0.00 0.00 0.00 2.83
3156 7113 9.679661 TGCTAGATACATCCATTTAAGAAACAA 57.320 29.630 0.00 0.00 0.00 2.83
3159 7116 8.814038 AGATACATCCATTTAAGAAACAAGCT 57.186 30.769 0.00 0.00 0.00 3.74
3160 7117 9.247861 AGATACATCCATTTAAGAAACAAGCTT 57.752 29.630 0.00 0.00 0.00 3.74
3161 7118 9.860898 GATACATCCATTTAAGAAACAAGCTTT 57.139 29.630 0.00 0.00 0.00 3.51
3163 7120 8.962884 ACATCCATTTAAGAAACAAGCTTTTT 57.037 26.923 0.00 1.05 0.00 1.94
3182 7139 4.525912 TTTTGAACGGAGGGAGTACTAC 57.474 45.455 0.00 0.00 0.00 2.73
3183 7140 2.885135 TGAACGGAGGGAGTACTACA 57.115 50.000 7.57 0.00 0.00 2.74
3184 7141 2.440409 TGAACGGAGGGAGTACTACAC 58.560 52.381 7.57 0.02 0.00 2.90
3185 7142 2.224843 TGAACGGAGGGAGTACTACACA 60.225 50.000 7.57 0.00 0.00 3.72
3186 7143 2.822707 ACGGAGGGAGTACTACACAT 57.177 50.000 7.57 0.00 0.00 3.21
3187 7144 3.097342 ACGGAGGGAGTACTACACATT 57.903 47.619 7.57 0.00 0.00 2.71
3188 7145 3.438183 ACGGAGGGAGTACTACACATTT 58.562 45.455 7.57 0.00 0.00 2.32
3189 7146 4.603131 ACGGAGGGAGTACTACACATTTA 58.397 43.478 7.57 0.00 0.00 1.40
3190 7147 5.206587 ACGGAGGGAGTACTACACATTTAT 58.793 41.667 7.57 0.00 0.00 1.40
3191 7148 5.068723 ACGGAGGGAGTACTACACATTTATG 59.931 44.000 7.57 0.00 0.00 1.90
3192 7149 5.301045 CGGAGGGAGTACTACACATTTATGA 59.699 44.000 7.57 0.00 0.00 2.15
3193 7150 6.515200 CGGAGGGAGTACTACACATTTATGAG 60.515 46.154 7.57 0.00 0.00 2.90
3194 7151 6.163135 AGGGAGTACTACACATTTATGAGC 57.837 41.667 7.57 0.00 0.00 4.26
3195 7152 5.661312 AGGGAGTACTACACATTTATGAGCA 59.339 40.000 7.57 0.00 0.00 4.26
3196 7153 5.986135 GGGAGTACTACACATTTATGAGCAG 59.014 44.000 7.57 0.00 0.00 4.24
3197 7154 6.183360 GGGAGTACTACACATTTATGAGCAGA 60.183 42.308 7.57 0.00 0.00 4.26
3198 7155 7.265673 GGAGTACTACACATTTATGAGCAGAA 58.734 38.462 0.00 0.00 0.00 3.02
3199 7156 7.928706 GGAGTACTACACATTTATGAGCAGAAT 59.071 37.037 0.00 0.00 0.00 2.40
3200 7157 9.319143 GAGTACTACACATTTATGAGCAGAATT 57.681 33.333 0.00 0.00 0.00 2.17
3201 7158 9.672673 AGTACTACACATTTATGAGCAGAATTT 57.327 29.630 0.00 0.00 0.00 1.82
3207 7164 9.090692 ACACATTTATGAGCAGAATTTAAATGC 57.909 29.630 12.97 2.72 40.99 3.56
3239 7196 8.851541 TGTACGTTATATTCCCTTTGTTTTCT 57.148 30.769 0.00 0.00 0.00 2.52
3240 7197 9.941325 TGTACGTTATATTCCCTTTGTTTTCTA 57.059 29.630 0.00 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 6.827641 TCTTTTCGAATCAAACAATAGGACG 58.172 36.000 0.00 0.00 0.00 4.79
51 52 3.033659 TGGTAAACCCCTGCAGAAAAA 57.966 42.857 17.39 0.00 34.29 1.94
52 53 2.757894 TGGTAAACCCCTGCAGAAAA 57.242 45.000 17.39 0.00 34.29 2.29
56 57 1.534729 GACTTGGTAAACCCCTGCAG 58.465 55.000 6.78 6.78 34.29 4.41
58 59 0.250597 ACGACTTGGTAAACCCCTGC 60.251 55.000 0.00 0.00 34.29 4.85
59 60 2.265589 AACGACTTGGTAAACCCCTG 57.734 50.000 0.00 0.00 34.29 4.45
60 61 2.440627 AGAAACGACTTGGTAAACCCCT 59.559 45.455 0.00 0.00 34.29 4.79
70 73 6.093404 TCATGAGCTAGTTAGAAACGACTTG 58.907 40.000 0.00 0.00 36.23 3.16
122 126 6.377327 AACTGACATTTGGTTCTGTTGTAG 57.623 37.500 0.00 0.00 0.00 2.74
128 132 4.274950 ACGGTAAACTGACATTTGGTTCTG 59.725 41.667 0.00 0.00 0.00 3.02
136 140 1.802365 GCCGAACGGTAAACTGACATT 59.198 47.619 14.63 0.00 37.65 2.71
196 200 5.523916 CCACCTAACTCGTATCTCCAAATTG 59.476 44.000 0.00 0.00 0.00 2.32
198 202 4.101119 CCCACCTAACTCGTATCTCCAAAT 59.899 45.833 0.00 0.00 0.00 2.32
201 205 2.662866 CCCACCTAACTCGTATCTCCA 58.337 52.381 0.00 0.00 0.00 3.86
210 214 3.947834 CACATGATTTCCCCACCTAACTC 59.052 47.826 0.00 0.00 0.00 3.01
211 215 3.877735 GCACATGATTTCCCCACCTAACT 60.878 47.826 0.00 0.00 0.00 2.24
212 216 2.427095 GCACATGATTTCCCCACCTAAC 59.573 50.000 0.00 0.00 0.00 2.34
213 217 2.311542 AGCACATGATTTCCCCACCTAA 59.688 45.455 0.00 0.00 0.00 2.69
216 220 2.435372 TAGCACATGATTTCCCCACC 57.565 50.000 0.00 0.00 0.00 4.61
218 222 4.776837 ACAAATTAGCACATGATTTCCCCA 59.223 37.500 0.00 0.00 0.00 4.96
219 223 5.343307 ACAAATTAGCACATGATTTCCCC 57.657 39.130 0.00 0.00 0.00 4.81
220 224 7.333528 TCTACAAATTAGCACATGATTTCCC 57.666 36.000 0.00 0.00 0.00 3.97
285 386 3.137544 TGGCGAGGGGTAATAATTCATGT 59.862 43.478 0.00 0.00 0.00 3.21
370 479 9.455847 GCTTATCTAGATTGCCTTGTATTTTTG 57.544 33.333 11.25 0.00 0.00 2.44
413 522 2.838286 CAGTGAAGACTGCTCTGCC 58.162 57.895 0.00 0.00 43.24 4.85
535 644 2.359975 CCTTCCCCTTGTGGTCGC 60.360 66.667 0.00 0.00 0.00 5.19
536 645 2.351276 CCCTTCCCCTTGTGGTCG 59.649 66.667 0.00 0.00 0.00 4.79
537 646 2.763902 CCCCTTCCCCTTGTGGTC 59.236 66.667 0.00 0.00 0.00 4.02
538 647 2.863988 CCCCCTTCCCCTTGTGGT 60.864 66.667 0.00 0.00 0.00 4.16
663 784 3.120121 GTCAGCGTCAAATCAAAATGTGC 59.880 43.478 0.00 0.00 0.00 4.57
923 1056 2.093500 TGCCTGGCAGTACTGTATGAAG 60.093 50.000 23.44 13.24 33.32 3.02
924 1057 1.905894 TGCCTGGCAGTACTGTATGAA 59.094 47.619 23.44 3.33 33.32 2.57
925 1058 1.567357 TGCCTGGCAGTACTGTATGA 58.433 50.000 23.44 5.12 33.32 2.15
936 1069 1.252904 GCTTGGAAATCTGCCTGGCA 61.253 55.000 21.96 21.96 36.92 4.92
937 1070 1.514553 GCTTGGAAATCTGCCTGGC 59.485 57.895 12.87 12.87 0.00 4.85
938 1071 0.612732 TGGCTTGGAAATCTGCCTGG 60.613 55.000 0.00 0.00 45.11 4.45
939 1072 1.203994 CTTGGCTTGGAAATCTGCCTG 59.796 52.381 0.00 0.00 45.11 4.85
940 1073 1.076024 TCTTGGCTTGGAAATCTGCCT 59.924 47.619 0.00 0.00 45.11 4.75
941 1074 1.549203 TCTTGGCTTGGAAATCTGCC 58.451 50.000 0.00 0.00 45.10 4.85
942 1075 3.320626 GTTTCTTGGCTTGGAAATCTGC 58.679 45.455 0.00 0.00 34.60 4.26
2313 2464 2.982130 CCAACGAGGGAGGAGTGG 59.018 66.667 0.00 0.00 0.00 4.00
2314 2465 2.266055 GCCAACGAGGGAGGAGTG 59.734 66.667 0.00 0.00 38.09 3.51
2315 2466 2.203788 TGCCAACGAGGGAGGAGT 60.204 61.111 0.00 0.00 38.09 3.85
2392 2548 3.435671 ACTGCGTATTAACTGGCTCAAAC 59.564 43.478 0.00 0.00 0.00 2.93
2486 2654 3.430333 TTCCTTGCAACTTCCGTTTTC 57.570 42.857 0.00 0.00 0.00 2.29
2487 2655 4.400529 AATTCCTTGCAACTTCCGTTTT 57.599 36.364 0.00 0.00 0.00 2.43
2634 6588 2.179517 GTGCCAGACGAGACGAGG 59.820 66.667 0.00 0.00 0.00 4.63
2636 6590 2.333417 GGAGTGCCAGACGAGACGA 61.333 63.158 0.00 0.00 0.00 4.20
2637 6591 2.179517 GGAGTGCCAGACGAGACG 59.820 66.667 0.00 0.00 0.00 4.18
2639 6593 1.305297 ATGGGAGTGCCAGACGAGA 60.305 57.895 10.00 0.00 35.15 4.04
2647 6601 1.076485 AATCTGCCATGGGAGTGCC 60.076 57.895 30.00 5.49 35.04 5.01
2648 6602 2.012902 GCAATCTGCCATGGGAGTGC 62.013 60.000 30.00 27.80 44.03 4.40
2649 6603 0.681887 TGCAATCTGCCATGGGAGTG 60.682 55.000 30.00 22.98 44.23 3.51
2652 6606 0.966875 GTGTGCAATCTGCCATGGGA 60.967 55.000 15.13 10.50 44.23 4.37
2653 6607 1.514087 GTGTGCAATCTGCCATGGG 59.486 57.895 15.13 0.00 44.23 4.00
2654 6608 1.138036 CGTGTGCAATCTGCCATGG 59.862 57.895 7.63 7.63 44.23 3.66
2655 6609 1.515519 GCGTGTGCAATCTGCCATG 60.516 57.895 0.00 1.41 44.23 3.66
2656 6610 2.879907 GCGTGTGCAATCTGCCAT 59.120 55.556 0.00 0.00 44.23 4.40
2707 6662 0.190815 AGGTTGTTTCCCTGGCCATT 59.809 50.000 5.51 0.00 0.00 3.16
2708 6663 0.542702 CAGGTTGTTTCCCTGGCCAT 60.543 55.000 5.51 0.00 44.77 4.40
2709 6664 1.152567 CAGGTTGTTTCCCTGGCCA 60.153 57.895 4.71 4.71 44.77 5.36
2710 6665 3.777556 CAGGTTGTTTCCCTGGCC 58.222 61.111 0.00 0.00 44.77 5.36
2756 6711 4.216411 TCTTTGAATAGCTACCCACCAC 57.784 45.455 0.00 0.00 0.00 4.16
2765 6721 6.314896 CGTTCATCCTCTTTCTTTGAATAGCT 59.685 38.462 0.00 0.00 0.00 3.32
2769 6725 6.234177 AGTCGTTCATCCTCTTTCTTTGAAT 58.766 36.000 0.00 0.00 0.00 2.57
2809 6766 9.469807 GTAGTACTCATGTATACGTACTGTACT 57.530 37.037 24.31 24.31 41.68 2.73
2810 6767 9.469807 AGTAGTACTCATGTATACGTACTGTAC 57.530 37.037 21.80 19.58 41.68 2.90
2811 6768 9.684448 GAGTAGTACTCATGTATACGTACTGTA 57.316 37.037 22.85 12.49 44.45 2.74
2812 6769 8.586570 GAGTAGTACTCATGTATACGTACTGT 57.413 38.462 22.85 13.73 44.45 3.55
2879 6836 9.244292 AGTACAGTACATCAGAAGAGTGATTAA 57.756 33.333 13.37 0.00 34.81 1.40
2900 6857 9.715121 AGTCATCCTTTCGTTTTTATAAGTACA 57.285 29.630 0.00 0.00 0.00 2.90
2901 6858 9.968743 CAGTCATCCTTTCGTTTTTATAAGTAC 57.031 33.333 0.00 0.00 0.00 2.73
2902 6859 9.158233 CCAGTCATCCTTTCGTTTTTATAAGTA 57.842 33.333 0.00 0.00 0.00 2.24
2903 6860 7.664318 ACCAGTCATCCTTTCGTTTTTATAAGT 59.336 33.333 0.00 0.00 0.00 2.24
2904 6861 8.040716 ACCAGTCATCCTTTCGTTTTTATAAG 57.959 34.615 0.00 0.00 0.00 1.73
3036 6993 2.280933 CGGTGGCCGTTTGGTGTA 60.281 61.111 0.00 0.00 42.73 2.90
3053 7010 5.522824 GGGATTGTGGAAGTAGTTTCGATAC 59.477 44.000 0.00 0.00 36.62 2.24
3066 7023 4.043310 ACAAGATTGAGAGGGATTGTGGAA 59.957 41.667 0.00 0.00 30.20 3.53
3067 7024 3.588842 ACAAGATTGAGAGGGATTGTGGA 59.411 43.478 0.00 0.00 30.20 4.02
3068 7025 3.944015 GACAAGATTGAGAGGGATTGTGG 59.056 47.826 0.00 0.00 31.44 4.17
3069 7026 4.841422 AGACAAGATTGAGAGGGATTGTG 58.159 43.478 0.00 0.00 31.44 3.33
3070 7027 4.782156 AGAGACAAGATTGAGAGGGATTGT 59.218 41.667 0.00 0.00 33.82 2.71
3071 7028 5.105023 TGAGAGACAAGATTGAGAGGGATTG 60.105 44.000 0.00 0.00 0.00 2.67
3072 7029 5.028802 TGAGAGACAAGATTGAGAGGGATT 58.971 41.667 0.00 0.00 0.00 3.01
3073 7030 4.618635 TGAGAGACAAGATTGAGAGGGAT 58.381 43.478 0.00 0.00 0.00 3.85
3074 7031 4.053009 TGAGAGACAAGATTGAGAGGGA 57.947 45.455 0.00 0.00 0.00 4.20
3075 7032 4.815533 TTGAGAGACAAGATTGAGAGGG 57.184 45.455 0.00 0.00 34.20 4.30
3076 7033 5.585445 CCATTTGAGAGACAAGATTGAGAGG 59.415 44.000 0.00 0.00 39.77 3.69
3077 7034 6.404708 TCCATTTGAGAGACAAGATTGAGAG 58.595 40.000 0.00 0.00 39.77 3.20
3078 7035 6.364568 TCCATTTGAGAGACAAGATTGAGA 57.635 37.500 0.00 0.00 39.77 3.27
3079 7036 6.598457 ACATCCATTTGAGAGACAAGATTGAG 59.402 38.462 0.00 0.00 39.77 3.02
3080 7037 6.479006 ACATCCATTTGAGAGACAAGATTGA 58.521 36.000 0.00 0.00 39.77 2.57
3081 7038 6.754702 ACATCCATTTGAGAGACAAGATTG 57.245 37.500 0.00 0.00 39.77 2.67
3082 7039 7.052873 CCTACATCCATTTGAGAGACAAGATT 58.947 38.462 0.00 0.00 39.77 2.40
3083 7040 6.385176 TCCTACATCCATTTGAGAGACAAGAT 59.615 38.462 0.00 0.00 39.77 2.40
3084 7041 5.721480 TCCTACATCCATTTGAGAGACAAGA 59.279 40.000 0.00 0.00 39.77 3.02
3085 7042 5.982356 TCCTACATCCATTTGAGAGACAAG 58.018 41.667 0.00 0.00 39.77 3.16
3086 7043 5.485353 ACTCCTACATCCATTTGAGAGACAA 59.515 40.000 0.00 0.00 36.65 3.18
3087 7044 5.026121 ACTCCTACATCCATTTGAGAGACA 58.974 41.667 0.00 0.00 0.00 3.41
3088 7045 5.606348 ACTCCTACATCCATTTGAGAGAC 57.394 43.478 0.00 0.00 0.00 3.36
3089 7046 7.301420 AGATACTCCTACATCCATTTGAGAGA 58.699 38.462 0.00 0.00 0.00 3.10
3090 7047 7.537596 AGATACTCCTACATCCATTTGAGAG 57.462 40.000 0.00 0.00 0.00 3.20
3091 7048 8.861086 GTTAGATACTCCTACATCCATTTGAGA 58.139 37.037 0.00 0.00 0.00 3.27
3092 7049 8.865090 AGTTAGATACTCCTACATCCATTTGAG 58.135 37.037 0.00 0.00 28.23 3.02
3093 7050 8.783660 AGTTAGATACTCCTACATCCATTTGA 57.216 34.615 0.00 0.00 28.23 2.69
3094 7051 9.265901 CAAGTTAGATACTCCTACATCCATTTG 57.734 37.037 0.00 0.00 35.54 2.32
3095 7052 8.993424 ACAAGTTAGATACTCCTACATCCATTT 58.007 33.333 0.00 0.00 35.54 2.32
3096 7053 8.554490 ACAAGTTAGATACTCCTACATCCATT 57.446 34.615 0.00 0.00 35.54 3.16
3097 7054 7.233757 GGACAAGTTAGATACTCCTACATCCAT 59.766 40.741 0.00 0.00 35.54 3.41
3098 7055 6.550108 GGACAAGTTAGATACTCCTACATCCA 59.450 42.308 0.00 0.00 35.54 3.41
3099 7056 6.778559 AGGACAAGTTAGATACTCCTACATCC 59.221 42.308 0.00 0.00 35.54 3.51
3100 7057 7.826918 AGGACAAGTTAGATACTCCTACATC 57.173 40.000 0.00 0.00 35.54 3.06
3101 7058 7.839705 TGAAGGACAAGTTAGATACTCCTACAT 59.160 37.037 0.00 0.00 35.54 2.29
3102 7059 7.179966 TGAAGGACAAGTTAGATACTCCTACA 58.820 38.462 0.00 0.00 35.54 2.74
3103 7060 7.642082 TGAAGGACAAGTTAGATACTCCTAC 57.358 40.000 0.00 0.00 35.54 3.18
3104 7061 8.660295 TTTGAAGGACAAGTTAGATACTCCTA 57.340 34.615 0.00 0.00 39.77 2.94
3105 7062 7.554959 TTTGAAGGACAAGTTAGATACTCCT 57.445 36.000 0.00 0.00 39.77 3.69
3106 7063 7.201652 GCATTTGAAGGACAAGTTAGATACTCC 60.202 40.741 0.00 0.00 39.77 3.85
3107 7064 7.550906 AGCATTTGAAGGACAAGTTAGATACTC 59.449 37.037 0.00 0.00 39.77 2.59
3108 7065 7.398024 AGCATTTGAAGGACAAGTTAGATACT 58.602 34.615 0.00 0.00 39.77 2.12
3109 7066 7.617041 AGCATTTGAAGGACAAGTTAGATAC 57.383 36.000 0.00 0.00 39.77 2.24
3110 7067 8.758829 TCTAGCATTTGAAGGACAAGTTAGATA 58.241 33.333 0.00 0.00 39.77 1.98
3111 7068 7.624549 TCTAGCATTTGAAGGACAAGTTAGAT 58.375 34.615 0.00 0.00 39.77 1.98
3112 7069 7.004555 TCTAGCATTTGAAGGACAAGTTAGA 57.995 36.000 0.00 0.00 39.77 2.10
3113 7070 7.856145 ATCTAGCATTTGAAGGACAAGTTAG 57.144 36.000 0.00 0.00 39.77 2.34
3114 7071 8.318412 TGTATCTAGCATTTGAAGGACAAGTTA 58.682 33.333 0.00 0.00 39.77 2.24
3115 7072 7.168219 TGTATCTAGCATTTGAAGGACAAGTT 58.832 34.615 0.00 0.00 39.77 2.66
3116 7073 6.711277 TGTATCTAGCATTTGAAGGACAAGT 58.289 36.000 0.00 0.00 39.77 3.16
3117 7074 7.041508 GGATGTATCTAGCATTTGAAGGACAAG 60.042 40.741 0.00 0.00 39.77 3.16
3118 7075 6.767902 GGATGTATCTAGCATTTGAAGGACAA 59.232 38.462 0.00 0.00 36.65 3.18
3119 7076 6.126796 TGGATGTATCTAGCATTTGAAGGACA 60.127 38.462 0.00 0.00 0.00 4.02
3120 7077 6.291377 TGGATGTATCTAGCATTTGAAGGAC 58.709 40.000 0.00 0.00 0.00 3.85
3121 7078 6.499106 TGGATGTATCTAGCATTTGAAGGA 57.501 37.500 0.00 0.00 0.00 3.36
3122 7079 7.756395 AATGGATGTATCTAGCATTTGAAGG 57.244 36.000 0.00 0.00 0.00 3.46
3129 7086 9.851686 TGTTTCTTAAATGGATGTATCTAGCAT 57.148 29.630 0.00 0.00 0.00 3.79
3130 7087 9.679661 TTGTTTCTTAAATGGATGTATCTAGCA 57.320 29.630 0.00 0.00 0.00 3.49
3133 7090 9.905713 AGCTTGTTTCTTAAATGGATGTATCTA 57.094 29.630 0.00 0.00 0.00 1.98
3134 7091 8.814038 AGCTTGTTTCTTAAATGGATGTATCT 57.186 30.769 0.00 0.00 0.00 1.98
3135 7092 9.860898 AAAGCTTGTTTCTTAAATGGATGTATC 57.139 29.630 0.00 0.00 0.00 2.24
3138 7095 8.962884 AAAAAGCTTGTTTCTTAAATGGATGT 57.037 26.923 0.00 0.00 0.00 3.06
3160 7117 4.344679 TGTAGTACTCCCTCCGTTCAAAAA 59.655 41.667 0.00 0.00 0.00 1.94
3161 7118 3.896888 TGTAGTACTCCCTCCGTTCAAAA 59.103 43.478 0.00 0.00 0.00 2.44
3162 7119 3.256631 GTGTAGTACTCCCTCCGTTCAAA 59.743 47.826 0.00 0.00 0.00 2.69
3163 7120 2.821969 GTGTAGTACTCCCTCCGTTCAA 59.178 50.000 0.00 0.00 0.00 2.69
3164 7121 2.224843 TGTGTAGTACTCCCTCCGTTCA 60.225 50.000 0.00 0.00 0.00 3.18
3165 7122 2.440409 TGTGTAGTACTCCCTCCGTTC 58.560 52.381 0.00 0.00 0.00 3.95
3166 7123 2.592102 TGTGTAGTACTCCCTCCGTT 57.408 50.000 0.00 0.00 0.00 4.44
3167 7124 2.822707 ATGTGTAGTACTCCCTCCGT 57.177 50.000 0.00 0.00 0.00 4.69
3168 7125 5.301045 TCATAAATGTGTAGTACTCCCTCCG 59.699 44.000 0.00 0.00 0.00 4.63
3169 7126 6.726490 TCATAAATGTGTAGTACTCCCTCC 57.274 41.667 0.00 0.00 0.00 4.30
3170 7127 6.183360 TGCTCATAAATGTGTAGTACTCCCTC 60.183 42.308 0.00 0.00 0.00 4.30
3171 7128 5.661312 TGCTCATAAATGTGTAGTACTCCCT 59.339 40.000 0.00 0.00 0.00 4.20
3172 7129 5.914033 TGCTCATAAATGTGTAGTACTCCC 58.086 41.667 0.00 0.00 0.00 4.30
3173 7130 6.806751 TCTGCTCATAAATGTGTAGTACTCC 58.193 40.000 0.00 0.00 36.09 3.85
3174 7131 8.879342 ATTCTGCTCATAAATGTGTAGTACTC 57.121 34.615 0.00 0.00 36.09 2.59
3175 7132 9.672673 AAATTCTGCTCATAAATGTGTAGTACT 57.327 29.630 0.00 0.00 36.09 2.73
3181 7138 9.090692 GCATTTAAATTCTGCTCATAAATGTGT 57.909 29.630 14.44 0.00 42.08 3.72
3182 7139 9.309516 AGCATTTAAATTCTGCTCATAAATGTG 57.690 29.630 8.63 0.00 42.35 3.21
3213 7170 9.457436 AGAAAACAAAGGGAATATAACGTACAT 57.543 29.630 0.00 0.00 0.00 2.29
3214 7171 8.851541 AGAAAACAAAGGGAATATAACGTACA 57.148 30.769 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.