Multiple sequence alignment - TraesCS2B01G308200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G308200 chr2B 100.000 5139 0 0 1 5139 441074843 441079981 0.000000e+00 9491.0
1 TraesCS2B01G308200 chr2B 90.698 172 13 3 477 646 185023098 185022928 5.180000e-55 226.0
2 TraesCS2B01G308200 chr2B 89.262 149 12 4 312 460 694729440 694729296 3.160000e-42 183.0
3 TraesCS2B01G308200 chr2D 93.652 1843 66 18 2787 4592 371921812 371923640 0.000000e+00 2708.0
4 TraesCS2B01G308200 chr2D 95.811 1313 33 5 642 1941 371919429 371920732 0.000000e+00 2100.0
5 TraesCS2B01G308200 chr2D 95.498 311 12 1 4829 5139 371924340 371924648 3.570000e-136 496.0
6 TraesCS2B01G308200 chr2D 88.530 279 22 5 2484 2753 371921334 371921611 3.840000e-86 329.0
7 TraesCS2B01G308200 chr2D 93.981 216 13 0 2228 2443 371921055 371921270 1.380000e-85 327.0
8 TraesCS2B01G308200 chr2D 98.830 171 2 0 1946 2116 371920887 371921057 6.460000e-79 305.0
9 TraesCS2B01G308200 chr2D 90.751 173 15 1 473 645 181299358 181299187 4.000000e-56 230.0
10 TraesCS2B01G308200 chr2D 90.588 170 16 0 481 650 420278321 420278152 5.180000e-55 226.0
11 TraesCS2B01G308200 chr2D 88.043 184 20 2 469 652 651636795 651636976 3.120000e-52 217.0
12 TraesCS2B01G308200 chr2D 90.506 158 14 1 324 480 371919272 371919429 1.880000e-49 207.0
13 TraesCS2B01G308200 chr2D 95.276 127 4 2 2115 2240 451299528 451299403 3.140000e-47 200.0
14 TraesCS2B01G308200 chr2A 93.941 1733 63 16 2817 4510 502624083 502625812 0.000000e+00 2580.0
15 TraesCS2B01G308200 chr2A 95.346 1504 35 10 625 2116 502621928 502623408 0.000000e+00 2357.0
16 TraesCS2B01G308200 chr2A 86.630 546 42 11 2228 2765 502623406 502623928 4.460000e-160 575.0
17 TraesCS2B01G308200 chr2A 92.025 326 19 6 4819 5139 502626410 502626733 7.850000e-123 451.0
18 TraesCS2B01G308200 chr2A 97.500 120 3 0 2114 2233 757643701 757643582 6.740000e-49 206.0
19 TraesCS2B01G308200 chr2A 94.615 130 5 2 2105 2232 622695790 622695661 3.140000e-47 200.0
20 TraesCS2B01G308200 chr2A 89.865 148 11 3 317 464 728881126 728880983 2.440000e-43 187.0
21 TraesCS2B01G308200 chr2A 87.417 151 14 4 309 459 308120016 308120161 8.850000e-38 169.0
22 TraesCS2B01G308200 chr2A 78.277 267 31 17 4544 4791 502625806 502626064 4.150000e-31 147.0
23 TraesCS2B01G308200 chr6D 95.238 210 10 0 1 210 202964107 202964316 2.970000e-87 333.0
24 TraesCS2B01G308200 chr6D 89.944 179 16 2 477 654 41542655 41542478 4.000000e-56 230.0
25 TraesCS2B01G308200 chr6D 88.950 181 19 1 478 657 425992838 425993018 6.700000e-54 222.0
26 TraesCS2B01G308200 chr6D 90.278 144 13 1 317 459 158203368 158203225 2.440000e-43 187.0
27 TraesCS2B01G308200 chr6D 90.345 145 9 4 317 461 26753979 26754118 8.790000e-43 185.0
28 TraesCS2B01G308200 chr3B 95.261 211 9 1 1 210 157365972 157365762 2.970000e-87 333.0
29 TraesCS2B01G308200 chr3B 90.588 170 16 0 478 647 111133822 111133653 5.180000e-55 226.0
30 TraesCS2B01G308200 chr3B 96.748 123 3 1 2113 2235 173375802 173375681 2.430000e-48 204.0
31 TraesCS2B01G308200 chrUn 93.182 220 13 2 1 220 81868165 81867948 6.420000e-84 322.0
32 TraesCS2B01G308200 chrUn 91.818 220 16 2 1 220 277624889 277625106 6.460000e-79 305.0
33 TraesCS2B01G308200 chrUn 90.455 220 15 3 1 220 282109439 282109652 8.420000e-73 285.0
34 TraesCS2B01G308200 chrUn 90.455 220 15 3 1 220 347373271 347373058 8.420000e-73 285.0
35 TraesCS2B01G308200 chrUn 92.029 138 11 0 327 464 32265173 32265310 1.460000e-45 195.0
36 TraesCS2B01G308200 chr4B 94.286 210 12 0 1 210 362341596 362341805 6.420000e-84 322.0
37 TraesCS2B01G308200 chr4B 93.333 135 9 0 330 464 25394404 25394270 3.140000e-47 200.0
38 TraesCS2B01G308200 chr7D 92.093 215 11 3 1 214 28196985 28196776 1.080000e-76 298.0
39 TraesCS2B01G308200 chr7D 90.476 147 12 2 324 468 266956635 266956781 5.250000e-45 193.0
40 TraesCS2B01G308200 chr3D 91.905 210 15 2 2 210 231699916 231700124 5.030000e-75 292.0
41 TraesCS2B01G308200 chr3D 95.455 132 6 0 2109 2240 279902331 279902200 1.450000e-50 211.0
42 TraesCS2B01G308200 chr3D 94.615 130 7 0 330 459 603709148 603709019 8.730000e-48 202.0
43 TraesCS2B01G308200 chr3D 93.333 135 8 1 330 463 15953713 15953579 1.130000e-46 198.0
44 TraesCS2B01G308200 chr4D 89.444 180 17 2 478 656 23005398 23005220 5.180000e-55 226.0
45 TraesCS2B01G308200 chr1D 91.071 168 14 1 478 645 110500283 110500449 5.180000e-55 226.0
46 TraesCS2B01G308200 chr1D 93.284 134 9 0 330 463 408713810 408713677 1.130000e-46 198.0
47 TraesCS2B01G308200 chr6B 99.138 116 1 0 2115 2230 601043060 601043175 5.210000e-50 209.0
48 TraesCS2B01G308200 chr6B 88.125 160 13 5 309 467 290212387 290212541 8.790000e-43 185.0
49 TraesCS2B01G308200 chr6B 85.542 166 16 7 295 459 62179665 62179823 3.180000e-37 167.0
50 TraesCS2B01G308200 chr5D 97.500 120 2 1 2112 2230 270254024 270254143 2.430000e-48 204.0
51 TraesCS2B01G308200 chr5D 82.667 75 7 5 615 684 434334971 434335044 1.550000e-05 62.1
52 TraesCS2B01G308200 chr5A 94.615 130 7 0 330 459 31444131 31444002 8.730000e-48 202.0
53 TraesCS2B01G308200 chr4A 95.968 124 5 0 2108 2231 73459802 73459925 8.730000e-48 202.0
54 TraesCS2B01G308200 chr1B 96.694 121 4 0 2113 2233 654278676 654278556 8.730000e-48 202.0
55 TraesCS2B01G308200 chr1B 88.961 154 16 1 2348 2501 668916237 668916085 6.790000e-44 189.0
56 TraesCS2B01G308200 chr7B 90.226 133 13 0 327 459 741240097 741239965 1.900000e-39 174.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G308200 chr2B 441074843 441079981 5138 False 9491.000000 9491 100.000000 1 5139 1 chr2B.!!$F1 5138
1 TraesCS2B01G308200 chr2D 371919272 371924648 5376 False 924.571429 2708 93.829714 324 5139 7 chr2D.!!$F2 4815
2 TraesCS2B01G308200 chr2A 502621928 502626733 4805 False 1222.000000 2580 89.243800 625 5139 5 chr2A.!!$F2 4514

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
269 270 0.032117 GGCTTATTGGCCCCCTCTTT 60.032 55.0 0.00 0.0 45.92 2.52 F
2133 2306 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.0 5.23 0.0 44.66 2.17 F
2134 2307 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.0 5.23 0.0 44.66 1.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2115 2288 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.0 13.64 0.0 46.06 3.85 R
4071 4514 0.179137 CGCTGCCGTGAGAGAATACA 60.179 55.0 0.00 0.0 0.00 2.29 R
4362 4805 0.164647 CTACAGCTCAACAACAGCGC 59.835 55.0 0.00 0.0 42.14 5.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.914426 TCCTAAAAGGAGATGTGGAGC 57.086 47.619 0.00 0.00 40.06 4.70
25 26 2.505819 TCCTAAAAGGAGATGTGGAGCC 59.494 50.000 0.00 0.00 40.06 4.70
26 27 2.507471 CCTAAAAGGAGATGTGGAGCCT 59.493 50.000 0.00 0.00 37.67 4.58
27 28 3.711704 CCTAAAAGGAGATGTGGAGCCTA 59.288 47.826 0.00 0.00 37.67 3.93
28 29 4.349342 CCTAAAAGGAGATGTGGAGCCTAT 59.651 45.833 0.00 0.00 37.67 2.57
29 30 4.429854 AAAAGGAGATGTGGAGCCTATC 57.570 45.455 0.00 0.00 0.00 2.08
30 31 8.428407 CCTAAAAGGAGATGTGGAGCCTATCC 62.428 50.000 0.00 0.00 43.06 2.59
37 38 4.105388 GGAGCCTATCCTCGGAGG 57.895 66.667 18.25 18.25 45.64 4.30
38 39 1.608046 GGAGCCTATCCTCGGAGGG 60.608 68.421 23.39 8.80 45.64 4.30
39 40 2.203714 AGCCTATCCTCGGAGGGC 60.204 66.667 23.39 17.87 42.81 5.19
40 41 2.203714 GCCTATCCTCGGAGGGCT 60.204 66.667 23.39 13.65 40.89 5.19
41 42 1.076906 GCCTATCCTCGGAGGGCTA 59.923 63.158 23.39 14.02 40.89 3.93
42 43 0.968393 GCCTATCCTCGGAGGGCTAG 60.968 65.000 23.39 21.03 40.89 3.42
43 44 0.406361 CCTATCCTCGGAGGGCTAGT 59.594 60.000 23.39 7.88 35.59 2.57
44 45 1.203075 CCTATCCTCGGAGGGCTAGTT 60.203 57.143 23.39 5.25 35.59 2.24
45 46 2.164338 CTATCCTCGGAGGGCTAGTTC 58.836 57.143 23.39 0.00 35.59 3.01
46 47 0.261991 ATCCTCGGAGGGCTAGTTCA 59.738 55.000 23.39 2.17 35.59 3.18
47 48 0.395862 TCCTCGGAGGGCTAGTTCAG 60.396 60.000 23.39 0.00 35.59 3.02
48 49 0.684805 CCTCGGAGGGCTAGTTCAGT 60.685 60.000 16.59 0.00 0.00 3.41
49 50 0.457851 CTCGGAGGGCTAGTTCAGTG 59.542 60.000 0.00 0.00 0.00 3.66
50 51 0.970937 TCGGAGGGCTAGTTCAGTGG 60.971 60.000 0.00 0.00 0.00 4.00
51 52 1.222113 GGAGGGCTAGTTCAGTGGC 59.778 63.158 0.00 0.00 0.00 5.01
52 53 1.222113 GAGGGCTAGTTCAGTGGCC 59.778 63.158 0.00 0.00 43.27 5.36
53 54 3.404773 GGGCTAGTTCAGTGGCCT 58.595 61.111 3.32 0.00 43.51 5.19
54 55 1.078143 GGGCTAGTTCAGTGGCCTG 60.078 63.158 3.32 0.00 43.51 4.85
55 56 1.553690 GGGCTAGTTCAGTGGCCTGA 61.554 60.000 3.32 0.00 45.95 3.86
61 62 2.284921 TCAGTGGCCTGAGGGGAG 60.285 66.667 3.32 0.00 42.80 4.30
62 63 2.284921 CAGTGGCCTGAGGGGAGA 60.285 66.667 3.32 0.00 41.50 3.71
63 64 1.920325 CAGTGGCCTGAGGGGAGAA 60.920 63.158 3.32 0.00 41.50 2.87
64 65 1.614824 AGTGGCCTGAGGGGAGAAG 60.615 63.158 3.32 0.00 37.23 2.85
65 66 1.920835 GTGGCCTGAGGGGAGAAGT 60.921 63.158 3.32 0.00 37.23 3.01
66 67 1.151810 TGGCCTGAGGGGAGAAGTT 60.152 57.895 3.32 0.00 37.23 2.66
67 68 0.118346 TGGCCTGAGGGGAGAAGTTA 59.882 55.000 3.32 0.00 37.23 2.24
68 69 0.833949 GGCCTGAGGGGAGAAGTTAG 59.166 60.000 0.00 0.00 37.23 2.34
69 70 0.833949 GCCTGAGGGGAGAAGTTAGG 59.166 60.000 0.00 0.00 37.23 2.69
70 71 0.833949 CCTGAGGGGAGAAGTTAGGC 59.166 60.000 0.00 0.00 37.23 3.93
71 72 1.623834 CCTGAGGGGAGAAGTTAGGCT 60.624 57.143 0.00 0.00 37.23 4.58
72 73 2.359355 CCTGAGGGGAGAAGTTAGGCTA 60.359 54.545 0.00 0.00 37.23 3.93
73 74 2.962421 CTGAGGGGAGAAGTTAGGCTAG 59.038 54.545 0.00 0.00 0.00 3.42
74 75 2.585900 TGAGGGGAGAAGTTAGGCTAGA 59.414 50.000 0.00 0.00 0.00 2.43
75 76 3.207777 TGAGGGGAGAAGTTAGGCTAGAT 59.792 47.826 0.00 0.00 0.00 1.98
76 77 4.228010 GAGGGGAGAAGTTAGGCTAGATT 58.772 47.826 0.00 0.00 0.00 2.40
77 78 5.103215 TGAGGGGAGAAGTTAGGCTAGATTA 60.103 44.000 0.00 0.00 0.00 1.75
78 79 5.399113 AGGGGAGAAGTTAGGCTAGATTAG 58.601 45.833 0.00 0.00 0.00 1.73
79 80 5.103000 AGGGGAGAAGTTAGGCTAGATTAGT 60.103 44.000 0.00 0.00 0.00 2.24
80 81 5.011227 GGGGAGAAGTTAGGCTAGATTAGTG 59.989 48.000 0.00 0.00 0.00 2.74
81 82 5.599242 GGGAGAAGTTAGGCTAGATTAGTGT 59.401 44.000 0.00 0.00 0.00 3.55
82 83 6.098552 GGGAGAAGTTAGGCTAGATTAGTGTT 59.901 42.308 0.00 0.00 0.00 3.32
83 84 7.204604 GGAGAAGTTAGGCTAGATTAGTGTTC 58.795 42.308 0.00 0.00 0.00 3.18
84 85 6.797454 AGAAGTTAGGCTAGATTAGTGTTCG 58.203 40.000 0.00 0.00 0.00 3.95
85 86 5.517322 AGTTAGGCTAGATTAGTGTTCGG 57.483 43.478 0.00 0.00 0.00 4.30
86 87 2.892784 AGGCTAGATTAGTGTTCGGC 57.107 50.000 0.00 0.00 0.00 5.54
87 88 2.389715 AGGCTAGATTAGTGTTCGGCT 58.610 47.619 0.00 0.00 0.00 5.52
88 89 2.766828 AGGCTAGATTAGTGTTCGGCTT 59.233 45.455 0.00 0.00 0.00 4.35
89 90 3.197983 AGGCTAGATTAGTGTTCGGCTTT 59.802 43.478 0.00 0.00 0.00 3.51
90 91 3.309954 GGCTAGATTAGTGTTCGGCTTTG 59.690 47.826 0.00 0.00 0.00 2.77
91 92 3.242446 GCTAGATTAGTGTTCGGCTTTGC 60.242 47.826 0.00 0.00 0.00 3.68
92 93 1.732259 AGATTAGTGTTCGGCTTTGCG 59.268 47.619 0.00 0.00 0.00 4.85
93 94 1.730064 GATTAGTGTTCGGCTTTGCGA 59.270 47.619 0.00 0.00 0.00 5.10
94 95 1.144969 TTAGTGTTCGGCTTTGCGAG 58.855 50.000 0.00 0.00 0.00 5.03
95 96 0.032952 TAGTGTTCGGCTTTGCGAGT 59.967 50.000 0.00 0.00 0.00 4.18
96 97 1.082756 GTGTTCGGCTTTGCGAGTG 60.083 57.895 0.00 0.00 0.00 3.51
97 98 2.250939 TGTTCGGCTTTGCGAGTGG 61.251 57.895 0.00 0.00 0.00 4.00
98 99 1.959226 GTTCGGCTTTGCGAGTGGA 60.959 57.895 0.00 0.00 0.00 4.02
99 100 1.667830 TTCGGCTTTGCGAGTGGAG 60.668 57.895 0.00 0.00 0.00 3.86
100 101 2.357517 CGGCTTTGCGAGTGGAGT 60.358 61.111 0.00 0.00 0.00 3.85
101 102 1.961277 CGGCTTTGCGAGTGGAGTT 60.961 57.895 0.00 0.00 0.00 3.01
102 103 1.576421 GGCTTTGCGAGTGGAGTTG 59.424 57.895 0.00 0.00 0.00 3.16
103 104 1.576421 GCTTTGCGAGTGGAGTTGG 59.424 57.895 0.00 0.00 0.00 3.77
104 105 1.166531 GCTTTGCGAGTGGAGTTGGT 61.167 55.000 0.00 0.00 0.00 3.67
105 106 1.308998 CTTTGCGAGTGGAGTTGGTT 58.691 50.000 0.00 0.00 0.00 3.67
106 107 1.264288 CTTTGCGAGTGGAGTTGGTTC 59.736 52.381 0.00 0.00 0.00 3.62
107 108 0.468226 TTGCGAGTGGAGTTGGTTCT 59.532 50.000 0.00 0.00 0.00 3.01
108 109 0.033504 TGCGAGTGGAGTTGGTTCTC 59.966 55.000 0.00 0.00 0.00 2.87
109 110 0.033504 GCGAGTGGAGTTGGTTCTCA 59.966 55.000 0.00 0.00 36.30 3.27
110 111 1.338200 GCGAGTGGAGTTGGTTCTCAT 60.338 52.381 0.00 0.00 36.30 2.90
111 112 2.341257 CGAGTGGAGTTGGTTCTCATG 58.659 52.381 0.00 0.00 36.30 3.07
112 113 2.289072 CGAGTGGAGTTGGTTCTCATGT 60.289 50.000 0.00 0.00 36.30 3.21
113 114 3.056821 CGAGTGGAGTTGGTTCTCATGTA 60.057 47.826 0.00 0.00 36.30 2.29
114 115 4.382040 CGAGTGGAGTTGGTTCTCATGTAT 60.382 45.833 0.00 0.00 36.30 2.29
115 116 5.091261 AGTGGAGTTGGTTCTCATGTATC 57.909 43.478 0.00 0.00 36.30 2.24
116 117 4.780021 AGTGGAGTTGGTTCTCATGTATCT 59.220 41.667 0.00 0.00 36.30 1.98
117 118 5.249393 AGTGGAGTTGGTTCTCATGTATCTT 59.751 40.000 0.00 0.00 36.30 2.40
118 119 5.940470 GTGGAGTTGGTTCTCATGTATCTTT 59.060 40.000 0.00 0.00 36.30 2.52
119 120 5.939883 TGGAGTTGGTTCTCATGTATCTTTG 59.060 40.000 0.00 0.00 36.30 2.77
120 121 5.940470 GGAGTTGGTTCTCATGTATCTTTGT 59.060 40.000 0.00 0.00 36.30 2.83
121 122 7.103641 GGAGTTGGTTCTCATGTATCTTTGTA 58.896 38.462 0.00 0.00 36.30 2.41
122 123 7.606456 GGAGTTGGTTCTCATGTATCTTTGTAA 59.394 37.037 0.00 0.00 36.30 2.41
123 124 8.324163 AGTTGGTTCTCATGTATCTTTGTAAC 57.676 34.615 0.00 0.00 0.00 2.50
124 125 7.936847 AGTTGGTTCTCATGTATCTTTGTAACA 59.063 33.333 0.00 0.00 0.00 2.41
125 126 8.730680 GTTGGTTCTCATGTATCTTTGTAACAT 58.269 33.333 0.00 0.00 34.22 2.71
127 128 7.882791 TGGTTCTCATGTATCTTTGTAACATGT 59.117 33.333 12.80 0.00 46.73 3.21
128 129 9.378551 GGTTCTCATGTATCTTTGTAACATGTA 57.621 33.333 12.80 2.73 46.73 2.29
132 133 9.689075 CTCATGTATCTTTGTAACATGTAAACG 57.311 33.333 12.80 0.00 46.73 3.60
133 134 8.172484 TCATGTATCTTTGTAACATGTAAACGC 58.828 33.333 12.80 0.00 46.73 4.84
134 135 6.833839 TGTATCTTTGTAACATGTAAACGCC 58.166 36.000 0.00 0.00 0.00 5.68
135 136 5.950758 ATCTTTGTAACATGTAAACGCCA 57.049 34.783 0.00 0.00 0.00 5.69
136 137 5.752892 TCTTTGTAACATGTAAACGCCAA 57.247 34.783 0.00 0.00 0.00 4.52
137 138 5.512473 TCTTTGTAACATGTAAACGCCAAC 58.488 37.500 0.00 0.00 0.00 3.77
138 139 4.895224 TTGTAACATGTAAACGCCAACA 57.105 36.364 0.00 0.00 0.00 3.33
139 140 5.440234 TTGTAACATGTAAACGCCAACAT 57.560 34.783 0.00 0.00 36.78 2.71
143 144 3.135414 CATGTAAACGCCAACATGGAG 57.865 47.619 13.82 0.00 45.94 3.86
144 145 1.529226 TGTAAACGCCAACATGGAGG 58.471 50.000 0.00 0.00 41.96 4.30
145 146 0.808755 GTAAACGCCAACATGGAGGG 59.191 55.000 0.00 1.98 41.96 4.30
146 147 0.322997 TAAACGCCAACATGGAGGGG 60.323 55.000 17.47 17.47 41.96 4.79
147 148 4.740822 ACGCCAACATGGAGGGGC 62.741 66.667 18.55 13.70 41.96 5.80
148 149 4.431131 CGCCAACATGGAGGGGCT 62.431 66.667 14.48 0.00 44.23 5.19
149 150 2.440980 GCCAACATGGAGGGGCTC 60.441 66.667 10.72 0.00 40.96 4.70
150 151 2.988839 GCCAACATGGAGGGGCTCT 61.989 63.158 10.72 0.00 40.96 4.09
151 152 1.693640 CCAACATGGAGGGGCTCTT 59.306 57.895 0.00 0.00 40.96 2.85
152 153 0.682209 CCAACATGGAGGGGCTCTTG 60.682 60.000 0.00 0.00 40.96 3.02
153 154 0.038744 CAACATGGAGGGGCTCTTGT 59.961 55.000 0.00 0.00 31.82 3.16
154 155 0.329596 AACATGGAGGGGCTCTTGTC 59.670 55.000 0.00 0.00 30.82 3.18
155 156 1.225704 CATGGAGGGGCTCTTGTCC 59.774 63.158 0.00 0.00 37.19 4.02
161 162 2.597903 GGGCTCTTGTCCCCATCC 59.402 66.667 0.00 0.00 41.13 3.51
162 163 2.003548 GGGCTCTTGTCCCCATCCT 61.004 63.158 0.00 0.00 41.13 3.24
163 164 1.529309 GGCTCTTGTCCCCATCCTC 59.471 63.158 0.00 0.00 0.00 3.71
164 165 0.985490 GGCTCTTGTCCCCATCCTCT 60.985 60.000 0.00 0.00 0.00 3.69
165 166 0.915364 GCTCTTGTCCCCATCCTCTT 59.085 55.000 0.00 0.00 0.00 2.85
166 167 1.134250 GCTCTTGTCCCCATCCTCTTC 60.134 57.143 0.00 0.00 0.00 2.87
167 168 1.488393 CTCTTGTCCCCATCCTCTTCC 59.512 57.143 0.00 0.00 0.00 3.46
168 169 1.081174 TCTTGTCCCCATCCTCTTCCT 59.919 52.381 0.00 0.00 0.00 3.36
169 170 1.918957 CTTGTCCCCATCCTCTTCCTT 59.081 52.381 0.00 0.00 0.00 3.36
170 171 2.059756 TGTCCCCATCCTCTTCCTTT 57.940 50.000 0.00 0.00 0.00 3.11
171 172 3.214694 TGTCCCCATCCTCTTCCTTTA 57.785 47.619 0.00 0.00 0.00 1.85
172 173 3.537337 TGTCCCCATCCTCTTCCTTTAA 58.463 45.455 0.00 0.00 0.00 1.52
173 174 4.119155 TGTCCCCATCCTCTTCCTTTAAT 58.881 43.478 0.00 0.00 0.00 1.40
174 175 5.293643 TGTCCCCATCCTCTTCCTTTAATA 58.706 41.667 0.00 0.00 0.00 0.98
175 176 5.917087 TGTCCCCATCCTCTTCCTTTAATAT 59.083 40.000 0.00 0.00 0.00 1.28
176 177 7.086260 TGTCCCCATCCTCTTCCTTTAATATA 58.914 38.462 0.00 0.00 0.00 0.86
177 178 7.744068 TGTCCCCATCCTCTTCCTTTAATATAT 59.256 37.037 0.00 0.00 0.00 0.86
178 179 9.280456 GTCCCCATCCTCTTCCTTTAATATATA 57.720 37.037 0.00 0.00 0.00 0.86
179 180 9.507381 TCCCCATCCTCTTCCTTTAATATATAG 57.493 37.037 0.00 0.00 0.00 1.31
180 181 9.285359 CCCCATCCTCTTCCTTTAATATATAGT 57.715 37.037 0.00 0.00 0.00 2.12
185 186 9.524496 TCCTCTTCCTTTAATATATAGTACGCA 57.476 33.333 0.00 0.00 0.00 5.24
186 187 9.570488 CCTCTTCCTTTAATATATAGTACGCAC 57.430 37.037 0.00 0.00 0.00 5.34
188 189 9.903682 TCTTCCTTTAATATATAGTACGCACAC 57.096 33.333 0.00 0.00 0.00 3.82
189 190 9.909644 CTTCCTTTAATATATAGTACGCACACT 57.090 33.333 0.00 0.00 0.00 3.55
190 191 9.903682 TTCCTTTAATATATAGTACGCACACTC 57.096 33.333 0.00 0.00 0.00 3.51
191 192 8.232513 TCCTTTAATATATAGTACGCACACTCG 58.767 37.037 0.00 0.00 0.00 4.18
192 193 8.019669 CCTTTAATATATAGTACGCACACTCGT 58.980 37.037 0.00 0.00 45.49 4.18
193 194 8.718047 TTTAATATATAGTACGCACACTCGTG 57.282 34.615 0.00 0.00 46.56 4.35
202 203 3.010088 CACACTCGTGCGTATTCGA 57.990 52.632 0.00 0.00 36.06 3.71
254 255 7.898014 AAAAATATTATCTTCTTCCGGGCTT 57.102 32.000 0.00 0.00 0.00 4.35
255 256 8.990163 AAAAATATTATCTTCTTCCGGGCTTA 57.010 30.769 0.00 0.00 0.00 3.09
256 257 9.588096 AAAAATATTATCTTCTTCCGGGCTTAT 57.412 29.630 0.00 0.00 0.00 1.73
257 258 9.588096 AAAATATTATCTTCTTCCGGGCTTATT 57.412 29.630 0.00 0.00 0.00 1.40
258 259 8.567285 AATATTATCTTCTTCCGGGCTTATTG 57.433 34.615 0.00 0.00 0.00 1.90
259 260 2.710096 TCTTCTTCCGGGCTTATTGG 57.290 50.000 0.00 0.00 0.00 3.16
260 261 1.025041 CTTCTTCCGGGCTTATTGGC 58.975 55.000 0.00 0.00 40.96 4.52
267 268 3.346870 GGCTTATTGGCCCCCTCT 58.653 61.111 0.00 0.00 45.92 3.69
268 269 1.620818 GGCTTATTGGCCCCCTCTT 59.379 57.895 0.00 0.00 45.92 2.85
269 270 0.032117 GGCTTATTGGCCCCCTCTTT 60.032 55.000 0.00 0.00 45.92 2.52
270 271 1.622449 GGCTTATTGGCCCCCTCTTTT 60.622 52.381 0.00 0.00 45.92 2.27
271 272 2.187958 GCTTATTGGCCCCCTCTTTTT 58.812 47.619 0.00 0.00 0.00 1.94
302 303 8.687242 TCAAATGTTGACCATTGTAAACTAACA 58.313 29.630 0.00 0.00 43.04 2.41
303 304 9.307121 CAAATGTTGACCATTGTAAACTAACAA 57.693 29.630 0.00 0.00 43.04 2.83
304 305 9.877178 AAATGTTGACCATTGTAAACTAACAAA 57.123 25.926 0.00 0.00 43.04 2.83
305 306 9.528018 AATGTTGACCATTGTAAACTAACAAAG 57.472 29.630 0.00 0.00 42.24 2.77
306 307 8.057536 TGTTGACCATTGTAAACTAACAAAGT 57.942 30.769 0.00 0.00 42.33 2.66
307 308 9.175312 TGTTGACCATTGTAAACTAACAAAGTA 57.825 29.630 0.00 0.00 42.33 2.24
400 401 2.851824 GCACAAACTCGGTCAAACTTTG 59.148 45.455 0.00 0.00 0.00 2.77
406 407 6.710744 ACAAACTCGGTCAAACTTTGAGATAT 59.289 34.615 4.36 0.00 41.01 1.63
416 417 8.360390 GTCAAACTTTGAGATATTTTGACCCTT 58.640 33.333 12.74 0.00 45.32 3.95
428 429 9.586435 GATATTTTGACCCTTCAATAAAGTTGG 57.414 33.333 0.00 0.00 41.50 3.77
431 432 6.648879 TTGACCCTTCAATAAAGTTGGAAG 57.351 37.500 0.00 0.00 36.79 3.46
459 460 2.314071 TTGAAGGACGGAGGGAGTAA 57.686 50.000 0.00 0.00 0.00 2.24
460 461 2.314071 TGAAGGACGGAGGGAGTAAA 57.686 50.000 0.00 0.00 0.00 2.01
462 463 3.178865 TGAAGGACGGAGGGAGTAAATT 58.821 45.455 0.00 0.00 0.00 1.82
491 492 4.497291 TTTTGCAATATACTCCCTCCGT 57.503 40.909 0.00 0.00 0.00 4.69
492 493 4.497291 TTTGCAATATACTCCCTCCGTT 57.503 40.909 0.00 0.00 0.00 4.44
493 494 3.746045 TGCAATATACTCCCTCCGTTC 57.254 47.619 0.00 0.00 0.00 3.95
494 495 2.367567 TGCAATATACTCCCTCCGTTCC 59.632 50.000 0.00 0.00 0.00 3.62
495 496 2.633481 GCAATATACTCCCTCCGTTCCT 59.367 50.000 0.00 0.00 0.00 3.36
496 497 3.830755 GCAATATACTCCCTCCGTTCCTA 59.169 47.826 0.00 0.00 0.00 2.94
497 498 4.282703 GCAATATACTCCCTCCGTTCCTAA 59.717 45.833 0.00 0.00 0.00 2.69
498 499 5.221581 GCAATATACTCCCTCCGTTCCTAAA 60.222 44.000 0.00 0.00 0.00 1.85
499 500 6.520231 GCAATATACTCCCTCCGTTCCTAAAT 60.520 42.308 0.00 0.00 0.00 1.40
500 501 7.310237 GCAATATACTCCCTCCGTTCCTAAATA 60.310 40.741 0.00 0.00 0.00 1.40
501 502 8.759782 CAATATACTCCCTCCGTTCCTAAATAT 58.240 37.037 0.00 0.00 0.00 1.28
504 505 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
505 506 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
506 507 6.614496 ACTCCCTCCGTTCCTAAATATAAGTT 59.386 38.462 0.00 0.00 0.00 2.66
507 508 7.126879 ACTCCCTCCGTTCCTAAATATAAGTTT 59.873 37.037 0.00 0.00 0.00 2.66
508 509 7.864770 TCCCTCCGTTCCTAAATATAAGTTTT 58.135 34.615 0.00 0.00 0.00 2.43
509 510 8.330993 TCCCTCCGTTCCTAAATATAAGTTTTT 58.669 33.333 0.00 0.00 0.00 1.94
533 534 8.603242 TTTTAGAGATTCCAACAAGTGACTAC 57.397 34.615 0.00 0.00 0.00 2.73
534 535 5.808366 AGAGATTCCAACAAGTGACTACA 57.192 39.130 0.00 0.00 0.00 2.74
535 536 6.365970 AGAGATTCCAACAAGTGACTACAT 57.634 37.500 0.00 0.00 0.00 2.29
536 537 7.482169 AGAGATTCCAACAAGTGACTACATA 57.518 36.000 0.00 0.00 0.00 2.29
537 538 7.324178 AGAGATTCCAACAAGTGACTACATAC 58.676 38.462 0.00 0.00 0.00 2.39
538 539 6.100004 AGATTCCAACAAGTGACTACATACG 58.900 40.000 0.00 0.00 0.00 3.06
539 540 5.456548 TTCCAACAAGTGACTACATACGA 57.543 39.130 0.00 0.00 0.00 3.43
540 541 5.456548 TCCAACAAGTGACTACATACGAA 57.543 39.130 0.00 0.00 0.00 3.85
541 542 5.845103 TCCAACAAGTGACTACATACGAAA 58.155 37.500 0.00 0.00 0.00 3.46
542 543 5.693104 TCCAACAAGTGACTACATACGAAAC 59.307 40.000 0.00 0.00 0.00 2.78
543 544 5.464057 CCAACAAGTGACTACATACGAAACA 59.536 40.000 0.00 0.00 0.00 2.83
544 545 6.018588 CCAACAAGTGACTACATACGAAACAA 60.019 38.462 0.00 0.00 0.00 2.83
545 546 7.403421 CAACAAGTGACTACATACGAAACAAA 58.597 34.615 0.00 0.00 0.00 2.83
546 547 7.542534 ACAAGTGACTACATACGAAACAAAA 57.457 32.000 0.00 0.00 0.00 2.44
547 548 8.149973 ACAAGTGACTACATACGAAACAAAAT 57.850 30.769 0.00 0.00 0.00 1.82
548 549 8.067784 ACAAGTGACTACATACGAAACAAAATG 58.932 33.333 0.00 0.00 0.00 2.32
549 550 7.956420 AGTGACTACATACGAAACAAAATGA 57.044 32.000 0.00 0.00 0.00 2.57
550 551 8.018677 AGTGACTACATACGAAACAAAATGAG 57.981 34.615 0.00 0.00 0.00 2.90
551 552 7.656137 AGTGACTACATACGAAACAAAATGAGT 59.344 33.333 0.00 0.00 0.00 3.41
552 553 7.740346 GTGACTACATACGAAACAAAATGAGTG 59.260 37.037 0.00 0.00 0.00 3.51
553 554 7.654116 TGACTACATACGAAACAAAATGAGTGA 59.346 33.333 0.00 0.00 0.00 3.41
554 555 8.373048 ACTACATACGAAACAAAATGAGTGAA 57.627 30.769 0.00 0.00 0.00 3.18
555 556 8.999431 ACTACATACGAAACAAAATGAGTGAAT 58.001 29.630 0.00 0.00 0.00 2.57
558 559 9.773328 ACATACGAAACAAAATGAGTGAATATG 57.227 29.630 0.00 0.00 0.00 1.78
559 560 8.736742 CATACGAAACAAAATGAGTGAATATGC 58.263 33.333 0.00 0.00 0.00 3.14
560 561 6.676950 ACGAAACAAAATGAGTGAATATGCA 58.323 32.000 0.00 0.00 0.00 3.96
561 562 6.582295 ACGAAACAAAATGAGTGAATATGCAC 59.418 34.615 5.60 5.60 39.05 4.57
600 601 5.809464 CGTACATACATACGTTGTAGTCCA 58.191 41.667 13.41 0.00 43.87 4.02
601 602 6.432936 CGTACATACATACGTTGTAGTCCAT 58.567 40.000 13.41 0.00 43.87 3.41
602 603 6.914215 CGTACATACATACGTTGTAGTCCATT 59.086 38.462 13.41 0.00 43.87 3.16
603 604 7.433131 CGTACATACATACGTTGTAGTCCATTT 59.567 37.037 13.41 0.00 43.87 2.32
604 605 9.734620 GTACATACATACGTTGTAGTCCATTTA 57.265 33.333 13.41 0.00 43.87 1.40
606 607 9.656040 ACATACATACGTTGTAGTCCATTTAAA 57.344 29.630 13.41 0.00 43.87 1.52
610 611 9.005777 ACATACGTTGTAGTCCATTTAAAATGT 57.994 29.630 0.00 0.00 36.57 2.71
611 612 9.272901 CATACGTTGTAGTCCATTTAAAATGTG 57.727 33.333 0.00 0.00 0.00 3.21
612 613 7.266922 ACGTTGTAGTCCATTTAAAATGTGT 57.733 32.000 0.00 0.00 0.00 3.72
613 614 8.380743 ACGTTGTAGTCCATTTAAAATGTGTA 57.619 30.769 0.00 0.00 0.00 2.90
614 615 8.838365 ACGTTGTAGTCCATTTAAAATGTGTAA 58.162 29.630 0.00 0.00 0.00 2.41
615 616 9.666626 CGTTGTAGTCCATTTAAAATGTGTAAA 57.333 29.630 0.00 0.00 0.00 2.01
622 623 9.758651 GTCCATTTAAAATGTGTAAAAGGACTT 57.241 29.630 17.65 0.00 46.29 3.01
646 647 3.463048 TTTAGGAACGGAGGGAGTAGT 57.537 47.619 0.00 0.00 0.00 2.73
647 648 4.591321 TTTAGGAACGGAGGGAGTAGTA 57.409 45.455 0.00 0.00 0.00 1.82
648 649 4.803329 TTAGGAACGGAGGGAGTAGTAT 57.197 45.455 0.00 0.00 0.00 2.12
664 665 8.050930 GGGAGTAGTATATTTTTGGGTCTTTCA 58.949 37.037 0.00 0.00 0.00 2.69
713 715 2.007608 GCCTGATGAAACGGTACTTCC 58.992 52.381 0.00 0.00 0.00 3.46
732 734 1.963338 GTCTGCCTGCCACTCACAC 60.963 63.158 0.00 0.00 0.00 3.82
738 740 0.392193 CCTGCCACTCACACTGATCC 60.392 60.000 0.00 0.00 0.00 3.36
1266 1282 1.001158 GGCGAGTACTGCTCCTACATC 60.001 57.143 0.00 0.00 41.10 3.06
1267 1283 1.676529 GCGAGTACTGCTCCTACATCA 59.323 52.381 0.00 0.00 41.10 3.07
1268 1284 2.287308 GCGAGTACTGCTCCTACATCAG 60.287 54.545 0.00 0.00 41.10 2.90
1269 1285 2.287308 CGAGTACTGCTCCTACATCAGC 60.287 54.545 0.00 0.00 41.10 4.26
1270 1286 1.678627 AGTACTGCTCCTACATCAGCG 59.321 52.381 0.00 0.00 38.59 5.18
1271 1287 1.032794 TACTGCTCCTACATCAGCGG 58.967 55.000 0.00 0.00 46.03 5.52
1272 1288 1.593750 CTGCTCCTACATCAGCGGC 60.594 63.158 0.00 0.00 38.59 6.53
1273 1289 2.659897 GCTCCTACATCAGCGGCG 60.660 66.667 0.51 0.51 0.00 6.46
1274 1290 2.028190 CTCCTACATCAGCGGCGG 59.972 66.667 9.78 0.00 0.00 6.13
1353 1369 2.675772 GAGGAGTGGACGGACGGT 60.676 66.667 0.00 0.00 0.00 4.83
1596 1612 1.377725 CTGGCCCTGGTACAAGCAG 60.378 63.158 0.00 0.00 42.96 4.24
1998 2171 5.009010 GCTCTCCTGAATTTTTCACACAGAA 59.991 40.000 0.00 0.00 35.46 3.02
2121 2294 7.973048 TCTAGACATACATTTTGTACTCCCT 57.027 36.000 0.00 0.00 35.42 4.20
2122 2295 8.008513 TCTAGACATACATTTTGTACTCCCTC 57.991 38.462 0.00 0.00 35.42 4.30
2123 2296 5.990668 AGACATACATTTTGTACTCCCTCC 58.009 41.667 0.00 0.00 35.42 4.30
2124 2297 4.766375 ACATACATTTTGTACTCCCTCCG 58.234 43.478 0.00 0.00 35.42 4.63
2125 2298 4.224370 ACATACATTTTGTACTCCCTCCGT 59.776 41.667 0.00 0.00 35.42 4.69
2126 2299 3.329929 ACATTTTGTACTCCCTCCGTC 57.670 47.619 0.00 0.00 0.00 4.79
2127 2300 2.027469 ACATTTTGTACTCCCTCCGTCC 60.027 50.000 0.00 0.00 0.00 4.79
2128 2301 0.604578 TTTTGTACTCCCTCCGTCCG 59.395 55.000 0.00 0.00 0.00 4.79
2129 2302 1.252904 TTTGTACTCCCTCCGTCCGG 61.253 60.000 0.00 0.00 0.00 5.14
2130 2303 2.141011 TTGTACTCCCTCCGTCCGGA 62.141 60.000 0.00 0.00 42.90 5.14
2131 2304 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
2132 2305 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
2133 2306 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2134 2307 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2135 2308 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2136 2309 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2137 2310 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2138 2311 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2139 2312 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2140 2313 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2141 2314 1.205417 TCCGTCCGGAAATACTTGTCC 59.795 52.381 5.23 0.00 42.05 4.02
2142 2315 1.206371 CCGTCCGGAAATACTTGTCCT 59.794 52.381 5.23 0.00 37.50 3.85
2143 2316 2.537401 CGTCCGGAAATACTTGTCCTC 58.463 52.381 5.23 0.00 0.00 3.71
2144 2317 2.537401 GTCCGGAAATACTTGTCCTCG 58.463 52.381 5.23 0.00 0.00 4.63
2145 2318 2.165030 GTCCGGAAATACTTGTCCTCGA 59.835 50.000 5.23 0.00 0.00 4.04
2146 2319 2.827322 TCCGGAAATACTTGTCCTCGAA 59.173 45.455 0.00 0.00 0.00 3.71
2147 2320 3.258872 TCCGGAAATACTTGTCCTCGAAA 59.741 43.478 0.00 0.00 0.00 3.46
2148 2321 4.081309 TCCGGAAATACTTGTCCTCGAAAT 60.081 41.667 0.00 0.00 0.00 2.17
2149 2322 4.034048 CCGGAAATACTTGTCCTCGAAATG 59.966 45.833 0.00 0.00 0.00 2.32
2150 2323 4.034048 CGGAAATACTTGTCCTCGAAATGG 59.966 45.833 0.00 0.00 0.00 3.16
2151 2324 4.941873 GGAAATACTTGTCCTCGAAATGGT 59.058 41.667 0.00 0.00 0.00 3.55
2152 2325 5.414765 GGAAATACTTGTCCTCGAAATGGTT 59.585 40.000 0.00 0.00 0.00 3.67
2153 2326 5.880054 AATACTTGTCCTCGAAATGGTTG 57.120 39.130 0.00 0.00 0.00 3.77
2154 2327 3.208747 ACTTGTCCTCGAAATGGTTGT 57.791 42.857 0.00 0.00 0.00 3.32
2155 2328 4.345859 ACTTGTCCTCGAAATGGTTGTA 57.654 40.909 0.00 0.00 0.00 2.41
2156 2329 4.906618 ACTTGTCCTCGAAATGGTTGTAT 58.093 39.130 0.00 0.00 0.00 2.29
2157 2330 4.935808 ACTTGTCCTCGAAATGGTTGTATC 59.064 41.667 0.00 0.00 0.00 2.24
2158 2331 4.819105 TGTCCTCGAAATGGTTGTATCT 57.181 40.909 0.00 0.00 0.00 1.98
2159 2332 5.925506 TGTCCTCGAAATGGTTGTATCTA 57.074 39.130 0.00 0.00 0.00 1.98
2160 2333 5.902681 TGTCCTCGAAATGGTTGTATCTAG 58.097 41.667 0.00 0.00 0.00 2.43
2161 2334 5.655090 TGTCCTCGAAATGGTTGTATCTAGA 59.345 40.000 0.00 0.00 0.00 2.43
2162 2335 5.978322 GTCCTCGAAATGGTTGTATCTAGAC 59.022 44.000 0.00 0.00 0.00 2.59
2163 2336 5.892119 TCCTCGAAATGGTTGTATCTAGACT 59.108 40.000 0.00 0.00 0.00 3.24
2164 2337 6.380274 TCCTCGAAATGGTTGTATCTAGACTT 59.620 38.462 0.00 0.00 0.00 3.01
2165 2338 7.558807 TCCTCGAAATGGTTGTATCTAGACTTA 59.441 37.037 0.00 0.00 0.00 2.24
2166 2339 8.361139 CCTCGAAATGGTTGTATCTAGACTTAT 58.639 37.037 0.00 0.00 0.00 1.73
2167 2340 9.751542 CTCGAAATGGTTGTATCTAGACTTATT 57.248 33.333 0.00 0.00 0.00 1.40
2206 2379 9.699410 ACATCCATTTTATCCATTTCTAAGACA 57.301 29.630 0.00 0.00 0.00 3.41
2209 2382 9.753674 TCCATTTTATCCATTTCTAAGACAAGT 57.246 29.630 0.00 0.00 0.00 3.16
2216 2389 7.843490 TCCATTTCTAAGACAAGTATTTCCG 57.157 36.000 0.00 0.00 0.00 4.30
2217 2390 6.821665 TCCATTTCTAAGACAAGTATTTCCGG 59.178 38.462 0.00 0.00 0.00 5.14
2218 2391 6.821665 CCATTTCTAAGACAAGTATTTCCGGA 59.178 38.462 0.00 0.00 0.00 5.14
2219 2392 7.201617 CCATTTCTAAGACAAGTATTTCCGGAC 60.202 40.741 1.83 0.00 0.00 4.79
2220 2393 4.990257 TCTAAGACAAGTATTTCCGGACG 58.010 43.478 1.83 0.00 0.00 4.79
2221 2394 2.667473 AGACAAGTATTTCCGGACGG 57.333 50.000 1.83 3.96 0.00 4.79
2222 2395 2.173519 AGACAAGTATTTCCGGACGGA 58.826 47.619 1.83 9.76 43.52 4.69
2223 2396 2.165845 AGACAAGTATTTCCGGACGGAG 59.834 50.000 13.64 3.15 46.06 4.63
2224 2397 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2225 2398 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2226 2399 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2227 2400 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2228 2401 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
2260 2433 3.372206 GCGATACAGGCCAAGCTAATATG 59.628 47.826 5.01 0.00 0.00 1.78
2272 2445 5.069516 CCAAGCTAATATGGCATTTTGTCCT 59.930 40.000 4.78 0.00 0.00 3.85
2337 2510 1.529010 CTCTTGGGTTGCTGCCACA 60.529 57.895 6.19 0.00 0.00 4.17
2358 2531 1.405526 GGCACCGATAGAGCTTCAACA 60.406 52.381 0.00 0.00 37.16 3.33
2375 2548 4.196193 TCAACACATCCGATTGGGTAATC 58.804 43.478 0.00 0.00 39.44 1.75
2379 2552 4.141505 ACACATCCGATTGGGTAATCATCA 60.142 41.667 0.00 0.00 42.27 3.07
2388 2561 3.804036 TGGGTAATCATCACGGAATCAC 58.196 45.455 0.00 0.00 0.00 3.06
2437 2610 1.815003 GAGTTTGGCTGCTTGCATACT 59.185 47.619 0.00 0.00 45.15 2.12
2443 2616 4.687901 TGGCTGCTTGCATACTAAGATA 57.312 40.909 0.00 0.00 45.15 1.98
2444 2617 5.233083 TGGCTGCTTGCATACTAAGATAT 57.767 39.130 0.00 0.00 45.15 1.63
2446 2619 5.221702 TGGCTGCTTGCATACTAAGATATCA 60.222 40.000 5.32 0.00 45.15 2.15
2447 2620 5.121454 GGCTGCTTGCATACTAAGATATCAC 59.879 44.000 5.32 0.00 45.15 3.06
2448 2621 5.931146 GCTGCTTGCATACTAAGATATCACT 59.069 40.000 5.32 0.00 42.31 3.41
2449 2622 6.090628 GCTGCTTGCATACTAAGATATCACTC 59.909 42.308 5.32 0.00 42.31 3.51
2450 2623 7.295322 TGCTTGCATACTAAGATATCACTCT 57.705 36.000 5.32 0.00 0.00 3.24
2451 2624 7.730084 TGCTTGCATACTAAGATATCACTCTT 58.270 34.615 5.32 0.00 38.90 2.85
2452 2625 8.206867 TGCTTGCATACTAAGATATCACTCTTT 58.793 33.333 5.32 0.00 36.82 2.52
2453 2626 9.050601 GCTTGCATACTAAGATATCACTCTTTT 57.949 33.333 5.32 0.00 36.82 2.27
2498 2714 6.652481 GCAGCATATAGATAGCTTTTCCTTGA 59.348 38.462 0.00 0.00 36.26 3.02
2529 2751 1.004044 CAGATTGGTTGAGGCTGGTCT 59.996 52.381 0.00 0.00 0.00 3.85
2530 2752 1.004044 AGATTGGTTGAGGCTGGTCTG 59.996 52.381 0.00 0.00 0.00 3.51
2536 2758 0.251354 TTGAGGCTGGTCTGATCTGC 59.749 55.000 10.93 10.93 0.00 4.26
2581 2803 5.786401 ACTATTCTTCACATGCTCGTTTC 57.214 39.130 0.00 0.00 0.00 2.78
2600 2822 6.095300 TCGTTTCAATGTATCATGGATTTGCT 59.905 34.615 0.00 0.00 0.00 3.91
2623 2845 5.567037 ACCAGGCATCTATATTGCAAGTA 57.433 39.130 4.94 0.00 41.95 2.24
2632 2854 7.604164 GCATCTATATTGCAAGTACCAGTATGT 59.396 37.037 4.94 0.00 39.90 2.29
2654 2876 7.633193 TGTATTCATACATTACACCAAACCC 57.367 36.000 0.00 0.00 38.28 4.11
2677 2899 5.178252 CCACAAATGATTAGAGACATAGCCG 59.822 44.000 0.00 0.00 0.00 5.52
2713 2935 4.985538 TCACCAAGCTTAAGAACTGGAAT 58.014 39.130 19.25 1.74 0.00 3.01
2796 3199 5.707242 TTGTACAACTAGACAGTCCTCTG 57.293 43.478 3.59 0.00 46.18 3.35
2810 3213 1.123928 CCTCTGTGGTAGGTGATCCC 58.876 60.000 0.00 0.00 0.00 3.85
2878 3281 5.720371 TGAAGTTGGGTAATTTCATGTGG 57.280 39.130 0.00 0.00 37.53 4.17
2896 3299 1.621317 TGGCGCTGATCCCGAATAATA 59.379 47.619 7.64 0.00 0.00 0.98
2937 3343 9.179909 TGGTTTGTTCTTTTGATCTTTACTACA 57.820 29.630 0.00 0.00 0.00 2.74
2973 3379 2.795175 AGACTGTGACAACTACGGTG 57.205 50.000 0.00 0.00 37.75 4.94
2977 3383 0.249699 TGTGACAACTACGGTGCAGG 60.250 55.000 0.00 0.00 0.00 4.85
2987 3393 1.165270 ACGGTGCAGGCTATTGTTTC 58.835 50.000 0.00 0.00 0.00 2.78
3014 3420 7.585440 TCTTCTTCATTTCAATCCCCATCATA 58.415 34.615 0.00 0.00 0.00 2.15
3021 3454 8.423349 TCATTTCAATCCCCATCATATTGTTTC 58.577 33.333 0.00 0.00 33.35 2.78
3072 3511 5.169295 GTGATTTCCTACTAAACAGCGACT 58.831 41.667 0.00 0.00 0.00 4.18
3086 3525 2.799412 CAGCGACTAATGGAGCTCAATC 59.201 50.000 17.19 0.00 37.94 2.67
3189 3628 3.121929 TCCTGTGGATCCTAGCTTTCT 57.878 47.619 14.23 0.00 0.00 2.52
3197 3636 3.118738 GGATCCTAGCTTTCTTTCCGTGA 60.119 47.826 3.84 0.00 0.00 4.35
3200 3639 4.906618 TCCTAGCTTTCTTTCCGTGATTT 58.093 39.130 0.00 0.00 0.00 2.17
3215 3654 4.274069 CGTGATTTGCTACATGTGTATGC 58.726 43.478 9.11 8.18 37.85 3.14
3230 3669 5.679601 TGTGTATGCATTTATGGTGCTCTA 58.320 37.500 3.54 0.00 42.92 2.43
3395 3836 2.224769 ACGCCATCTGGAAAAAGGAAGA 60.225 45.455 0.00 0.00 37.39 2.87
3492 3933 3.997021 AGCTTCTGAAAGTATGTCGGTTG 59.003 43.478 0.00 0.00 34.79 3.77
3517 3958 1.630369 TCTCCCAAACTCCATCCTGTG 59.370 52.381 0.00 0.00 0.00 3.66
3524 3965 4.157289 CCAAACTCCATCCTGTGATTTCTG 59.843 45.833 0.00 0.00 0.00 3.02
3550 3991 4.010349 GGCCTGTTCAGTATTTAGCTTGT 58.990 43.478 0.00 0.00 0.00 3.16
3571 4012 4.022935 TGTGCTTACATCTTTTCTTGCCTG 60.023 41.667 0.00 0.00 0.00 4.85
3657 4100 4.095483 GGAAATCTAACCAGATGTGCTGTG 59.905 45.833 0.00 0.00 40.81 3.66
3917 4360 7.800380 GCAGTATACATAAGATGATTTGTGTGC 59.200 37.037 5.50 0.00 34.74 4.57
4031 4474 6.271391 TGACCAGTCAGGAAGGATAACTTAAA 59.729 38.462 0.00 0.00 41.22 1.52
4041 4484 6.183360 GGAAGGATAACTTAAATCACAAGGGC 60.183 42.308 0.00 0.00 40.21 5.19
4043 4486 4.879545 GGATAACTTAAATCACAAGGGCGA 59.120 41.667 0.00 0.00 0.00 5.54
4047 4490 6.436843 AACTTAAATCACAAGGGCGATTAG 57.563 37.500 0.00 0.00 31.65 1.73
4071 4514 3.894427 TGTGTTGTAGCATTGGGACATTT 59.106 39.130 0.00 0.00 39.30 2.32
4291 4734 7.224297 AGTTGAAGAGCCTTTGTATAAAGTCA 58.776 34.615 10.61 5.02 41.36 3.41
4362 4805 9.719279 GTATTGTGCTCTAGTAGTAACTTGTAG 57.281 37.037 0.00 0.00 37.15 2.74
4419 4862 6.074648 TGGAGAAAGGCATTTTTCTTCCTTA 58.925 36.000 13.20 0.00 45.00 2.69
4427 4870 4.394795 CATTTTTCTTCCTTACGTGCTCG 58.605 43.478 6.63 6.63 43.34 5.03
4511 4954 3.118738 ACATTAACAGCTAGAGAACCGGG 60.119 47.826 6.32 0.00 0.00 5.73
4534 4977 1.330234 TGCACTACTGTGGAACCGTA 58.670 50.000 0.00 0.00 41.50 4.02
4538 4981 2.105766 ACTACTGTGGAACCGTATCCC 58.894 52.381 0.00 0.00 35.96 3.85
4547 4990 2.467838 GAACCGTATCCCGCTTAGAAC 58.532 52.381 0.00 0.00 34.38 3.01
4598 5046 4.342092 ACTGAATGCAACCTGTTAGCTTTT 59.658 37.500 0.00 0.00 0.00 2.27
4607 5091 1.197721 CTGTTAGCTTTTCTGTGGCCG 59.802 52.381 0.00 0.00 0.00 6.13
4635 5119 3.190118 GCATTCTGAACTCCTGAACCTTG 59.810 47.826 0.00 0.00 35.90 3.61
4637 5121 3.753294 TCTGAACTCCTGAACCTTGAC 57.247 47.619 0.00 0.00 0.00 3.18
4662 5146 1.532437 TGCTGCTGAGATTTGTCAACG 59.468 47.619 0.00 0.00 0.00 4.10
4665 5149 3.803555 CTGCTGAGATTTGTCAACGAAC 58.196 45.455 0.00 0.00 0.00 3.95
4674 5158 0.318699 TGTCAACGAACTGCGAGAGG 60.319 55.000 0.00 0.00 44.57 3.69
4731 5215 1.331756 CTGGTGTTGTGTCAGTTGAGC 59.668 52.381 0.00 0.00 0.00 4.26
4747 5232 5.791974 CAGTTGAGCAAATTGAGTATTCGTG 59.208 40.000 0.00 0.00 0.00 4.35
4749 5234 3.689161 TGAGCAAATTGAGTATTCGTGGG 59.311 43.478 0.00 0.00 0.00 4.61
4757 5242 3.822940 TGAGTATTCGTGGGTTTTGGTT 58.177 40.909 0.00 0.00 0.00 3.67
4761 5246 0.741915 TTCGTGGGTTTTGGTTCAGC 59.258 50.000 0.00 0.00 0.00 4.26
4791 5276 1.228245 ACGGTGGCATCTGCAACTT 60.228 52.632 9.45 0.00 44.30 2.66
4792 5277 0.823356 ACGGTGGCATCTGCAACTTT 60.823 50.000 9.45 0.00 44.30 2.66
4793 5278 0.109597 CGGTGGCATCTGCAACTTTC 60.110 55.000 9.45 0.00 44.30 2.62
4794 5279 0.961019 GGTGGCATCTGCAACTTTCA 59.039 50.000 9.45 0.00 44.30 2.69
4795 5280 1.068055 GGTGGCATCTGCAACTTTCAG 60.068 52.381 9.45 0.00 44.30 3.02
4796 5281 1.881973 GTGGCATCTGCAACTTTCAGA 59.118 47.619 4.33 0.00 41.68 3.27
4798 5283 1.135460 GGCATCTGCAACTTTCAGAGC 60.135 52.381 4.33 2.13 43.02 4.09
4799 5284 1.538512 GCATCTGCAACTTTCAGAGCA 59.461 47.619 0.00 0.00 43.02 4.26
4801 5286 3.769228 CTGCAACTTTCAGAGCAGC 57.231 52.632 0.00 0.00 46.51 5.25
4802 5287 0.240411 CTGCAACTTTCAGAGCAGCC 59.760 55.000 0.00 0.00 46.51 4.85
4803 5288 0.466007 TGCAACTTTCAGAGCAGCCA 60.466 50.000 0.00 0.00 32.48 4.75
4804 5289 0.240411 GCAACTTTCAGAGCAGCCAG 59.760 55.000 0.00 0.00 0.00 4.85
4805 5290 1.602311 CAACTTTCAGAGCAGCCAGT 58.398 50.000 0.00 0.00 0.00 4.00
4806 5291 2.771089 CAACTTTCAGAGCAGCCAGTA 58.229 47.619 0.00 0.00 0.00 2.74
4807 5292 2.740981 CAACTTTCAGAGCAGCCAGTAG 59.259 50.000 0.00 0.00 0.00 2.57
4808 5293 1.974236 ACTTTCAGAGCAGCCAGTAGT 59.026 47.619 0.00 0.00 0.00 2.73
4809 5294 3.165875 ACTTTCAGAGCAGCCAGTAGTA 58.834 45.455 0.00 0.00 0.00 1.82
4819 5614 3.119566 GCAGCCAGTAGTACGTAGTTTCT 60.120 47.826 8.48 5.24 37.78 2.52
4821 5616 4.857588 CAGCCAGTAGTACGTAGTTTCTTG 59.142 45.833 8.48 5.38 37.78 3.02
4841 5748 2.092267 TGCCCACTTGCATATGTGATCT 60.092 45.455 14.09 0.00 36.04 2.75
4874 5781 2.168728 GCCGGTCAATCTCCTCTACTTT 59.831 50.000 1.90 0.00 0.00 2.66
4879 5786 5.163509 CGGTCAATCTCCTCTACTTTCATCA 60.164 44.000 0.00 0.00 0.00 3.07
4880 5787 6.628175 CGGTCAATCTCCTCTACTTTCATCAA 60.628 42.308 0.00 0.00 0.00 2.57
4881 5788 7.278875 GGTCAATCTCCTCTACTTTCATCAAT 58.721 38.462 0.00 0.00 0.00 2.57
4952 5864 6.708949 GTCTATAACAATCTTAATTGCCCGGA 59.291 38.462 0.73 0.00 45.16 5.14
4975 5887 1.104630 GGTCTCGGGAACTGTCCTAG 58.895 60.000 0.00 0.00 44.28 3.02
4979 5891 2.168496 CTCGGGAACTGTCCTAGTCAA 58.832 52.381 0.00 0.00 44.28 3.18
4988 5900 1.618837 TGTCCTAGTCAAGCACCTGAC 59.381 52.381 5.68 5.68 45.10 3.51
5038 5950 2.240500 GCCGAGTGGATCATGACGC 61.241 63.158 0.00 0.00 37.49 5.19
5053 5965 1.084289 GACGCTTCCGCCTAAACAAT 58.916 50.000 0.00 0.00 38.22 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.117888 TCCACATCTCCTTTTAGGATGCC 60.118 47.826 0.00 0.00 44.81 4.40
1 2 4.133078 CTCCACATCTCCTTTTAGGATGC 58.867 47.826 0.00 0.00 44.81 3.91
2 3 4.133078 GCTCCACATCTCCTTTTAGGATG 58.867 47.826 0.00 0.00 44.81 3.51
4 5 2.505819 GGCTCCACATCTCCTTTTAGGA 59.494 50.000 0.00 0.00 43.43 2.94
5 6 2.507471 AGGCTCCACATCTCCTTTTAGG 59.493 50.000 0.00 0.00 36.46 2.69
6 7 3.922171 AGGCTCCACATCTCCTTTTAG 57.078 47.619 0.00 0.00 0.00 1.85
7 8 4.348168 GGATAGGCTCCACATCTCCTTTTA 59.652 45.833 0.00 0.00 44.26 1.52
8 9 3.137360 GGATAGGCTCCACATCTCCTTTT 59.863 47.826 0.00 0.00 44.26 2.27
9 10 2.708325 GGATAGGCTCCACATCTCCTTT 59.292 50.000 0.00 0.00 44.26 3.11
10 11 2.334023 GGATAGGCTCCACATCTCCTT 58.666 52.381 0.00 0.00 44.26 3.36
11 12 2.022718 GGATAGGCTCCACATCTCCT 57.977 55.000 0.00 0.00 44.26 3.69
20 21 1.608046 CCCTCCGAGGATAGGCTCC 60.608 68.421 16.69 0.00 45.33 4.70
21 22 2.279810 GCCCTCCGAGGATAGGCTC 61.280 68.421 16.69 0.00 37.67 4.70
22 23 2.203714 GCCCTCCGAGGATAGGCT 60.204 66.667 16.69 0.00 37.67 4.58
23 24 0.968393 CTAGCCCTCCGAGGATAGGC 60.968 65.000 16.69 19.85 41.35 3.93
24 25 3.274601 CTAGCCCTCCGAGGATAGG 57.725 63.158 16.69 0.00 41.35 2.57
26 27 1.497716 TGAACTAGCCCTCCGAGGATA 59.502 52.381 16.69 7.49 37.67 2.59
27 28 0.261991 TGAACTAGCCCTCCGAGGAT 59.738 55.000 16.69 6.68 37.67 3.24
28 29 0.395862 CTGAACTAGCCCTCCGAGGA 60.396 60.000 16.69 0.00 37.67 3.71
29 30 0.684805 ACTGAACTAGCCCTCCGAGG 60.685 60.000 7.56 7.56 34.30 4.63
30 31 0.457851 CACTGAACTAGCCCTCCGAG 59.542 60.000 0.00 0.00 0.00 4.63
31 32 0.970937 CCACTGAACTAGCCCTCCGA 60.971 60.000 0.00 0.00 0.00 4.55
32 33 1.517832 CCACTGAACTAGCCCTCCG 59.482 63.158 0.00 0.00 0.00 4.63
33 34 1.222113 GCCACTGAACTAGCCCTCC 59.778 63.158 0.00 0.00 0.00 4.30
34 35 1.222113 GGCCACTGAACTAGCCCTC 59.778 63.158 0.00 0.00 39.60 4.30
35 36 3.404773 GGCCACTGAACTAGCCCT 58.595 61.111 0.00 0.00 39.60 5.19
45 46 1.908340 CTTCTCCCCTCAGGCCACTG 61.908 65.000 5.01 0.00 46.30 3.66
46 47 1.614824 CTTCTCCCCTCAGGCCACT 60.615 63.158 5.01 0.00 34.51 4.00
47 48 1.492993 AACTTCTCCCCTCAGGCCAC 61.493 60.000 5.01 0.00 34.51 5.01
48 49 0.118346 TAACTTCTCCCCTCAGGCCA 59.882 55.000 5.01 0.00 34.51 5.36
49 50 0.833949 CTAACTTCTCCCCTCAGGCC 59.166 60.000 0.00 0.00 34.51 5.19
50 51 0.833949 CCTAACTTCTCCCCTCAGGC 59.166 60.000 0.00 0.00 34.51 4.85
51 52 0.833949 GCCTAACTTCTCCCCTCAGG 59.166 60.000 0.00 0.00 0.00 3.86
52 53 1.872773 AGCCTAACTTCTCCCCTCAG 58.127 55.000 0.00 0.00 0.00 3.35
53 54 2.585900 TCTAGCCTAACTTCTCCCCTCA 59.414 50.000 0.00 0.00 0.00 3.86
54 55 3.315880 TCTAGCCTAACTTCTCCCCTC 57.684 52.381 0.00 0.00 0.00 4.30
55 56 4.288324 AATCTAGCCTAACTTCTCCCCT 57.712 45.455 0.00 0.00 0.00 4.79
56 57 5.011227 CACTAATCTAGCCTAACTTCTCCCC 59.989 48.000 0.00 0.00 0.00 4.81
57 58 5.599242 ACACTAATCTAGCCTAACTTCTCCC 59.401 44.000 0.00 0.00 0.00 4.30
58 59 6.718522 ACACTAATCTAGCCTAACTTCTCC 57.281 41.667 0.00 0.00 0.00 3.71
59 60 6.913673 CGAACACTAATCTAGCCTAACTTCTC 59.086 42.308 0.00 0.00 0.00 2.87
60 61 6.183360 CCGAACACTAATCTAGCCTAACTTCT 60.183 42.308 0.00 0.00 0.00 2.85
61 62 5.978322 CCGAACACTAATCTAGCCTAACTTC 59.022 44.000 0.00 0.00 0.00 3.01
62 63 5.681695 GCCGAACACTAATCTAGCCTAACTT 60.682 44.000 0.00 0.00 0.00 2.66
63 64 4.202131 GCCGAACACTAATCTAGCCTAACT 60.202 45.833 0.00 0.00 0.00 2.24
64 65 4.049869 GCCGAACACTAATCTAGCCTAAC 58.950 47.826 0.00 0.00 0.00 2.34
65 66 3.958798 AGCCGAACACTAATCTAGCCTAA 59.041 43.478 0.00 0.00 0.00 2.69
66 67 3.563223 AGCCGAACACTAATCTAGCCTA 58.437 45.455 0.00 0.00 0.00 3.93
67 68 2.389715 AGCCGAACACTAATCTAGCCT 58.610 47.619 0.00 0.00 0.00 4.58
68 69 2.892784 AGCCGAACACTAATCTAGCC 57.107 50.000 0.00 0.00 0.00 3.93
69 70 3.242446 GCAAAGCCGAACACTAATCTAGC 60.242 47.826 0.00 0.00 0.00 3.42
70 71 3.000322 CGCAAAGCCGAACACTAATCTAG 60.000 47.826 0.00 0.00 0.00 2.43
71 72 2.927477 CGCAAAGCCGAACACTAATCTA 59.073 45.455 0.00 0.00 0.00 1.98
72 73 1.732259 CGCAAAGCCGAACACTAATCT 59.268 47.619 0.00 0.00 0.00 2.40
73 74 1.730064 TCGCAAAGCCGAACACTAATC 59.270 47.619 0.00 0.00 33.77 1.75
74 75 1.732259 CTCGCAAAGCCGAACACTAAT 59.268 47.619 0.00 0.00 36.72 1.73
75 76 1.144969 CTCGCAAAGCCGAACACTAA 58.855 50.000 0.00 0.00 36.72 2.24
76 77 0.032952 ACTCGCAAAGCCGAACACTA 59.967 50.000 0.00 0.00 36.72 2.74
77 78 1.227556 ACTCGCAAAGCCGAACACT 60.228 52.632 0.00 0.00 36.72 3.55
78 79 1.082756 CACTCGCAAAGCCGAACAC 60.083 57.895 0.00 0.00 36.72 3.32
79 80 2.250939 CCACTCGCAAAGCCGAACA 61.251 57.895 0.00 0.00 36.72 3.18
80 81 1.901650 CTCCACTCGCAAAGCCGAAC 61.902 60.000 0.00 0.00 36.72 3.95
81 82 1.667830 CTCCACTCGCAAAGCCGAA 60.668 57.895 0.00 0.00 36.72 4.30
82 83 2.048222 CTCCACTCGCAAAGCCGA 60.048 61.111 0.00 0.00 35.68 5.54
83 84 1.961277 AACTCCACTCGCAAAGCCG 60.961 57.895 0.00 0.00 0.00 5.52
84 85 1.576421 CAACTCCACTCGCAAAGCC 59.424 57.895 0.00 0.00 0.00 4.35
85 86 1.166531 ACCAACTCCACTCGCAAAGC 61.167 55.000 0.00 0.00 0.00 3.51
86 87 1.264288 GAACCAACTCCACTCGCAAAG 59.736 52.381 0.00 0.00 0.00 2.77
87 88 1.134220 AGAACCAACTCCACTCGCAAA 60.134 47.619 0.00 0.00 0.00 3.68
88 89 0.468226 AGAACCAACTCCACTCGCAA 59.532 50.000 0.00 0.00 0.00 4.85
89 90 0.033504 GAGAACCAACTCCACTCGCA 59.966 55.000 0.00 0.00 0.00 5.10
90 91 0.033504 TGAGAACCAACTCCACTCGC 59.966 55.000 0.00 0.00 36.22 5.03
91 92 2.289072 ACATGAGAACCAACTCCACTCG 60.289 50.000 0.00 0.00 36.22 4.18
92 93 3.409026 ACATGAGAACCAACTCCACTC 57.591 47.619 0.00 0.00 36.22 3.51
93 94 4.780021 AGATACATGAGAACCAACTCCACT 59.220 41.667 0.00 0.00 36.22 4.00
94 95 5.091261 AGATACATGAGAACCAACTCCAC 57.909 43.478 0.00 0.00 36.22 4.02
95 96 5.762179 AAGATACATGAGAACCAACTCCA 57.238 39.130 0.00 0.00 36.22 3.86
96 97 5.940470 ACAAAGATACATGAGAACCAACTCC 59.060 40.000 0.00 0.00 36.22 3.85
97 98 8.443937 GTTACAAAGATACATGAGAACCAACTC 58.556 37.037 0.00 0.00 37.42 3.01
98 99 7.936847 TGTTACAAAGATACATGAGAACCAACT 59.063 33.333 0.00 0.00 0.00 3.16
99 100 8.094798 TGTTACAAAGATACATGAGAACCAAC 57.905 34.615 0.00 0.00 0.00 3.77
100 101 8.862325 ATGTTACAAAGATACATGAGAACCAA 57.138 30.769 0.00 0.00 31.66 3.67
109 110 7.119992 TGGCGTTTACATGTTACAAAGATACAT 59.880 33.333 2.30 0.00 32.98 2.29
110 111 6.427242 TGGCGTTTACATGTTACAAAGATACA 59.573 34.615 2.30 0.00 0.00 2.29
111 112 6.833839 TGGCGTTTACATGTTACAAAGATAC 58.166 36.000 2.30 0.00 0.00 2.24
112 113 7.041303 TGTTGGCGTTTACATGTTACAAAGATA 60.041 33.333 2.30 0.00 0.00 1.98
113 114 5.950758 TGGCGTTTACATGTTACAAAGAT 57.049 34.783 2.30 0.00 0.00 2.40
114 115 5.066117 TGTTGGCGTTTACATGTTACAAAGA 59.934 36.000 2.30 0.00 0.00 2.52
115 116 5.274718 TGTTGGCGTTTACATGTTACAAAG 58.725 37.500 2.30 0.00 0.00 2.77
116 117 5.244785 TGTTGGCGTTTACATGTTACAAA 57.755 34.783 2.30 0.00 0.00 2.83
117 118 4.895224 TGTTGGCGTTTACATGTTACAA 57.105 36.364 2.30 0.00 0.00 2.41
118 119 4.320567 CCATGTTGGCGTTTACATGTTACA 60.321 41.667 2.30 0.00 46.40 2.41
119 120 4.083217 TCCATGTTGGCGTTTACATGTTAC 60.083 41.667 2.30 1.94 46.40 2.50
120 121 4.072839 TCCATGTTGGCGTTTACATGTTA 58.927 39.130 2.30 0.00 46.40 2.41
121 122 2.887783 TCCATGTTGGCGTTTACATGTT 59.112 40.909 2.30 0.00 46.40 2.71
122 123 2.487762 CTCCATGTTGGCGTTTACATGT 59.512 45.455 18.06 2.69 46.40 3.21
124 125 2.091541 CCTCCATGTTGGCGTTTACAT 58.908 47.619 0.00 0.00 37.47 2.29
125 126 1.529226 CCTCCATGTTGGCGTTTACA 58.471 50.000 0.00 0.00 37.47 2.41
126 127 0.808755 CCCTCCATGTTGGCGTTTAC 59.191 55.000 0.00 0.00 37.47 2.01
127 128 0.322997 CCCCTCCATGTTGGCGTTTA 60.323 55.000 0.00 0.00 37.47 2.01
128 129 1.606313 CCCCTCCATGTTGGCGTTT 60.606 57.895 0.00 0.00 37.47 3.60
129 130 2.035626 CCCCTCCATGTTGGCGTT 59.964 61.111 0.00 0.00 37.47 4.84
130 131 4.740822 GCCCCTCCATGTTGGCGT 62.741 66.667 0.00 0.00 37.47 5.68
132 133 2.440980 GAGCCCCTCCATGTTGGC 60.441 66.667 4.39 4.39 44.35 4.52
133 134 0.682209 CAAGAGCCCCTCCATGTTGG 60.682 60.000 0.00 0.00 39.43 3.77
134 135 0.038744 ACAAGAGCCCCTCCATGTTG 59.961 55.000 0.00 0.00 30.41 3.33
135 136 0.329596 GACAAGAGCCCCTCCATGTT 59.670 55.000 0.00 0.00 33.32 2.71
136 137 1.566298 GGACAAGAGCCCCTCCATGT 61.566 60.000 0.00 2.19 35.00 3.21
137 138 1.225704 GGACAAGAGCCCCTCCATG 59.774 63.158 0.00 0.00 0.00 3.66
138 139 2.003548 GGGACAAGAGCCCCTCCAT 61.004 63.158 0.00 0.00 39.81 3.41
139 140 2.610859 GGGACAAGAGCCCCTCCA 60.611 66.667 0.00 0.00 39.81 3.86
152 153 4.797912 ATTAAAGGAAGAGGATGGGGAC 57.202 45.455 0.00 0.00 0.00 4.46
153 154 9.507381 CTATATATTAAAGGAAGAGGATGGGGA 57.493 37.037 0.00 0.00 0.00 4.81
154 155 9.285359 ACTATATATTAAAGGAAGAGGATGGGG 57.715 37.037 0.00 0.00 0.00 4.96
159 160 9.524496 TGCGTACTATATATTAAAGGAAGAGGA 57.476 33.333 0.00 0.00 0.00 3.71
160 161 9.570488 GTGCGTACTATATATTAAAGGAAGAGG 57.430 37.037 0.00 0.00 0.00 3.69
162 163 9.903682 GTGTGCGTACTATATATTAAAGGAAGA 57.096 33.333 4.97 0.00 0.00 2.87
163 164 9.909644 AGTGTGCGTACTATATATTAAAGGAAG 57.090 33.333 4.97 0.00 0.00 3.46
164 165 9.903682 GAGTGTGCGTACTATATATTAAAGGAA 57.096 33.333 4.97 0.00 0.00 3.36
165 166 8.232513 CGAGTGTGCGTACTATATATTAAAGGA 58.767 37.037 4.97 0.00 0.00 3.36
166 167 8.019669 ACGAGTGTGCGTACTATATATTAAAGG 58.980 37.037 4.97 0.00 43.61 3.11
167 168 8.838009 CACGAGTGTGCGTACTATATATTAAAG 58.162 37.037 4.97 0.00 43.59 1.85
168 169 8.718047 CACGAGTGTGCGTACTATATATTAAA 57.282 34.615 4.97 0.00 43.59 1.52
184 185 0.907837 CTCGAATACGCACGAGTGTG 59.092 55.000 14.40 14.40 46.90 3.82
185 186 3.307829 CTCGAATACGCACGAGTGT 57.692 52.632 4.12 4.12 46.90 3.55
230 231 7.898014 AAGCCCGGAAGAAGATAATATTTTT 57.102 32.000 0.73 0.00 0.00 1.94
231 232 9.588096 AATAAGCCCGGAAGAAGATAATATTTT 57.412 29.630 0.73 0.00 0.00 1.82
232 233 9.014297 CAATAAGCCCGGAAGAAGATAATATTT 57.986 33.333 0.73 0.00 0.00 1.40
233 234 7.611855 CCAATAAGCCCGGAAGAAGATAATATT 59.388 37.037 0.73 0.00 0.00 1.28
234 235 7.112779 CCAATAAGCCCGGAAGAAGATAATAT 58.887 38.462 0.73 0.00 0.00 1.28
235 236 6.472887 CCAATAAGCCCGGAAGAAGATAATA 58.527 40.000 0.73 0.00 0.00 0.98
236 237 5.316987 CCAATAAGCCCGGAAGAAGATAAT 58.683 41.667 0.73 0.00 0.00 1.28
237 238 4.714632 CCAATAAGCCCGGAAGAAGATAA 58.285 43.478 0.73 0.00 0.00 1.75
238 239 3.496160 GCCAATAAGCCCGGAAGAAGATA 60.496 47.826 0.73 0.00 0.00 1.98
239 240 2.749800 GCCAATAAGCCCGGAAGAAGAT 60.750 50.000 0.73 0.00 0.00 2.40
240 241 1.408266 GCCAATAAGCCCGGAAGAAGA 60.408 52.381 0.73 0.00 0.00 2.87
241 242 1.025041 GCCAATAAGCCCGGAAGAAG 58.975 55.000 0.73 0.00 0.00 2.85
242 243 3.184736 GCCAATAAGCCCGGAAGAA 57.815 52.632 0.73 0.00 0.00 2.52
243 244 4.977393 GCCAATAAGCCCGGAAGA 57.023 55.556 0.73 0.00 0.00 2.87
251 252 1.866015 AAAAGAGGGGGCCAATAAGC 58.134 50.000 4.39 0.00 0.00 3.09
280 281 8.691797 ACTTTGTTAGTTTACAATGGTCAACAT 58.308 29.630 0.27 0.00 37.81 2.71
281 282 8.057536 ACTTTGTTAGTTTACAATGGTCAACA 57.942 30.769 0.27 0.00 37.81 3.33
339 340 9.072375 TGTTTGTGAAACCAAATAGACATATGA 57.928 29.630 10.38 0.00 40.67 2.15
345 346 8.816640 ATCAATGTTTGTGAAACCAAATAGAC 57.183 30.769 0.00 0.00 40.67 2.59
406 407 7.425224 TTCCAACTTTATTGAAGGGTCAAAA 57.575 32.000 0.00 0.00 46.66 2.44
413 414 5.010012 AGTGTGCTTCCAACTTTATTGAAGG 59.990 40.000 0.00 0.00 39.79 3.46
416 417 5.376625 AGAGTGTGCTTCCAACTTTATTGA 58.623 37.500 0.00 0.00 0.00 2.57
428 429 2.221981 CGTCCTTCAAAGAGTGTGCTTC 59.778 50.000 0.00 0.00 0.00 3.86
431 432 0.868406 CCGTCCTTCAAAGAGTGTGC 59.132 55.000 0.00 0.00 0.00 4.57
480 481 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
481 482 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
482 483 6.667558 ACTTATATTTAGGAACGGAGGGAG 57.332 41.667 0.00 0.00 0.00 4.30
483 484 7.441903 AAACTTATATTTAGGAACGGAGGGA 57.558 36.000 0.00 0.00 0.00 4.20
484 485 8.515695 AAAAACTTATATTTAGGAACGGAGGG 57.484 34.615 0.00 0.00 0.00 4.30
507 508 9.052759 GTAGTCACTTGTTGGAATCTCTAAAAA 57.947 33.333 0.00 0.00 0.00 1.94
508 509 8.208224 TGTAGTCACTTGTTGGAATCTCTAAAA 58.792 33.333 0.00 0.00 0.00 1.52
509 510 7.732025 TGTAGTCACTTGTTGGAATCTCTAAA 58.268 34.615 0.00 0.00 0.00 1.85
510 511 7.297936 TGTAGTCACTTGTTGGAATCTCTAA 57.702 36.000 0.00 0.00 0.00 2.10
511 512 6.911250 TGTAGTCACTTGTTGGAATCTCTA 57.089 37.500 0.00 0.00 0.00 2.43
512 513 5.808366 TGTAGTCACTTGTTGGAATCTCT 57.192 39.130 0.00 0.00 0.00 3.10
513 514 6.253727 CGTATGTAGTCACTTGTTGGAATCTC 59.746 42.308 0.00 0.00 0.00 2.75
514 515 6.071560 TCGTATGTAGTCACTTGTTGGAATCT 60.072 38.462 0.00 0.00 0.00 2.40
515 516 6.097356 TCGTATGTAGTCACTTGTTGGAATC 58.903 40.000 0.00 0.00 0.00 2.52
516 517 6.032956 TCGTATGTAGTCACTTGTTGGAAT 57.967 37.500 0.00 0.00 0.00 3.01
517 518 5.456548 TCGTATGTAGTCACTTGTTGGAA 57.543 39.130 0.00 0.00 0.00 3.53
518 519 5.456548 TTCGTATGTAGTCACTTGTTGGA 57.543 39.130 0.00 0.00 0.00 3.53
519 520 5.464057 TGTTTCGTATGTAGTCACTTGTTGG 59.536 40.000 0.00 0.00 0.00 3.77
520 521 6.519353 TGTTTCGTATGTAGTCACTTGTTG 57.481 37.500 0.00 0.00 0.00 3.33
521 522 7.542534 TTTGTTTCGTATGTAGTCACTTGTT 57.457 32.000 0.00 0.00 0.00 2.83
522 523 7.542534 TTTTGTTTCGTATGTAGTCACTTGT 57.457 32.000 0.00 0.00 0.00 3.16
523 524 8.279800 TCATTTTGTTTCGTATGTAGTCACTTG 58.720 33.333 0.00 0.00 0.00 3.16
524 525 8.373048 TCATTTTGTTTCGTATGTAGTCACTT 57.627 30.769 0.00 0.00 0.00 3.16
525 526 7.656137 ACTCATTTTGTTTCGTATGTAGTCACT 59.344 33.333 0.00 0.00 0.00 3.41
526 527 7.740346 CACTCATTTTGTTTCGTATGTAGTCAC 59.260 37.037 0.00 0.00 0.00 3.67
527 528 7.654116 TCACTCATTTTGTTTCGTATGTAGTCA 59.346 33.333 0.00 0.00 0.00 3.41
528 529 8.014322 TCACTCATTTTGTTTCGTATGTAGTC 57.986 34.615 0.00 0.00 0.00 2.59
529 530 7.956420 TCACTCATTTTGTTTCGTATGTAGT 57.044 32.000 0.00 0.00 0.00 2.73
532 533 9.773328 CATATTCACTCATTTTGTTTCGTATGT 57.227 29.630 0.00 0.00 0.00 2.29
533 534 8.736742 GCATATTCACTCATTTTGTTTCGTATG 58.263 33.333 0.00 0.00 0.00 2.39
534 535 8.458052 TGCATATTCACTCATTTTGTTTCGTAT 58.542 29.630 0.00 0.00 0.00 3.06
535 536 7.748683 GTGCATATTCACTCATTTTGTTTCGTA 59.251 33.333 0.00 0.00 34.29 3.43
536 537 6.582295 GTGCATATTCACTCATTTTGTTTCGT 59.418 34.615 0.00 0.00 34.29 3.85
537 538 6.803320 AGTGCATATTCACTCATTTTGTTTCG 59.197 34.615 1.81 0.00 43.28 3.46
566 567 6.996106 CGTATGTATGTACGTGGACATTTTT 58.004 36.000 9.14 0.00 41.75 1.94
567 568 6.578020 CGTATGTATGTACGTGGACATTTT 57.422 37.500 9.14 0.00 41.75 1.82
578 579 8.638685 AAATGGACTACAACGTATGTATGTAC 57.361 34.615 9.85 10.70 43.42 2.90
580 581 9.656040 TTTAAATGGACTACAACGTATGTATGT 57.344 29.630 9.85 3.57 43.42 2.29
584 585 9.005777 ACATTTTAAATGGACTACAACGTATGT 57.994 29.630 20.00 8.15 46.36 2.29
585 586 9.272901 CACATTTTAAATGGACTACAACGTATG 57.727 33.333 20.00 2.93 0.00 2.39
586 587 9.005777 ACACATTTTAAATGGACTACAACGTAT 57.994 29.630 20.00 0.00 0.00 3.06
587 588 8.380743 ACACATTTTAAATGGACTACAACGTA 57.619 30.769 20.00 0.00 0.00 3.57
588 589 7.266922 ACACATTTTAAATGGACTACAACGT 57.733 32.000 20.00 0.00 0.00 3.99
589 590 9.666626 TTTACACATTTTAAATGGACTACAACG 57.333 29.630 20.00 2.15 0.00 4.10
610 611 9.603921 CCGTTCCTAAATATAAGTCCTTTTACA 57.396 33.333 0.00 0.00 0.00 2.41
611 612 9.822185 TCCGTTCCTAAATATAAGTCCTTTTAC 57.178 33.333 0.00 0.00 0.00 2.01
613 614 7.991460 CCTCCGTTCCTAAATATAAGTCCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
614 615 7.419865 CCCTCCGTTCCTAAATATAAGTCCTTT 60.420 40.741 0.00 0.00 0.00 3.11
615 616 6.042897 CCCTCCGTTCCTAAATATAAGTCCTT 59.957 42.308 0.00 0.00 0.00 3.36
616 617 5.543020 CCCTCCGTTCCTAAATATAAGTCCT 59.457 44.000 0.00 0.00 0.00 3.85
617 618 5.541484 TCCCTCCGTTCCTAAATATAAGTCC 59.459 44.000 0.00 0.00 0.00 3.85
618 619 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
619 620 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
620 621 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
621 622 7.300658 ACTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
622 623 6.856757 ACTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
623 624 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
629 630 5.336491 AATATACTACTCCCTCCGTTCCT 57.664 43.478 0.00 0.00 0.00 3.36
634 635 5.071384 ACCCAAAAATATACTACTCCCTCCG 59.929 44.000 0.00 0.00 0.00 4.63
635 636 6.329460 AGACCCAAAAATATACTACTCCCTCC 59.671 42.308 0.00 0.00 0.00 4.30
667 668 7.221838 CCGTTTGAAGTTTGAAATTTGAGCTAA 59.778 33.333 0.00 0.00 0.00 3.09
668 669 6.695278 CCGTTTGAAGTTTGAAATTTGAGCTA 59.305 34.615 0.00 0.00 0.00 3.32
713 715 2.740055 GTGAGTGGCAGGCAGACG 60.740 66.667 0.00 0.00 0.00 4.18
732 734 0.179045 GGTCGGTCCAATGGGATCAG 60.179 60.000 0.00 0.00 45.27 2.90
738 740 1.377202 CCACAGGTCGGTCCAATGG 60.377 63.158 0.00 0.00 37.21 3.16
1016 1026 4.856607 CGAGGAGGCCGAAGTCGC 62.857 72.222 0.00 0.00 38.18 5.19
1596 1612 2.555757 GTTGCCCATAATCTGCTCCATC 59.444 50.000 0.00 0.00 0.00 3.51
1869 1889 2.420129 CCCCAATCTTCAGAAGTACCCG 60.420 54.545 10.09 0.00 0.00 5.28
1947 2120 7.776933 TGAACAAGATCTGTGCATATCTAAC 57.223 36.000 0.00 3.93 38.82 2.34
1998 2171 1.151450 CCTGGCAAGGTCACAAGGT 59.849 57.895 0.00 0.00 38.96 3.50
2115 2288 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
2116 2289 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2117 2290 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2118 2291 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2119 2292 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2120 2293 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
2121 2294 1.205417 GGACAAGTATTTCCGGACGGA 59.795 52.381 1.83 9.76 43.52 4.69
2122 2295 1.206371 AGGACAAGTATTTCCGGACGG 59.794 52.381 1.83 3.96 36.95 4.79
2123 2296 2.537401 GAGGACAAGTATTTCCGGACG 58.463 52.381 1.83 0.00 36.95 4.79
2124 2297 2.165030 TCGAGGACAAGTATTTCCGGAC 59.835 50.000 1.83 0.00 36.95 4.79
2125 2298 2.449464 TCGAGGACAAGTATTTCCGGA 58.551 47.619 0.00 0.00 36.95 5.14
2126 2299 2.953466 TCGAGGACAAGTATTTCCGG 57.047 50.000 0.00 0.00 36.95 5.14
2127 2300 4.034048 CCATTTCGAGGACAAGTATTTCCG 59.966 45.833 0.00 0.00 36.95 4.30
2128 2301 4.941873 ACCATTTCGAGGACAAGTATTTCC 59.058 41.667 0.00 0.00 0.00 3.13
2129 2302 6.072673 ACAACCATTTCGAGGACAAGTATTTC 60.073 38.462 0.00 0.00 0.00 2.17
2130 2303 5.768164 ACAACCATTTCGAGGACAAGTATTT 59.232 36.000 0.00 0.00 0.00 1.40
2131 2304 5.313712 ACAACCATTTCGAGGACAAGTATT 58.686 37.500 0.00 0.00 0.00 1.89
2132 2305 4.906618 ACAACCATTTCGAGGACAAGTAT 58.093 39.130 0.00 0.00 0.00 2.12
2133 2306 4.345859 ACAACCATTTCGAGGACAAGTA 57.654 40.909 0.00 0.00 0.00 2.24
2134 2307 3.208747 ACAACCATTTCGAGGACAAGT 57.791 42.857 0.00 0.00 0.00 3.16
2135 2308 5.178797 AGATACAACCATTTCGAGGACAAG 58.821 41.667 0.00 0.00 0.00 3.16
2136 2309 5.160607 AGATACAACCATTTCGAGGACAA 57.839 39.130 0.00 0.00 0.00 3.18
2137 2310 4.819105 AGATACAACCATTTCGAGGACA 57.181 40.909 0.00 0.00 0.00 4.02
2138 2311 5.978322 GTCTAGATACAACCATTTCGAGGAC 59.022 44.000 0.00 0.00 0.00 3.85
2139 2312 5.892119 AGTCTAGATACAACCATTTCGAGGA 59.108 40.000 0.00 0.00 0.00 3.71
2140 2313 6.150396 AGTCTAGATACAACCATTTCGAGG 57.850 41.667 0.00 0.00 0.00 4.63
2141 2314 9.751542 AATAAGTCTAGATACAACCATTTCGAG 57.248 33.333 0.00 0.00 0.00 4.04
2180 2353 9.699410 TGTCTTAGAAATGGATAAAATGGATGT 57.301 29.630 0.00 0.00 0.00 3.06
2183 2356 9.753674 ACTTGTCTTAGAAATGGATAAAATGGA 57.246 29.630 0.00 0.00 0.00 3.41
2190 2363 9.542462 CGGAAATACTTGTCTTAGAAATGGATA 57.458 33.333 0.00 0.00 0.00 2.59
2191 2364 7.499232 CCGGAAATACTTGTCTTAGAAATGGAT 59.501 37.037 0.00 0.00 0.00 3.41
2192 2365 6.821665 CCGGAAATACTTGTCTTAGAAATGGA 59.178 38.462 0.00 0.00 0.00 3.41
2193 2366 6.821665 TCCGGAAATACTTGTCTTAGAAATGG 59.178 38.462 0.00 0.00 0.00 3.16
2194 2367 7.464178 CGTCCGGAAATACTTGTCTTAGAAATG 60.464 40.741 5.23 0.00 0.00 2.32
2195 2368 6.534079 CGTCCGGAAATACTTGTCTTAGAAAT 59.466 38.462 5.23 0.00 0.00 2.17
2196 2369 5.865552 CGTCCGGAAATACTTGTCTTAGAAA 59.134 40.000 5.23 0.00 0.00 2.52
2197 2370 5.404946 CGTCCGGAAATACTTGTCTTAGAA 58.595 41.667 5.23 0.00 0.00 2.10
2198 2371 4.142315 CCGTCCGGAAATACTTGTCTTAGA 60.142 45.833 5.23 0.00 37.50 2.10
2199 2372 4.110482 CCGTCCGGAAATACTTGTCTTAG 58.890 47.826 5.23 0.00 37.50 2.18
2200 2373 3.763360 TCCGTCCGGAAATACTTGTCTTA 59.237 43.478 5.23 0.00 42.05 2.10
2201 2374 2.564062 TCCGTCCGGAAATACTTGTCTT 59.436 45.455 5.23 0.00 42.05 3.01
2202 2375 2.165845 CTCCGTCCGGAAATACTTGTCT 59.834 50.000 5.23 0.00 44.66 3.41
2203 2376 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2204 2377 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2205 2378 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2206 2379 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2207 2380 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2208 2381 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2209 2382 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2210 2383 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2211 2384 0.251742 TTACTCCCTCCGTCCGGAAA 60.252 55.000 5.23 0.00 44.66 3.13
2212 2385 0.251742 TTTACTCCCTCCGTCCGGAA 60.252 55.000 5.23 0.00 44.66 4.30
2213 2386 0.032813 ATTTACTCCCTCCGTCCGGA 60.033 55.000 0.00 0.00 42.90 5.14
2214 2387 1.696063 TATTTACTCCCTCCGTCCGG 58.304 55.000 0.00 0.00 0.00 5.14
2215 2388 2.889045 TGATATTTACTCCCTCCGTCCG 59.111 50.000 0.00 0.00 0.00 4.79
2216 2389 4.799917 GCTTGATATTTACTCCCTCCGTCC 60.800 50.000 0.00 0.00 0.00 4.79
2217 2390 4.308265 GCTTGATATTTACTCCCTCCGTC 58.692 47.826 0.00 0.00 0.00 4.79
2218 2391 3.243771 CGCTTGATATTTACTCCCTCCGT 60.244 47.826 0.00 0.00 0.00 4.69
2219 2392 3.005472 TCGCTTGATATTTACTCCCTCCG 59.995 47.826 0.00 0.00 0.00 4.63
2220 2393 4.602340 TCGCTTGATATTTACTCCCTCC 57.398 45.455 0.00 0.00 0.00 4.30
2221 2394 6.688578 TGTATCGCTTGATATTTACTCCCTC 58.311 40.000 0.00 0.00 36.96 4.30
2222 2395 6.295349 CCTGTATCGCTTGATATTTACTCCCT 60.295 42.308 0.00 0.00 36.96 4.20
2223 2396 5.869888 CCTGTATCGCTTGATATTTACTCCC 59.130 44.000 0.00 0.00 36.96 4.30
2224 2397 5.348997 GCCTGTATCGCTTGATATTTACTCC 59.651 44.000 0.00 0.00 36.96 3.85
2225 2398 5.348997 GGCCTGTATCGCTTGATATTTACTC 59.651 44.000 0.00 0.00 36.96 2.59
2226 2399 5.221641 TGGCCTGTATCGCTTGATATTTACT 60.222 40.000 3.32 0.00 36.96 2.24
2227 2400 4.994852 TGGCCTGTATCGCTTGATATTTAC 59.005 41.667 3.32 0.00 36.96 2.01
2228 2401 5.222079 TGGCCTGTATCGCTTGATATTTA 57.778 39.130 3.32 0.00 36.96 1.40
2260 2433 2.689983 CCACCTGATAGGACAAAATGCC 59.310 50.000 1.13 0.00 37.67 4.40
2272 2445 3.584406 CCCATGAGAATAGCCACCTGATA 59.416 47.826 0.00 0.00 0.00 2.15
2337 2510 1.134670 GTTGAAGCTCTATCGGTGCCT 60.135 52.381 0.00 0.00 35.28 4.75
2343 2516 2.791560 CGGATGTGTTGAAGCTCTATCG 59.208 50.000 0.00 0.00 0.00 2.92
2358 2531 4.389374 GTGATGATTACCCAATCGGATGT 58.611 43.478 0.00 0.00 43.06 3.06
2375 2548 2.672874 ACAATGACGTGATTCCGTGATG 59.327 45.455 0.00 0.00 41.98 3.07
2379 2552 2.671396 GCTAACAATGACGTGATTCCGT 59.329 45.455 0.00 0.00 45.18 4.69
2388 2561 6.430451 AGTTTTGAGAAAGCTAACAATGACG 58.570 36.000 0.00 0.00 29.65 4.35
2463 2636 9.956640 AGCTATCTATATGCTGCTTTATTTTCT 57.043 29.630 0.00 0.00 35.54 2.52
2469 2642 8.378565 AGGAAAAGCTATCTATATGCTGCTTTA 58.621 33.333 10.47 0.00 45.90 1.85
2471 2644 6.777782 AGGAAAAGCTATCTATATGCTGCTT 58.222 36.000 0.00 0.00 41.67 3.91
2474 2647 7.877097 ACTCAAGGAAAAGCTATCTATATGCTG 59.123 37.037 0.00 0.00 37.11 4.41
2482 2655 6.515696 GCACAAAACTCAAGGAAAAGCTATCT 60.516 38.462 0.00 0.00 0.00 1.98
2498 2714 3.446873 TCAACCAATCTGTGCACAAAACT 59.553 39.130 21.98 2.70 0.00 2.66
2529 2751 6.163476 AGTAGTTTTATTGACACGCAGATCA 58.837 36.000 0.00 0.00 0.00 2.92
2530 2752 6.648725 AGTAGTTTTATTGACACGCAGATC 57.351 37.500 0.00 0.00 0.00 2.75
2536 2758 7.636326 AGTTCCAAAGTAGTTTTATTGACACG 58.364 34.615 0.00 0.00 0.00 4.49
2581 2803 6.294342 CCTGGTAGCAAATCCATGATACATTG 60.294 42.308 0.00 0.00 42.48 2.82
2600 2822 5.567037 ACTTGCAATATAGATGCCTGGTA 57.433 39.130 0.00 0.00 43.16 3.25
2632 2854 7.175797 TGTGGGTTTGGTGTAATGTATGAATA 58.824 34.615 0.00 0.00 0.00 1.75
2648 2870 6.573664 TGTCTCTAATCATTTGTGGGTTTG 57.426 37.500 0.00 0.00 0.00 2.93
2649 2871 7.067494 GCTATGTCTCTAATCATTTGTGGGTTT 59.933 37.037 0.00 0.00 0.00 3.27
2652 2874 5.471456 GGCTATGTCTCTAATCATTTGTGGG 59.529 44.000 0.00 0.00 0.00 4.61
2654 2876 5.178252 CCGGCTATGTCTCTAATCATTTGTG 59.822 44.000 0.00 0.00 0.00 3.33
2677 2899 0.681733 TGGTGAGTCACTGAAGCTCC 59.318 55.000 22.18 4.29 34.40 4.70
2682 2904 4.100963 TCTTAAGCTTGGTGAGTCACTGAA 59.899 41.667 22.18 14.02 34.40 3.02
2765 2989 9.640963 GACTGTCTAGTTGTACAATAAGTGAAT 57.359 33.333 12.26 0.00 37.25 2.57
2766 2990 8.086522 GGACTGTCTAGTTGTACAATAAGTGAA 58.913 37.037 12.26 2.85 37.25 3.18
2767 2991 7.450634 AGGACTGTCTAGTTGTACAATAAGTGA 59.549 37.037 12.26 3.94 37.25 3.41
2768 2992 7.603651 AGGACTGTCTAGTTGTACAATAAGTG 58.396 38.462 12.26 9.30 37.25 3.16
2769 2993 7.670559 AGAGGACTGTCTAGTTGTACAATAAGT 59.329 37.037 12.26 9.08 37.25 2.24
2770 2994 7.971168 CAGAGGACTGTCTAGTTGTACAATAAG 59.029 40.741 12.26 12.02 37.25 1.73
2772 2996 7.392494 CAGAGGACTGTCTAGTTGTACAATA 57.608 40.000 12.26 4.81 37.25 1.90
2773 2997 6.274157 CAGAGGACTGTCTAGTTGTACAAT 57.726 41.667 12.26 3.86 37.25 2.71
2796 3199 1.327690 TGCTCGGGATCACCTACCAC 61.328 60.000 0.00 0.00 36.97 4.16
2810 3213 3.670637 TAGCCTGGCAGCTTGCTCG 62.671 63.158 22.65 0.43 41.41 5.03
2857 3260 4.494484 GCCACATGAAATTACCCAACTTC 58.506 43.478 0.00 0.00 0.00 3.01
2866 3269 2.618241 GGATCAGCGCCACATGAAATTA 59.382 45.455 2.29 0.00 0.00 1.40
2878 3281 6.129168 CGTATATTATTATTCGGGATCAGCGC 60.129 42.308 0.00 0.00 0.00 5.92
2937 3343 8.798402 GTCACAGTCTACAGCTAAGGATTATAT 58.202 37.037 0.00 0.00 0.00 0.86
2973 3379 5.124457 TGAAGAAGATGAAACAATAGCCTGC 59.876 40.000 0.00 0.00 0.00 4.85
2977 3383 9.630098 TTGAAATGAAGAAGATGAAACAATAGC 57.370 29.630 0.00 0.00 0.00 2.97
2987 3393 6.322969 TGATGGGGATTGAAATGAAGAAGATG 59.677 38.462 0.00 0.00 0.00 2.90
3014 3420 9.683069 GATTGTCTATTGAAACACTGAAACAAT 57.317 29.630 0.00 0.00 36.59 2.71
3021 3454 9.499585 GATGATTGATTGTCTATTGAAACACTG 57.500 33.333 0.00 0.00 0.00 3.66
3072 3511 7.083062 ACCATATGAAGATTGAGCTCCATTA 57.917 36.000 12.15 0.00 0.00 1.90
3153 3592 4.037923 CCACAGGAAAAGTGTAATGCAAGT 59.962 41.667 0.00 0.00 35.24 3.16
3189 3628 3.818210 ACACATGTAGCAAATCACGGAAA 59.182 39.130 0.00 0.00 0.00 3.13
3197 3636 7.868922 CCATAAATGCATACACATGTAGCAAAT 59.131 33.333 15.34 10.92 37.79 2.32
3200 3639 5.827267 ACCATAAATGCATACACATGTAGCA 59.173 36.000 14.20 14.20 38.24 3.49
3395 3836 4.827284 CCAGTTCCACCAAAGATAACAACT 59.173 41.667 0.00 0.00 0.00 3.16
3492 3933 2.105649 GGATGGAGTTTGGGAGAGGATC 59.894 54.545 0.00 0.00 0.00 3.36
3517 3958 2.746362 CTGAACAGGCCTGTCAGAAATC 59.254 50.000 36.79 30.08 44.13 2.17
3524 3965 3.623510 GCTAAATACTGAACAGGCCTGTC 59.376 47.826 37.75 28.30 44.13 3.51
3550 3991 4.397420 TCAGGCAAGAAAAGATGTAAGCA 58.603 39.130 0.00 0.00 0.00 3.91
3657 4100 1.512926 ACGTCTGCATTGACTGGTTC 58.487 50.000 4.76 0.00 35.00 3.62
3917 4360 3.951306 TGACAACTGCAAGAAATGAACG 58.049 40.909 0.00 0.00 37.43 3.95
4031 4474 1.210478 ACAGCTAATCGCCCTTGTGAT 59.790 47.619 0.00 0.00 43.47 3.06
4041 4484 4.494690 CCAATGCTACAACACAGCTAATCG 60.495 45.833 0.00 0.00 39.83 3.34
4043 4486 3.696051 CCCAATGCTACAACACAGCTAAT 59.304 43.478 0.00 0.00 39.83 1.73
4047 4490 1.200020 GTCCCAATGCTACAACACAGC 59.800 52.381 0.00 0.00 39.56 4.40
4050 4493 4.236935 CAAATGTCCCAATGCTACAACAC 58.763 43.478 0.00 0.00 0.00 3.32
4071 4514 0.179137 CGCTGCCGTGAGAGAATACA 60.179 55.000 0.00 0.00 0.00 2.29
4362 4805 0.164647 CTACAGCTCAACAACAGCGC 59.835 55.000 0.00 0.00 42.14 5.92
4419 4862 1.633561 CATCACTCATTCGAGCACGT 58.366 50.000 2.86 0.00 43.66 4.49
4427 4870 2.286872 CTGGACAGCCATCACTCATTC 58.713 52.381 0.00 0.00 44.91 2.67
4495 4938 0.251653 TCACCCGGTTCTCTAGCTGT 60.252 55.000 0.00 0.00 0.00 4.40
4511 4954 2.076863 GGTTCCACAGTAGTGCATCAC 58.923 52.381 0.00 0.00 44.53 3.06
4531 4974 3.174790 CGGTTCTAAGCGGGATACG 57.825 57.895 6.41 0.00 45.30 3.06
4547 4990 5.086058 CGTTCTTGGTCAAACAATATTCGG 58.914 41.667 0.00 0.00 0.00 4.30
4607 5091 1.280421 AGGAGTTCAGAATGCCAGACC 59.720 52.381 6.93 0.00 34.76 3.85
4635 5119 1.151668 AATCTCAGCAGCAACACGTC 58.848 50.000 0.00 0.00 0.00 4.34
4637 5121 1.265095 ACAAATCTCAGCAGCAACACG 59.735 47.619 0.00 0.00 0.00 4.49
4662 5146 2.670414 CTGAAATCACCTCTCGCAGTTC 59.330 50.000 0.00 0.00 0.00 3.01
4665 5149 2.662006 TCTGAAATCACCTCTCGCAG 57.338 50.000 0.00 0.00 0.00 5.18
4731 5215 5.633182 CCAAAACCCACGAATACTCAATTTG 59.367 40.000 0.00 0.00 35.36 2.32
4747 5232 2.365293 ACATTCTGCTGAACCAAAACCC 59.635 45.455 8.32 0.00 34.71 4.11
4749 5234 2.796593 GCACATTCTGCTGAACCAAAAC 59.203 45.455 8.32 0.00 43.33 2.43
4761 5246 2.390599 CCACCGTCGGCACATTCTG 61.391 63.158 12.28 0.00 0.00 3.02
4791 5276 1.472878 CGTACTACTGGCTGCTCTGAA 59.527 52.381 0.00 0.00 0.00 3.02
4792 5277 1.095600 CGTACTACTGGCTGCTCTGA 58.904 55.000 0.00 0.00 0.00 3.27
4793 5278 0.811915 ACGTACTACTGGCTGCTCTG 59.188 55.000 0.00 0.00 0.00 3.35
4794 5279 2.290464 CTACGTACTACTGGCTGCTCT 58.710 52.381 0.00 0.00 0.00 4.09
4795 5280 2.015587 ACTACGTACTACTGGCTGCTC 58.984 52.381 0.00 0.00 0.00 4.26
4796 5281 2.125773 ACTACGTACTACTGGCTGCT 57.874 50.000 0.00 0.00 0.00 4.24
4798 5283 4.698583 AGAAACTACGTACTACTGGCTG 57.301 45.455 0.00 0.00 0.00 4.85
4799 5284 4.617762 GCAAGAAACTACGTACTACTGGCT 60.618 45.833 0.00 0.00 0.00 4.75
4800 5285 3.611549 GCAAGAAACTACGTACTACTGGC 59.388 47.826 0.00 0.00 0.00 4.85
4801 5286 4.171754 GGCAAGAAACTACGTACTACTGG 58.828 47.826 0.00 0.00 0.00 4.00
4802 5287 4.171754 GGGCAAGAAACTACGTACTACTG 58.828 47.826 0.00 0.00 0.00 2.74
4803 5288 3.828451 TGGGCAAGAAACTACGTACTACT 59.172 43.478 0.00 0.00 0.00 2.57
4804 5289 3.922850 GTGGGCAAGAAACTACGTACTAC 59.077 47.826 0.00 0.00 0.00 2.73
4805 5290 3.828451 AGTGGGCAAGAAACTACGTACTA 59.172 43.478 0.00 0.00 0.00 1.82
4806 5291 2.631545 AGTGGGCAAGAAACTACGTACT 59.368 45.455 0.00 0.00 0.00 2.73
4807 5292 3.036075 AGTGGGCAAGAAACTACGTAC 57.964 47.619 0.00 0.00 0.00 3.67
4808 5293 3.395639 CAAGTGGGCAAGAAACTACGTA 58.604 45.455 0.00 0.00 0.00 3.57
4809 5294 2.218603 CAAGTGGGCAAGAAACTACGT 58.781 47.619 0.00 0.00 0.00 3.57
4821 5616 2.579873 AGATCACATATGCAAGTGGGC 58.420 47.619 14.71 8.83 36.43 5.36
4952 5864 1.803366 GACAGTTCCCGAGACCGTGT 61.803 60.000 0.00 0.00 0.00 4.49
4960 5872 2.168496 CTTGACTAGGACAGTTCCCGA 58.832 52.381 0.00 0.00 44.10 5.14
4975 5887 2.508526 AGGAAATGTCAGGTGCTTGAC 58.491 47.619 7.39 7.39 46.02 3.18
4979 5891 4.965532 AGATAGTAGGAAATGTCAGGTGCT 59.034 41.667 0.00 0.00 0.00 4.40
4988 5900 5.636965 CGCCAGATTCAGATAGTAGGAAATG 59.363 44.000 0.00 0.00 0.00 2.32
5038 5950 5.360591 AGTATCTCATTGTTTAGGCGGAAG 58.639 41.667 0.00 0.00 0.00 3.46
5053 5965 2.630098 GCTGGTGCCTGATAGTATCTCA 59.370 50.000 11.40 4.40 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.