Multiple sequence alignment - TraesCS2B01G308300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G308300 chr2B 100.000 3293 0 0 1 3293 441082061 441078769 0.000000e+00 6082.0
1 TraesCS2B01G308300 chr2D 93.379 1314 65 16 386 1685 371926402 371925097 0.000000e+00 1925.0
2 TraesCS2B01G308300 chr2D 94.745 666 24 4 2628 3293 371923640 371922986 0.000000e+00 1026.0
3 TraesCS2B01G308300 chr2D 94.953 634 28 2 1760 2391 371924971 371924340 0.000000e+00 990.0
4 TraesCS2B01G308300 chr2D 94.355 372 21 0 1 372 371928462 371928091 3.690000e-159 571.0
5 TraesCS2B01G308300 chr2A 93.523 1158 54 8 543 1685 502628313 502627162 0.000000e+00 1703.0
6 TraesCS2B01G308300 chr2A 93.324 734 34 10 1680 2401 502627140 502626410 0.000000e+00 1070.0
7 TraesCS2B01G308300 chr2A 97.260 584 16 0 2710 3293 502625812 502625229 0.000000e+00 990.0
8 TraesCS2B01G308300 chr2A 94.220 173 9 1 1 173 502628606 502628435 2.520000e-66 263.0
9 TraesCS2B01G308300 chr2A 95.690 116 5 0 352 467 502628432 502628317 1.560000e-43 187.0
10 TraesCS2B01G308300 chr2A 78.277 267 31 17 2429 2676 502626064 502625806 2.650000e-31 147.0
11 TraesCS2B01G308300 chr2A 85.484 62 8 1 169 230 528653964 528654024 2.740000e-06 63.9
12 TraesCS2B01G308300 chr6D 88.710 62 6 1 169 230 238299036 238298976 1.270000e-09 75.0
13 TraesCS2B01G308300 chr1B 85.915 71 4 4 169 235 631519885 631519817 1.640000e-08 71.3
14 TraesCS2B01G308300 chr7B 86.667 60 7 1 177 235 212525802 212525743 7.630000e-07 65.8
15 TraesCS2B01G308300 chr4A 100.000 33 0 0 192 224 57013091 57013123 9.870000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G308300 chr2B 441078769 441082061 3292 True 6082.000000 6082 100.000 1 3293 1 chr2B.!!$R1 3292
1 TraesCS2B01G308300 chr2D 371922986 371928462 5476 True 1128.000000 1925 94.358 1 3293 4 chr2D.!!$R1 3292
2 TraesCS2B01G308300 chr2A 502625229 502628606 3377 True 726.666667 1703 92.049 1 3293 6 chr2A.!!$R1 3292

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
398 2074 0.541863 CCGCCTACTCCAAGTCCAAT 59.458 55.0 0.0 0.0 0.0 3.16 F
1552 3237 0.109342 CTGAAGACCACAGTGCCCTT 59.891 55.0 0.0 0.1 0.0 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1833 3598 0.252197 CCCTCGGGTCCAAACCTAAG 59.748 60.0 0.00 0.0 45.66 2.18 R
2425 4210 0.109597 CGGTGGCATCTGCAACTTTC 60.110 55.0 9.45 0.0 44.30 2.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.895889 ACGACTATCTCTGGAATGGATCAA 59.104 41.667 0.00 0.00 0.00 2.57
97 98 3.016736 AGATAGTGGAAAATGGTTGCGG 58.983 45.455 0.00 0.00 0.00 5.69
137 138 6.398918 TGGAGTTTGATCTCTAAGCACTTAC 58.601 40.000 0.00 0.00 35.11 2.34
144 145 7.435068 TGATCTCTAAGCACTTACCAAAAAC 57.565 36.000 0.00 0.00 0.00 2.43
147 148 7.023197 TCTCTAAGCACTTACCAAAAACAAC 57.977 36.000 0.00 0.00 0.00 3.32
217 218 3.806521 GGACTCAATGTGATCTTGGATCG 59.193 47.826 0.00 0.00 0.00 3.69
249 250 8.718656 AGATAAAATCTATGTCCTTAGCCTTGT 58.281 33.333 0.00 0.00 38.00 3.16
254 255 5.674525 TCTATGTCCTTAGCCTTGTCAATG 58.325 41.667 0.00 0.00 0.00 2.82
283 284 1.075374 TGAAGAATTGGGGGTCACCAG 59.925 52.381 0.00 0.00 42.47 4.00
291 292 1.384191 GGGGTCACCAGCCATCTTT 59.616 57.895 0.00 0.00 42.66 2.52
298 299 4.564821 GGTCACCAGCCATCTTTGTAGTTA 60.565 45.833 0.00 0.00 0.00 2.24
313 314 9.778741 TCTTTGTAGTTACATCTTTTGAGACAT 57.221 29.630 0.00 0.00 35.89 3.06
398 2074 0.541863 CCGCCTACTCCAAGTCCAAT 59.458 55.000 0.00 0.00 0.00 3.16
419 2095 7.293299 TCCAATTGAAGTCCTCTATCCATATGT 59.707 37.037 7.12 0.00 0.00 2.29
463 2139 6.042143 TCTTGCAAGTTCAAGGATTTTGTTC 58.958 36.000 25.19 0.00 42.68 3.18
475 2151 4.583073 AGGATTTTGTTCCGCACTACTTTT 59.417 37.500 0.00 0.00 40.94 2.27
480 2156 5.856126 TTGTTCCGCACTACTTTTCATAG 57.144 39.130 0.00 0.00 0.00 2.23
483 2159 3.932822 TCCGCACTACTTTTCATAGCAA 58.067 40.909 0.00 0.00 0.00 3.91
484 2160 4.513442 TCCGCACTACTTTTCATAGCAAT 58.487 39.130 0.00 0.00 0.00 3.56
561 2239 6.316890 GGTGCCAATTCAATGCAATAGAAATT 59.683 34.615 0.00 0.00 36.65 1.82
562 2240 7.148205 GGTGCCAATTCAATGCAATAGAAATTT 60.148 33.333 0.00 0.00 36.65 1.82
585 2263 5.362105 AATGGGCATGACTTTGCAATTAT 57.638 34.783 0.00 0.00 44.59 1.28
652 2330 8.340443 CCTTAGTGGCGACCTTAATAAATAAAC 58.660 37.037 0.00 0.00 0.00 2.01
729 2410 4.322650 GCCAATCACCAATGGTTACAATGT 60.323 41.667 0.16 0.00 39.00 2.71
740 2423 5.193663 TGGTTACAATGTTTCCATGTGTG 57.806 39.130 0.00 0.00 0.00 3.82
813 2497 2.064014 GTTGCTTCTGGCTTTGATTGC 58.936 47.619 0.00 0.00 42.39 3.56
944 2629 1.090625 GCTCTGCTCTGCATGGACAG 61.091 60.000 0.00 0.00 38.13 3.51
1539 3224 7.387948 GGAAAGTAAGTTAGTTGCATCTGAAGA 59.612 37.037 10.13 0.00 0.00 2.87
1547 3232 2.174363 TGCATCTGAAGACCACAGTG 57.826 50.000 0.00 0.00 36.81 3.66
1552 3237 0.109342 CTGAAGACCACAGTGCCCTT 59.891 55.000 0.00 0.10 0.00 3.95
1559 3244 1.480545 ACCACAGTGCCCTTTGTTTTC 59.519 47.619 0.00 0.00 0.00 2.29
1592 3277 2.293122 TGCACCACACAACTATCAAAGC 59.707 45.455 0.00 0.00 0.00 3.51
1604 3289 3.751698 ACTATCAAAGCGGAAAGTCAACC 59.248 43.478 0.00 0.00 0.00 3.77
1615 3309 4.094442 CGGAAAGTCAACCCAAATACTAGC 59.906 45.833 0.00 0.00 0.00 3.42
1652 3346 0.815213 TATGCCGGCATGAACTCTGC 60.815 55.000 44.59 8.61 37.82 4.26
1833 3598 5.119931 TGTAAATGTTGTGGACTCATTGC 57.880 39.130 0.00 0.00 33.04 3.56
1835 3600 4.942761 AAATGTTGTGGACTCATTGCTT 57.057 36.364 0.00 0.00 33.04 3.91
1929 3694 2.680352 GCCGTCCAGACCTCCTCA 60.680 66.667 0.00 0.00 0.00 3.86
1932 3697 0.396417 CCGTCCAGACCTCCTCATCT 60.396 60.000 0.00 0.00 0.00 2.90
2165 3937 2.630098 GCTGGTGCCTGATAGTATCTCA 59.370 50.000 11.40 4.40 0.00 3.27
2180 3952 5.360591 AGTATCTCATTGTTTAGGCGGAAG 58.639 41.667 0.00 0.00 0.00 3.46
2230 4002 5.636965 CGCCAGATTCAGATAGTAGGAAATG 59.363 44.000 0.00 0.00 0.00 2.32
2239 4011 4.965532 AGATAGTAGGAAATGTCAGGTGCT 59.034 41.667 0.00 0.00 0.00 4.40
2243 4015 2.508526 AGGAAATGTCAGGTGCTTGAC 58.491 47.619 7.39 7.39 46.02 3.18
2258 4030 2.168496 CTTGACTAGGACAGTTCCCGA 58.832 52.381 0.00 0.00 44.10 5.14
2266 4038 1.803366 GACAGTTCCCGAGACCGTGT 61.803 60.000 0.00 0.00 0.00 4.49
2397 4182 2.579873 AGATCACATATGCAAGTGGGC 58.420 47.619 14.71 8.83 36.43 5.36
2409 4194 2.218603 CAAGTGGGCAAGAAACTACGT 58.781 47.619 0.00 0.00 0.00 3.57
2410 4195 3.395639 CAAGTGGGCAAGAAACTACGTA 58.604 45.455 0.00 0.00 0.00 3.57
2411 4196 3.036075 AGTGGGCAAGAAACTACGTAC 57.964 47.619 0.00 0.00 0.00 3.67
2412 4197 2.631545 AGTGGGCAAGAAACTACGTACT 59.368 45.455 0.00 0.00 0.00 2.73
2413 4198 3.828451 AGTGGGCAAGAAACTACGTACTA 59.172 43.478 0.00 0.00 0.00 1.82
2414 4199 3.922850 GTGGGCAAGAAACTACGTACTAC 59.077 47.826 0.00 0.00 0.00 2.73
2415 4200 3.828451 TGGGCAAGAAACTACGTACTACT 59.172 43.478 0.00 0.00 0.00 2.57
2416 4201 4.171754 GGGCAAGAAACTACGTACTACTG 58.828 47.826 0.00 0.00 0.00 2.74
2417 4202 4.171754 GGCAAGAAACTACGTACTACTGG 58.828 47.826 0.00 0.00 0.00 4.00
2418 4203 3.611549 GCAAGAAACTACGTACTACTGGC 59.388 47.826 0.00 0.00 0.00 4.85
2419 4204 4.617762 GCAAGAAACTACGTACTACTGGCT 60.618 45.833 0.00 0.00 0.00 4.75
2420 4205 4.698583 AGAAACTACGTACTACTGGCTG 57.301 45.455 0.00 0.00 0.00 4.85
2421 4206 2.935481 AACTACGTACTACTGGCTGC 57.065 50.000 0.00 0.00 0.00 5.25
2422 4207 2.125773 ACTACGTACTACTGGCTGCT 57.874 50.000 0.00 0.00 0.00 4.24
2423 4208 2.015587 ACTACGTACTACTGGCTGCTC 58.984 52.381 0.00 0.00 0.00 4.26
2424 4209 2.290464 CTACGTACTACTGGCTGCTCT 58.710 52.381 0.00 0.00 0.00 4.09
2425 4210 0.811915 ACGTACTACTGGCTGCTCTG 59.188 55.000 0.00 0.00 0.00 3.35
2426 4211 1.095600 CGTACTACTGGCTGCTCTGA 58.904 55.000 0.00 0.00 0.00 3.27
2427 4212 1.472878 CGTACTACTGGCTGCTCTGAA 59.527 52.381 0.00 0.00 0.00 3.02
2457 4656 2.390599 CCACCGTCGGCACATTCTG 61.391 63.158 12.28 0.00 0.00 3.02
2469 4668 2.796593 GCACATTCTGCTGAACCAAAAC 59.203 45.455 8.32 0.00 43.33 2.43
2471 4670 2.365293 ACATTCTGCTGAACCAAAACCC 59.635 45.455 8.32 0.00 34.71 4.11
2487 4686 5.633182 CCAAAACCCACGAATACTCAATTTG 59.367 40.000 0.00 0.00 35.36 2.32
2553 4753 2.662006 TCTGAAATCACCTCTCGCAG 57.338 50.000 0.00 0.00 0.00 5.18
2556 4756 2.670414 CTGAAATCACCTCTCGCAGTTC 59.330 50.000 0.00 0.00 0.00 3.01
2581 4781 1.265095 ACAAATCTCAGCAGCAACACG 59.735 47.619 0.00 0.00 0.00 4.49
2583 4783 1.151668 AATCTCAGCAGCAACACGTC 58.848 50.000 0.00 0.00 0.00 4.34
2611 4811 1.280421 AGGAGTTCAGAATGCCAGACC 59.720 52.381 6.93 0.00 34.76 3.85
2671 4912 5.086058 CGTTCTTGGTCAAACAATATTCGG 58.914 41.667 0.00 0.00 0.00 4.30
2687 4928 3.174790 CGGTTCTAAGCGGGATACG 57.825 57.895 6.41 0.00 45.30 3.06
2707 4948 2.076863 GGTTCCACAGTAGTGCATCAC 58.923 52.381 0.00 0.00 44.53 3.06
2723 4964 0.251653 TCACCCGGTTCTCTAGCTGT 60.252 55.000 0.00 0.00 0.00 4.40
2791 5032 2.286872 CTGGACAGCCATCACTCATTC 58.713 52.381 0.00 0.00 44.91 2.67
2799 5040 1.633561 CATCACTCATTCGAGCACGT 58.366 50.000 2.86 0.00 43.66 4.49
2856 5097 0.164647 CTACAGCTCAACAACAGCGC 59.835 55.000 0.00 0.00 42.14 5.92
3147 5388 0.179137 CGCTGCCGTGAGAGAATACA 60.179 55.000 0.00 0.00 0.00 2.29
3168 5409 4.236935 CAAATGTCCCAATGCTACAACAC 58.763 43.478 0.00 0.00 0.00 3.32
3171 5412 1.200020 GTCCCAATGCTACAACACAGC 59.800 52.381 0.00 0.00 39.56 4.40
3175 5416 3.696051 CCCAATGCTACAACACAGCTAAT 59.304 43.478 0.00 0.00 39.83 1.73
3177 5418 4.494690 CCAATGCTACAACACAGCTAATCG 60.495 45.833 0.00 0.00 39.83 3.34
3187 5428 1.210478 ACAGCTAATCGCCCTTGTGAT 59.790 47.619 0.00 0.00 43.47 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 9.021807 TCTATAACTCCATTTCTAGTATTCGGG 57.978 37.037 0.00 0.00 0.00 5.14
97 98 3.443976 ACTCCAAAATCACGCAAAACAC 58.556 40.909 0.00 0.00 0.00 3.32
137 138 8.522830 AGTATGAATGGTGATAGTTGTTTTTGG 58.477 33.333 0.00 0.00 0.00 3.28
144 145 7.935755 AGGATCAAGTATGAATGGTGATAGTTG 59.064 37.037 0.00 0.00 39.49 3.16
147 148 7.935755 ACAAGGATCAAGTATGAATGGTGATAG 59.064 37.037 0.00 0.00 39.49 2.08
184 185 5.847304 TCACATTGAGTCCATAGCTATGAC 58.153 41.667 31.14 24.68 35.75 3.06
254 255 3.368739 CCCCCAATTCTTCAATGACAAGC 60.369 47.826 0.00 0.00 0.00 4.01
283 284 7.816640 TCAAAAGATGTAACTACAAAGATGGC 58.183 34.615 0.00 0.00 39.99 4.40
343 344 4.518590 TGAGGTTGAACACATGTGTAATGG 59.481 41.667 30.75 4.37 44.13 3.16
398 2074 6.846505 AGGAACATATGGATAGAGGACTTCAA 59.153 38.462 7.80 0.00 0.00 2.69
419 2095 4.894784 AGATTCAAGCTTACAACGAGGAA 58.105 39.130 0.00 0.00 0.00 3.36
455 2131 5.508200 TGAAAAGTAGTGCGGAACAAAAT 57.492 34.783 0.00 0.00 0.00 1.82
463 2139 4.882671 ATTGCTATGAAAAGTAGTGCGG 57.117 40.909 0.00 0.00 0.00 5.69
504 2180 7.915508 TGGTTGATGCACTATATAGAAAAACG 58.084 34.615 16.79 0.00 0.00 3.60
508 2184 7.254761 CGCTTTGGTTGATGCACTATATAGAAA 60.255 37.037 16.79 1.93 0.00 2.52
511 2187 5.466728 ACGCTTTGGTTGATGCACTATATAG 59.533 40.000 8.27 8.27 0.00 1.31
561 2239 4.822685 ATTGCAAAGTCATGCCCATTAA 57.177 36.364 1.71 0.00 45.83 1.40
562 2240 4.822685 AATTGCAAAGTCATGCCCATTA 57.177 36.364 1.71 0.00 45.83 1.90
605 2283 9.614792 CTAAGGGCAAAATACACTTAGTCTTAT 57.385 33.333 4.92 0.00 37.12 1.73
611 2289 6.436843 CCACTAAGGGCAAAATACACTTAG 57.563 41.667 10.46 10.46 43.71 2.18
652 2330 9.716507 CTCCTCCACAAATTAAATACGTTTATG 57.283 33.333 0.00 0.00 30.34 1.90
662 2340 4.380843 TGCCTCTCCTCCACAAATTAAA 57.619 40.909 0.00 0.00 0.00 1.52
729 2410 1.317613 GGCAGACACACACATGGAAA 58.682 50.000 0.00 0.00 0.00 3.13
813 2497 3.908382 CGAATTTTCAAAGGTGAGAAGCG 59.092 43.478 0.00 0.00 31.88 4.68
1130 2815 3.714001 CAGCAGCTGCCCTCCTGA 61.714 66.667 34.39 0.00 43.38 3.86
1255 2940 2.764128 CGGAAGCTCCTGCCCCTA 60.764 66.667 0.00 0.00 40.80 3.53
1478 3163 0.815734 TAGTGTAGGCTGAAGGTCGC 59.184 55.000 0.00 0.00 0.00 5.19
1487 3172 2.225293 TGAACTGGGAGTAGTGTAGGCT 60.225 50.000 0.00 0.00 0.00 4.58
1524 3209 3.324846 ACTGTGGTCTTCAGATGCAACTA 59.675 43.478 0.00 0.00 36.81 2.24
1525 3210 2.105477 ACTGTGGTCTTCAGATGCAACT 59.895 45.455 0.00 0.00 36.81 3.16
1539 3224 1.480545 GAAAACAAAGGGCACTGTGGT 59.519 47.619 11.79 0.00 36.18 4.16
1547 3232 2.632512 TCTGGAATGGAAAACAAAGGGC 59.367 45.455 0.00 0.00 0.00 5.19
1552 3237 5.055812 GTGCAATTCTGGAATGGAAAACAA 58.944 37.500 2.19 0.00 0.00 2.83
1559 3244 1.894466 TGTGGTGCAATTCTGGAATGG 59.106 47.619 0.00 0.00 0.00 3.16
1592 3277 4.094442 GCTAGTATTTGGGTTGACTTTCCG 59.906 45.833 0.00 0.00 0.00 4.30
1604 3289 4.823989 AGCTTGGCTAATGCTAGTATTTGG 59.176 41.667 11.50 6.61 36.99 3.28
1652 3346 0.385751 TCTCGCCGGCTATTCTCAAG 59.614 55.000 26.68 5.22 0.00 3.02
1803 3568 5.124457 AGTCCACAACATTTACATGATCAGC 59.876 40.000 0.00 0.00 34.11 4.26
1833 3598 0.252197 CCCTCGGGTCCAAACCTAAG 59.748 60.000 0.00 0.00 45.66 2.18
1835 3600 0.616679 CTCCCTCGGGTCCAAACCTA 60.617 60.000 1.18 0.00 45.66 3.08
1929 3694 2.439104 GGCGGAGGAGCAGGAAGAT 61.439 63.158 0.00 0.00 39.27 2.40
1950 3715 2.664851 TTCCTGACACCGCTTGCG 60.665 61.111 8.14 8.14 0.00 4.85
1980 3745 1.974875 TTCGCCTGCTGACGTAGGA 60.975 57.895 6.28 0.00 44.96 2.94
2077 3844 3.009115 CATGGACCGAGGGTGGGT 61.009 66.667 0.00 0.00 41.48 4.51
2165 3937 1.084289 GACGCTTCCGCCTAAACAAT 58.916 50.000 0.00 0.00 38.22 2.71
2180 3952 2.240500 GCCGAGTGGATCATGACGC 61.241 63.158 0.00 0.00 37.49 5.19
2230 4002 1.618837 TGTCCTAGTCAAGCACCTGAC 59.381 52.381 5.68 5.68 45.10 3.51
2239 4011 2.168496 CTCGGGAACTGTCCTAGTCAA 58.832 52.381 0.00 0.00 44.28 3.18
2243 4015 1.104630 GGTCTCGGGAACTGTCCTAG 58.895 60.000 0.00 0.00 44.28 3.02
2266 4038 6.708949 GTCTATAACAATCTTAATTGCCCGGA 59.291 38.462 0.73 0.00 45.16 5.14
2337 4114 7.278875 GGTCAATCTCCTCTACTTTCATCAAT 58.721 38.462 0.00 0.00 0.00 2.57
2338 4115 6.628175 CGGTCAATCTCCTCTACTTTCATCAA 60.628 42.308 0.00 0.00 0.00 2.57
2339 4116 5.163509 CGGTCAATCTCCTCTACTTTCATCA 60.164 44.000 0.00 0.00 0.00 3.07
2340 4117 5.285651 CGGTCAATCTCCTCTACTTTCATC 58.714 45.833 0.00 0.00 0.00 2.92
2341 4118 4.100189 CCGGTCAATCTCCTCTACTTTCAT 59.900 45.833 0.00 0.00 0.00 2.57
2342 4119 3.447586 CCGGTCAATCTCCTCTACTTTCA 59.552 47.826 0.00 0.00 0.00 2.69
2343 4120 3.738590 GCCGGTCAATCTCCTCTACTTTC 60.739 52.174 1.90 0.00 0.00 2.62
2344 4121 2.168728 GCCGGTCAATCTCCTCTACTTT 59.831 50.000 1.90 0.00 0.00 2.66
2377 4154 2.092267 TGCCCACTTGCATATGTGATCT 60.092 45.455 14.09 0.00 36.04 2.75
2397 4182 4.857588 CAGCCAGTAGTACGTAGTTTCTTG 59.142 45.833 8.48 5.38 37.78 3.02
2399 4184 3.119566 GCAGCCAGTAGTACGTAGTTTCT 60.120 47.826 8.48 5.24 37.78 2.52
2409 4194 3.165875 ACTTTCAGAGCAGCCAGTAGTA 58.834 45.455 0.00 0.00 0.00 1.82
2410 4195 1.974236 ACTTTCAGAGCAGCCAGTAGT 59.026 47.619 0.00 0.00 0.00 2.73
2411 4196 2.740981 CAACTTTCAGAGCAGCCAGTAG 59.259 50.000 0.00 0.00 0.00 2.57
2412 4197 2.771089 CAACTTTCAGAGCAGCCAGTA 58.229 47.619 0.00 0.00 0.00 2.74
2413 4198 1.602311 CAACTTTCAGAGCAGCCAGT 58.398 50.000 0.00 0.00 0.00 4.00
2414 4199 0.240411 GCAACTTTCAGAGCAGCCAG 59.760 55.000 0.00 0.00 0.00 4.85
2415 4200 0.466007 TGCAACTTTCAGAGCAGCCA 60.466 50.000 0.00 0.00 32.48 4.75
2416 4201 0.240411 CTGCAACTTTCAGAGCAGCC 59.760 55.000 0.00 0.00 46.51 4.85
2417 4202 3.769228 CTGCAACTTTCAGAGCAGC 57.231 52.632 0.00 0.00 46.51 5.25
2419 4204 1.538512 GCATCTGCAACTTTCAGAGCA 59.461 47.619 0.00 0.00 43.02 4.26
2420 4205 1.135460 GGCATCTGCAACTTTCAGAGC 60.135 52.381 4.33 2.13 43.02 4.09
2421 4206 2.095364 GTGGCATCTGCAACTTTCAGAG 60.095 50.000 4.33 0.00 43.02 3.35
2422 4207 1.881973 GTGGCATCTGCAACTTTCAGA 59.118 47.619 4.33 0.00 41.68 3.27
2423 4208 1.068055 GGTGGCATCTGCAACTTTCAG 60.068 52.381 9.45 0.00 44.30 3.02
2424 4209 0.961019 GGTGGCATCTGCAACTTTCA 59.039 50.000 9.45 0.00 44.30 2.69
2425 4210 0.109597 CGGTGGCATCTGCAACTTTC 60.110 55.000 9.45 0.00 44.30 2.62
2426 4211 0.823356 ACGGTGGCATCTGCAACTTT 60.823 50.000 9.45 0.00 44.30 2.66
2427 4212 1.228245 ACGGTGGCATCTGCAACTT 60.228 52.632 9.45 0.00 44.30 2.66
2457 4656 0.741915 TTCGTGGGTTTTGGTTCAGC 59.258 50.000 0.00 0.00 0.00 4.26
2461 4660 3.822940 TGAGTATTCGTGGGTTTTGGTT 58.177 40.909 0.00 0.00 0.00 3.67
2469 4668 3.689161 TGAGCAAATTGAGTATTCGTGGG 59.311 43.478 0.00 0.00 0.00 4.61
2471 4670 5.791974 CAGTTGAGCAAATTGAGTATTCGTG 59.208 40.000 0.00 0.00 0.00 4.35
2487 4686 1.331756 CTGGTGTTGTGTCAGTTGAGC 59.668 52.381 0.00 0.00 0.00 4.26
2544 4744 0.318699 TGTCAACGAACTGCGAGAGG 60.319 55.000 0.00 0.00 44.57 3.69
2553 4753 3.803555 CTGCTGAGATTTGTCAACGAAC 58.196 45.455 0.00 0.00 0.00 3.95
2556 4756 1.532437 TGCTGCTGAGATTTGTCAACG 59.468 47.619 0.00 0.00 0.00 4.10
2581 4781 3.753294 TCTGAACTCCTGAACCTTGAC 57.247 47.619 0.00 0.00 0.00 3.18
2583 4783 3.190118 GCATTCTGAACTCCTGAACCTTG 59.810 47.826 0.00 0.00 35.90 3.61
2611 4811 1.197721 CTGTTAGCTTTTCTGTGGCCG 59.802 52.381 0.00 0.00 0.00 6.13
2620 4856 4.342092 ACTGAATGCAACCTGTTAGCTTTT 59.658 37.500 0.00 0.00 0.00 2.27
2671 4912 2.467838 GAACCGTATCCCGCTTAGAAC 58.532 52.381 0.00 0.00 34.38 3.01
2680 4921 2.105766 ACTACTGTGGAACCGTATCCC 58.894 52.381 0.00 0.00 35.96 3.85
2684 4925 1.330234 TGCACTACTGTGGAACCGTA 58.670 50.000 0.00 0.00 41.50 4.02
2707 4948 3.118738 ACATTAACAGCTAGAGAACCGGG 60.119 47.826 6.32 0.00 0.00 5.73
2791 5032 4.394795 CATTTTTCTTCCTTACGTGCTCG 58.605 43.478 6.63 6.63 43.34 5.03
2799 5040 6.074648 TGGAGAAAGGCATTTTTCTTCCTTA 58.925 36.000 13.20 0.00 45.00 2.69
2856 5097 9.719279 GTATTGTGCTCTAGTAGTAACTTGTAG 57.281 37.037 0.00 0.00 37.15 2.74
2927 5168 7.224297 AGTTGAAGAGCCTTTGTATAAAGTCA 58.776 34.615 10.61 5.02 41.36 3.41
3147 5388 3.894427 TGTGTTGTAGCATTGGGACATTT 59.106 39.130 0.00 0.00 39.30 2.32
3171 5412 6.436843 AACTTAAATCACAAGGGCGATTAG 57.563 37.500 0.00 0.00 31.65 1.73
3175 5416 4.879545 GGATAACTTAAATCACAAGGGCGA 59.120 41.667 0.00 0.00 0.00 5.54
3177 5418 6.183360 GGAAGGATAACTTAAATCACAAGGGC 60.183 42.308 0.00 0.00 40.21 5.19
3187 5428 6.271391 TGACCAGTCAGGAAGGATAACTTAAA 59.729 38.462 0.00 0.00 41.22 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.